diff --git a/lineage_notes.txt b/lineage_notes.txt index 5b729669..58a903cc 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1108,6 +1108,7 @@ JN.1.27 Alias of B.1.1.529.2.86.1.1.27, S:M153I, after C26894T, C25680T, USA JN.1.28 Alias of B.1.1.529.2.86.1.1.28, C24034T, A29700G, East Asia/Oceania JN.1.29 Alias of B.1.1.529.2.86.1.1.29, ORF1a:T3224A, after C2644T, Brazil JN.1.30 Alias of B.1.1.529.2.86.1.1.30, G21255T +JN.1.31 Alias of B.1.1.529.2.86.1.1.31, ORF3a:V13L, C19186T JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 diff --git a/lineages.csv b/lineages.csv index f25a3b40..6442057a 100644 --- a/lineages.csv +++ b/lineages.csv @@ -476463,7 +476463,6 @@ Canada/NL-NML-85348/2021,AY.10 Canada/NL-NML-85350/2021,AY.10 Canada/NL-NML-85354/2021,AY.10 Canada/NL-NML-85358/2021,AY.10 -env/India/GJ-GBRC747a/2021,B.1.617.2 Scotland/QEUH-160F16F/2021,AY.4 Scotland/QEUH-160F3B4/2021,AY.4 Scotland/QEUH-1618619/2021,AY.4 @@ -530008,7 +530007,6 @@ Germany/HE-RKI-I-126964/2021,AZ.2 Germany/BE-RKI-I-129539/2021,AZ.2 Germany/HE-RKI-I-136934/2021,AZ.2 Belgium/UMONS-J691599601/2021,AZ.2 -env/Austria/CeMM8339/2021,AZ.2 France/IDF-HMN-21052050050/2021,AZ.2 France/IDF-HMN-21052050074/2021,AZ.2 France/IDF-HMN-21052050080/2021,AZ.2 @@ -530035,7 +530033,6 @@ Greece/197447/2021,AZ.2 Germany/BE-RKI-I-158144/2021,AZ.2 Austria/CeMM8925/2021,AZ.2 Austria/CeMM8926/2021,AZ.2 -env/Austria/CeMM8975/2021,AZ.2 Lithuania/LTU000_KNS_ANT_05_03_65/2021,AZ.2 Greece/161835/2021,AZ.2 Greece/168602/2021,AZ.2 @@ -599427,7 +599424,6 @@ Brazil/SP-2823/2021,P.1.14 Brazil/SP-2830/2021,P.1.14 Brazil/SP-2853/2021,P.1.14 Brazil/SP-2857/2021,P.1.14 -env/Brazil/SP-2917/2021,P.1.14 Portugal/PT8515/2021,P.1.14 Canada/ON-PHL-21-18946/2021,P.1.14 Canada/ON-PHL-21-19278/2021,P.1.14 @@ -634564,8 +634560,6 @@ Brazil/SP-2855/2021,P.1 Brazil/SP-2856/2021,P.1 Brazil/SP-2858/2021,P.1 Brazil/SP-2888/2021,P.1 -env/Brazil/SP-2915/2021,P.1 -env/Brazil/SP-2916/2021,P.1 Brazil/SP-2926/2021,P.1 Brazil/SP-2928/2021,P.1 Brazil/SP-2933/2021,P.1 @@ -659411,8 +659405,6 @@ Suriname/SR-461/2021,P.1 Suriname/SR-463/2021,P.1 France/NAQ-CHU-TLS-212011426801/2021,P.1 France/OCC-CHU-TLS-212031432201/2021,P.1 -env/USA/CA-ALSR-42367/2021,P.1 -env/USA/CA-ALSR-42370/2021,P.1 France/IDF-HMN-21072300212/2021,P.1 Canada/BC-BCCDC-94082/2021,P.1 Canada/BC-BCCDC-94096/2021,P.1 @@ -661293,7 +661285,6 @@ Germany/BE-RKI-I-249701/2021,AY.4.4 Poland/1310WSN2021_wsseol/2021,AY.4.4 Lithuania/LTU000_INMEDICA_666801/2021,AY.4.4 Denmark/DCGC-173713/2021,AY.4.4 -env/Austria/CeMM16327/2021,AY.4.4 Poland/PL_P3883/2021,AY.4.4 Slovakia/UVZ_PL36_C1_17749/2021,AY.4.4 Slovakia/UVZ_PL38_A10_18231/2021,AY.4.4 @@ -663229,9 +663220,6 @@ Austria/CeMM13141/2021,AY.41 Austria/CeMM13162/2021,AY.41 Austria/CeMM13166/2021,AY.41 Austria/CeMM13178/2021,AY.41 -env/Austria/CeMM13230/2021,AY.41 -env/Austria/CeMM13236/2021,AY.41 -env/Austria/CeMM13262/2021,AY.41 Germany/NW-HHU-7996/2021,AY.41 Germany/NW-HHU-8021/2021,AY.41 Italy/FVG-UD-337334/2021,AY.41 @@ -663246,7 +663234,6 @@ Sweden/01_SE100_21CS505864/2021,AY.41 Sweden/01_SE100_21CS505918/2021,AY.41 Germany/NW-HHU-8236/2021,AY.41 Germany/NW-HHU-8240/2021,AY.41 -env/Austria/CeMM13652/2021,AY.41 Austria/CeMM13599/2021,AY.41 Austria/CeMM13552/2021,AY.41 Austria/CeMM13591/2021,AY.41 @@ -663343,8 +663330,6 @@ Austria/CeMM13860/2021,AY.41 Austria/CeMM13863/2021,AY.41 Austria/CeMM13896/2021,AY.41 Austria/CeMM13938/2021,AY.41 -env/Austria/CeMM13998/2021,AY.41 -env/Austria/CeMM14000/2021,AY.41 Slovenia/08-147284-MB/2021,AY.41 Slovenia/08-147684-MB/2021,AY.41 Slovenia/08-147806-MB/2021,AY.41 @@ -663485,8 +663470,6 @@ Austria/CeMM14244/2021,AY.41 Austria/CeMM14275/2021,AY.41 Austria/CeMM14291/2021,AY.41 Austria/CeMM14303/2021,AY.41 -env/Austria/CeMM14401/2021,AY.41 -env/Austria/CeMM14402/2021,AY.41 Austria/CeMM14345/2021,AY.41 Italy/FVG-UD-358619/2021,AY.41 Italy/FVG-UD-358623/2021,AY.41 @@ -692266,7 +692249,6 @@ Sweden/21-241276/2021,AY.43 Sweden/21-241140/2021,AY.43 Sweden/21-241379/2021,AY.43 Austria/CeMM14634/2021,AY.43 -env/Austria/CeMM14863/2021,AY.43 Italy/LOM-665121_20210824080700/2021,AY.43 Sweden/01_SE100_21CS508100/2021,AY.43 Norway/17039/2021,AY.43 @@ -694946,8 +694928,6 @@ Austria/CeMM15760/2021,AY.43 Austria/CeMM15794/2021,AY.43 Austria/CeMM15875/2021,AY.43 Austria/CeMM15898/2021,AY.43 -env/Austria/CeMM15923/2021,AY.43 -env/Austria/CeMM15915/2021,AY.43 Italy/EMR_AUSLRomagna_C076-21-21/2021,AY.43 Italy/EMR_AUSLRomagna_C077-21-11/2021,AY.43 Italy/EMR_AUSLRomagna_C078-21-33/2021,AY.43 @@ -695245,8 +695225,6 @@ Denmark/DCGC-174265/2021,AY.43 Denmark/DCGC-174390/2021,AY.43 Spain/GA-CHUVI-19429573/2021,AY.43 Austria/CeMM16185/2021,AY.43 -env/Austria/CeMM16272/2021,AY.43 -env/Austria/CeMM16264/2021,AY.43 Austria/CeMM16051/2021,AY.43 Austria/CeMM16167/2021,AY.43 France/BRE-IPP26754/2021,AY.43 @@ -696147,7 +696125,6 @@ Croatia/9216/2021,AY.43 USA/NY-PRL-2021_0930_01B07/2021,AY.43 Spain/MC-HCUVA-11093675/2021,AY.43 Italy/LIG-199060226/2021,AY.43 -env/Austria/CeMM17195/2021,AY.43 Austria/CeMM16910/2021,AY.43 Austria/CeMM16900/2021,AY.43 Switzerland/GE-DIA-011426587801/2021,AY.43 @@ -704221,7 +704198,6 @@ Austria/CeMM15884/2021,AY.43 Austria/CeMM15886/2021,AY.43 Austria/CeMM15893/2021,AY.43 Austria/CeMM14825/2021,AY.43 -env/Austria/CeMM15909/2021,AY.43 Belgium/rega-14182/2021,AY.43 Spain/CT-HUGTiPM042AQ2C7/2021,AY.43 Spain/CT-HUGTiPM042AQ2G7/2021,AY.43 @@ -705779,10 +705755,8 @@ Austria/CeMM16867/2021,AY.43 Austria/CeMM16750/2021,AY.43 Austria/CeMM16734/2021,AY.43 Austria/CeMM16882/2021,AY.43 -env/Austria/CeMM17042/2021,AY.43 Austria/CeMM16948/2021,AY.43 Austria/CeMM16940/2021,AY.43 -env/Austria/CeMM17128/2021,AY.43 Belgium/UMONS-P02-95679-01/2021,AY.43 Portugal/PT17955/2021,AY.43 Denmark/DCGC-180293/2021,AY.43 @@ -706773,7 +706747,6 @@ Austria/CeMM12923/2021,AY.43 Austria/CeMM12929/2021,AY.43 Austria/CeMM12935/2021,AY.43 Austria/CeMM13170/2021,AY.43 -env/Austria/CeMM13213/2021,AY.43 Italy/VEN-IZSVe-21RS8006-3_RO/2021,AY.43 Italy/VEN-IZSVe-21RS8001-18_VI/2021,AY.43 Denmark/DCGC-136881/2021,AY.43 @@ -711424,7 +711397,6 @@ Austria/CeMM15377/2021,AY.43 Austria/CeMM15429/2021,AY.43 Austria/CeMM14818/2021,AY.43 Austria/CeMM14820/2021,AY.43 -env/Austria/CeMM15564/2021,AY.43 Belgium/ULG-19059/2021,AY.43 Belgium/ULG-19086/2021,AY.43 Poland/WSSEGorzow-21S0254/2021,AY.43 @@ -718889,7 +718861,6 @@ Sweden/DC112272491/2021,AY.43 Sweden/DC112272571/2021,AY.43 Sweden/DC112276811/2021,AY.43 Sweden/21-241279/2021,AY.43 -env/Austria/CeMM14884/2021,AY.43 Austria/CeMM14747/2021,AY.43 Italy/LOM-664281_20210823081000/2021,AY.43 Sweden/01_SE100_21CS508186/2021,AY.43 @@ -723722,7 +723693,6 @@ Austria/CeMM16671/2021,AY.43.8 Austria/CeMM16500/2021,AY.43 Austria/CeMM16496/2021,AY.43 Austria/CeMM16624/2021,AY.43 -env/Austria/CeMM16391/2021,AY.43 Austria/CeMM16352/2021,AY.43 Austria/CeMM16344/2021,AY.43 Austria/CeMM16461/2021,AY.43 @@ -734411,7 +734381,6 @@ Sweden/SUS0005005/2021,AY.43 Sweden/SUS0005044/2021,AY.43 Sweden/SUS0005058/2021,AY.43 Sweden/SUS0005083/2021,AY.43 -env/Austria/CeMM17040/2021,AY.43 Austria/CeMM16847/2021,AY.43 Austria/CeMM16825/2021,AY.43 Austria/CeMM16986/2021,AY.43 @@ -775090,7 +775059,6 @@ South_Africa/NICD-N15763/2021,AY.46 South_Africa/NICD-N15800/2021,AY.46 South_Africa/NICD-N14382/2021,AY.46 Austria/CeMM16451/2021,AY.46 -env/Austria/CeMM16388/2021,AY.46 Georgia/Tb-SNGS1405/2021,AY.46 Austria/CeMM16388/2021,AY.46 Sweden/01_SE100_21CS510730/2021,AY.46 @@ -779151,7 +779119,6 @@ Austria/CeMM14921/2021,AY.46.6 Austria/CeMM14922/2021,AY.46.6 Austria/CeMM14939/2021,AY.46.6 Austria/CeMM14947/2021,AY.46.6 -env/Austria/CeMM15335/2021,AY.46.6 Belgium/ULG-19073/2021,AY.46.6 Italy/LAZ-UCBM-493/2021,AY.46.6 Italy/LAZ-UCBM-456/2021,AY.46.6 @@ -779955,8 +779922,6 @@ Austria/CeMM15744/2021,AY.46.6 Austria/CeMM15763/2021,AY.46.6 Austria/CeMM15773/2021,AY.46.6 Austria/CeMM15844/2021,AY.46.6 -env/Austria/CeMM15924/2021,AY.46.6 -env/Austria/CeMM15949/2021,AY.46.6 Austria/CeMM15960/2021,AY.46.6 Austria/CeMM15961/2021,AY.46.6 Italy/EMR_AUSLRomagna_C077-21-01/2021,AY.46.6 @@ -780472,10 +780437,8 @@ Austria/CeMM16255/2021,AY.46.6 Austria/CeMM16065/2021,AY.46.6 Austria/CeMM16073/2021,AY.46.6 Austria/CeMM16074/2021,AY.46.6 -env/Austria/CeMM16309/2021,AY.46.6 Austria/CeMM16243/2021,AY.46.6 Austria/CeMM16119/2021,AY.46.6 -env/Austria/CeMM16333/2021,AY.46.6 Austria/CeMM15996/2021,AY.46.6 Austria/CeMM16007/2021,AY.46.6 Austria/CeMM16015/2021,AY.46.6 @@ -781487,7 +781450,6 @@ Austria/CeMM16571/2021,AY.46.6 Austria/CeMM16565/2021,AY.46.6 Austria/CeMM16351/2021,AY.46.6 Austria/CeMM16395/2021,AY.46.6 -env/Austria/CeMM16340/2021,AY.46.6 Austria/CeMM16399/2021,AY.46.6 Austria/CeMM16340/2021,AY.46.6 Sweden/01_SE100_21CS510732/2021,AY.46.6 @@ -782468,7 +782430,6 @@ USA/WI-WSLH-220032/2021,AY.46.6 Italy/LIG-199060166/2021,AY.46.6 Sweden/SUS0004996/2021,AY.46.6 Sweden/SUS0005041/2021,AY.46.6 -env/Austria/CeMM17056/2021,AY.46.6 Austria/CeMM16967/2021,AY.46.6 Austria/CeMM16774/2021,AY.46.6 Switzerland/GE-DIA-161343385901/2021,AY.46.6 @@ -802735,7 +802696,6 @@ Bulgaria/21BG-EU_004180_Pl36/2021,AY.68 Bulgaria/21BG-EU_004200_Pl36/2021,AY.68 Bulgaria/21BG-EU_004203_Pl36/2021,AY.68 Czech_Republic/UMTM247017/2021,AY.68 -env/Austria/CeMM14868/2021,AY.68 Austria/CeMM14586/2021,AY.68 Austria/CeMM14362/2021,AY.68 Poland/PL_P3706/2021,AY.68 @@ -809977,7 +809937,6 @@ Belgium/rega-12852/2021,AY.70 Belgium/rega-12862/2021,AY.70 Belgium/rega-13470/2021,AY.70 Belgium/rega-13489/2021,AY.70 -env/Austria/CeMM15941/2021,AY.70 Belgium/rega-14192/2021,AY.70 Belgium/rega-14199/2021,AY.70 Belgium/rega-14203/2021,AY.70 @@ -811053,7 +811012,6 @@ Turkey/HSGM-E7462/2021,AY.71 Turkey/HSGM-E7662/2021,AY.71 Switzerland/GE-HUG-35555923/2021,AY.71 Austria/CeMM16964/2021,AY.71 -env/Austria/CeMM17196/2021,AY.71 Belgium/UMONS-P02-88735-01/2021,AY.71 Germany/BY-MVP-000007784/2021,AY.71 Germany/BY-MVP-000007707/2021,AY.71 @@ -846962,7 +846920,6 @@ Czech_Republic/LH41159/2021,AY.84 Switzerland/BL-ETHZ-34092123/2021,AY.84 Italy/LAZ-INMI-2450/2021,AY.84 Slovakia/UKBA-4992/2021,AY.84 -env/Austria/CeMM17049/2021,AY.84 Montenegro/CO-00421_MNE000_2817412102/2021,AY.84 Montenegro/CO-00421_MNE000_2819522102/2021,AY.84 Slovenia/349815/2021,AY.84 @@ -854921,7 +854878,6 @@ Netherlands/ZH-RIVM-62435/2021,AY.98 USA/NY-PRL-2021_0930_02C08/2021,AY.98 USA/CT-JAX-JAX-2140-009/2021,AY.98 Austria/CeMM16875/2021,AY.98 -env/Austria/CeMM17188/2021,AY.98 Poland/WSSEGorzow-21S0696/2021,AY.98 Italy/SIC-CQRC-2393864/2021,AY.98 Italy/SIC-CQRC-21091800/2021,AY.98 @@ -861588,8 +861544,6 @@ France/BRE-IPP19840/2021,AY.98.1 France/CVL-IPP20216/2021,AY.98.1 Austria/CeMM14096/2021,AY.98.1 Austria/CeMM14161/2021,AY.98.1 -env/Austria/CeMM14410/2021,AY.98.1 -env/Austria/CeMM14411/2021,AY.98.1 France/OCC-CERBAHC-0736812/2021,AY.98.1 France/OCC-CERBAHC-0737477/2021,AY.98.1 France/OCC-CERBAHC-0737564/2021,AY.98.1 @@ -863784,7 +863738,6 @@ Denmark/DCGC-173365/2021,AY.98.1 Ireland/KE-NVRL-M36IRL57472/2021,AY.98.1 Austria/CeMM15640/2021,AY.98.1 Austria/CeMM15780/2021,AY.98.1 -env/Austria/CeMM15931/2021,AY.98.1 Italy/EMR_AUSLRomagna_C076-21-11/2021,AY.98.1 Italy/LOM_Niguarda_56057578CAV/2021,AY.98.1 Belgium/AZDelta-07830-2136R/2021,AY.98.1 @@ -905905,7 +905858,6 @@ USA/NY-Wadsworth-21080343-01/2021,AY.119 USA/NY-Wadsworth-21080353-01/2021,AY.119.2 USA/CA-LACPHL-AF01893/2021,AY.119 USA/AR-UMGC-7553/2021,AY.119 -env/USA/CA-ALSR-42525/2021,AY.119 USA/MS-UMMC-M748B9-506456/2021,AY.119 USA/MS-UMMC-M748E12-506458/2021,AY.119 USA/MS-UMMC-M764B6-506653/2021,AY.119 @@ -997213,16 +997165,6 @@ Uzbekistan/399/2021,AY.122 Uzbekistan/414/2021,AY.122 Uzbekistan/Tashkent-CGB-33/2021,AY.122 Uzbekistan/Tashkent-CGB-45/2021,AY.122 -env/Austria/CeMM14885/2021,AY.122 -env/Austria/CeMM15548/2021,AY.122 -env/Austria/CeMM15926/2021,AY.122 -env/Austria/CeMM15937/2021,AY.122 -env/Austria/CeMM16303/2021,AY.122 -env/Austria/CeMM16356/2021,AY.122 -env/Austria/CeMM16377/2021,AY.122 -env/Austria/CeMM16429/2021,AY.122 -env/Austria/CeMM17038/2021,AY.122 -env/Austria/CeMM17189/2021,AY.122 Israel/SMC-7004101/2021,AY.122.1 Israel/SMC-7004102/2021,AY.122.1 Israel/SMC-7004103/2021,AY.122.1 @@ -999351,7 +999293,6 @@ Mexico/DUR_IBT_IMSS_1441/2021,B.1.634 Mexico/NLE_IBT_IMSS_1751/2021,B.1.634 USA/CA-CDC-ASC210156327/2021,B.1.634 USA/CA-CDC-LC0101856/2021,B.1.634 -env/USA/CA-ALSR-42327/2021,B.1.634 USA/CA-CDC-LC0144400/2021,B.1.634 USA/UT-UPHL-210823054775/2021,B.1.634 USA/CO-CDPHE-2101392264/2021,B.1.634 @@ -999872,8 +999813,6 @@ USA/WA-Altius-ALTCOV-BODLXM2OSNGDWLXX/2021,XB USA/WA-Altius-ALTCOV-BYQVGI2GHURI2AAD/2021,XB USA/WA-PHL-001176/2021,XB USA/FL-CDC-ASC210154991/2021,XB -env/USA/CA-SEARCH-36258/2021,XB -env/USA/CA-SEARCH-36262/2021,XB USA/WI-WSLH-216037/2021,XB USA/WI-WSLH-216097/2021,XB USA/WI-WSLH-216151/2021,XB @@ -1000056,8 +999995,6 @@ USA/FL-TGH-1344/2021,XB USA/IA-SHL-1752871/2021,XB USA/IA-SHL-1752892/2021,XB USA/IA-SHL-1753001/2021,XB -env/USA/CA-ALSR-42263/2021,XB -env/USA/CA-ALSR-42336/2021,XB Spain/MD-H12O_949/2021,XB Spain/MD-H12O_941/2021,XB USA/CA-LACPHL-AF01960/2021,XB @@ -1005563,7 +1005500,6 @@ Chile/RM-148913/2021,AY.124 Spain/CT-HUGTiPR027JB2E9/2021,AY.124 Chile/RM-152860/2021,AY.124 Austria/CeMM16666/2021,AY.124 -env/Austria/CeMM16422/2021,AY.124 Germany/BY-CeMM16611/2021,AY.124 Chile/VS-152706/2021,AY.124 Spain/CT-HUB02180/2021,AY.124 @@ -1008294,7 +1008230,6 @@ Germany/BY-RKI-I-191370/2021,AY.125 Germany/BY-RKI-I-191372/2021,AY.125 Germany/NW-RKI-I-191404/2021,AY.125 Germany/BE-RKI-I-191592/2021,AY.125 -env/Austria/CeMM13216/2021,AY.125 Italy/VEN-IZSVe-21RS1840-24_TV/2021,AY.125 Italy/VEN-IZSVe-21RS1840-19_TV/2021,AY.125 Italy/VEN-IZSVe-21RS1840-1_TV/2021,AY.125 @@ -1012630,8 +1012565,6 @@ Belgium/ULG-20581/2021,AY.125 Croatia/9268/2021,AY.125 Spain/GA-SCQ-625505/2021,AY.125 Sweden/SUS0005065/2021,AY.125 -env/Austria/CeMM17179/2021,AY.125 -env/Austria/CeMM17044/2021,AY.125 Portugal/PT17775/2021,AY.125 Portugal/PT17777/2021,AY.125 Portugal/PT17791/2021,AY.125 @@ -1016993,7 +1016926,6 @@ Belgium/rega-16124/2021,AY.125 Belgium/rega-16134/2021,AY.125 Spain/CT-HUGTiPR027JB2D12/2021,AY.125 Austria/CeMM16651/2021,AY.125 -env/Austria/CeMM16375/2021,AY.125 Austria/CeMM16640/2021,AY.125 Austria/CeMM16714/2021,AY.125 Spain/MD-H12O_1269/2021,AY.125 @@ -1034934,7 +1034866,6 @@ Belgium/MBLGPF996984/2021,AY.126 Austria/CeMM14036/2021,AY.126 Austria/CeMM14039/2021,AY.126 Austria/CeMM14051/2021,AY.126 -env/Austria/CeMM14419/2021,AY.126 Pakistan/NIH-B14-S15/2021,AY.126 USA/WI-WSLH-217220/2021,AY.126 Denmark/DCGC-155187/2021,AY.126 @@ -1084436,8 +1084367,6 @@ United_States/TX-HHD-2109240805/2021,AY.100 United_States/TX-HHD-2109240822/2021,AY.100 United_States/TX-HHD-2109240843/2021,AY.100 United_States/TX-HHD-2109240911/2021,AY.100 -env/USA/CA-SEARCH-55212/2021,AY.100 -env/USA/CA-SEARCH-55238/2021,AY.100 Hong_Kong/VM21044713-1/2021,BA.1 Botswana/R40B59_BHP_3321001248/2021,BA.1.17 Botswana/R40B60_BHP_3321001247/2021,BA.1.17 @@ -1091109,8 +1091038,6 @@ USA/WY-WYPHL-21100829/2021,AY.119.2 USA/WY-WYPHL-21102118/2021,AY.119.2 USA/WY-WYPHL-21103761/2021,AY.119.2 USA/WY-WYPHL-21110800/2021,AY.119.2 -env/USA/CA-SEARCH-55304/2021,AY.119.2 -env/USA/CA-SEARCH-55344/2021,AY.119.2 Aruba/AW-RIVM-46271/2021,AY.4.7 Aruba/AW-RIVM-46308/2021,AY.4.7 Aruba/AW-RIVM-46318/2021,AY.4.7 @@ -1140211,7 +1140138,6 @@ USA/WY-WYPHL-21111653/2021,AY.25.1 USA/un-JAX-11536385/2021,AY.25.1 United_States/TX-HHD-2109223466/2021,AY.25.1 United_States/TX-HHD-2109240949/2021,AY.25.1 -env/USA/CA-SEARCH-55151/2021,AY.25.1 Peru/LIM-INS-4482/2021,AY.25.1.1 Peru/CAJ-INS-4831/2021,AY.25.1.1 USA/CA-CDPH-3000128571/2021,AY.25.1.1 @@ -1145786,7 +1145712,6 @@ Austria/CeMM16171/2021,AY.129 Austria/CeMM16174/2021,AY.129 Austria/CeMM16239/2021,AY.129 Austria/CeMM16242/2021,AY.129 -env/Austria/CeMM16334/2021,AY.129 Austria/CeMM16084/2021,AY.129 Austria/CeMM16087/2021,AY.129 Austria/CeMM16094/2021,AY.129 @@ -1146672,7 +1146597,6 @@ Slovenia/368129/2021,AY.129 Slovenia/368133/2021,AY.129 Slovenia/368148/2021,AY.129 Canada/BC-BCCDC-178266/2021,AY.129 -env/Austria/CeMM17500/2021,AY.129 Austria/CeMM17444/2021,AY.129 Austria/CeMM17411/2021,AY.129 Austria/CeMM17491/2021,AY.129 @@ -1152463,8 +1152387,6 @@ Israel/SMC-7019475/2021,AY.4 Israel/SMC-7021500/2021,AY.4 Israel/SMC-7020250/2021,AY.4 Israel/ICH-760595091/2021,AY.4 -env/Austria/CeMM19729/2021,AY.4 -env/Austria/CeMM19750/2021,AY.4 England/MILK-158FA8B/2021,AY.4 England/ALDP-15F4201/2021,AY.4 England/ALDP-15EF44F/2021,AY.4 @@ -1360280,7 +1360202,6 @@ USA/TN-CDC-ASC210559222/2021,BA.1.20 USA/IL-CDC-ASC210559767/2021,BA.1.20 USA/TN-CDC-ASC210559181/2021,BA.1.20 USA/CA-CDC-QDX32186324/2021,BA.1.20 -env/USA/CA-SEARCH-63588/2021,BA.1.20 USA/MS-SRL_331655610/2021,BA.1.20 USA/CO-CDPHE-2102475427/2021,BA.1.20 Poland/PZH-UMB-6716/2022,BA.1.20 @@ -1364383,7 +1364304,6 @@ Spain/CL-COV23980/2022,BA.1.20 USA/WI-CDC-LC0513600/2022,BA.1.20 USA/WI-CDC-LC0513624/2022,BA.1.20 USA/CA-SEARCH-70596/2022,BA.1.20 -env/USA/CA-SEARCH-70398/2022,BA.1.20 USA/CA-SEARCH-70462/2022,BA.1.20 USA/CA-SEARCH-69980/2022,BA.1.20 USA/CA-SEARCH-69991/2022,BA.1.20 @@ -2119540,9 +2119460,6 @@ USA/CA-CDC-QDX39258771/2022,BA.4.6.5 USA/CA-CDC-QDX39340957/2022,BA.4.6.5 USA/CA-CDC-QDX39020325/2022,BA.4.6.5 USA/CA-CDC-QDX40373277/2022,BA.4.6.5 -env/USA/CA-SEARCH-206364/2022,BA.4.6.5 -env/USA/CA-SEARCH-206308/2022,BA.4.6.5 -env/USA/CA-SEARCH-206463/2022,BA.4.6.5 USA/IL-RIPHL_31670_G/2022,BA.4.6.5 USA/IL-CDC-QDX40314051/2022,BA.4.6.5 Denmark/DCGC-569182/2022,BA.4.6.5 @@ -2138951,7 +2138868,6 @@ Japan/TKYmbc14330/2022,BN.1.3.5 USA/HI-H2218398/2022,BN.1.3.5 Belgium/LHUB-ULB_SRF847/2022,BN.1.3.5 Japan/TKYkbm81418/2023,BN.1.3.5 -env/USA/CA-SEARCH-216693/2022,BN.1.3.5 Australia/ACT10092/2022,BN.1.3.5 Luxembourg/LNS8160314/2022,BN.1.3.5 Lithuania/MB221130_0145/2022,BN.1.3.5 @@ -2139037,7 +2138953,6 @@ Australia/NSW-ICPMR-40730/2023,BN.1.3.5 Japan/TKYkbm71974/2022,BN.1.3.5 Austria/AGES-1167392/2022,BN.1.3.5 Canada/ON-PHL-22-59579/2022,BN.1.3.5 -env/USA/CA-SEARCH-216698/2022,BN.1.3.5 Sweden/SUS0019711/2022,BN.1.3.5 Japan/PG-424046/2022,BN.1.3.5 Singapore/16080/2022,BN.1.3.5 @@ -2159863,15 +2159778,12 @@ USA/NC-CDC-LC0968828/2022,BF.39 USA/NC-CORVASEQ-CLT-013635/2022,BF.39 USA/CA-CDPH-6000013772/2022,BF.39 USA/CA-CDC-LC0956223/2022,BF.39 -env/USA/CA-SEARCH-213895/2022,BF.39 USA/CA-CDPH-500081712/2022,BF.39 USA/CA-CDPH-500081787/2022,BF.39 USA/CA-CDC-LC0925551/2022,BF.39 -env/USA/CA-SEARCH-213834/2022,BF.39 England/LSPA-326709F2/2022,BF.39 USA/TX-CDC-QDX44166360/2022,BF.39 USA/CA-CDC-STM-SWNE2PNYJ/2022,BF.39 -env/USA/CA-SEARCH-213897/2022,BF.39 USA/ID-IBL-862820/2022,BF.39 USA/CA-CDC-STM-CF2CA66TZ/2022,BF.39 USA/CA-CDC-STM-Z4VGU4958/2022,BF.39 @@ -2168544,13 +2168456,8 @@ USA/WA-CDC-UW41704/2022,BQ.1.1.57 USA/CA-CDC-LC0982048/2022,BQ.1.1.57 USA/CA-CDC-STM-9AGYS9JB5/2022,BQ.1.1.57 USA/CA-CDC-STM-PETQ2YA68/2022,BQ.1.1.57 -env/USA/CA-SEARCH-216576/2022,BQ.1.1.57 -env/USA/CA-SEARCH-216710/2022,BQ.1.1.57 USA/CA-CDPH-500081788/2022,BQ.1.1.57 USA/CA-CDC-STM-R8FP5YFSX/2022,BQ.1.1.57 -env/USA/CA-SEARCH-216690/2022,BQ.1.1.57 -env/USA/CA-SEARCH-216712/2022,BQ.1.1.57 -env/USA/CA-SEARCH-216513/2022,BQ.1.1.57 USA/CA-CDC-STM-5765PZCHS/2022,BQ.1.1.57 USA/CA-SEARCH-218083/2022,BQ.1.1.57 USA/CA-SEARCH-218092/2022,BQ.1.1.57 @@ -2201521,10 +2201428,8 @@ USA/CA-CDC-LC0945105/2022,XBB.2.5 USA/CA-CDC-LC0950792/2022,XBB.2.5 USA/CA-CDC-STM-6496TPDHA/2022,XBB.2.5 USA/VA-CAV_VAS3N_00016784_01/2022,XBB.2.5 -env/USA/CA-SEARCH-216528/2022,XBB.2.5 USA/CA-SEARCH-218536/2022,XBB.2.5 USA/CA-CDC-STM-SG5QJNHQ4/2022,XBB.2.5 -env/USA/CA-SEARCH-216520/2022,XBB.2.5 England/BRBR-32664117/2022,XBB.2.5 England/BRBR-326649B5/2022,XBB.2.5 England/BRBR-32664241/2022,XBB.2.5 @@ -2232257,7 +2232162,6 @@ USA/IA-CDC-LC0984060/2023,BQ.1.1 Germany/BW-RKI-I-1109804/2023,BQ.1.1 USA/TX-CDC-STM-DY9VRTKUS/2022,BQ.1.1 Israel/ICH-741192164/2022,BQ.1.1 -env/Austria/CeMM34626/2023,BQ.1.1 USA/SC-CDC-QDX43989740/2022,BQ.1.1 Canada/BC-BCCDC-589204/2023,BQ.1.1 Brazil/RS-GAIHN-01-0106-P/2022,BQ.1.1 @@ -2232648,7 +2232552,6 @@ Croatia/HZJZ_2764/2023,BQ.1.1 USA/CO-IVY-G43P91M6/2022,BQ.1.1 Denmark/DCGC-612128/2022,BQ.1.1 Switzerland/BL-ETHZ-38007226/2022,BQ.1.1 -env/USA/CA-SEARCH-216711/2022,BQ.1.1 USA/PA-CDC-QDX45389844/2023,BQ.1.1 USA/NM-CDC-LC0938549/2022,BQ.1.1 USA/MD-CDC-LC0951887/2022,BQ.1.1 @@ -2232770,7 +2232673,6 @@ USA/TX-TAMGHRC-SHS_87339/2022,BQ.1.1 USA/CA-Stanford-121_S28/2022,BQ.1.1 Austria/AGES-1110772/2023,BQ.1.1 England/PHEP-YYF6YEQ/2022,BQ.1.1 -env/Austria/CeMM34509/2023,BQ.1.1 USA/IL-RIPHL_90496_G/2022,BQ.1.1 USA/KS-CDC-2-6776458/2023,BQ.1.1 Spain/VC-CVA_ALIC-116052/2022,BQ.1.1 @@ -2234428,7 +2234330,6 @@ Brazil/ES-NVBS28638GENOV702517393957/2022,BQ.1.1 USA/FL-CDC-QDX46945450/2023,BQ.1.1 USA/NY-PRL-221028_03C11/2022,BQ.1.1 Ghana/NMIMR-NUR-22-4869/2022,BQ.1.1 -env/Austria/CeMM34472/2023,BQ.1.1 Canada/AB-ABPHL-89564/2022,BQ.1.1 Denmark/DCGC-597867/2022,BQ.1.1 USA/CA-CDC-LC1008263/2023,BQ.1.1 @@ -2234533,7 +2234434,6 @@ USA/CA-CDPH-500099740/2023,BQ.1.1 England/LSPA-326143D4/2022,BQ.1.1 Slovakia/BA_23_00001027/2023,BQ.1.1 USA/NC-CDC-LC0967795/2022,BQ.1.1 -env/USA/CA-SEARCH-216747/2022,BQ.1.1 USA/CA-CDPH-FS48083274/2022,BQ.1.1 USA/DC-CDC-LC0927651/2022,BQ.1.1 USA/ND-NDDH-20897/2022,BQ.1.1 @@ -2234751,7 +2234651,6 @@ Sweden/SUS0020611/2023,BQ.1.1 Canada/ON-PHL-11376/2023,BQ.1.1 USA/OR-CDC-LC0961016/2022,BQ.1.1 USA/NV-CDC-LC0983629/2022,BQ.1.1 -env/USA/CA-SEARCH-216597/2022,BQ.1.1 USA/TN-CDC-QDX44021109/2022,BQ.1.1 France/HDF-IPP57084/2022,BQ.1.1 USA/SC-CDC-QDX45341499/2023,BQ.1.1 @@ -2239859,7 +2239758,6 @@ France/ARA-LBZCentre-48913320163/2022,BQ.1.1 Switzerland/GE-DIA-011616271101/2022,BQ.1.1 USA/TX-HMH-123011/2023,BQ.1.1 France/OCC-HCL723000030001/2023,BQ.1.1 -env/USA/CA-SEARCH-216460/2022,BQ.1.1 Canada/QC-L00571014001/2022,BQ.1.1 Israel/ICH-741191287/2022,BQ.1.1 Austria/MUIV-0621/2022,BQ.1.1 @@ -2240253,7 +2240151,6 @@ England/PHEC-YY81JCU/2022,BQ.1.1 Spain/CL-39303/2022,BQ.1.1 USA/GA-CDC-STM-6E2GS7CJ9/2022,BQ.1.1 Australia/WA9188/2022,BQ.1.1 -env/USA/CA-SEARCH-216595/2022,BQ.1.1 France/GES-HMN-22112250248/2022,BQ.1.1 Canada/QC-L00558601001/2022,BQ.1.1 Israel/ICH-741191908/2022,BQ.1.1 @@ -2242057,7 +2241954,6 @@ USA/NJ-CDC-LC1002304/2023,XBB.1.5 USA/NJ-PHEL-V22054879/2022,XBB.1.5 USA/DE-DHSS-B1268182/2023,XBB.1.5 Australia/NSW-NSWHP-41886/2023,XBB.1.5 -env/Austria/CeMM-34718/2023,XBB.1.5 Austria/AGES-1119383/2023,XBB.1.5 USA/CA-SCPHL-23WGS00266/2023,XBB.1.5 USA/NY-PRL-221205_00C15/2022,XBB.1.5 @@ -2244682,7 +2244578,6 @@ USA/PA-CDC-QDX45739928/2023,XBB.1.5 USA/NY-PRL-221121_00H21/2022,XBB.1.5 USA/CA-CDC-QDX46500903/2023,XBB.1.5 USA/PA-CDC-QDX45592228/2023,XBB.1.5 -env/Austria/CeMM34910/2023,XBB.1.5 USA/IL-CDC-LC0999809/2023,XBB.1.5 USA/TX-HHD-2301278532/2023,XBB.1.5 USA/TX-CDC-QDX46826570/2023,XBB.1.5 @@ -2245484,7 +2245379,6 @@ USA/MO-CDC-VSX-A061899/2023,XBB.1.5 USA/PA-CDC-QDX45739852/2023,XBB.1.5 Canada/ON-PHL-23-12592/2023,XBB.1.5 USA/NY-CDC-LC0980499/2023,XBB.1.5 -env/Austria/CeMM34981/2023,XBB.1.5 USA/NJ-CDC-QDX45739888/2023,XBB.1.5 USA/CA-CDC-STM-6D82AF68Y/2023,XBB.1.5 USA/NY-CDC-LC0979222/2023,XBB.1.5 @@ -2246440,7 +2246334,6 @@ Canada/ON-PHL-23-12792/2023,XBB.1.5 Spain/PV-HUD-78352156/2023,XBB.1.5 USA/TX-HMH-M-126516/2023,XBB.1.5 USA/TX-CDC-QDX45529548/2023,XBB.1.5 -env/Austria/CeMM34960/2023,XBB.1.5 USA/MA-CDCBI-CRSP_Z4U4BKUKT6MQGHPD/2023,XBB.1.5 USA/PA-CDC-LC0987078/2023,XBB.1.5 USA/NY-CDC-LC0980447/2023,XBB.1.5 @@ -2247743,7 +2247636,6 @@ Ireland/D-SJH-CS230129/2023,XBB.1.5 Austria/AGES-1110840/2023,XBB.1.5 USA/NY-CDC-QDX47144756/2023,XBB.1.5 USA/NY-NYULH10518/2023,XBB.1.5 -env/Austria/CeMM34872/2023,XBB.1.5 USA/NY-CDC-QDX46827232/2023,XBB.1.5 USA/NY-NYULH10134/2023,XBB.1.5 Canada/ON-PHL-23-07238/2023,XBB.1.5 @@ -2248948,7 +2248840,6 @@ Austria/AGES-1117808/2023,XBB.1.5 USA/NY-CDC-LC0988650/2023,XBB.1.5 USA/NJ-CDC-815389885/2023,XBB.1.5 Canada/ON-KHS-23-01753-v1/2023,XBB.1.5 -env/Austria/CeMM34689/2023,XBB.1.5 USA/TX-CDC-QDX47312096/2023,XBB.1.5 Germany/SN-RKI-I-1107013/2023,XBB.1.5 USA/NY-CDC-LC1010102/2023,XBB.1.5 @@ -2249482,7 +2249373,6 @@ USA/NM-CDC-QDX46500517/2023,XBB.1.5 USA/NY-IVY-G43P91A0/2022,XBB.1.5 USA/VA-VTVAS3-GSC41876/2023,XBB.1.5 USA/NY-CDC-QDX45740209/2023,XBB.1.5 -env/Austria/CeMM34926/2023,XBB.1.5 Canada/ON-PHL-11665/2023,XBB.1.5 USA/VA-CAV_VAS3N_00018213_01/2023,XBB.1.5 USA/MD-CDC-QDX45638679/2023,XBB.1.5 @@ -2249773,7 +2249663,6 @@ USA/NY-PRL-221223_00C06/2022,XBB.1.5 USA/NY-CDC-VSX-A078687/2023,XBB.1.5 USA/NY-CDC-LC0946298/2022,XBB.1.5 USA/AZ-ASPHL-0291/2023,XBB.1.5 -env/Austria/CeMM34930/2023,XBB.1.5 Israel/ICH-741196214/2023,XBB.1.5 USA/NC-CDC-QDX46944429/2023,XBB.1.5 Canada/QC-L00590919001/2023,XBB.1.5 @@ -2255777,7 +2255666,6 @@ USA/TX-CDC-QDX43330423/2022,BQ.1 USA/CA-CDPH-FS47314031/2023,BQ.1 USA/CA-UCSF-JD2876/2022,BQ.1 Canada/AB-ABPHL-91082/2023,BQ.1 -env/Austria/CeMM34382/2022,BQ.1 USA/CA-CDC-STM-B3R2SPJ52/2022,BQ.1 USA/TX-HHD-2209205306/2022,BQ.1 England/PLYM-325B8582/2022,BQ.1 @@ -2258316,7 +2258204,6 @@ USA/CA-HLX-STM-QYJF2BKRA/2022,BQ.1 USA/CA-HLX-STM-3967JR9SM/2022,BQ.1 USA/NJ-CDC-LC0935701/2022,BQ.1 Canada/AB-ABPHL-84146/2022,BQ.1 -env/Austria/CeMM34814/2023,BQ.1 USA/MD-CDC-QDX43330158/2022,BQ.1 Germany/BY-RKI-I-1033904/2022,BQ.1 USA/CA-HLX-STM-ESTJE99R4/2022,BQ.1 @@ -2263414,7 +2263301,6 @@ USA/KS-KHEL-12942/2022,BQ.1 Germany/BW-RKI-I-1000974/2022,BQ.1 Canada/BC-BCCDC-559376/2022,BQ.1 USA/CA-CDC-STM-N6GFRH37B/2023,BQ.1 -env/Austria/CeMM34149/2022,BQ.1 USA/CA-CDC-STM-Y2VWCFPXT/2022,BQ.1 USA/TX-CDC-STM-TAYHBJ7F9/2022,BQ.1 USA/CA-CDC-QDX44484166/2022,BQ.1 @@ -2266553,7 +2266439,6 @@ Japan/PG-386431/2022,BA.2.3.20 USA/CA-CDPH-FS48077322/2022,BA.2.3.20 Japan/PG-416024/2022,BA.2.3.20 Japan/PG-393534/2022,BA.2.3.20 -env/USA/CA-SEARCH-213794/2022,BA.2.3.20 Austria/LB-R00108-S234/2022,BA.2.3.20 Denmark/DCGC-611806/2022,BA.2.3.20 England/PHEC-YY8CPFK/2022,BA.2.3.20 @@ -2266837,7 +2266722,6 @@ Japan/PG-391981/2022,BA.2.3.20 USA/NJ-CDC-QDX43164946/2022,BA.2.3.20 Australia/VIC73962/2022,BA.2.3.20 Japan/TKYmbc25490/2022,BA.2.3.20 -env/USA/CA-SEARCH-213841/2022,BA.2.3.20 Guam/GU-H2217493/2022,BA.2.3.20 USA/CA-CDPH-500078686/2022,BA.2.3.20 Philippines/PGCV_0039_3982/2022,BA.2.3.20 @@ -2268130,7 +2268014,6 @@ Japan/PG-429383/2022,BQ.1.3 Belgium/AZDelta-2251-16627/2023,BQ.1.3 USA/TX-CDC-QDX45277852/2023,BQ.1.3 USA/NE-NPHL22-21214/2022,BQ.1.3 -env/USA/CA-SEARCH-216617/2022,BQ.1.3 USA/NJ-CDC-QDX44738076/2022,BQ.1.3 England/BRBR-3267A248/2022,BQ.1.3 USA/CA-CDC-STM-AFNY29THP/2022,BQ.1.3 @@ -2271684,7 +2271567,6 @@ USA/CO-CDPHE-2103730999/2022,BQ.1.2 Brazil/SP-IB_CEVC_2203972/2022,BQ.1.2 USA/NC-CORVASEQ-1085-8819/2023,BQ.1.2 Scotland/LSPA-325DFBDE/2022,BQ.1.2 -env/USA/CA-SEARCH-214029/2022,BQ.1.2 USA/PA-CDC-STM-YSNPEE3P4/2022,BQ.1.2 Germany/BW-RKI-I-994007/2022,BQ.1.2 USA/VA-CDC-QDX44165727/2022,BQ.1.2 @@ -2284274,7 +2284156,6 @@ India/GA-ICMR-NIV-INSACOG-GSEQ-12396/2022,BA.2.75.5 Germany/HB-RKI-I-1089095/2023,BA.2.75.5 Norway/32004/2022,BA.2.75.5 India/RJ-SMS-ICMR-INSACOG-TS-16958/2022,BA.2.75.5 -env/USA/CA-SEARCH-208861/2022,BA.2.75.5 India/UP-IGIB2260PGI6380/2022,BA.2.75.5 Italy/CAM-TIGEM-IZSM-COLLI-40860/2022,BA.2.75.5 England/PHEC-YY81OXG/2022,BA.2.75.5 @@ -2296635,7 +2296516,6 @@ USA/CA-CDC-QDX43165483/2022,BN.1.3 USA/CA-CDPH-FS25388077/2022,BN.1.3 Germany/SH-RKI-I-1076759/2022,BN.1.3 USA/ID-CDC-2-6612498/2022,BN.1.3 -env/USA/CA-SEARCH-216518/2022,BN.1.3 USA/NY-PRL-221216_00L01/2022,BN.1.3 Germany/BW-RKI-I-1117080/2023,BN.1.3 Singapore/R3MR139/2023,BN.1.3 @@ -2297739,7 +2297619,6 @@ Sweden/SUS0018270/2022,BN.1.3 USA/CA-CDPH-FS27890123/2023,BN.1.3 Japan/TKYkbm80140/2022,BN.1.3 Germany/BW-RKI-I-998365/2022,BN.1.3 -env/USA/CA-SEARCH-216551/2022,BN.1.3 Japan/PG-422583/2022,BN.1.3 Japan/TKYkbm75512/2022,BN.1.3 Japan/TKYmbc23568/2022,BN.1.3 @@ -2309532,7 +2309411,6 @@ Australia/QLD0x012A79/2022,XBB.1 England/QEUH-325D8FBB/2022,XBB.1 Slovenia/245187/2022,XBB.1 Finland/THL-20840/2022,XBB.1 -env/USA/CA-SEARCH-208921/2022,XBB.1 Germany/NW-RKI-I-1115283/2023,XBB.1 Indonesia/JT-Undip-00362/2022,XBB.1 Germany/BW-RKI-I-1096130/2023,XBB.1 @@ -2309612,7 +2309490,6 @@ Germany/RP-RKI-I-1111865/2023,XBB.1 USA/CA-CDC-STM-T2CTZSXG5/2022,XBB.1 India/GJ-GBRC9719/2022,XBB.1 USA/MD-IGS-012304604120A/2023,XBB.1 -env/Austria/CeMM34869/2023,XBB.1 England/BRBR-326D9CA3/2023,XBB.1 Finland/THL-202220047/2022,XBB.1 USA/CA-CDC-STM-YJRUJHREU/2022,XBB.1 @@ -2310873,7 +2310750,6 @@ USA/HI-H2319043/2022,XBB.1 England/LSPA-3260BEB1/2022,XBB.1 USA/NY-PRL-221221_01H13/2022,XBB.1 Iceland/L-1789/2022,XBB.1 -env/Italy/PIE-ARPA-23BL00059AL/2023,XBB.1 Australia/QLD0x012377/2022,XBB.1 Malaysia/IMR_CV05340/2022,XBB.1 Mayotte/YT-HMN-22122010587/2022,XBB.1 @@ -2312624,7 +2312500,6 @@ Sweden/180952/2022,XBB.1 Denmark/DCGC-633750/2022,XBB.1 Japan/TKYhug14673/2022,XBB.1 Switzerland/JU-Risch-1114R14646/2022,XBB.1 -env/Austria/CeMM34906/2023,XBB.1 Guatemala/10405-LNS/2022,XBB.1 Austria/AGES-1143030/2022,XBB.1 Brunei/7123014302/2023,XBB.1 @@ -2321071,7 +2320946,6 @@ France/ARA-HMN-22112290396/2022,BF.7 Greece/HERA_PHLnetwork-46585/2022,BF.7 Belgium/Jessa_11-2235-000724ZOL/2022,BF.7 USA/RI-RISHL-E05880/2022,BF.7 -env/USA/CA-SEARCH-213969/2022,BF.7 Austria/LB-R00107-S293/2022,BF.7 Japan/PG-448129/2023,BF.7 Canada/BC-BCCDC-546160/2022,BF.7 @@ -2324779,7 +2324653,6 @@ USA/CT-DPH-1109809001/2022,BF.7 France/OCC-CHU-TLS-6003464635/2022,BF.7 Italy/EMR_AUSLRomagna_C112-22-10/2022,BF.7 England/QEUH-3F87EC3/2022,BF.7 -env/Austria/CeMM34204/2022,BF.7 USA/FL-CDC-QDX41426812/2022,BF.7 England/LSPA-3259B1FA/2022,BF.7 England/QEUH-3266C513/2022,BF.7 @@ -2327466,7 +2327339,6 @@ USA/NC-ECU-CORVASEQ-116006118/2022,BF.7 USA/CA-SEARCH-131366/2022,BF.7 Sweden/PEP386172/2022,BF.7 France/OCC-GENBIO-J02GN2690061/2022,BF.7 -env/USA/CA-SEARCH-213880/2022,BF.7 USA/UT-UPHL-221110485129/2022,BF.7 Ireland/LK-NVRL-ecS22IRL00444498/2022,BF.7 Japan/PG-446387/2023,BF.7 @@ -2330326,7 +2330198,6 @@ USA/TX-HHD-2212206882/2022,XBF USA/KS-KHEL-12952/2022,XBF Australia/VIC76944/2022,XBF Australia/QLD0x012DBB/2023,XBF -env/Austria/CeMM34807/2023,XBF Australia/TAS004299/2022,XBF Australia/QLD0x012F3E/2023,XBF Australia/VIC80580/2023,XBF @@ -2349382,7 +2349253,6 @@ Slovenia/5597/2023,XBB.1.5.38 Germany/BW-RKI-I-1112896/2023,XBB.1.5.38 Slovenia/8308/2023,XBB.1.5.38 Croatia/HZJZ_3101/2023,XBB.1.5.38 -env/Austria/CeMM-34940/2023,XBB.1.5.38 Austria/AGES-1116353/2023,XBB.1.5.38 Croatia/HZJZ_3106/2023,XBB.1.5.38 Austria/LB-R00128-S078/2023,XBB.1.5.38 @@ -2393882,7 +2393752,6 @@ USA/PR-CDC-2-6543385/2022,BQ.1.3.1 USA/CA-HLX-STM-U9ZK5KYPG/2022,BQ.1.3.1 USA/CA-CDPH-500081789/2022,BQ.1.3.1 USA/CA-HLX-STM-DJ5WUZWAQ/2022,BQ.1.3.1 -env/USA/CA-SEARCH-216517/2022,BQ.1.3.1 USA/CA-HLX-STM-CHA4JNMXX/2022,BQ.1.3.1 USA/CA-HLX-STM-3TH47RJR8/2022,BQ.1.3.1 USA/CA-CDC-STM-8A6YGZESJ/2023,BQ.1.3.1 @@ -2397948,7 +2397817,6 @@ USA/UT-UPHL-221219971448/2022,BQ.1.3.2 USA/UT-UPHL-230106663888/2022,BQ.1.3.2 USA/UT-UPHL--23020683173/2023,BQ.1.3.2 USA/UT-UPHL-221223376247/2022,BQ.1.3.2 -env/USA/CA-SEARCH-216640/2022,BQ.1.3.2 USA/PA-CDC-STM-3GF3Y2X39/2022,BQ.1.3.2 USA/NV-CDC-QDX43292643/2022,BQ.1.3.2 USA/VA-VTVAS3-GSC41263/2022,BQ.1.3.2 @@ -2397963,8 +2397831,6 @@ Canada/NS-NSH-571013/2022,BQ.1.3.2 USA/CA-HLX-STM-XCQRBVYGG/2022,BQ.1.3.2 Canada/AB-ABPHL-86077/2022,BQ.1.3.2 Canada/AB-ABPHL-92268/2023,BQ.1.3.2 -env/USA/CA-SEARCH-216696/2022,BQ.1.3.2 -env/USA/CA-SEARCH-216543/2022,BQ.1.3.2 USA/VA-VTVAS3-GSC42136/2023,BQ.1.3.2 USA/VA-CAV_VAS3N_00018037_01/2023,BQ.1.3.2 USA/CA-CDC-STM-29HCCXZ4A/2022,BQ.1.3.2 @@ -2416529,7 +2416395,6 @@ Austria/LB-R00116-S309/2022,XBB.2.11 Austria/MUIV-1258/2023,XBB.2.11 Belgium/ZNA_26188446/2023,XBB.2.11 Austria/AGES-1108584/2023,XBB.2.11 -env/Austria/CeMM34627/2023,XBB.2.11 Austria/AGES-1112489/2023,XBB.2.11 Austria/AGES-1112269/2023,XBB.2.11 Austria/LB-R00126-S034/2023,XBB.2.11 @@ -2447524,7 +2447389,6 @@ England/PHEC-YYEZPUI/2023,XBB.1.5.99 England/QEUH-326F2C86/2023,XBB.1.5.99 Austria/LB-R00128-S275/2023,XBB.1.5.99 Croatia/HZJZ_3569/2023,XBB.1.5.99 -env/Austria/CeMM34840/2023,XBB.1.5.99 Austria/AGES-1126951/2023,XBB.1.5.99 Austria/AGES-1132070/2023,XBB.1.5.99 Austria/AGES-1126948/2023,XBB.1.5.99 @@ -2452916,7 +2452780,6 @@ Netherlands/GE-RIVM-130581/2023,GE.1.3 Netherlands/FR-RIVM-130440/2023,GE.1.3 Netherlands/OV-RIVM-130486/2023,GE.1.3 Netherlands/UT-RIVM-130443/2023,GE.1.3 -env/Germany/BY-LGL-5957862/2023,GE.1.3 USA/TX-HMH-M-130191/2023,GE.1.3 Scotland/CLIMB-CM7YE3F6/2023,GE.1.3 Scotland/CLIMB-CM7YJPOX/2023,GE.1.3 @@ -2462201,7 +2462064,6 @@ England/BRBR-3271A267/2023,FL.35 SouthAfrica/NICD-N54011/2023,FL.35 SouthAfrica/NICD-N54160/2023,FL.35 England/PHEC-YYE5I18/2023,FL.35 -env/Ukraine/79708/2023,FL.35 Ukraine/79087/2023,FL.35 USA/CA-CDPH-A3000000297943/2023,FL.35 SouthAfrica/NICD-N55627/2023,FL.35 @@ -2467424,7 +2467286,6 @@ USA/CA-GBW-H20-330-3936/2023,GK.7 England/CLIMB-CM7YKQMS/2023,GK.7 USA/VA-VTVAS3-GSC43731/2023,GK.7 Canada/ON-PHL-23-30240/2023,GK.7 -env/Germany/BY-LGL-5990090/2023,GK.7 Brazil/SP-IAL-357277524/2023,GK.7 England/CLIMB-CM7YFIJK/2023,GK.7 England/CLIMB-CM7YGKZH/2023,GK.7 @@ -2471764,7 +2471625,6 @@ France/PAC-HCL-723000889701/2023,HH.7 USA/CA-HLX-STM-TPWDKZ38B/2023,HH.7 France/BRE-CHUP-8603718111/2023,HH.7 France/OCC-ChuNim-2305231094/2023,HH.7 -env/Ukraine/80162/2023,HH.7 Spain/PV-HUD-96092997/2023,HH.7 Italy/FVG-TS-65345796/2023,HH.7 Italy/FVG-TS-39422918/2023,HH.7 @@ -2471785,8 +2471645,6 @@ Italy/LOM-69468860/2023,HH.7 USA/CA-LACPHL-AY00671/2023,HH.7 Ukraine/80257/2023,HH.7 Ukraine/80113/2023,HH.7 -env/Ukraine/80144/2023,HH.7 -env/Ukraine/80165/2023,HH.7 England/CLIMB-CM7YKPY8/2023,HH.7 USA/SC-COVID23-0257/2023,HH.7 USA/CA-HLX-STM-QQHSMXNW4/2023,HH.7 @@ -2481890,7 +2481748,6 @@ Sweden/D-6556151276/2023,FL.1.5.2 Italy/VEN-IZSVe-23RS8181-9_PD/2023,FL.1.5.2 England/CLIMB-CM7YGO6D/2023,FL.1.5.2 Norway/Ahus-5267/2023,FL.1.5.2 -env/Ukraine/81031/2023,FL.1.5.2 England/CLIMB-CM7Y8F6C/2023,FL.1.5.2 Australia/WA15262/2023,FL.1.5.2 Australia/NSW-ICPMR-49531/2023,FL.1.5.2 @@ -2487370,7 +2487227,6 @@ SouthKorea/KDCA267547/2023,EG.5.1.12 SouthKorea/KDCA263851/2023,EG.5.1.12 SouthKorea/KDCA267123/2023,EG.5.1.12 SouthKorea/KDCA267078/2023,EG.5.1.12 -env/Germany/BY-LGL-6002566/2023,EG.5.1.12 Denmark/DCGC-662278/2023,EG.5.1.12 Germany/BY-MVP-000021208/2023,EG.5.1.12 SouthKorea/KDCA266237/2023,EG.5.1.12 @@ -2490675,7 +2490531,6 @@ USA/NC-1085-9700/2023,EG.5.1.15 USA/CO-CDPHE-40940656/2023,EG.5.1.15 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