Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

JN.1.25.1 FLirt (15) with a S:S31del sub branch (3) #2608

Closed
FedeGueli opened this issue May 24, 2024 · 2 comments
Closed

JN.1.25.1 FLirt (15) with a S:S31del sub branch (3) #2608

FedeGueli opened this issue May 24, 2024 · 2 comments

Comments

@FedeGueli
Copy link
Contributor

FedeGueli commented May 24, 2024

Known as Branch 139 of sars-cov-2-variants/lineage-proposals#1089
JN.1.25.1 >> C7318T > G26648A > C28948T > S:F456L (T22928C)
Query: C7318T , G26648A ,T22928C
Samples: 8 Canada , UAE (GBW), Uk
First collected on 2024-02-08 from UAE (GBW)
IDs: EPI_ISL_18914548, EPI_ISL_18937396, EPI_ISL_19140331,
EPI_ISL_19144001, EPI_ISL_19146658, EPI_ISL_19146741,
EPI_ISL_19146763, EPI_ISL_19146765
the sample from Canada has also S:S31del DeFLiRT (Query: G26648A,del21653_21655, T22928C)

Tree:
Screenshot 2024-05-24 alle 18 13 53
Screenshot 2024-05-24 alle 18 13 53
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_28521_bc570.json?c=gt-S_456&label=id:node_6978463

@FedeGueli
Copy link
Contributor Author

Designated LM.1 via 26a96ed

@FedeGueli FedeGueli changed the title JN.1.25.1 FLirt (8) with a singlet with S:S31del JN.1.25.1 FLirt (14) with a S:S31del sub branch (3) Jun 10, 2024
@FedeGueli FedeGueli changed the title JN.1.25.1 FLirt (14) with a S:S31del sub branch (3) JN.1.25.1 FLirt (15) with a S:S31del sub branch (3) Jun 20, 2024
@FedeGueli
Copy link
Contributor Author

closing this

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Jun 20, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant