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JN.1.8 Plus S:R346T (34 sequences, 8 countries including 3 different African countries) #2495

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FedeGueli opened this issue Feb 21, 2024 · 3 comments

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@FedeGueli
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FedeGueli commented Feb 21, 2024

Former branch 9 of sars-cov-2-variants/lineage-proposals#1089

There is a sublineage of JN.1.8 with S:R346T, that likely will deserve a designation having been found already in 5 continents despite the small number of sequences including Africa.

Defining mutations: JN.1.8 > A12928G,> S:R346T (G22599C),
Query: A12928G, G22599C,C27476T
Samples : 27
Countries: Australia, NZL, France, Canada, Singapore, US, Uk, Nigeria
IDs:EPI_ISL_18700854, EPI_ISL_18700885, EPI_ISL_18700900,
EPI_ISL_18728695, EPI_ISL_18757659, EPI_ISL_18779344,
EPI_ISL_18779965, EPI_ISL_18808493, EPI_ISL_18809293,
EPI_ISL_18842214, EPI_ISL_18850209, EPI_ISL_18859463,
EPI_ISL_18867202, EPI_ISL_18880191, EPI_ISL_18892580,
EPI_ISL_18907782, EPI_ISL_18910154, EPI_ISL_18910176,
EPI_ISL_18910247, EPI_ISL_18913511, EPI_ISL_18915627,
EPI_ISL_18916637, EPI_ISL_18916649, EPI_ISL_18916651,
EPI_ISL_18916656, EPI_ISL_18916660, EPI_ISL_18916666

Tree:
Screenshot 2024-02-21 alle 13 39 10
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice2_genome_test_41bc1_5d8d80.json?label=id:node_6904022

@FedeGueli FedeGueli changed the title JN.1.8 Plus S:R346T (27 sequences) Former branch 9 of #1089 in the second repo JN.1.8 Plus S:R346T (29 sequences) Former branch 9 of #1089 in the second repo Feb 26, 2024
@FedeGueli FedeGueli changed the title JN.1.8 Plus S:R346T (29 sequences) Former branch 9 of #1089 in the second repo JN.1.8 Plus S:R346T (32 sequences) Former branch 9 of #1089 in the second repo Feb 29, 2024
@FedeGueli FedeGueli changed the title JN.1.8 Plus S:R346T (32 sequences) Former branch 9 of #1089 in the second repo JN.1.8 Plus S:R346T (39 sequences) Former branch 9 of #1089 in the second repo Mar 7, 2024
@FedeGueli FedeGueli changed the title JN.1.8 Plus S:R346T (39 sequences) Former branch 9 of #1089 in the second repo JN.1.8 Plus S:R346T (39 sequences, 11 countries including 3 different African countries) Mar 7, 2024
@FedeGueli FedeGueli changed the title JN.1.8 Plus S:R346T (39 sequences, 11 countries including 3 different African countries) JN.1.8 Plus S:R346T (34 sequences, 8 countries including 3 different African countries) Mar 7, 2024
@FedeGueli
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34 sorry i ve edited a previous wrong issue update

@xz-keg
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xz-keg commented Mar 9, 2024

Designated JN.1.8.2

@FedeGueli
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via ce0782a

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