diff --git a/lineage_notes.txt b/lineage_notes.txt index 38ff285b..8fb8b22b 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2662,6 +2662,7 @@ XBB.1.4.1 Mainly Denmark, Norway and Sweden, defined by S:S673G, from pango-desi XBB.1.4.2 S:486P, ORf1a:V3595F, Brazil XBB.1.5 USA, S:F486P XBB.1.5.1 USA, S:T573I +HJ.1 Alias of XBB.1.5.1.1, S:E324K, C4543T, USA XBB.1.5.2 USA, S:T284I, S:K147I XBB.1.5.3 USA, S:A411S XBB.1.5.4 USA, S:T883I directly on XBB.1.5 polytomy @@ -2689,6 +2690,7 @@ FD.2 Alias of XBB.1.5.15.2, S:Q146K, ORF1a:G519S, USA, from #1600 FD.2.1 Alias of XBB.1.5.15.2.1, ORF1a:D3022N, Peru FD.3 Alias of XBB.1.5.15.3, S:A348S, T8503C, USA/Finland/Japan FD.4 Alias of XBB.1.5.15.4, ORF1a:L4191F, USA +FD.4.1 Alias of XBB.1.5.15.4.1, ORF1a:T4355I, ORF1b:I2634F XBB.1.5.16 T14766C, USA FG.1 Alias of XBB.1.5.16.1, S:T284I, S:R403K, S:L513F, USA, from #1751 FG.2 Alias of XBB.1.5.16.2, S:D178N, USA/Europe @@ -2800,6 +2802,8 @@ XBB.1.5.92 ORF1a:T1168I, Ecuador XBB.1.5.93 C337T, C19186T, USA HD.1 Alias of XBB.1.5.93.1, S:T346I, USA/Dominican Republic from sars-cov-2-variants/lineage-proposals#363 XBB.1.5.94 S:Q613H, T25461C, France +XBB.1.5.95 ORF1:A1851V +XBB.1.5.96 C28603T XBB.1.6 USA, S:L216F, S:H146K, from issue #1428 XBB.1.7 USA-NY, S:V608I XBB.1.8 Denmark, S:186insSGG, C3241T @@ -2862,10 +2866,12 @@ FL.20 Alias of XBB.1.9.1.20, S:F456L (22928C), S:Q52H, Spain, from #2072 FL.21 Alias of XBB.1.9.1.21, A10564T, South Korea/China FL.22 Alias of XBB.1.9.1.22, ORF1b:I1416V, T24184C FL.23 Alias of XBB.1.9.1.23, ORF1b:V1132I, Philippines +FL.23.1 Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C8016, C8311T FL.24 Alias of XBB.1.9.1.24, S:Q613H, S:A688V, from sars-cov-2-variants/lineage-proposals#284 FL.25 Alias of XBB.1.9.1.25, S:E554K, USA/England, from #2040 FL.26 Alias of XBB.1.9.1.26, C22264T FL.26.1 Alias of XBB.1.9.1.26.1, S:493L, Sweden +FL.27 Alias of XBB.1.9.1.27, ORF1a:V3747I XBB.1.9.2 S:F486P (after 27507C, 16878T), Indonesia/Singapore，from #1602 EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and https://github.com/jmcbroome/auto-pango-designation/pull/193 EG.1.1 Alias of XBB.1.9.2.1.1, S:V70F and ORF1a:T403I, Luxembourg/Belgium/France @@ -2879,6 +2885,9 @@ EG.2 Alias of XBB.1.9.2.2, S:478R, Indonesia EG.2.1 Alias of XBB.1.9.2.2.1, S:F456L (T22930A), S:V327I, Indonesia EG.3 Alias of XBB.1.9.2.3, ORF1a:L2778F on N:L219F branch EG.4 Alias of XBB.1.9.2.4, C28651T +EG.4.1 Alias of XBB.1.9.2.4.1, S:I870V, N:A119S +EG.4.2 Alias of XBB.1.9.2.4.2, S:A623V, T14652C, China +EG.4.3 Alias of XBB.1.9.2.4.3, S:Q613H EG.5 Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indonesia EG.5.1 Alias of XBB.1.9.2.5.1, S:Q52H EG.5.1.1 Alias of XBB.1.9.2.5.1.1, China, from pango-designation issue #2020 @@ -2917,12 +2926,17 @@ FU.1 Alias of XBB.1.16.1.1, T3802C FU.2 Alias of XBB.1.16.1.2, C8692T FU.2.1 Alias of XBB.1.16.1.2.1, S:E619Q, Vietnam FU.3 Alias of XBB.1.16.1.3, C11665T, India-RJ +FU.3.1 Alias of XBB.1.16.1.3.1, S:G184S FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C from #1832 XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India GY.1 Alias of XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066 GY.2 Alias of XBB.1.16.2.2, S:T883I GY.2.1 Alias of XBB.1.16.2.2.1, S:S255F, South Korea GY.3 Alias of XBB.1.16.2.3, S:M177I, Thailand +GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos +GY.5 Alias of XBB.1.16.2.5, G9190C +GY.6 Alias of XBB.1.16.2.6, ORF1a:V1765I +GY.7 Alias of XBB.1.16.2.7, ORF1a:G3617C, G5515T, Thailand/Laos XBB.1.16.3 Defined by A2893C, India XBB.1.16.4 Defined by S:T678I, India, from #1903 XBB.1.16.5 Defined by T9991C,C16332T, India, from #1983 @@ -2955,9 +2969,11 @@ FE.1.1.3 Alias of XBB.1.18.1.1.1.3, A24775G, China FE.1.1.4 Alias of XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil FE.1.2 Alias of XBB.1.18.1.1.2, A5488G XBB.1.19 Defined by S:486P, C541T, A10042G, T21363C, pre ORF8:8*, Pakistan, from #1680 -XBB.1.19.1 Defined by S:E554K，from #1765 +XBB.1.19.1 Defined by S:E554K，Pakistan, from #1765 GW.1 Alias of XBB.1.19.1.1, ORF1a:D264N, N:M322V, China, from sars-cov-2-variants/lineage-proposals#157 GW.2 Alias of XBB.1.19.1.2, S:D936G, USA +GW.3 Alias of XBB.1.19.1.3, ORF1a:S100N, ORF1a:N3537S +GW.4 Alias of XBB.1.19.1.4, ORF1a:M3280I XBB.1.20 Defined by C541T, ORF3a:A72V, ORF1a:P4312T, pre ORF8:8*, Malaysia XBB.1.21 Defined by S:486A, ORF1a:K1247R, Turkey, from #1646 XBB.1.22 Defined by S:486P, on 28297C branch, from #1704 @@ -2990,6 +3006,7 @@ XBB.1.29 Defined by ORF1a:L3829F, S:A292S, Europe XBB.1.30 Defined by ORF1b:K2557R, South East Asia XBB.1.31 Defined by S:453F and S:478R, Indonesia/Singapore XBB.1.31.1 S:E554K, Indonesia +XBB.1.31.2 ORF1a:A1049V, Indonesia XBB.1.32 Defined by ORF1a:E148D, Philippines XBB.1.32.1 S:Y453F, ORF1a:L642F, ORF1b:L2497I, Philippines/Thailand, from #1908 XBB.1.33 Defined by S:A376T, found mainly in Italy, from pango-designation issue #1879 diff --git a/lineages.csv b/lineages.csv index a243c4ae..127e5267 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2140374,13 +2140374,6 @@ Ireland/TA-Enfer-110123004_C10/2023,XBB.1.5.1 Ireland/TA-Enfer-020123002_E6/2023,XBB.1.5.1 USA/MD-CDC-LC0990128/2023,XBB.1.5.1 USA/NY-PRL-221221_00L17/2022,XBB.1.5.1 -USA/NJ-PHEL-V22053534/2022,XBB.1.5.1 -USA/NJ-CDC-LC0954292/2022,XBB.1.5.1 -USA/NJ-CDC-LC0979264/2023,XBB.1.5.1 -USA/IN-CDC-STM-STNG262FT/2023,XBB.1.5.1 -USA/TX-HMH-MCoV-122638/2023,XBB.1.5.1 -USA/RI-CDC-LC0990582/2023,XBB.1.5.1 -USA/RI-CDC-LC0986493/2023,XBB.1.5.1 USA/NY-Wadsworth-23000042-01/2022,XBB.1.5.1 USA/NJ-CDC-LC0988483/2023,XBB.1.5.1 USA/NJ-CDC-LC0988308/2023,XBB.1.5.1 @@ -2141931,9 +2141924,6 @@ Denmark/DCGC-638946/2023,XBB.1.9.1 Denmark/DCGC-639170/2023,XBB.1.9.1 England/LSPA-326823A4/2023,XBB.1.9.1 England/LSPA-32681F29/2023,XBB.1.9.1 -England/QEUH-326A6F00/2023,XBB.1.9.1 -England/QEUH-326A4263/2023,XBB.1.9.1 -USA/CA-GBW-H20-279-8129/2023,XBB.1.9.1 Pakistan/NIH-B117-S1/2023,XBB.1.9.1 Pakistan/NIH-B117-S3/2023,XBB.1.9.1 Pakistan/NIH-B117-S4/2023,XBB.1.9.1 @@ -2231904,11 +2231894,6 @@ USA/CA-CDC-QDX47214849/2023,XBU Taiwan/CDC-F78577/2023,XBU Pakistan/NIH-B122-S2/2023,XBB.1.19 Italy/LAZ-IFO-2302080129/2023,XBB.1.19 -PAK/1025-S2/2023,XBB.1.19 -Pakistan/IDRL-AKU-KHI-1025-S2/2023,XBB.1.19 -Spain/AS-232315779/2023,XBB.1.19 -England/DHSC-CYRR3M3/2023,XBB.1.19 -England/DHSC-CYRIW1C/2023,XBB.1.19 Pakistan/NIH-B121-S7/2023,XBB.1.19 Pakistan/NIH-B122-S16/2023,XBB.1.19 England/PHEC-YY8AWP4/2022,XBB.1.19 @@ -2231961,10 +2231946,6 @@ Australia/VIC81576/2023,XBB.1.19.1 Australia/NSW-ICPMR-43498/2023,XBB.1.19.1 England/PHEC-YYEK3XP/2023,XBB.1.19.1 Australia/NSW-ICPMR-43308/2023,XBB.1.19.1 -Pakistan/NIH-B122-S13/2023,XBB.1.19.1 -Pakistan/NIH-B121-S3/2023,XBB.1.19.1 -France/IDF-IPP05133/2023,XBB.1.19.1 -USA/NJ-CDC-VSX-A064133/2023,XBB.1.19.1 PAK/603-S20/2023,XBB.1.19.1 PAK/1215-S1/2023,XBB.1.19.1 Spain/CT-HUB07859/2023,XBB.1.19.1 @@ -2244272,7 +2244253,6 @@ USA/NY-ASC-210996374/2023,XBB.1.5 USA/LA-CDC-QDX47312134/2023,XBB.1.5 USA/NY-PRL-221207_02J19/2022,XBB.1.5 USA/PA-CDC-QDX46447737/2023,XBB.1.5 -USA/NY-CDC-QDX46275988/2023,XBB.1.5 USA/NC-UNC-9251/2023,XBB.1.5 USA/MA-CDCBI-CRSP_6VK3DMFNSDMGRGWM/2023,XBB.1.5 USA/MD-IGS-142305000336A/2023,XBB.1.5 @@ -2244367,7 +2244347,6 @@ USA/NY-PRL-230213_81H11/2023,XBB.1.5 USA/VA-CDC-QDX45789487/2023,XBB.1.5 England/PHEC-YYEBYWP/2023,XBB.1.5 USA/TX-HMH-M-124829/2023,XBB.1.5 -USA/NY-CDC-QDX47260151/2023,XBB.1.5 USA/NY-NYCPHL-016278/2022,XBB.1.5 USA/MA-CDCBI-CRSP_X5TNS6VXLRP2X5LP/2023,XBB.1.5 USA/TX-HMH-M-126595/2023,XBB.1.5 @@ -2244391,7 +2244370,6 @@ Canada/ON-KHS-23-02577-v1/2023,XBB.1.5 USA/MI-MDHHS-SC44009/2023,XBB.1.5 USA/NY-CDC-LC0997294/2023,XBB.1.5 USA/CA-CDPH-FS27888346/2022,XBB.1.5 -USA/WI-UW-14912/2023,XBB.1.5 England/QEUH-326E73BC/2023,XBB.1.5 USA/NY-CDC-QDX46179139/2023,XBB.1.5 Canada/QC-L00586885001/2023,XBB.1.5 @@ -2244855,15 +2244833,12 @@ USA/VA-CDC-QDX46447325/2023,XBB.1.5 England/QEUH-326F012F/2023,XBB.1.5 Netherlands/FR-RIVM-124391/2023,XBB.1.5 USA/OH-CDC-QDX46060498/2023,XBB.1.5 -Canada/ON-PHL-23-09104/2023,XBB.1.5 USA/VA-CAV_VAS3N_00017927_01/2023,XBB.1.5 USA/PA-CDC-STM-GQXHBS274/2023,XBB.1.5 USA/CA-CDC-QDX47042763/2023,XBB.1.5 USA/NJ-PHEL-V23001183/2023,XBB.1.5 USA/TX-CDC-QDX47312006/2023,XBB.1.5 -Canada/ON-PHL-10455-v2/2023,XBB.1.5 USA/NJ-CDC-LC0987016/2023,XBB.1.5 -USA/TX-CDC-QDX47043152/2023,XBB.1.5 Netherlands/FL-RIVM-126863/2023,XBB.1.5 Austria/LB-R00128-S103/2023,XBB.1.5 Canada/AB-ABPHL-91837/2023,XBB.1.5 @@ -2244913,7 +2244888,6 @@ USA/NY-CDC-LC0954323/2022,XBB.1.5 USA/PA-CDC-QDX46826445/2023,XBB.1.5 England/QEUH-326F03A1/2023,XBB.1.5 USA/NJ-CDC-QDX45961051/2023,XBB.1.5 -USA/PA-CDC-STM-78RX7XTRJ/2023,XBB.1.5 USA/MD-CDC-QDX46135738/2023,XBB.1.5 USA/TX-CDC-STM-MYJ55MPF3/2023,XBB.1.5 Germany/SN-RKI-I-1098534/2023,XBB.1.5 @@ -2245051,7 +2245025,6 @@ USA/GA-CDC-QDX47214253/2023,XBB.1.5 USA/IL-SHIELD-3032023178/2023,XBB.1.5 England/BRBR-326F40A6/2023,XBB.1.5 USA/MA-CDCBI-CRSP_Q42IRWACGNU3AJBK/2023,XBB.1.5 -USA/OH-PLMI-HCCNT-16836/2023,XBB.1.5 USA/NV-CDC-QDX46725346/2023,XBB.1.5 Sweden/SUS0020022/2023,XBB.1.5 USA/CA-HLX-STM-8PTBEM52X/2022,XBB.1.5 @@ -2245261,7 +2245234,6 @@ USA/UT-UPHL--23021451739/2023,XBB.1.5 USA/CA-CDC-STM-JNQBYX95E/2022,XBB.1.5 USA/CA-CDC-STM-DZ65SY5KF/2023,XBB.1.5 Austria/LB-R00126-S146/2023,XBB.1.5 -Canada/ON-PHL-23-09629/2023,XBB.1.5 England/PHEC-YY89UND/2023,XBB.1.5 USA/RI-ASC-210997108/2023,XBB.1.5 USA/FL-CDC-QDX46552343/2023,XBB.1.5 @@ -2245657,7 +2245629,6 @@ USA/NJ-CDC-QDX47145009/2023,XBB.1.5 Denmark/DCGC-641223/2023,XBB.1.5 USA/NY-CDC-LC0957311/2022,XBB.1.5 USA/MD-CDC-LC0996208/2023,XBB.1.5 -Germany/BB-RKI-I-1111122/2023,XBB.1.5 USA/MN-MDH-34336/2023,XBB.1.5 Luxembourg/LNS4085448/2023,XBB.1.5 USA/CA-CDPH-FS48081325/2022,XBB.1.5 @@ -2245876,7 +2245847,6 @@ USA/NY-CDC-QDX45740097/2023,XBB.1.5 USA/MD-CDC-QDX47260356/2023,XBB.1.5 USA/CA-HLX-STM-N7NKKD5QZ/2022,XBB.1.5 USA/NJ-CDC-VSX-A073058/2023,XBB.1.5 -Austria/AGES-1119426/2023,XBB.1.5 USA/TX-CDC-QDX45433974/2023,XBB.1.5 USA/MI-UM-L362557906/2023,XBB.1.5 USA/NY-CDC-LC0979136/2023,XBB.1.5 @@ -2245904,7 +2245874,6 @@ Canada/ON-PHL-15229/2023,XBB.1.5 Canada/QC-L00573961001/2023,XBB.1.5 USA/VA-CDC-QDX46775493/2023,XBB.1.5 USA/VA-VTVAS3-GSC41624/2023,XBB.1.5 -USA/NY-NYULH10068/2023,XBB.1.5 England/BRBR-326D481D/2023,XBB.1.5 USA/TX-HMH-MCoV-125746/2023,XBB.1.5 USA/NC-ECU-CORVASEQ-116722622/2023,XBB.1.5 @@ -2245986,7 +2245955,6 @@ USA/CO-CDPHE-2103783202/2023,XBB.1.5 Australia/WA11588/2023,XBB.1.5 Canada/AB-ABPHL-92642/2023,XBB.1.5 Canada/NS-NSHA-599759/2023,XBB.1.5 -USA/NY-CDC-QDX46447349/2023,XBB.1.5 USA/NY-CDC-LC0991242/2023,XBB.1.5 USA/GA-CDC-QDX46944372/2023,XBB.1.5 USA/NY-CDC-QDX45961518/2023,XBB.1.5 @@ -2246136,7 +2246104,6 @@ USA/CA-LACPHL-AF19440/2023,XBB.1.5 USA/CO-CDC-QDX46945248/2023,XBB.1.5 USA/MD-CDC-LC1006962/2023,XBB.1.5 Australia/NSW-ICPMR-42788/2023,XBB.1.5 -USA/TX-CDC-QDX46327300/2023,XBB.1.5 USA/MA-IVY-G43Q08J4/2023,XBB.1.5 USA/NC-CORVASEQ-1085-8912/2023,XBB.1.5 USA/NY-CDC-QDX46276214/2023,XBB.1.5 @@ -2246206,7 +2246173,6 @@ USA/PA-CDC-LC0997210/2023,XBB.1.5 Poland/605/2023,XBB.1.5 Scotland/SCOT-25624/2023,XBB.1.5 USA/MA-CDCBI-CRSP_BYXTHYGRANCL6FQZ/2023,XBB.1.5 -Canada/AB-ABPHL-91601/2023,XBB.1.5 USA/NJ-CDC-LC0991241/2023,XBB.1.5 USA/CA-Stanford-130_S38/2023,XBB.1.5 USA/CA-CDC-QDX46229570/2023,XBB.1.5 @@ -2246281,7 +2246247,6 @@ Germany/NW-RKI-I-1112823/2023,XBB.1.5 USA/NC-UNC-9273/2023,XBB.1.5 USA/MA-CDC-LC1002459/2023,XBB.1.5 Spain/GA-CHUVI-22068740/2023,XBB.1.5 -USA/LA-EVTL18516/2023,XBB.1.5 Denmark/DCGC-640738/2023,XBB.1.5 Poland/0240WSN2023_wsseol/2023,XBB.1.5 USA/FL-CDC-LC0984530/2023,XBB.1.5 @@ -2246371,7 +2246336,6 @@ USA/DE-CDC-VSX-A078875/2023,XBB.1.5 England/PHEC-YYEDJ1R/2023,XBB.1.5 Canada/QC-L00588753001/2023,XBB.1.5 USA/VA-VTVAS3-GSC42184/2023,XBB.1.5 -USA/NJ-CDC-STM-XWQNSD4F3/2023,XBB.1.5 Pakistan/IDRL-AKU-KHI-1297-S5/2023,XBB.1.5 USA/CA-CDC-VSX-A061820/2023,XBB.1.5 USA/NY-CDC-QDX46500131/2023,XBB.1.5 @@ -2246716,7 +2246680,6 @@ USA/TX-CDC-QDX46500544/2023,XBB.1.5 USA/RI-CDC-2-6859662/2023,XBB.1.5 USA/CA-CDC-LC0998777/2023,XBB.1.5 USA/CA-CDC-QDX46725225/2023,XBB.1.5 -England/BRBR-326C001C/2023,XBB.1.5 USA/CA-CDC-QDX46725088/2023,XBB.1.5 USA/CA-CDC-STM-GA9Z4G9YE/2023,XBB.1.5 Canada/ON-PHL-13848/2023,XBB.1.5 @@ -2246797,7 +2246760,6 @@ Canada/QC-L00591528001/2023,XBB.1.5 USA/TX-CDC-QDX46229893/2023,XBB.1.5 USA/VA-CDC-LC1002935/2023,XBB.1.5 USA/FL-CDC-QDX47272353/2023,XBB.1.5 -Chile/VS-140707/2022,XBB.1.5 Canada/ON-PHL-23-15568/2023,XBB.1.5 USA/TX-CDC-QDX46010814/2023,XBB.1.5 USA/NJ-PHEL-V23006433/2023,XBB.1.5 @@ -2246840,7 +2246802,6 @@ USA/UT-UPHL-230106772386/2022,XBB.1.5 USA/VA-VTVAS3-GSC41950/2023,XBB.1.5 USA/IL-IDPH-S23WGS0540/2023,XBB.1.5 Canada/QC-L00589013001/2023,XBB.1.5 -Canada/QC-L00585967001/2023,XBB.1.5 Sweden/PEP562163/2023,XBB.1.5 USA/TX-HMH-MCoV-122488/2023,XBB.1.5 Sweden/01119602/2023,XBB.1.5 @@ -2247078,7 +2247039,6 @@ USA/NJ-CDC-QDX47260367/2023,XBB.1.5 USA/VI-CDC-2-6832000/2023,XBB.1.5 USA/CA-CDC-QDX46500643/2023,XBB.1.5 Canada/ON-PHL-12538/2023,XBB.1.5 -Mexico/YUC_IBT_IMSS_10580/2023,XBB.1.5 Canada/ON-PHL-23-00747/2022,XBB.1.5 USA/NJ-CDC-QDX45638944/2023,XBB.1.5 USA/NJ-CDC-LC0979688/2022,XBB.1.5 @@ -2247097,7 +2247057,6 @@ England/BRBR-326E94E4/2023,XBB.1.5 Canada/QC-LSPQ-L00584166001/2023,XBB.1.5 England/BRBR-326DB88F/2023,XBB.1.5 Austria/AGES-1106712/2023,XBB.1.5 -Scotland/SCOT-26477/2023,XBB.1.5 USA/MA-CDCBI-CRSP_UMLFQ6DKXXYIZNZW/2023,XBB.1.5 Spain/CT-HUGTiP-C1R127/2023,XBB.1.5 Israel/ICH-741196182/2023,XBB.1.5 @@ -2247340,7 +2247299,6 @@ England/PHEC-YYEDPZS/2023,XBB.1.5 USA/CT-Yale-24046/2023,XBB.1.5 USA/CT-DPH-1130784001/2023,XBB.1.5 USA/NC-1085-9178/2023,XBB.1.5 -USA/CA-SCPHL-00393/2023,XBB.1.5 England/BRBR-3267AD74/2022,XBB.1.5 USA/FL-CDC-VSX-A062707/2023,XBB.1.5 USA/GA-CDC-STM-T7D2UBK4Q/2023,XBB.1.5 @@ -2247724,7 +2247682,6 @@ Luxembourg/LNS2976473/2023,XBB.1.5 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USA/VA-CDC-QDX46677352/2023,XBB.1.5 @@ -2248086,7 +2248040,6 @@ Switzerland/VD-CHUV-GEN16119/2023,XBB.1.5 USA/CT-CDC-QDX45909278/2023,XBB.1.5 USA/PA-CDC-LC0991963/2023,XBB.1.5 USA/PA-CDC-QDX45961696/2023,XBB.1.5 -England/BRBR-326D286A/2023,XBB.1.5 USA/NY-CDC-QDX46826504/2023,XBB.1.5 USA/NJ-CDC-QDX46992250/2023,XBB.1.5 Luxembourg/LNS7427686/2023,XBB.1.5 @@ -2248139,7 +2248092,6 @@ England/BRBR-326D426A/2023,XBB.1.5 USA/AZ-CDC-LC0998688/2023,XBB.1.5 Germany/NW-RKI-I-1077099/2022,XBB.1.5 USA/OH-PLMI-17253/2023,XBB.1.5 -Scotland/SCOT-26491/2023,XBB.1.5 Austria/LB-R00126-S015/2023,XBB.1.5 Australia/NSW-ICPMR-43206/2023,XBB.1.5 England/BRBR-326B0729/2023,XBB.1.5 @@ -2248289,7 +2248241,6 @@ USA/HI-H2320136/2023,XBB.1.5 USA/CT-YNH-2538/2023,XBB.1.5 Canada/ON-PHL-23-04039/2023,XBB.1.5 Canada/QC-L00588962001/2023,XBB.1.5 -USA/CO-CDPHE-2103772252/2023,XBB.1.5 Switzerland/VS-ICH-2230137020/2023,XBB.1.5 Ireland/LS-NVRL-SIRL00008995/2023,XBB.1.5 Israel/ICH-741196479/2023,XBB.1.5 @@ -2248470,7 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England/PHEC-YYEBA3M/2023,XBB.1.5 USA/CT-YPL-908/2023,XBB.1.5 @@ -2250444,7 +2250376,6 @@ Israel/CVL-9008975/2023,XBB.1.5 USA/CA-HLX-STM-ZBZ74TX7U/2023,XBB.1.5 England/LSPA-3267093E/2022,XBB.1.5 USA/WI-UW-14903/2023,XBB.1.5 -USA/MN-CDC-VSX-A079138/2023,XBB.1.5 USA/NY-PRL-07_81D11/2023,XBB.1.5 England/PHEC-YYEYO1D/2023,XBB.1.5 USA/FL-CDC-QDX45909079/2023,XBB.1.5 @@ -2250518,7 +2250449,6 @@ USA/WV-CDC-LC0971720/2022,XBB.1.5 USA/MO-CDC-QDX45690717/2023,XBB.1.5 USA/NY-CDC-QDX45209643/2023,XBB.1.5 USA/NY-NYULH10448/2023,XBB.1.5 -England/BRBR-326CAAAB/2023,XBB.1.5 USA/MD-CDC-VSX-A061108/2023,XBB.1.5 Canada/QC-L00586403001/2023,XBB.1.5 USA/TX-HMH-M-124342/2023,XBB.1.5 @@ -2250597,7 +2250527,6 @@ USA/KY-CDC-LC1011734/2023,XBB.1.5 Luxembourg/LNS8899391/2023,XBB.1.5 USA/IL-CDC-STM-SB7BR65WJ/2023,XBB.1.5 USA/NJ-CDC-QDX46010431/2023,XBB.1.5 -USA/ND-NDDH-22675/2023,XBB.1.5 USA/NJ-CDC-LC0978475/2022,XBB.1.5 USA/DE-DHSS-B1259986/2023,XBB.1.5 USA/ND-NDDH-22875/2023,XBB.1.5 @@ -2250725,7 +2250654,6 @@ 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Canada/BC-BCCDC-595262/2023,XBB.1.5 USA/CT-CDC-LC0964098/2022,XBB.1.5 Sweden/30322103/2023,XBB.1.5 -England/QEUH-326BE002/2023,XBB.1.5 USA/VA-CAV_VAS3N_00018229_01/2023,XBB.1.5 Canada/ON-PHL-12150/2023,XBB.1.5 USA/NY-PRL-221228_00J19/2022,XBB.1.5 @@ -2251449,7 +2251374,6 @@ USA/PA-CDC-QDX46447290/2023,XBB.1.5 USA/NY-URMC-N0S1D724-1/2023,XBB.1.5 USA/NJ-CDC-QDX47311811/2023,XBB.1.5 USA/NY-CDC-QDX46677496/2023,XBB.1.5 -USA/CO-CDPHE-2103772246/2023,XBB.1.5 USA/FL-CDC-QDX47043252/2023,XBB.1.5 USA/MI-UM-10049634609/2023,XBB.1.5 Poland/Kce-220/2023,XBB.1.5 @@ -2251550,7 +2251474,6 @@ Canada/BC-BCCDC-571207/2022,XBB.1.5 USA/MI-CDC-STM-NA44ENT5B/2023,XBB.1.5 USA/MD-CDC-QDX46229078/2023,XBB.1.5 Germany/NI-RKI-I-1108416/2023,XBB.1.5 -USA/FL-CDC-QDX46060367/2023,XBB.1.5 USA/TX-HMH-MCoV-125349/2023,XBB.1.5 USA/NC-CDC-QDX46135333/2023,XBB.1.5 USA/MD-CDC-LC1006028/2023,XBB.1.5 @@ -2251595,7 +2251518,6 @@ USA/NY-CDC-QDX46775594/2023,XBB.1.5 USA/CA-HLX-STM-UX2RPP9HS/2023,XBB.1.5 Canada/QC-LSPQ-L00584780001/2023,XBB.1.5 USA/PA-CDC-QDX46944728/2023,XBB.1.5 -England/PHEC-YYEDIGT/2023,XBB.1.5 England/BRBR-326C388A/2023,XBB.1.5 USA/LA-EVTL18482/2023,XBB.1.5 USA/FL-CDC-QDX46230067/2023,XBB.1.5 @@ -2251634,7 +2251556,6 @@ USA/CA-HLX-STM-6KBG48SDM/2022,XBB.1.5 USA/NJ-CDC-QDX46992216/2023,XBB.1.5 England/PHEC-YYEDTWA/2023,XBB.1.5 Austria/LB-R00128-S072/2023,XBB.1.5 -Canada/QC-L00592827001/2023,XBB.1.5 Austria/AGES-1117808/2023,XBB.1.5 USA/NY-CDC-LC0988650/2023,XBB.1.5 USA/NJ-CDC-815389885/2023,XBB.1.5 @@ -2251702,7 +2251623,6 @@ USA/FL-CDC-813993824/2023,XBB.1.5 Canada/MB-CPL-602365/2023,XBB.1.5 USA/TX-CDC-QDX45962220/2023,XBB.1.5 Canada/QC-L00588913001/2023,XBB.1.5 -Mexico/YUC-LANGEBIO_IMSS_14059/2023,XBB.1.5 England/QEUH-326AF462/2023,XBB.1.5 Canada/QC-L00579300001/2023,XBB.1.5 USA/CA-HLX-STM-AHG83YR97/2023,XBB.1.5 @@ -2251801,7 +2251721,6 @@ USA/PA-CDC-QDX46611599/2023,XBB.1.5 USA/CT-YPL23-735/2023,XBB.1.5 USA/RI-RISHL-E06277/2023,XBB.1.5 Scotland/QEUH-326DB4C7/2023,XBB.1.5 -USA/CA-CDC-QDX46448578/2023,XBB.1.5 Netherlands/GR-UMCG-MMB_7368/2023,XBB.1.5 USA/CO-CDPHE-2103773951/2023,XBB.1.5 USA/CA-CDC-LC1010840/2023,XBB.1.5 @@ -2252021,7 +2251940,6 @@ USA/NY-PRL-221221_00F05/2022,XBB.1.5 USA/TX-HMH-MCoV-123634/2023,XBB.1.5 USA/MI-CDC-QDX47272482/2023,XBB.1.5 USA/PA-CDC-LC0997597/2023,XBB.1.5 -England/QEUH-326DF33F/2023,XBB.1.5 England/PHEC-YY8H1NK/2023,XBB.1.5 USA/CT-DPH-1135278001/2023,XBB.1.5 USA/MD-CDC-LC1009264/2023,XBB.1.5 @@ -2252258,12 +2252176,10 @@ USA/IN-CDC-LC1014568/2023,XBB.1.5 England/BRBR-326B5C8F/2023,XBB.1.5 USA/TX-HMH-M-125873/2023,XBB.1.5 France/NOR-CHUR-76574404/2023,XBB.1.5 -USA/CT-CDC-LC0979292/2022,XBB.1.5 USA/VA-CDC-QDX45638636/2023,XBB.1.5 USA/CA-CDC-STM-C325RRAYT/2022,XBB.1.5 USA/PA-CDC-LC0994184/2023,XBB.1.5 USA/NY-PRL-221221_02D12/2022,XBB.1.5 -USA/TX-CDC-QDX47260573/2023,XBB.1.5 USA/LA-OD-O-5196999038/2023,XBB.1.5 USA/MN-MDH-33979/2023,XBB.1.5 USA/KS-KHEL-13212/2023,XBB.1.5 @@ -2252288,7 +2252204,6 @@ Canada/QC-LSPQ-L00584079001/2023,XBB.1.5 USA/FL-CDC-QDX47260636/2023,XBB.1.5 Australia/SA521843/2023,XBB.1.5 USA/SC-CDC-QDX46446653/2023,XBB.1.5 -USA/CO-CDC-QDX46945265/2023,XBB.1.5 USA/NY-PRL-221221_02E21/2022,XBB.1.5 USA/NY-CDC-QDX45961652/2023,XBB.1.5 Canada/ON-PHL-23-13328/2023,XBB.1.5 @@ -2354429,19 +2354344,6 @@ Indonesia/JK-GS-GSILab-1148670/2023,XBB.1.31 Indonesia/JK-CW62-4157/2023,XBB.1.31 Indonesia/LA-NIHRD-W00813/2023,XBB.1.31 Indonesia/JK-NIHRD-W00709/2023,XBB.1.31 -Indonesia/JK-GS-GSILab-1149671/2023,XBB.1.31 -Indonesia/JK-CW62-4103/2023,XBB.1.31 -Singapore/R21MR348/2023,XBB.1.31 -Singapore/R20MR136/2023,XBB.1.31 -Singapore/R19MR268/2023,XBB.1.31 -Singapore/R21MR14/2023,XBB.1.31 -Indonesia/JK-CW62-4189/2023,XBB.1.31 -Indonesia/JK-CW62-4036/2023,XBB.1.31 -Singapore/R22MR239/2023,XBB.1.31 -Singapore/R21MR307/2023,XBB.1.31 -Singapore/R21MR118/2023,XBB.1.31 -Singapore/R19MR253/2023,XBB.1.31 -Singapore/R20MR198/2023,XBB.1.31 Singapore/15721/2022,XBB.1.32 USA/NJ-CDC-LC0945635/2022,XBB.1.32 Australia/NSW-ICPMR-39424/2022,XBB.1.32 @@ -2359744,7 +2359646,6 @@ Singapore/R21MR177/2023,EG.4 Israel/ICH-741196790/2023,EG.4 Israel/ICH-741197169/2023,EG.4 England/PHEC-YYEONAR/2023,EG.4 -USA/IL-CDC-VSX-A065298/2023,EG.4 Singapore/R19MR25/2023,EG.4 Australia/WA11952/2023,EG.4 Indonesia/JK-CW62-4180/2023,EG.4 @@ -2360061,18 +2359962,6 @@ Japan/PG-464955/2023,EG.4 Japan/PG-463174/2023,EG.4 Japan/TKYkbm88804/2023,EG.4 Japan/TKYkbm88834/2023,EG.4 -USA/NY-GBW-VWPOAAAZ409988/2023,EG.4 -Italy/LOM-IRCCS-01024474/2023,EG.4 -Italy/EMR-IZSLER-075093-009-01/2023,EG.4 -Indonesia/JK-GS-GSILab-1148908/2023,EG.4 -BHR/R25902861864/2023,EG.4 -BHR/23020163267/2023,EG.4 -BHR/23020162497/2023,EG.4 -USA/NY-CDC-LC1031952/2023,EG.4 -BHR/R25902850010/2023,EG.4 -BHR/60518472/2023,EG.4 -BHR/990305902/2023,EG.4 -BHR/221104917/2023,EG.4 Brunei/7723002891/2023,EG.4 Brunei/7723003103/2023,EG.4 Brunei/7723003321/2023,EG.4 @@ -2361956,7 +2361845,6 @@ USA/VA-GBW-H10-010-3738/2023,XBB.1.16.2 India/GJ-INSACOG-GBRC10795/2023,XBB.1.16.2 India/GJ-INSACOG-GBRC10820/2023,XBB.1.16.2 India/GJ-INSACOG-GBRC10636/2023,XBB.1.16.2 -SouthKorea/KDCA228655/2023,XBB.1.16.2 Japan/IC-16474/2023,XBB.1.16.2 India/MH-RFIP17692/2023,XBB.1.16.2 USA/CA-GBW-H10-012-3749/2023,XBB.1.16.2 @@ -2361986,7 +2361874,6 @@ USA/IL-CDC-QDX48685617/2023,XBB.1.16.2 USA/NJ-GBW-H20-293-9471/2023,XBB.1.16.2 Malaysia/IMR_CV05492/2023,XBB.1.16.2 USA/VA-GBW-H20-298-3739/2023,XBB.1.16.2 -Thailand/NIC_CRI_1199/2023,XBB.1.16.2 England/PHEC-YYEUKAS/2023,XBB.1.16.2 India/DL-ILBS-8535/2023,XBB.1.16.2 USA/CA-CDC-LC1036508/2023,XBB.1.16.2 @@ -2386071,288 +2385958,10 @@ USA/OSPHL08427/2023,FD.4 USA/OSPHL08426/2023,FD.4 USA/VA-CAV_VAS3N_00017454_01/2022,FD.4 USA/NC-CDC-LC0986072/2023,FD.4 -Netherlands/UT-RIVM-127251/2023,FD.4 -Netherlands/NH-AUMC-000995/2023,FD.4 -Italy/LOM_Unimi-1694-23/2023,FD.4 -Ireland/D-NVRL-S23IRL00003408/2023,FD.4 -Croatia/HZJZ_3611/2023,FD.4 -Netherlands/FL-RIVM-129374/2023,FD.4 -Italy/LOM_Unimi-1549-23/2023,FD.4 -Netherlands/GE-RIVM-126593/2023,FD.4 -PuertoRico/PRI73638/2023,FD.4 -Belgium/UGent-557/2023,FD.4 -Netherlands/NH-AUMC-000892/2023,FD.4 -Netherlands/ZH-RIVM-126852/2023,FD.4 -Netherlands/NH-inBiome-212691/2023,FD.4 -USA/WI-UW-14876/2023,FD.4 -Austria/LB-R00126-S026/2023,FD.4 -England/PHEC-YYENU1H/2023,FD.4 -Austria/AGES-1127505/2023,FD.4 -India/TG-CDFD-MMG-504/2022,FD.4 -Ireland/MH-NVRL-S23IRL00003627/2023,FD.4 -Ireland/D-NVRL-S23IRL00003401/2023,FD.4 -USA/IL-1122023147/2023,FD.4 -Ireland/MH-NVRL-S23IRL00005396/2023,FD.4 -Ireland/D-BH-170107230/2023,FD.4 -Ireland/D-BH-170109230/2023,FD.4 -Ireland/D-BH-170104230/2023,FD.4 -Ireland/D-BH-170116230/2023,FD.4 -Ireland/D-BH-170108230/2023,FD.4 -Netherlands/ZH-EMC-7741/2023,FD.4 -Ireland/D-NVRL-S23IRL00003410/2023,FD.4 -Ireland/D-BH-170115230/2023,FD.4 -USA/IL-CDC-LC0998181/2023,FD.4 -USA/WI-CDC-VSX-A073770/2023,FD.4 -USA/2241542/2023,FD.4 -Netherlands/NH-inBiome-212679/2023,FD.4 -England/BRBR-326B7B44/2023,FD.4 -NorthernIreland/QEUH-326F76FC/2023,FD.4 -Northern_Ireland/QEUH-326F76FC/2023,FD.4 -Austria/MUIV-1798/2023,FD.4 -Austria/MUIV-1721/2023,FD.4 -USA/WI-WSLH-2300923/2023,FD.4 -USA/IL-SHIELD-3302023070/2023,FD.4 -Germany/SN-RKI-I-1112997/2023,FD.4 Germany/NI-RKI-I-1092810/2023,FD.4 -Switzerland/ZH-UZH-IMV-3ba694c9/2023,FD.4 -Netherlands/OV-RIVM-127628/2023,FD.4 -Belgium/UGent-809/2023,FD.4 -Netherlands/NB-RIVM-127974/2023,FD.4 -Ireland/LH-NVRL-SIRL00012513/2023,FD.4 -Ireland/LH-NVRL-SIRL00014064/2023,FD.4 -Ireland/LH-NVRL-SIRL00012506/2023,FD.4 -England/PHEC-YYEN3EM/2023,FD.4 -England/PHEP-YYGUD7I/2023,FD.4 -England/PHEC-YYE89J3/2023,FD.4 -England/PHEP-YYGT15Q/2023,FD.4 -England/PHEP-YYGT6ZK/2023,FD.4 -England/PHEP-YYG1FM4/2023,FD.4 -England/PHEP-YYGUMEA/2023,FD.4 -England/PHEP-YYGX7JP/2023,FD.4 -Germany/BY-RKI-I-1119836/2023,FD.4 -Germany/BY-RKI-I-1125480/2023,FD.4 Germany/BY-RKI-I-1125464/2023,FD.4 -Germany/BY-RKI-I-1128727/2023,FD.4 -Germany/BB-RKI-I-1113241/2023,FD.4 -Germany/BY-RKI-I-1122645/2023,FD.4 -Ireland/MH-NVRL-SIRL00008211/2023,FD.4 -Ireland/D-NVRL-SIRL00008381/2023,FD.4 -Ireland/G-GUH-N975/2023,FD.4 -Ireland/MH-NVRL-SIRL00009298/2023,FD.4 -Ireland/D-NVRL-SIRL00009236/2023,FD.4 -Ireland/D-NVRL-S23IRL00007228/2023,FD.4 -Ireland/D-CHI-L23IRL01455/2023,FD.4 -USA/PA-CDC-QDX46276116/2023,FD.4 -Netherlands/NH-RIVM-127911/2023,FD.4 -Netherlands/ZH-EMC-7742/2023,FD.4 -Netherlands/ZH-RIVM-126481/2023,FD.4 -Netherlands/ZH-RIVM-126460/2023,FD.4 -Netherlands/NB-MVD-C2300432/2023,FD.4 -Netherlands/NH-RIVM-127322/2023,FD.4 -Netherlands/LI-RIVM-127333/2023,FD.4 -Germany/NW-RKI-I-1117877/2023,FD.4 -Slovenia/10932/2023,FD.4 -Slovenia/17-002597-CE/2023,FD.4 -Netherlands/NH-RIVM-128464/2023,FD.4 -Netherlands/NH-AUMC-000836/2023,FD.4 -Germany/SH-RKI-I-1128647/2023,FD.4 -England/BRBR-326DE46A/2023,FD.4 -France/BFC-HCL723000514801/2023,FD.4 -Scotland/SCOT-28567/2023,FD.4 -Scotland/SCOT-29936/2023,FD.4 -Sweden/30396982/2023,FD.4 -Sweden/01143249/2023,FD.4 -Sweden/30807723/2023,FD.4 -Sweden/30614383/2023,FD.4 -Sweden/30614468/2023,FD.4 -Sweden/30614215/2023,FD.4 -Sweden/31108423/2023,FD.4 -Sweden/01143256/2023,FD.4 -Sweden/03_SE600_000200561287N2/2023,FD.4 -Ireland/D-NVRL-SIRL00013854/2023,FD.4 -Ireland/KE-NVRL-SIRL00015560/2023,FD.4 -England/BRBR-326E8658/2023,FD.4 -Ireland/G-PUH-N1105/2023,FD.4 -Scotland/BRBR-3270F308/2023,FD.4 -Ireland/D-NVRL-SIRL00009224/2023,FD.4 -England/PHEC-YYE8IKB/2023,FD.4 -Ireland/D-NVRL-SIRL00008215/2023,FD.4 -Ireland/D-NVRL-SIRL00010327/2023,FD.4 -Ireland/D-NVRL-SIRL00009262/2023,FD.4 -Ireland/D-NVRL-SIRL00010261/2023,FD.4 -England/BRBR-326DC208/2023,FD.4 -England/BRBR-326DC280/2023,FD.4 -Ireland/WH-NVRL-SIRL00014488/2023,FD.4 -Scotland/SCOT-28178/2023,FD.4 -Scotland/SCOT-27775/2023,FD.4 -Scotland/SCOT-28378/2023,FD.4 -Scotland/SCOT-28355/2023,FD.4 -Scotland/SCOT-28226/2023,FD.4 -USA/NJ-GBW-H20-285-9003/2023,FD.4 -USA/NJ-GBW-H20-297-6914/2023,FD.4 -USA/NJ-GBW-H10-011-5876/2023,FD.4 -Ireland/D-BH-270019230/2023,FD.4 -Australia/WA11872/2023,FD.4 -Iceland/L-3773/2023,FD.4 -England/PHEC-YYEK5OE/2023,FD.4 -Ireland/D-BH-270085230/2023,FD.4 -USA/NY-GBW-H20-314-1933/2023,FD.4 -England/BRBR-32718D59/2023,FD.4 -Denmark/DCGC-646203/2023,FD.4 -Ireland/D-BH-270014230/2023,FD.4 -Wales/PHWC-PKPINJ/2023,FD.4 -Ireland/D-BH-270049230/2023,FD.4 -Ireland/D-BH-270043230/2023,FD.4 -Ireland/D-BH-270042230/2023,FD.4 -Ireland/D-NVRL-SIRL00008116/2023,FD.4 -Ireland/D-BH-270058230/2023,FD.4 -Ireland/D-BH-270071230/2023,FD.4 -Ireland/D-BH-270059230/2023,FD.4 -Ireland/D-BH-270033230/2023,FD.4 -Ireland/D-BH-270011230/2023,FD.4 -Ireland/D-BH-270013230/2023,FD.4 -Ireland/D-BH-270010230/2023,FD.4 -Ireland/D-BH-270032230/2023,FD.4 -Ireland/D-BH-270034230/2023,FD.4 -Ireland/D-BH-270017230/2023,FD.4 -Ireland/D-BH-270093230/2023,FD.4 -Ireland/D-BH-270066230/2023,FD.4 -Ireland/D-BH-270063230/2023,FD.4 -Ireland/D-BH-270056230/2023,FD.4 -Ireland/D-BH-270080230/2023,FD.4 -Luxembourg/LNS5524620/2023,FD.4 Germany/BY-RKI-I-1130259/2023,FD.4 -Belgium/AZDelta-2312-05775/2023,FD.4 -France/ARA-HCL723000418001/2023,FD.4 -Netherlands/ZH-EMC-8013/2023,FD.4 -Netherlands/GE-RIVM-124098/2023,FD.4 -Belgium/Briant-12304118301/2023,FD.4 -Netherlands/ZH-EMC-8038/2023,FD.4 -Belgium/UZA-4817309210/2023,FD.4 -Netherlands/ZH-EMC-7896/2023,FD.4 -Netherlands/LI-RIVM-127217/2023,FD.4 -Netherlands/NB-RIVM-127040/2023,FD.4 -Netherlands/NH-RIVM-126635/2023,FD.4 -Netherlands/ZH-EMC-7763/2023,FD.4 -Netherlands/NB-PAMM-B11-0018/2023,FD.4 -Netherlands/NH-AUMC-000441/2023,FD.4 -Netherlands/NB-RIVM-127464/2023,FD.4 -Netherlands/ZH-RIVM-125330/2023,FD.4 -Netherlands/ZH-RIVM-124753/2023,FD.4 -Netherlands/ZH-EMC-7682/2023,FD.4 -Netherlands/ZH-EMC-7669/2023,FD.4 -Netherlands/NH-AUMC-000490/2023,FD.4 -Netherlands/UT-RIVM-128381/2023,FD.4 -Netherlands/ZH-RIVM-125839/2023,FD.4 -Netherlands/NH-RIVM-126261/2023,FD.4 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+Ireland/D-NVRL-SIRL00012186/2023,FD.4.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 6dfbe242..c2c09328 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -185,6 +185,7 @@ "HF": "XBB.1.16.13", "HG": "XBB.2.3.8", "HH": "XBB.2.3.2", + "HJ": "XBB.1.5.1", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],