P.1 orf3a:G174C

[kristyhoran]

I have been looking at the variants which define the VOC P.1 and there seems to be only 16 in config_p.1.csv (not 17, which is listed in the output), in addition there is a variant listed orf3a:G174C which does not seem to be a variant defining P.1 (which likely explains the max 15/17 result returned by pangolin for P.1). Can you shed some light on what I might be missing with the variants for P.1?

[victormaricato]

there seems to be only 16 in config_p.1.csv (not 17, which is listed in the output)

#180 already mapped this issue and if you update to current version 2.4.2 it should be solved.

variant listed orf3a:G174C which does not seem to be a variant defining P.1 (which likely explains the max 15/17 result returned by pangolin for P.1).

Just adding that we can refer to the mutations defining P.1 at the Supplementary Material (Table S.1) of this paper.

[victormaricato]

@aineniamh #196 solves it.

[aineniamh]

We've got a new branch almost ready to merge in that'll fix it too, but in the meantime this helps. Thank you!