From 388188c0d3f2ffd2a125974920986701e639bd9f Mon Sep 17 00:00:00 2001 From: Conor Heffron Date: Mon, 15 Apr 2024 19:50:27 +0100 Subject: [PATCH 1/2] Update ReadMe.md --- ReadMe.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/ReadMe.md b/ReadMe.md index 713f794..47f2443 100644 --- a/ReadMe.md +++ b/ReadMe.md @@ -1,3 +1,5 @@ +![Proof HTML](https://github.com/conorheffron/gene-expr/actions/workflows/proof-html.yml/badge.svg) + ### Summary - In this report, I will analyse a publicly available dataset based on clinical breast cancer data. Breast cancer is the most diagnosed cancer in women. There are several subtypes of diseases characterized by different genetic drivers for cancer risk and tumour growth. The human epidermal growth factor receptor 2 amplified (HER2: ERBB2 / ERBB2IP) breast cancer is one of the most aggressive subtypes. In addition, I will investigate HER3 (ERBB3), HER4 (ERBB4), PIK3C2B, MDM4, LRRN2, NFASC, KLHDC8A, and CDK18 gene mutations. Although there are targeted therapies that have been developed to treat these cancer cases, the response rate ranges from 40% - 50%. I will download, decompress, clean and process the TCGA RNASeq data for breast cancer from cbioportal and identify the differentially expressed genes between ERBB2 / ERBB2IP, ERBB3, ERBB4, PIK3C2B, MDM4, LRRN2, NFASC, KLHDC8A, and CDK18 cancer tumours. From 8a4e92319f138a1499c321db4cd7d04e5ac4bdfd Mon Sep 17 00:00:00 2001 From: Conor Heffron Date: Mon, 15 Apr 2024 19:52:27 +0100 Subject: [PATCH 2/2] Create proof-html.yml --- .github/workflows/proof-html.yml | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 .github/workflows/proof-html.yml diff --git a/.github/workflows/proof-html.yml b/.github/workflows/proof-html.yml new file mode 100644 index 0000000..be7dac3 --- /dev/null +++ b/.github/workflows/proof-html.yml @@ -0,0 +1,11 @@ +name: Proof HTML +on: + push: + workflow_dispatch: +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: anishathalye/proof-html@v1.1.0 + with: + directory: ./