From 73311a4fbe3418dac8128a1647a88b1282ccfa70 Mon Sep 17 00:00:00 2001 From: InfrPopGen Date: Thu, 14 Jul 2022 14:10:36 +0100 Subject: [PATCH] Added new lineage Bf.6 from #821 with 55 new sequence designations, and 5 updated designations from BA.5.2.1 --- lineage_notes.txt | 1 + lineages.csv | 65 +++++++++++++++++++++++++++++++++++++++++++---- 2 files changed, 61 insertions(+), 5 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index fb4dfa59..dc3c918a 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -800,6 +800,7 @@ BF.2 Alias of B.1.1.529.5.2.1.2, Denmark lineage BF.3 Alias of B.1.1.529.5.2.1.3, India lineage BF.4 Alias of B.1.1.529.5.2.1.4, mainly found in England, from pango-designation issue #788 BF.5 Alias of B.1.1.529.5.2.1.5, Israel lineage +BF.6 Alias of B.1.1.529.5.2.1.6, mainly found in England and Scotland, from pango-designation issue #821 BA.5.2.2 Alias of B.1.1.529.5.2.2, France and Martinique lineage BA.5.2.3 Alias of B.1.1.529.5.2.3, UK lineage BA.5.2.4 Alias of B.1.1.529.5.2.4, Australia lineage diff --git a/lineages.csv b/lineages.csv index 331afc2d..2f44ee2e 100644 --- a/lineages.csv +++ b/lineages.csv @@ -1814581,7 +1814581,7 @@ Belgium/rega-42806/2022,BA.5.2.1 Israel/ICH-741232299/2022,BF.5 Israel/SMC-7073995/2022,BF.5 Spain/CT-HUJT-RB33006/2022,BA.5.2.1 -England/LSPA-3E5DBC0/2022,BA.5.2.1 +England/LSPA-3E5DBC0/2022,BF.6 England/LSPA-3E4D774/2022,BA.5.2.1 Israel/ICH-741232907/2022,BF.5 Israel/ICH-741229698/2022,BF.5 @@ -1814643,7 +1814643,7 @@ Belgium/Jessa_31-2224-000113/2022,BA.5.2.1 Israel/ICH-741229986/2022,BF.5 Brazil/RJ-FIOCRUZ-12818/2022,BA.5.2.1 Israel/ICH-741231153/2022,BA.5.2.1 -England/LSPA-3E52651/2022,BA.5.2.1 +England/LSPA-3E52651/2022,BF.6 England/LSPA-3E67826/2022,BA.5.2.1 Germany/MV-RKI-I-874645/2022,BA.5.2.1 Switzerland/GE-HUG-38076784/2022,BA.5.2.1 @@ -1814942,7 +1814942,7 @@ Israel/SMC-7074359/2022,BA.5.2.1 USA/CA-CDC-LC0662300/2022,BA.5.2.1 Denmark/DCGC-531807/2022,BA.5.2.1 Denmark/DCGC-534958/2022,BF.5 -Scotland/LSPA-3E46ADC/2022,BA.5.2.1 +Scotland/LSPA-3E46ADC/2022,BF.6 Israel/ICH-741231651/2022,BF.5 Wales/PHWC-PJH6R6/2022,BA.5.2.1 USA/WI-MCRI-009507/2022,BA.5.2.1 @@ -1815263,7 +1815263,7 @@ Denmark/DCGC-533222/2022,BA.5.2.1 USA/NY-PRL-220613_00L14/2022,BA.5.2.1 Germany/BW-RKI-I-863607/2022,BA.5.2.1 USA/CA-CDC-LC0707614/2022,BA.5.2.1 -Wales/LSPA-3E567F0/2022,BA.5.2.1 +Wales/LSPA-3E567F0/2022,BF.6 England/QEUH-3E5D7EA/2022,BA.5.2.1 Singapore/6821/2022,BA.5.2.1 France/OCC-HCL722003026901/2022,BA.5.2.1 @@ -1816287,7 +1816287,7 @@ Denmark/DCGC-527063/2022,BA.5.2.1 USA/TX-CDC-STM-4DFM4ZHPV/2022,BA.5.2.1 Israel/ICH-741233286/2022,BF.5 USA/NC-1086-3040/2022,BA.5.2.1 -England/LSPA-3E4871F/2022,BA.5.2.1 +England/LSPA-3E4871F/2022,BF.6 Israel/SMC-7073707/2022,BA.5.2.1 Belgium/UZA-UA-CV8488366835/2022,BA.5.2.1 Switzerland/ZH-ETHZ-37515071/2022,BA.5.2.1 @@ -1914208,3 +1914208,58 @@ USA/MI-UM-10045427685/2022,BA.2.13.1 USA/NV-NSPHL-22-00056519/2022,BA.2.13.1 USA/AL-CDC-STM-DHGXGTG4E/2022,BA.2.13.1 USA/CA-CDC-LC0621600/2022,BA.2.13.1 +Scotland/LSPA-3E70DEF/2022,BF.6 +England/QEUH-3E61929/2022,BF.6 +Denmark/DCGC-538703/2022,BF.6 +England/LSPA-3E765D2/2022,BF.6 +England/LSPA-3E71BF3/2022,BF.6 +Belgium/UZA-UA-3817249200/2022,BF.6 +Denmark/DCGC-538799/2022,BF.6 +England/LSPA-3E6704C/2022,BF.6 +England/LSPA-3E48B40/2022,BF.6 +Scotland/LSPA-3E740A6/2022,BF.6 +England/PHEC-YYFT7B3/2022,BF.6 +England/PHEC-YYFOZ16/2022,BF.6 +England/LSPA-3E662A1/2022,BF.6 +England/QEUH-3E6899B/2022,BF.6 +England/LSPA-3E67264/2022,BF.6 +Italy/CAM-20220622838_IZSM_COLLI_TIGEM/2022,BF.6 +England/LSPA-3E6AC63/2022,BF.6 +Scotland/QEUH-3E7D0DA/2022,BF.6 +England/QEUH-3E68B0E/2022,BF.6 +England/PHEC-YYFO5KM/2022,BF.6 +England/PHEC-YYF1DRM/2022,BF.6 +Denmark/DCGC-536651/2022,BF.6 +Denmark/DCGC-538611/2022,BF.6 +England/QEUH-3E6BF4B/2022,BF.6 +Scotland/LSPA-3E72C2C/2022,BF.6 +England/LSPA-3E4E148/2022,BF.6 +England/QEUH-3E68C83/2022,BF.6 +Belgium/UZA-UA-CV8297234601/2022,BF.6 +England/QEUH-3E30A4E/2022,BF.6 +England/QEUH-3E69EB9/2022,BF.6 +England/LSPA-3E74AB7/2022,BF.6 +England/LSPA-3E72433/2022,BF.6 +England/LSPA-3E4F5C3/2022,BF.6 +Canada/ON-PHL-22-24783/2022,BF.6 +England/LSPA-3E79CE9/2022,BF.6 +England/QEUH-3E74E33/2022,BF.6 +England/LSPA-3E71416/2022,BF.6 +Scotland/LSPA-3E72169/2022,BF.6 +Belgium/UZA-UA-CV8297741223/2022,BF.6 +Ireland/LD-Enfer-160622005_F4/2022,BF.6 +England/QEUH-3E56AF7/2022,BF.6 +Australia/NSW-ICPMR-27947/2022,BF.6 +Scotland/LSPA-3E6F976/2022,BF.6 +Denmark/DCGC-538650/2022,BF.6 +England/QEUH-3E7CB07/2022,BF.6 +England/QEUH-3E74C57/2022,BF.6 +Scotland/EDB63220/2022,BF.6 +England/LSPA-3E7651E/2022,BF.6 +Denmark/DCGC-537172/2022,BF.6 +France/CVL-HMN-22062170374/2022,BF.6 +England/LSPA-3E5FD7D/2022,BF.6 +England/LSPA-3E43CE8/2022,BF.6 +England/LSPA-3E6B9D4/2022,BF.6 +England/LSPA-3E59283/2022,BF.6 +Scotland/LSPA-3E4E0F0/2022,BF.6