-
Notifications
You must be signed in to change notification settings - Fork 97
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
very new HK.3 (EG.5.1.1.3) sublineage with S:F157L (16 seqs in China) #2193
Comments
Today Shanghai updated 2 seqs with S:F157L but without S:Q146K(?) and ORF1a:T4129I. |
i suggest to ignore 146 |
Please broaden it to just S:F157L @HynnSpylor |
(it is actually the fastest on earth so better to track it completely) |
Thank you for including the partially unaliased Pango name in the title @aviczhl2. With the proliferation of new designations, I think this should be standard practice here. Only the legendary @FedeGueli is capable of knowing and remembering them all! The S:E484S-G485D combo is fascinating. I believe it's the only sequence ever to possess those two mutations. Also interesting is the S:T19L branch. A few months ago I think I remember a number of sequences with T19L popping up around the same time. Haven't seem as many lately though. |
Thanks for reminding me! @FedeGueli |
Designated HK.3.1 from 2d2cdd6 |
Milestone missing @corneliusroemer |
|
@corneliusroemer i was lookin at the new features in the nextclade tree , like looking at frameshift. It points 1 for HK.3.1 is really there? let me check it. |
|
*Transferred from sars-cov-2-variants/lineage-proposals#580
Defining mutations (EDITED):
HK.3>C22033A (S:F157L)
GISAID query: G5720A, G13627A, G22927T, C22033A (EDITED)
Earliest seq: 2023-07-31 (Hubei Province, China- EPI_ISL_18078259)
Most recent seq: 2023-08-09 (Hubei Province, China- EPI_ISL_18105520)
Countries detected: China (16)
Usher Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1af0d_1cfdd0.json?c=gt-S_157
Another branch with S:F157L (which has emerged in EG.5.1.6 lineages). HK.3 is one of lineages with L455F-F456L "exchange" Combo mutations, and this branch (with S:F157L) popped up very recently (in last 15 days). Rapid view may be needed.
*One seq further gets S:A484S and S:G485D
Genomes: (EDITED)
EPI_ISL_18078259, EPI_ISL_18078261-18078262, EPI_ISL_18078265-18078266,
EPI_ISL_18078268-18078269, EPI_ISL_18105513, EPI_ISL_18105515-18105518,
EPI_ISL_18105520, EPI_ISL_18108422, EPI_ISL_18108617,
EPI_ISL_18114704
The text was updated successfully, but these errors were encountered: