JN.1.11.1 + C5467T got FLiRT (99) and further S:F59S (31)

[FedeGueli]

Former Branch 100 of sars-cov-2-variants/lineage-proposals#1089
( be aware there are two JN.1.11.1 branches with 5467T and FLiRT )

Defining mutations:
JN.1.11.1 > C5467T > S:R346T (G22599C)
Query: C5467T, G22599C,C7113T,-C9857T,T3565C
Samples: 14 from Uk, Taiwan , Singapore, Canada, India, Australia
with an unclear sub branch with S:F59S : Query: T21738C,C5467T,C7113T Samples: 3 (Taiwan,Singapore,Australia)
Samples:
EPI_ISL_19010304, EPI_ISL_19013458, EPI_ISL_19054979,
EPI_ISL_19055640, EPI_ISL_19062567, EPI_ISL_19062641,
EPI_ISL_19066217, EPI_ISL_19071001, EPI_ISL_19088236,
EPI_ISL_19095652, EPI_ISL_19095844

Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_1baf3_8b9380.json?label=id:node_6978268

[FedeGueli]

15

[FedeGueli]

20 now most recent samples coming from Australia and Spain

[FedeGueli]

27

[FedeGueli]

45 not sure how much it could do likely Nextclade reads it as KP.2 so i m closing it

[FedeGueli]

53 with recent samples reopening

[FedeGueli]

86

[FedeGueli]

dying