diff --git a/lineage_notes.txt b/lineage_notes.txt index 0ba3dbd5..1e34565e 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1063,6 +1063,7 @@ KR.1.2 Alias of B.1.1.529.2.86.1.1.1.5.1.2, S:R683Q KR.1.3 Alias of B.1.1.529.2.86.1.1.1.5.1.3, S:K304Q, S:S60P, Philippines KR.3 Alias of B.1.1.529.2.86.1.1.1.5.3, S:F456L (22930A), from sars-cov-2-variants/lineage-proposals#1253 KR.4 Alias of B.1.1.529.2.86.1.1.1.5.4, S:Q218E +KR.4.1 Alias of B.1.1.529.2.86.1.1.1.5.4.1, S:F456L (22928C), S:K478T, South Africa KR.5 Alias of B.1.1.529.2.86.1.1.1.5.5, ORF1a:L642F, ORF1a:T2087I, Brazil JN.1.1.6 Alias of B.1.1.529.2.86.1.1.1.6, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 KZ.1 Alias of B.1.1.529.2.86.1.1.1.6.1, ORF1b:V1092F @@ -1267,6 +1268,7 @@ KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L (T22928C), from sars-cov-2-vari KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1.1, S:T22N, Singapore/Taiwan/Canada, from sars-cov-2-variants/lineage-proposals#1565 KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.1.2, S:T678I, Russia KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.1.3, S:V642A, Dominican Republic +KS.1.4 Alias of B.1.1.529.2.86.1.1.13.1.1.4, C22414T, S:R237K JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador, from sars-cov-2-variants/lineage-proposals#1253 diff --git a/lineages.csv b/lineages.csv index 521b3788..ccf971ed 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2551776,8 +2551776,6 @@ USA/NY-SUNYQB-X9455/2024,KR.3 USA/NY-SUNYQB-X9463/2024,KR.3 USA/VA-CAV_VAS3N_00020660_01/2024,KR.4 USA/VA-CAV_VAS3N_00020906_01/2024,KR.4 -USA/NJ-GBW-GKISBBBC51400/2024,KR.4 -USA/NJ-GBW-GKPLAAAA26214/2024,KR.4 Brazil/TO-FIOCRUZ-1252/2024,KR.5 Brazil/TO-FIOCRUZ-1262/2024,KR.5 Brazil/GO-FIOCRUZ-1516/2024,KR.5 @@ -2556893,7 +2556891,6 @@ USA/NY-NYULH-19336/2024,LT.1 Canada/ON-PHL-202407165-v2/2024,LT.1 Canada/ON-PHL-202407166-v2/2024,LT.1 Canada/ON-PHL-202407190-v2/2024,LT.1 -USA/NJ-CDC-LC1104987/2024,KR.4 CHN/GYCDC-CX2024036/2024,JN.1.1.9 Sichuan/GYCDC-CX034/2024,JN.1.1.9 CHN/GYCDC-CX2024034/2024,JN.1.1.9 @@ -2563923,23 +2563920,6 @@ USA/VA-CDC-LC1108623/2024,KP.2.14 USA/NC-1085-10705/2024,KP.2.14 USA/NC-1085-10742/2024,KP.2.14 USA/NC-CDC-LC1108773/2024,KP.2.14 -USA/VA-GBW-GKISBBBC92787/2024,KR.4 -USA/VA-GBW-GKISBBBC14689/2024,KR.4 -USA/VA-GBW-GKPLAAAA21099/2024,KR.4 -USA/NE-NM_L378102384/2024,KR.4 -SouthAfrica/NICD-N57951/2024,KR.4 -SouthAfrica/NICD-N57954/2024,KR.4 -Botswana/R240B17_BHP_ILI-24-093/2024,KR.4 -SouthAfrica/NICD-R05134/2024,KR.4 -SouthAfrica/NICD-N58023/2024,KR.4 -USA/OH-ODH-SC4032106/2024,KR.4 -USA/OH-ODH-SC4032117/2024,KR.4 -SouthAfrica/NICD-N57909/2024,KR.4 -SouthAfrica/NICD-N57958/2024,KR.4 -SouthAfrica/NICD-N57963/2024,KR.4 -SouthAfrica/NICD-N57966/2024,KR.4 -SouthAfrica/NICD-N58004/2024,KR.4 -SouthAfrica/NICD-N58005/2024,KR.4 Ireland/D-BH-770025240/2024,KR.1.3 Wales/CLIMB-CM7YKX6B/2024,KR.1.3 USA/CA-CDPH-500138426/2024,KR.1.3 @@ -2568921,3 +2568901,24 @@ USA/CA-GBW-GKISBBBB36125/2024,KP.2.26 USA/CA-GBW-GKPLAAAA19564/2024,KP.2.26 USA/WA-GBW-GKISBBBC08874/2024,KP.2.26 USA/CA-GBW-GKISBBBD35113/2024,KP.2.26 +USA/VA-GBW-GKISBBBC92787/2024,KR.4.1 +USA/VA-GBW-GKISBBBC14689/2024,KR.4.1 +USA/VA-GBW-GKPLAAAA21099/2024,KR.4.1 +USA/NE-NM_L378102384/2024,KR.4.1 +USA/NJ-GBW-GKPLAAAA26214/2024,KR.4.1 +USA/NJ-GBW-GKISBBBC51400/2024,KR.4.1 +SouthAfrica/NICD-N57951/2024,KR.4.1 +SouthAfrica/NICD-N57954/2024,KR.4.1 +Botswana/R240B17_BHP_ILI-24-093/2024,KR.4.1 +SouthAfrica/NICD-R05134/2024,KR.4.1 +SouthAfrica/NICD-N58023/2024,KR.4.1 +USA/CO-CDPHE-42068940/2024,KR.4.1 +USA/NJ-CDC-LC1104987/2024,KR.4.1 +USA/OH-ODH-SC4032106/2024,KR.4.1 +USA/OH-ODH-SC4032117/2024,KR.4.1 +SouthAfrica/NICD-N57909/2024,KR.4.1 +SouthAfrica/NICD-N57958/2024,KR.4.1 +SouthAfrica/NICD-N57963/2024,KR.4.1 +SouthAfrica/NICD-N57966/2024,KR.4.1 +SouthAfrica/NICD-N58004/2024,KR.4.1 +SouthAfrica/NICD-N58005/2024,KR.4.1