Version 1.1

This version of Cytomine-bootstrap is compatible with the version 1.1 of Cytomine-IMS & Cytomine-Core.

When using our software, we kindly ask you to cite our website url and related publications in all your work (publications, studies, oral presentations,...) using Cytomine. In particular, we recommend to cite (Marée et al., Bioinformatics 2016) paper, and to use our logo when appropriate. See our license files for additional details.

Please see http://doc.cytomine.be/pages/viewpage.action?pageId=10715266 to know how to install Cytomine with Docker.

More information on Cytomine website and on our online documentation.

Changelog (upgrade guide from V1.0 to v1.1) :

• Into the configuration file, change MODELS_PATH by it's parent, ALGO_PATH.
• All Dockerfile image are on DockerHub.
• Data_containers are now volumes. You need to backup databases, clean all containers than restore data into the new volumes as explained in documentation.

Thanks to :
The Walloon Region for the Histoweb grant (2014 -- 2017)

Global Open Source release

This version of Cytomine-bootstrap is compatible with the version 1.0 of Cytomine-IMS & Cytomine-Core.

Official 1.0 Open Source release of Cytomine-bootstrap associated to the paper (Marée et al., Bioinformatics 2016) !

When using our software, you agree to cite our website url and related publications in all your work (publications, studies, oral presentations,...). In particular, you agree to cite our (Marée et al., Bioinformatics 2016) paper, and to use our logo when appropriate. See our license files for additional details.

URL: http://www.cytomine.be/
Logo: http://www.cytomine.be/logo/logo.png
Scientific paper: Raphaël Marée, Loïc Rollus, Benjamin Stévens, Renaud Hoyoux, Gilles Louppe, Rémy Vandaele, Jean-Michel Begon, Philipp Kainz, Pierre Geurts and Louis Wehenkel. Collaborative analysis of multi-gigapixel imaging data using Cytomine, Bioinformatics, DOI: 10.1093/bioinformatics/btw013, 2016. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btw013?ijkey=dQzEgmXVozFRPPf&keytype=ref
More information on Cytomine website and on our online documentation.