TRIO KP.5 (JN.1.11.1 + S:T572I) with S:R346T (84)

[FedeGueli]

Original KP.5 proposal

Formerly tracked as Branch 63 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097 and for FLiRT>Trio branch as Branch 111 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089

JN.1.11.1 >S:T572I (C23277T)
Query:C7113T,C23277T,T3565C, G24872T,-G9010A,-C6070T,-A24819G,T22928C
Samples: 15
EPI_ISL_18989868, EPI_ISL_19012494, EPI_ISL_19022916,
EPI_ISL_19028021, EPI_ISL_19032236, EPI_ISL_19032824,
EPI_ISL_19038709, EPI_ISL_19055484, EPI_ISL_19055680,
EPI_ISL_19058372, EPI_ISL_19070036, EPI_ISL_19070190,
EPI_ISL_19070263, EPI_ISL_19073920, EPI_ISL_19076771

Now with a FLiRT > TRIO Branch:
KP.5 > C3811T > C2197T, C9857T, S:R346T (G22599C) ,A23080G (S:Q506Q)
New query: C3811T, G22599C,C23277T, G17334T by @aviczhl2 from sars-cov-2-variants/lineage-proposals#1724
[former Query:C3811T , C2197T, C9857T,T3565C ]
Samples: 3 (US)

Tree:

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_150f8_c372a0.json?label=id:node_6971654

[FedeGueli]

Designated KP.5 via dbfae34

[FedeGueli]

the trio branch has now 11 seqs

[FedeGueli]

84, only 20 in July tough and with many from Canada, i think this will die off.