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issue-milestone-collector.yml
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name: Collect Issue-Milestones
on:
workflow_dispatch:
schedule:
- cron: '0 3 * * *'
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
SCRIPT_NAME: Issue Milestone Collector
SCRIPT_DIR: scripts/issue-milestone-collector
ALIAS_MAPPING_JSON: pango_designation/alias_key.json
DATA_DIR: data
STREAM_NAME: github-api-milestones
STREAM_DIR: github-artifacts/api-payload
MAPPING_NAME: mappings
MAPPING_DIR: github-artifacts/mappings
COMMIT_MESSAGE: Update via Issue Milestone Collector
COMMIT_AUTHOR: Issue Milestone Collector
COMMIT_AUTHOR_EMAIL: "[email protected]"
concurrency:
group: single-workflow
cancel-in-progress: true
jobs:
script-setup:
name: Script Setup
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 1
ref: master
- name: Create Initial Artifact Files
run: |
mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR
touch $SCRIPT_DIR/{$STREAM_DIR,$MAPPING_DIR}/{cov-lineages_pango-designation,sars-cov-2-variants_lineage-proposals}.json
- name: Upload Stream Artifacts
uses: actions/upload-artifact@v3
with:
name: ${{ env.STREAM_NAME }}
path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }}
- name: Upload Mapping Artifacts
uses: actions/upload-artifact@v3
with:
name: ${{ env.MAPPING_NAME }}
path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }}
github-api-request:
name: GitHub API Request
runs-on: ubuntu-latest
needs: script-setup
concurrency: graphql
strategy:
fail-fast: false
matrix:
owner: [cov-lineages, sars-cov-2-variants]
include:
- repository: pango-designation
owner: cov-lineages
- repository: lineage-proposals
owner: sars-cov-2-variants
steps:
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 1
ref: master
- name: Ensure Directory Structure
run: |
mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR
- name: Download Stream Artifacts
uses: actions/download-artifact@v3
with:
name: ${{ env.STREAM_NAME }}
path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }}
- name: Download Mappings Artifacts
uses: actions/download-artifact@v3
with:
name: ${{ env.MAPPING_NAME }}
path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }}
- name: GitHub CLI GraphQL Request
run: |
cd $SCRIPT_DIR/$STREAM_DIR
gh api graphql \
--paginate \
--cache "1h" \
--header "Accept: application/vnd.github+json" \
--header "X-GitHub-Api-Version: 2022-11-28" \
--field owner=${{ matrix.owner }} \
--field repository=${{ matrix.repository }} \
--raw-field query='
query($owner: String!, $repository: String!, $endCursor: String) {
repository(owner: $owner, name: $repository) {
nameWithOwner
milestones(first:100, after: $endCursor) {
pageInfo {
hasNextPage
endCursor
}
nodes {
number
title
progressPercentage
issues(first: 10) {
nodes {
number,
labels(first: 10) {
nodes {
name
}
},
state,
stateReason
}
}
}
}
}
}' | jq '
if (. | has("errors"))
then error("GitHub API Error: \(.errors)")
else . end' \
> ${{ matrix.owner }}_${{ matrix.repository }}.json
echo "Request Finished"
- name: Post-process JSON Stream
run: |
# https://jqplay.org/s/UXZ31kBi_UE All
# https://jqplay.org/s/p1WYXibKnyy Lookup Test
jq --null-input \
'def lookup(KEY):
.[KEY] // error("MAPPING ERROR: \(KEY) does not exist within the mapper\nMAPPER:\n\(.)");
[input | to_entries[] | if (.key == "A" or .key == "B" or (.key | startswith("X"))) then .value = .key else . end]
| sort_by(.key) | from_entries as $mapper |
[inputs | .data.repository
| .nameWithOwner as $repo
| .milestones.nodes
| map(select(
((.progressPercentage == 100) or ((.progressPercentage != 100) and (.issues.nodes[].labels.nodes[].name | contains("designated"))))
and (.title | contains("withdrawn") | not)
and (.issues.nodes[]))
| (.title | splits(",? +|,")) as $pango
| {
($pango | sub("^[A-Z]+"; $mapper | lookup($pango | split(".")[0]))):
[ {pango: $pango}
+ { $repo, milestone: .number }
+ (.issues.nodes[] |
{ issue: .number, labels: ([.labels.nodes[].name] | join(", ")), state: .state, reason: .stateReason })
]
}
) | add
] | add ' \
$ALIAS_MAPPING_JSON $SCRIPT_DIR/$STREAM_DIR/${{ matrix.owner }}_${{ matrix.repository }}.json \
> $SCRIPT_DIR/$MAPPING_DIR/${{ matrix.owner }}_${{ matrix.repository }}.json
echo "Request Finished"
- name: Upload Stream Artifacts
uses: actions/upload-artifact@v3
with:
name: ${{ env.STREAM_NAME }}
path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }}
- name: Upload Mapping Artifacts
uses: actions/upload-artifact@v3
with:
name: ${{ env.MAPPING_NAME }}
path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }}
merge-mappings:
runs-on: ubuntu-latest
needs: github-api-request
steps:
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 1
ref: master
- name: Ensure Directory Structure
run: |
mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR $SCRIPT_DIR/$DATA_DIR
# - name: Download Stream Artifacts
# uses: actions/download-artifact@v3
# with:
# name: ${{ env.STREAM_NAME }}
# path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }}
- name: Download Mapping Artifacts
uses: actions/download-artifact@v3
with:
name: ${{ env.MAPPING_NAME }}
path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }}
- name: Post-process JSON Mappings
run: |
cd $SCRIPT_DIR
# https://jqplay.org/s/hMplWeL4VC5
jq --null-input \
'[inputs | to_entries | sort] | add
| map(.value[] + {"unaliased": .key})
| group_by(.unaliased) | add | unique | sort_by(.repo, .issue)
| group_by(.unaliased)
| map({(.[].unaliased) : [.[]]}) | add' \
$MAPPING_DIR/*.json \
> $DATA_DIR/mappings.json
- name: Create TSV
run: |
cd $SCRIPT_DIR
# https://jqplay.org/s/wZi2JJnFp-i
jq --null-input --raw-output \
'[inputs | to_entries] | add | sort
| map(.value[])
| [.[] | with_entries( .key |= ascii_upcase ) ]
| (.[0] | keys_unsorted | @tsv), (.[] | . | map(.) | @tsv)' \
$DATA_DIR/mappings.json \
> $DATA_DIR/mappings.tsv
- name: Update README.md
run: |
cd $SCRIPT_DIR
# https://jqplay.org/s/yamLR8O_qfT
# https://jqplay.org/s/JSwD4q_mlLI With unaliased
# https://jqplay.org/s/vk554kUteJ4 Functions Test
markdown_table=$(jq --null-input --raw-output \
'def chunk(N):
if . | length <= N
then [.]
else ([.[0:N]] + (.[N:] | chunk(N)))
end;
def split_hierarchy(N):
. | split(".") as $split
| $split[0] as $base
| $split[1:] as $hierarchy
| [$base] + if ($split | length > 1) then ([$hierarchy | chunk(N) | map(join(".")) | join(" .")]) else [] end | join(".");
[inputs | to_entries] | add | sort
| map(.value[] + {"lineage": (.key)})
| map_values(.repo as $repo | .
+ {"pango": ("`" + .pango + "`")}
+ {"unaliased_split": ("`" + (.unaliased | split_hierarchy(9)) + "`")}
+ {"source": (if $repo == "cov-lineages/pango-designation" then "main" else "2nd" end)}
+ {"labels": .labels | split(", ") |
(if $repo == "cov-lineages/pango-designation"
then map("https://github.com/\($repo)/labels/\(. | @uri | gsub("\\."; "%2E"))") | join(" ")
else map("[\(.)](https://github.com/\($repo)/labels/\(. | @uri | gsub("\\."; "%2E")))") | join(", ")
end)
}
+ {"milestone": ("[⚑ \(.milestone)](https://github.com/\($repo)/milestone/\(.milestone)?closed=1)")}
+ {"issue": ("[#\(.issue)\(if .reason == "REOPENED" then " 🔵" elif (.reason | not) then " 🟠" elif .reason == "NOT_PLANNED" then " 🔴" else "" end)](https://github.com/\($repo)/issues/\(.issue))")}
) as $data
| [["PANGO", "UNALIASED PANGO", "MILESTONE", "ISSUE", "LABELS", "REPO"] | join(" | ")]
+ [[":---", ":---", ":---:", ":---:", ":---", ":--"] | join(" | ")]
+ ($data | map(.pango + " | " + .unaliased_split + " | " + .milestone + " | " + .issue + " | " + .labels + " | " + .source)) | .[]' \
$DATA_DIR/mappings.json)
echo -e "$markdown_table" > README.md
- name: Commit and Push
run: |
gitStatus=$(git status --porcelain)
# Check if empty
if [ -z "$gitStatus" ]; then
echo "No changes to commit"
else
echo "Changes detected:"
echo "$gitStatus"
echo
echo "committing..."
git config user.name "$COMMIT_AUTHOR"
git config user.email "$COMMIT_AUTHOR_EMAIL"
git add --all
git commit -a -m "$COMMIT_MESSAGE"
git push
fi