setup.py

import os
import platform
from glob import glob

import numpy
from Cython.Distutils import build_ext
from setuptools import setup
from setuptools.extension import Extension


def _get_version():
    with open("ms2pip/__init__.py") as f:
        for line in f:
            if line.startswith("__version__"):
                return line.split("=")[1].strip().strip('"').strip("'")


to_remove = [
    "ms2pip/_cython_modules/ms2pip_pyx.c*",
    "ms2pip/_cython_modules/ms2pip_pyx.so",
]
_ = [[os.remove(f) for f in glob(pat)] for pat in to_remove]

# Large machine-written C model files require optimization to be disabled
compile_args = {
    "Linux": [
        "-O0",
        "-fno-var-tracking",
        "-Wno-unused-result",
        "-Wno-cpp",
        "-Wno-unused-function",
    ],
    "Darwin": [
        "-O0",
    ],
    "Windows": [
        "/Od",
        "/DEBUG",
        "/GL-",
        "/bigobj",
        "/wd4244",
    ],
}

extensions = [
    Extension(
        "ms2pip._cython_modules.ms2pip_pyx",
        sources=["ms2pip/_cython_modules/ms2pip_pyx.pyx"] + glob("ms2pip/_models_c/*/*.c"),
        extra_compile_args=compile_args[platform.system()],
    )
]

setup(
    version=_get_version(),
    ext_modules=extensions,
    include_dirs=[numpy.get_include()],
    cmdclass={"build_ext": build_ext},
)