From 56e3ad0411769d342772935635f611dfaa29da79 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Thu, 24 Aug 2023 22:31:18 +0200 Subject: [PATCH] Designate GM.3 (XBB.2.3.6.3, ORF1a:R4017K) and GM.3.1 (S:N388K, Japan) with 250/60 seqs --- lineage_notes.txt | 2 + lineages.csv | 285 +++++++++++++++++++++++++++++++++++++++++++--- 2 files changed, 270 insertions(+), 17 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index c28d676a..d2378bf1 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3174,6 +3174,8 @@ XBB.2.3.5 S:K478N, found mainly in USA and India, from pango-designation issue # XBB.2.3.6 N:T166I, mainly Singapore GM.1 Alias of XBB.2.3.6.1, S:P621S, Singapore GM.2 Alias of XBB.2.3.6.2, S:G181R, Singapore +GM.3 Alias of XBB.2.3.6.3, ORF1a:R4017K, Singapore +GM.3.1 Alias of XBB.2.3.6.3.1, S:N388K, Japan XBB.2.3.7 ORF1a:T4087I XBB.2.3.8 C2013T, T16389C, S:478R, Singapore/SouthKorea from #1866 HG.1 Alias of XBB.2.3.8.1, S:S98F, South Korea diff --git a/lineages.csv b/lineages.csv index d07d04ca..2acfbde4 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2356813,23 +2356813,6 @@ Singapore/NPHL-R22MR246/2023,XBB.2.3.6 Singapore/R21MR472/2023,XBB.2.3.6 Singapore/R22MR191/2023,XBB.2.3.6 Singapore/R22MR167/2023,XBB.2.3.6 -Singapore/R3NP83/2023,XBB.2.3.6 -Singapore/R21MR109/2023,XBB.2.3.6 -Singapore/NPHL-R22MR426/2023,XBB.2.3.6 -Singapore/NPHL-R22MR492/2023,XBB.2.3.6 -Singapore/NPHL-R22MR455/2023,XBB.2.3.6 -Singapore/NPHL-R23MR44/2023,XBB.2.3.6 -Singapore/NPHL-R22MR427/2023,XBB.2.3.6 -CHN/ZJCDC529/2023,XBB.2.3.6 -Singapore/R20MR176/2023,XBB.2.3.6 -Singapore/NPHL-R23MR112/2023,XBB.2.3.6 -Singapore/NPHL-R22MR350/2023,XBB.2.3.6 -Singapore/R22MR144/2023,XBB.2.3.6 -Singapore/R21MR226/2023,XBB.2.3.6 -Singapore/R20MR197/2023,XBB.2.3.6 -Singapore/NPHL-R23MR105/2023,XBB.2.3.6 -Singapore/NPHL-R23MR29/2023,XBB.2.3.6 -Singapore/NPHL-R22MR481/2023,XBB.2.3.6 USA/CA-GBW-H20-270-6929/2023,XBB.2.3.7 India/KA-SLS-53015/2023,XBB.2.3.7 USA/MA-CDC-LC1010089/2023,XBB.2.3.7 @@ -2457271,3 +2457254,271 @@ Canada/ON-PHL-23-27997/2023,XCJ Canada/ON-PHL-23-27998/2023,XCJ Canada/ON-PHL-23-28030/2023,XCJ Canada/ON-PHL-23-27995/2023,XCJ +USA/CA-SC-279652/2023,GM.3 +Singapore/R36MR139/2023,GM.3 +Singapore/R34MR41/2023,GM.3 +Singapore/R34MR181/2023,GM.3 +USA/CA-HLX-STM-EAM68Y5FW/2023,GM.3 +Singapore/R32MR112/2023,GM.3 +Indonesia/JK-NIHRD-W01610/2023,GM.3 +Malaysia/UNIMAS-HSIBUML572/2023,GM.3 +Singapore/R30MR117/2023,GM.3 +Singapore/R29MR79/2023,GM.3 +Singapore/R29MR149/2023,GM.3 +USA/CA-CDPH-A3000000315377/2023,GM.3 +USA/CA-MCPHL-23-01767/2023,GM.3 +Singapore/R8NP55/2023,GM.3 +Malaysia/MKAI-6798266/2023,GM.3 +Singapore/NPHL-R23MR112/2023,GM.3 +Singapore/R31MR70/2023,GM.3 +Singapore/R3NP83/2023,GM.3 +Singapore/R21MR109/2023,GM.3 +Singapore/NPHL-R22MR426/2023,GM.3 +Singapore/NPHL-R22MR492/2023,GM.3 +Singapore/R21MR226/2023,GM.3 +Singapore/NPHL-R22MR455/2023,GM.3 +Singapore/NPHL-R23MR44/2023,GM.3 +Singapore/NPHL-R22MR427/2023,GM.3 +CHN/ZJCDC529/2023,GM.3 +Singapore/R23MR293/2023,GM.3 +Singapore/R23MR284/2023,GM.3 +Singapore/R20MR176/2023,GM.3 +CHN/GDCDC_SZHG_2292/2023,GM.3 +Singapore/R20MR197/2023,GM.3 +Malaysia/C19UMB4107/2023,GM.3 +Singapore/R45MR88/2023,GM.3 +Japan/IC-16581/2023,GM.3 +Japan/TKYnat13245/2023,GM.3 +Singapore/R33MR90/2023,GM.3 +Singapore/R7NP44/2023,GM.3 +Singapore/R35MR100/2023,GM.3 +Singapore/R43MR72/2023,GM.3 +Singapore/R35MR102/2023,GM.3 +Singapore/R40MR115/2023,GM.3 +Singapore/R26MR154/2023,GM.3 +Singapore/R7NP63/2023,GM.3 +Singapore/R24MR328/2023,GM.3 +Singapore/R23MR187/2023,GM.3 +Singapore/R23MR198/2023,GM.3 +Singapore/R22MR144/2023,GM.3 +Singapore/R36MR4/2023,GM.3 +Singapore/R35MR19/2023,GM.3 +Singapore/R6NP9/2023,GM.3 +Singapore/R25MR55/2023,GM.3 +Singapore/NPHL-R22MR350/2023,GM.3 +Singapore/R26MR28/2023,GM.3 +Australia/VIC-VIDRL-00010369/2023,GM.3 +Singapore/R30MR7/2023,GM.3 +USA/CA-GBW-H20-332-7708/2023,GM.3 +USA/CA-GBW-H10-015-3362/2023,GM.3 +Singapore/R33MR159/2023,GM.3 +Singapore/R33MR15/2023,GM.3 +SouthKorea/KDCA239486/2023,GM.3 +SouthKorea/KDCA239461/2023,GM.3 +SouthKorea/KDCA240408/2023,GM.3 +SouthKorea/KDCA240493/2023,GM.3 +Japan/TKYmbc37817/2023,GM.3 +SouthKorea/KDCA244031/2023,GM.3 +USA/HI-CDC-QDX49722919/2023,GM.3 +SouthKorea/KDCA243682/2023,GM.3 +Taiwan/CDC-F80078/2023,GM.3 +Japan/PG-537106/2023,GM.3 +Japan/PG-537850/2023,GM.3 +SouthKorea/KDCA245271/2023,GM.3 +SouthKorea/KDCA245281/2023,GM.3 +Belgium/ULG-29825/2023,GM.3 +Singapore/R25MR69/2023,GM.3 +France/ARA-HCL-723000680601/2023,GM.3 +Singapore/R32MR193/2023,GM.3 +Singapore/R35MR13/2023,GM.3 +Singapore/R34MR237/2023,GM.3 +France/IDF-IPP15422/2023,GM.3 +Spain/MD-HRYC-12771563/2023,GM.3 +SouthKorea/KDCA243149/2023,GM.3 +Malaysia/IMR_CV05705/2023,GM.3 +Singapore/R48MR100/2023,GM.3 +Singapore/R27MR111/2023,GM.3 +Singapore/R27MR6/2023,GM.3 +Singapore/NPHL-R22MR481/2023,GM.3 +Singapore/R28MR94/2023,GM.3 +Singapore/R24MR348/2023,GM.3 +Singapore/R24MR557/2023,GM.3 +Singapore/R27MR110/2023,GM.3 +Singapore/R7NP16/2023,GM.3 +Singapore/R8NP92/2023,GM.3 +Singapore/R24MR589/2023,GM.3 +Singapore/R23MR389/2023,GM.3 +Singapore/R23MR442/2023,GM.3 +Singapore/NPHL-R23MR105/2023,GM.3 +Thailand/21-1659-8-02/2023,GM.3 +Thailand/NIC_NBI_1666/2023,GM.3 +Singapore/R41MR75/2023,GM.3 +Singapore/R27MR184/2023,GM.3 +Spain/CT-HUB08372/2023,GM.3 +Spain/CT-HUB08363/2023,GM.3 +SouthKorea/KDCA248356/2023,GM.3 +SouthKorea/KDCA243125/2023,GM.3 +CHN/HG20230420-262/2023,GM.3 +Shanghai/SCDC-HG0420-262/2023,GM.3 +Singapore/R27MR33/2023,GM.3 +Singapore/R28MR11/2023,GM.3 +France/HDF-IPP14295/2023,GM.3 +France/GES-IPP14303/2023,GM.3 +Indonesia/JK-NIHRD-W02692/2023,GM.3 +Indonesia/JK-NIHRD-W02691/2023,GM.3 +Singapore/R27AMR144/2023,GM.3 +Singapore/R27AMR149/2023,GM.3 +Singapore/R27AMR146/2023,GM.3 +Luxembourg/LNS9866519/2023,GM.3 +Greece/NPHO-6043/2023,GM.3 +Greece/NPHO-6046/2023,GM.3 +Malaysia/IMR_LF04192/2023,GM.3 +Malaysia/IMR_LF03256/2023,GM.3 +Malaysia/IMR_LF03176/2023,GM.3 +Singapore/R24MR305/2023,GM.3 +Singapore/R30MR143/2023,GM.3 +Singapore/R24MR63/2023,GM.3 +Singapore/R24MR523/2023,GM.3 +Singapore/R29MR195/2023,GM.3 +Singapore/R30MR2/2023,GM.3 +Singapore/R25MR35/2023,GM.3 +Singapore/R29MR14/2023,GM.3 +Singapore/R30MR56/2023,GM.3 +Singapore/R40MR109/2023,GM.3 +Singapore/R41MR109/2023,GM.3 +Singapore/R34MR212/2023,GM.3 +Ukraine/79770/2023,GM.3 +Italy/VEN-ULSS3GEN-7002574679_VE/2023,GM.3 +Italy/VEN-IZSVe-23RS8120-1_TV/2023,GM.3 +USA/CA-HLX-STM-AC3UC7WK5/2023,GM.3 +USA/HI-H2322794/2023,GM.3 +USA/HI-H2322716/2023,GM.3 +USA/HI-H2322960/2023,GM.3 +USA/HI-H2322744/2023,GM.3 +Singapore/R23MR404/2023,GM.3 +Japan/PG-472712/2023,GM.3 +Singapore/NPHL-R23MR29/2023,GM.3 +Malaysia/USM_M383_39946/2023,GM.3 +Singapore/R43MR65/2023,GM.3 +Singapore/R35MR143/2023,GM.3 +Singapore/R30MR52/2023,GM.3 +Singapore/R26MR189/2023,GM.3 +Singapore/R42MR72/2023,GM.3 +Singapore/R44MR86/2023,GM.3 +Singapore/R39MR113/2023,GM.3 +Canada/ON-PHL-23-24570/2023,GM.3 +Canada/ON-PHL-23-24220/2023,GM.3 +Brunei/MGS-7123042271/2023,GM.3 +Canada/ON-PHL-23-26779/2023,GM.3 +Malaysia/IMR_CV05782/2023,GM.3 +Canada/NB-CHUDGLD-15F-MM00029R/2023,GM.3 +Canada/ON-PHL-23-25670/2023,GM.3 +Singapore/R39MR80/2023,GM.3 +Canada/ON-PHL-23-23680/2023,GM.3 +Canada/QC-L00617255001/2023,GM.3 +Canada/QC-L00622909001/2023,GM.3 +Canada/NB-CHUDGLD-15F-MM00043R/2023,GM.3 +Canada/QC-L00618835001/2023,GM.3 +Canada/NB-CHUDGLD-17F-MM00020R/2023,GM.3 +USA/FL-CDC-QDX82198879/2023,GM.3 +Canada/NL-PHML-634897/2023,GM.3 +Canada/NS-NSH-631419/2023,GM.3 +Canada/QC-L00616379001/2023,GM.3 +Canada/QC-L00617284001/2023,GM.3 +Canada/QC-L00618795001/2023,GM.3 +Canada/ON-KHS-04410-v1/2023,GM.3 +Canada/ON-KHS-04411-v1/2023,GM.3 +USA/NY-CDC-QDX82752783/2023,GM.3 +USA/NY-CDC-QDX82631707/2023,GM.3 +USA/NY-CDC-QDX81328294/2023,GM.3 +USA/CA-CDPH-500117892/2023,GM.3 +USA/CA-CDC-LC1045615/2023,GM.3 +Canada/AB-ABPHL-99437/2023,GM.3 +Canada/AB-ABPHL-99232/2023,GM.3 +Canada/AB-ABPHL-99181/2023,GM.3 +Canada/AB-ABPHL-99011/2023,GM.3 +Canada/AB-ABPHL-99415/2023,GM.3 +Canada/AB-ABPHL-99373/2023,GM.3 +Japan/PG-548657/2023,GM.3 +Japan/PG-541582/2023,GM.3 +Japan/PG-540480/2023,GM.3 +Japan/PG-530281/2023,GM.3 +Singapore/R36MR36/2023,GM.3 +Singapore/R34MR160/2023,GM.3 +Japan/PG-541573/2023,GM.3 +Japan/PG-555702/2023,GM.3 +Japan/PG-555715/2023,GM.3 +Japan/PG-531395/2023,GM.3 +Japan/PG-531495/2023,GM.3 +Japan/PG-535827/2023,GM.3 +Japan/PG-527277/2023,GM.3 +Japan/PG-530042/2023,GM.3 +Japan/PG-530035/2023,GM.3 +Japan/PG-530041/2023,GM.3 +Japan/PG-539753/2023,GM.3 +Japan/TKYmbc37967/2023,GM.3 +Japan/PG-545470/2023,GM.3 +Japan/PG-545469/2023,GM.3 +Japan/PG-530307/2023,GM.3 +Japan/PG-545467/2023,GM.3 +Japan/SUPCRC-5248/2023,GM.3 +Japan/PG-527479/2023,GM.3.1 +Japan/PG-545169/2023,GM.3.1 +Japan/TKYmbc38188/2023,GM.3.1 +Japan/PG-553091/2023,GM.3.1 +Japan/PG-555756/2023,GM.3.1 +Japan/PG-554784/2023,GM.3.1 +Japan/PG-529990/2023,GM.3.1 +Japan/PG-551490/2023,GM.3.1 +Japan/PG-549561/2023,GM.3.1 +Japan/PG-553145/2023,GM.3.1 +Japan/PG-536599/2023,GM.3.1 +Japan/PG-550413/2023,GM.3.1 +Japan/TKYnat14346/2023,GM.3.1 +Japan/PG-549632/2023,GM.3.1 +Japan/PG-549631/2023,GM.3.1 +Japan/PG-545155/2023,GM.3.1 +Japan/PG-555730/2023,GM.3.1 +Japan/PG-541606/2023,GM.3.1 +Japan/PG-548091/2023,GM.3.1 +Japan/PG-530126/2023,GM.3.1 +Japan/PG-537585/2023,GM.3.1 +Japan/PG-555555/2023,GM.3.1 +Japan/PG-545157/2023,GM.3.1 +Japan/PG-540564/2023,GM.3.1 +Japan/PG-540473/2023,GM.3.1 +Japan/PG-541827/2023,GM.3.1 +Japan/PG-547028/2023,GM.3.1 +Japan/PG-544820/2023,GM.3.1 +Japan/PG-549386/2023,GM.3.1 +Japan/PG-549422/2023,GM.3.1 +Japan/PG-546343/2023,GM.3.1 +Japan/PG-537445/2023,GM.3.1 +Japan/PG-555535/2023,GM.3.1 +Japan/PG-553589/2023,GM.3.1 +Japan/PG-553113/2023,GM.3.1 +Japan/PG-548626/2023,GM.3.1 +Japan/PG-546130/2023,GM.3.1 +Japan/PG-541783/2023,GM.3.1 +Japan/PG-550619/2023,GM.3.1 +Japan/PG-536085/2023,GM.3.1 +Japan/PG-540577/2023,GM.3.1 +Japan/PG-548332/2023,GM.3.1 +Japan/PG-540319/2023,GM.3.1 +Japan/PG-546491/2023,GM.3.1 +Japan/PG-540570/2023,GM.3.1 +Japan/PG-540569/2023,GM.3.1 +USA/VA-GBW-H10-014-9589/2023,GM.3.1 +USA/VA-GBW-H20-315-5733/2023,GM.3.1 +USA/VA-GBW-H10-014-9064/2023,GM.3.1 +Japan/PG-541945/2023,GM.3.1 +Japan/PG-546006/2023,GM.3.1 +Japan/PG-555713/2023,GM.3.1 +Japan/PG-544350/2023,GM.3.1 +Japan/PG-544338/2023,GM.3.1 +Japan/PG-530139/2023,GM.3.1 +Japan/PG-543030/2023,GM.3.1 +Japan/PG-542540/2023,GM.3.1 +Japan/PG-547058/2023,GM.3.1 +Japan/PG-551570/2023,GM.3.1 +Japan/PG-546342/2023,GM.3.1