diff --git a/lineage_notes.txt b/lineage_notes.txt index aabb4307..a3b9d4bb 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2613,6 +2613,7 @@ XBB.2.3 Defined by S:P521S and S:S486P, India/Indonesia/Singapore/USA XBB.2.4 Defined by S:S486P, Spain/Denmark/Germany XBB.2.5 S:Q613H, from https://github.com/jmcbroome/auto-pango-designation/pull/193 XBB.2.6 Mostly Peru, C5144T, T5731A +XBB.2.7 ORF1a:R3662H, parent of lineage proposed in #1725 XBB.3 Defined by ORF1b:I1988V on ORF1a:D82G branch XBB.3.1 Defined by S:Q677R, India-TN/Singapore, from issue #1241 XBB.3.2 Defined by S:M177T diff --git a/lineages.csv b/lineages.csv index b9f3a9f8..a8957207 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2237796,4 +2237796,159 @@ Japan/PG-454362/2023,XBJ Japan/PG-454351/2023,XBJ Japan/PG-452489/2023,XBJ Japan/PG-448016/2023,XBJ +India/WB-1931300716947/2022,XBB.2.7 +India/MH-KasturbaMCGM-ICMR-INSACOG-WG5309/2022,XBB.2.7 +SouthKorea/KDCA156133/2022,XBB.2.7 +India/KA-ICMR-VRDL-MYS-20541/2022,XBB.2.7 +Portugal/PT44661/2022,XBB.2.7 +India/WB-1931503343621/2022,XBB.2.7 +USA/MN-CDC-STM-SFQEWA5NK/2022,XBB.2.7 +India/WB-1931300716216/2022,XBB.2.7 +Russia/MOW-RII-MH116107S/2022,XBB.2.7 +India/WB-1931503364304/2022,XBB.2.7 +India/WB-1931300717153/2022,XBB.2.7 +India/TN-CDFD-N-89/2022,XBB.2.7 +India/WB-1931300718351/2022,XBB.2.7 +India/KA-20116_S145_R1_001/2022,XBB.2.7 +India/KA-SLS-48009/2022,XBB.2.7 +India/WB-1931300718353/2022,XBB.2.7 +India/KA-RFNB-18783/2022,XBB.2.7 +India/KA-RFNB-18808/2022,XBB.2.7 +Spain/PV-HUB-50380068/2022,XBB.2.7 +Spain/PV-HUD-78336243/2022,XBB.2.7 +Malaysia/IMR_LF02036/2022,XBB.2.7 +Malaysia/IMR_CV05297/2022,XBB.2.7 +India/KL-2302-TVM-12397/2023,XBB.2.7 +India/KL-170-EKM-12131/2022,XBB.2.7 +India/WB-1931300716241/2022,XBB.2.7 +India/WB-1931300716303/2022,XBB.2.7 +India/GJ-INSACOG-GBRC9709/2022,XBB.2.7 +India/GJ-INSACOG-GBRC9688/2022,XBB.2.7 +India/KA-RFNB-18583/2022,XBB.2.7 +India/KA-RFNB-18610/2022,XBB.2.7 +NewZealand/22XA3912/2022,XBB.2.7 +India/GJ-INSACOG-GBRC9347/2022,XBB.2.7 +India/KA-RFNB-18865/2022,XBB.2.7 +India/KA-RFNB-18552/2022,XBB.2.7 +India/KL-170-EKM-12150/2022,XBB.2.7 +India/TN-CDFD-O-123/2022,XBB.2.7 +USA/OH-CDC-QDX46060497/2023,XBB.2.7 +India/KA-SLS-50043/2022,XBB.2.7 +Ireland/D-NVRL-ecS22IRL00453525/2022,XBB.2.7 +Ireland/D-NVRL-ecS22IRL00454177/2022,XBB.2.7 +India/KA-ICMR-VRDL-MYS-23363/2022,XBB.2.7 +India/KA-ICMR-VRDL-MYS-24936/2022,XBB.2.7 +NorthernIreland/QEUH-325F58CC/2022,XBB.2.7 +NorthernIreland/QEUH-325F61EE/2022,XBB.2.7 +BHR/22020638880/2022,XBB.2.7 +BHR/650111532/2022,XBB.2.7 +Canada/un-NML-513987/2022,XBB.2.7 +India/MH-KasturbaMCGM-ICMR-INSACOG-WG5207/2022,XBB.2.7 +India/WB-1931300721257/2022,XBB.2.7 +Australia/NSW-ICPMR-36901/2022,XBB.2.7 +USA/UT-UPHL-230106107750/2022,XBB.2.7 +Spain/MC-HCUVA-11070955/2022,XBB.2.7 +USA/MD-IGS-042234000351A/2022,XBB.2.7 +India/WB-1931503353016/2022,XBB.2.7 +India/MH_BJCOG_4762/2022,XBB.2.7 +India/GJ-INSACOG-GBRC9673/2022,XBB.2.7 +USA/CO-CDPHE-2103769431/2023,XBB.2.7 +USA/TN-SPHL-5596/2022,XBB.2.7 +Luxembourg/LNS2411154/2022,XBB.2.7 +Luxembourg/LNS0678741/2022,XBB.2.7 +Luxembourg/LNS0598783/2022,XBB.2.7 +Luxembourg/LNS5589996/2022,XBB.2.7 +Luxembourg/LNS6585927/2022,XBB.2.7 +Luxembourg/LNS7653954/2022,XBB.2.7 +Luxembourg/LNS6970118/2022,XBB.2.7 +Luxembourg/LNS9809270/2022,XBB.2.7 +Luxembourg/LNS0342177/2022,XBB.2.7 +Luxembourg/LNS3772941/2022,XBB.2.7 +England/PHEC-YY87KQA/2022,XBB.2.7 +England/PHEC-YY8ZA8R/2022,XBB.2.7 +England/LSPA-32648E8B/2022,XBB.2.7 +England/QEUH-32664DC8/2022,XBB.2.7 +NewZealand/22XA5474/2022,XBB.2.7 +Northern_Ireland/NIRE-01fff1/2023,XBB.2.7 +NorthernIreland/QEUH-326A9714/2023,XBB.2.7 +NorthernIreland/QEUH-326A6C18/2023,XBB.2.7 +Mexico/SIN-InDRE-FB1239/2023,XBB.2.7 +Mexico/CMX-INMEGEN-96-292/2022,XBB.2.7 +Canada/ON-PHL-10519-v2/2023,XBB.2.7 +USA/CA-SCPHL-00235/2023,XBB.2.7 +USA/CA-HLX-STM-H5DGX88ZR/2022,XBB.2.7 +USA/CA-CDPH-500098964/2022,XBB.2.7 +Mexico/PUE-LANGEBIO_IMSS_14100/2023,XBB.2.7 +USA/CA-CDC-QDX45530599/2023,XBB.2.7 +USA/CA-HLX-STM-E5RK254HA/2023,XBB.2.7 +USA/CA-HLX-STM-JBWNGZ8UB/2023,XBB.2.7 +USA/CA-HLX-STM-55Y2KUA9G/2023,XBB.2.7 +USA/CA-HLX-STM-VVJ7WB3WZ/2023,XBB.2.7 +Netherlands/NH-inBiome-212352/2022,XBB.2.7 +Netherlands/NH-AUMC-034167/2022,XBB.2.7 +Netherlands/GR-RIVM-120057/2022,XBB.2.7 +Netherlands/GE-RIVM-121416/2022,XBB.2.7 +Denmark/DCGC-612220/2022,XBB.2.7 +France/ARA-CHUGA-2111495163/2022,XBB.2.7 +France/ARA-HCL022196374102/2022,XBB.2.7 +Netherlands/NH-RIVM-119608/2022,XBB.2.7 +USA/NY-CDC-LC0964674/2022,XBB.2.7 +Netherlands/ZE-RIVM-123884/2022,XBB.2.7 +Netherlands/ZE-RIVM-124522/2022,XBB.2.7 +Netherlands/NH-AUMC-034226/2022,XBB.2.7 +Netherlands/NH-RIVM-125305/2023,XBB.2.7 +Luxembourg/LNS7513691/2022,XBB.2.7 +Netherlands/NB-RIVM-124537/2022,XBB.2.7 +Netherlands/ZH-RIVM-122005/2022,XBB.2.7 +India/KA-SLS-50007/2022,XBB.2.7 +Singapore/R19MR87/2023,XBB.2.7 +India/KA-BMCRI-1177/2023,XBB.2.7 +Singapore/R10MR124/2023,XBB.2.7 +Singapore/R10MR127/2023,XBB.2.7 +Scotland/SCOT-25754/2023,XBB.2.7 +Scotland/QEUH-326E9AF1/2023,XBB.2.7 +OX450901.1,XBB.2.7 +OX450977.1,XBB.2.7 +Scotland/QEUH-326EA638/2023,XBB.2.7 +Denmark/DCGC-642263/2023,XBB.2.7 +Denmark/DCGC-643211/2023,XBB.2.7 +Denmark/DCGC-642243/2023,XBB.2.7 +Switzerland/SG-Risch-1114R14614/2022,XBB.2.7 +Austria/AGES-1166392/2022,XBB.2.7 +Austria/LB-R00111-S368/2022,XBB.2.7 +France/IDF-IPP57078/2022,XBB.2.7 +Spain/CT-HUVH-E30505/2022,XBB.2.7 +Spain/CT-HUVH-E30253/2022,XBB.2.7 +France/IDF-HMN-22122050260/2022,XBB.2.7 +France/IDF-HMN-22112300587/2022,XBB.2.7 +France/IDF-HMN-22112300206/2022,XBB.2.7 +France/IDF-HMN-22122140099/2022,XBB.2.7 +France/IDF-HMN-22122180030/2022,XBB.2.7 +France/IDF-HMN-22122220183/2022,XBB.2.7 +France/IDF-HMN-22122190564/2022,XBB.2.7 +France/IDF-HMN-22122190570/2022,XBB.2.7 +France/IDF-HMN-22122190572/2022,XBB.2.7 +France/IDF-HMN-22122220240/2022,XBB.2.7 +France/IDF-HMN-22122190085/2022,XBB.2.7 +India/KA-RFNB-18889/2022,XBB.2.7 +India/MH-ICMR-NIV-INSACOG-G-12908/2022,XBB.2.7 +India/KA-BMCRI-1157/2023,XBB.2.7 +Oman/72213071/2022,XBB.2.7 +USA/CA-CDC-LC0973077/2022,XBB.2.7 +India/KA-ICMR-VRDL-MYS-24072/2022,XBB.2.7 +Australia/SA482185/2022,XBB.2.7 +USA/CA-CDC-STM-MDQBRQ36W/2022,XBB.2.7 +Japan/IC-15065/2022,XBB.2.7 +Israel/SMC-7108637/2022,XBB.2.7 +India/KA-20464_S114_R1_001/2022,XBB.2.7 +India/KA-ICMR-VRDL-MYS-25544/2022,XBB.2.7 +India/KA-ICMR-VRDL-MYS-24781/2022,XBB.2.7 +India/TN-CDFD-N-244/2022,XBB.2.7 +England/PHEP-YYGYC9X/2022,XBB.2.7 +USA/ME-HETL-J17733/2022,XBB.2.7 +USA/ME-HETL-J17690/2022,XBB.2.7 +USA/ME-HETL-J17801/2022,XBB.2.7 +USA/ME-HETL-J17770/2022,XBB.2.7 +USA/ME-HETL-J17795/2022,XBB.2.7 +USA/FL-CDC-LC0980489/2023,XBB.2.7