From c55e988b80418633aeead65d4417d2559274ece6 Mon Sep 17 00:00:00 2001 From: aineniamh Date: Tue, 23 Mar 2021 08:07:19 +0000 Subject: [PATCH] b1351 patch for slineages --- pangolin/__init__.py | 2 +- pangolin/scripts/pangolearn.smk | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/pangolin/__init__.py b/pangolin/__init__.py index 4822214..d8bd3b0 100644 --- a/pangolin/__init__.py +++ b/pangolin/__init__.py @@ -1,2 +1,2 @@ _program = "pangolin" -__version__ = "2.3.4" +__version__ = "2.3.5" diff --git a/pangolin/scripts/pangolearn.smk b/pangolin/scripts/pangolearn.smk index e05c6d0..91c9710 100644 --- a/pangolin/scripts/pangolearn.smk +++ b/pangolin/scripts/pangolearn.smk @@ -295,7 +295,7 @@ rule overwrite: new_row["lineage"] = "B.1.1.7" writer.writerow(new_row) - elif row["lineage"] =="B.1.351" and row["taxon"] not in b1351: + elif row["lineage"].startswith("B.1.351") and row["taxon"] not in b1351: new_row = row new_row["probability"] = "1.0" @@ -303,7 +303,7 @@ rule overwrite: writer.writerow(new_row) - elif row["taxon"] in b1351 and not row["lineage"].startswith("B.1.351."): + elif row["taxon"] in b1351: new_row = row snps = b1351[row["taxon"]]