diff --git a/README.md b/README.md index 99ea047..1b1caa8 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ CSDMS Ivy is a collection of instructional materials on * modern, collaborative, scientific software development, and * use of community cyberinfrastructure tools -for scientists specializing in earth surface process modeling. +for researchers in earth and planetary surface processes. CSDMS Ivy is written and maintained by the @@ -94,7 +94,7 @@ CSDMS Ivy is supported with funding from the National Science Foundation. [bmi]: ./lessons/bmi/index.ipynb [landlab]: ./lessons/landlab/index.ipynb [pymt]: ./lessons/pymt/index.ipynb -[permamodel]: ./lessons/permamodel +[permamodel]: ./lessons/permamodel/index.ipynb [best-practices]: ./lessons/best-practices/index.md [hpc]: ./lessons/hpc/index.md [jhub-link]: https://lab.openearthscape.org/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Fcsdms%2Fivy&urlpath=lab%2Ftree%2Fivy%2Fstart.ipynb%3Fautodecode&branch=main diff --git a/lessons/permamodel/index.ipynb b/lessons/permamodel/index.ipynb new file mode 100644 index 0000000..f88fc1e --- /dev/null +++ b/lessons/permamodel/index.ipynb @@ -0,0 +1,72 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Permamodel Toolkit\n", + "\n", + "The [Permamodel Toolkit](https://github.com/permamodel) is a collection of open source models and tools for studying the physics of permafrost-related processes.\n", + "Permamodel makes it easier for researchers to explore predictions of how melting permafrost might affect carbon release, wetlands, and river deltas as they evolve, and other interacting effects.\n", + "\n", + "Permamodel models run within the [Python Modeling Toolkit](https://pymt.readthedocs.io) (pymt)." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Using Permamodel\n", + "\n", + "* [The Ku Model](ku-eml-paleomip.ipynb)\n", + " * Initializing Ku with data\n", + " * Running Ku\n", + " * Plotting output\n", + "\n", + "* [Coupling with Landlab](PFdepth-dependent-diffusion.ipynb)\n", + " * Loading a DEM\n", + " * Using Landlab with Ku outputs\n", + " * Visualizing results" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Reference\n", + "\n", + "* Overeem, I., Jafarov, E., Wang, K., Schaefer, K., Stewart, S., Clow, G., Piper, M., and Elshorbany, Y. (2018), A modeling toolbox for permafrost landscapes, *Eos*, **99**, https://doi.org/10.1029/2018EO105155. Published on 28 September 2018.\n", + "* Wang, K., Jafarov, E., and Overeem, I. (2020), Sensitivity evaluation of the Kudryavtsev permafrost model, *Science of The Total Environment*, **720**, p. 137538, https://doi.org/10.1016/j.scitotenv.2020.137538.\n", + "* [Permamodel @ GitHub](https://github.com/permamodel)\n" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.9.4" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +} diff --git a/lessons/permamodel/inputs/A_air.txt b/lessons/permamodel/inputs/A_air.txt new file mode 100644 index 0000000..e83fdea --- /dev/null +++ b/lessons/permamodel/inputs/A_air.txt @@ -0,0 +1,1000 @@ +1.904893493652343750e+01 +1.470635223388671875e+01 +1.641956329345703125e+01 +2.021269989013671875e+01 +1.642887878417968750e+01 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+2.983221709728240967e-01 +2.986724078655242920e-01 +3.093363046646118164e-01 +3.064437508583068848e-01 +2.817981839179992676e-01 +3.055109977722167969e-01 +2.900707125663757324e-01 +2.997881770133972168e-01 +3.013532161712646484e-01 +2.993788421154022217e-01 +3.001634776592254639e-01 +3.096372783184051514e-01 +3.107537627220153809e-01 +2.998736500740051270e-01 +3.018242716789245605e-01 +2.990562915802001953e-01 +3.042353689670562744e-01 +3.059203028678894043e-01 +3.042632341384887695e-01 +3.012436926364898682e-01 +3.045356869697570801e-01 +2.847518920898437500e-01 +3.066213726997375488e-01 diff --git a/start.ipynb b/start.ipynb index a263f68..881b3eb 100644 --- a/start.ipynb +++ b/start.ipynb @@ -13,7 +13,7 @@ "* modern, collaborative, scientific software development, and\n", "* use of community cyberinfrastructure tools\n", "\n", - "for scientists specializing in earth surface process modeling.\n", + "for researchers in earth and planetary surface processes.\n", "\n", "CSDMS Ivy is\n", "written and maintained by the\n", @@ -100,7 +100,7 @@ "[bmi]: ./lessons/bmi/index.ipynb\n", "[landlab]: ./lessons/landlab/index.ipynb\n", "[pymt]: ./lessons/pymt/index.ipynb\n", - "[permamodel]: ./lessons/permamodel\n", + "[permamodel]: ./lessons/permamodel/index.ipynb\n", "[best-practices]: ./lessons/best-practices/index.md\n", "[hpc]: ./lessons/hpc/index.md\n", "[jhub-link]: https://lab.openearthscape.org/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Fcsdms%2Fivy&urlpath=lab%2Ftree%2Fivy%2Fstart.ipynb%3Fautodecode&branch=main\n",