XAY.1.1.1+ORF3a:L65F sublineage with S:D420N and S:Y144- (7 seq. Italy, Luxembourg, Spain, Portugal, UK)

[oobb45729]

Transferred from sars-cov-2-variants/lineage-proposals#121.
EPI_ISL_17615116
EPI_ISL_17470214
EPI_ISL_17633261
EPI_ISL_17721921
EPI_ISL_17726266
EPI_ISL_17720236
Substitutions on top of XAY.1.1.1: ORF3a:L65F(C25585T) then nuc:C19441T+S:Y144-+S:D420N(G22820A)

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_7b3f_957f90.json?c=gt-S_420&label=id:node_6218899
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?variantQuery=nextcladePangoLineage%3AXAY.1.1.1*%26C19441T%26S%3AD420N&

[oobb45729]

Correction. Some GL.1s do not have S:Y144-.
For now, all 11 results of the search GL.1+S:Y144Y also have nuc:C26013T. https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?variantQuery=nextcladePangoLineage%3AGL.1*%26S%3AY144Y&.
It seems that GL.1 has two branches. There is one with S:Y144-, and there is one with nuc:C26013T.
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?variantQuery=nextcladePangoLineage%3AGL.1*%26%21C26013T&variantQuery1=nextcladePangoLineage%3AGL.1*%26C26013T&analysisMode=CompareEquals&