From fbfc41e4ca6a133a46fe8107183c670c86fa9197 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 28 May 2024 02:46:40 +0200 Subject: [PATCH] Designate LN.1 (JN.1.53.1.1, S:R346T), LN.1.1 (S:F456L, S:478I) --- lineage_notes.txt | 2 ++ lineages.csv | 16 ++++++++-------- pango_designation/alias_key.json | 1 + 3 files changed, 11 insertions(+), 8 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 785ccbcb..91ae804c 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1230,6 +1230,8 @@ LJ.1 Alias of B.1.1.529.2.86.1.1.51.1.1, S:T22N JN.1.52 Alias of B.1.1.529.2.86.1.1.52, ORF1a:K3353R JN.1.53 Alias of B.1.1.529.2.86.1.1.53, C15720T, Senegal JN.1.53.1 Alias of B.1.1.529.2.86.1.1.53.1, C583T +LN.1 Alias of B.1.1.529.2.86.1.1.53.1.1, S:R346T +LN.1.1 Alias of B.1.1.529.2.86.1.1.53.1.1.1, S:F456L, S:478I JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 diff --git a/lineages.csv b/lineages.csv index 98a769e0..62c7b08c 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2551143,14 +2551143,6 @@ Hubei/HCDC-JM4344/2024,JN.1.53.1 USA/NY-Wadsworth-24011842-01/2024,JN.1.53.1 USA/NY-CDC-LC1100330/2024,JN.1.53.1 USA/NY-Wadsworth-24013939-01/2024,JN.1.53.1 -USA/SD-CDC-2-7705833/2024,JN.1.53.1 -Japan/TKYnat16416/2024,JN.1.53.1 -Japan/TKYnat16226/2024,JN.1.53.1 -France/IDF-RELAB-IPP05580/2024,JN.1.53.1 -France/IDF-RELAB-IPP05446/2024,JN.1.53.1 -USA/NJ-GBW-GKISBBBC60448/2024,JN.1.53.1 -USA/VA-GBW-GKISBBBB27389/2024,JN.1.53.1 -USA/VA-GBW-H10-013-9509/2024,JN.1.53.1 USA/CA-HLX-STM-ZQF55GG23/2024,JN.1.53.1 Mexico/SLP_IBT_IMSS_12728/2024,JN.1.53.1 Mexico/TAM_IBT_IMSS_12454/2024,JN.1.53.1 @@ -2551179,3 +2551171,11 @@ Mexico/VER_IBT_IMSS_12595/2024,JN.1.53.1 Mexico/VER_IBT_IMSS_12628/2024,JN.1.53.1 Mexico/VER_IBT_IMSS_003833_LCE_NC/2024,JN.1.53.1 Mexico/PUE_IBT_IMSS_12596/2024,JN.1.53.1 +USA/SD-CDC-2-7705833/2024,LN.1 +Japan/TKYnat16416/2024,LN.1 +Japan/TKYnat16226/2024,LN.1 +France/IDF-RELAB-IPP05580/2024,LN.1.1 +France/IDF-RELAB-IPP05446/2024,LN.1.1 +USA/NJ-GBW-GKISBBBC60448/2024,LN.1.1 +USA/VA-GBW-GKISBBBB27389/2024,LN.1.1 +USA/VA-GBW-H10-013-9509/2024,LN.1.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index dbb1016a..c4d54a44 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -258,6 +258,7 @@ "LK": "B.1.1.529.2.86.1.1.7.5", "LL": "B.1.1.529.2.86.1.1.4.2", "LM": "B.1.1.529.2.86.1.1.25.1", + "LN": "B.1.1.529.2.86.1.1.53.1", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],