Prepare for v.1.1.0

Author: ivartb

TOOLS

@@ -6,12 +6,14 @@ component-cutter                         tools.ComponentCutterMain
 component-extractor                      tools.ComponentExtractorMain                                                     Extract graph components from tangled graph based on pivot k-mers
 component-paths                          tools.ComponentPathsMain                                                         Extracts paths in the components
 dist-matrix-calculator                   tools.DistanceMatrixCalculatorMain                                               Calculates distance matrix using features values
+double-view                              tools.DoubleViewMain                                                             Converts two binary k-mers files to single text file
 features-calculator                      tools.FeaturesCalculatorMain                                                     Calculates features values for input reads files
 heatmap-maker                            tools.HeatMapMakerMain                                                           constructs heatmap with dendrogram for distance matrix
 kmer-counter                             tools.KmersCounterMain                                                           Count k-mers in given reads with ArrayLong2IntHashMap
 kmer-counter-many                        tools.KmersCounterForManyFilesMain                                               Count k-mers for many files independently
 kmer-counter-posneg                      tools.KmersCounterPositiveNegative                                               Count k-mers for files from two groups independently
 kmers-filter                             tools.KmersFilter                                                                Filter k-mers from test set according to known samples
+kmers-grouped-counter                    tools.KmersGroupedSamplesCounter                                                 Count number of samples from 3 groups containing specified k-mers
 kmers-multiple-filters                   tools.KmersMultipleFilters                                                       Filter k-mers from test set according to three specified sets
 kmers-samples-counter                    tools.KmersSamplesCounter                                                        Count number of samples containing k-mers from multiple samples
 matrix-builder                           tools.DistanceMatrixBuilderMain                                                  Builds the distance matrix for input sequences

build.xml

@@ -1,5 +1,5 @@
 <project name="jarsBuilder" default="metafast">
-    <property name="VERSION" value="1.0.0"/>
+    <property name="VERSION" value="1.1.0"/>
     <exec executable="git" outputproperty="revision">
         <arg value="rev-parse"/>
         <arg value="--short"/>
@@ -74,8 +74,8 @@
     <property name="project.sh" value="${jars.dir}/${project.name}.sh"/>
     <property name="project.bat" value="${jars.dir}/${project.name}.bat"/>
 
-    <property name="ant.build.javac.source" value="1.6"/>
-    <property name="ant.build.javac.target" value="1.6"/>
+    <property name="ant.build.javac.source" value="1.8"/>
+    <property name="ant.build.javac.target" value="1.8"/>