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Supporting Modified Alphabets #18

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k-forghani opened this issue Sep 7, 2023 · 1 comment
Open

Supporting Modified Alphabets #18

k-forghani opened this issue Sep 7, 2023 · 1 comment

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@k-forghani
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Dear developers,
Can VeryFastTree handle a modified alphabet rather than either nucleotide or amino acid alphabets?
If yes, how can it be performed?
Thanks in advance.
@cesarpomar
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VeryFastTree is built upon the algorithms of FastTree, designed for protein and nucleotide sequences. Introducing a new alphabet would indeed necessitate significant changes, depending on the nature of the modifications you have in mind. Nevertheless, if you have a proposal for such a modification, we are open to discussing its feasibility and potential implementation. Please provide more details on the specific modifications you're considering, and we can explore the possibilities further.

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@cesarpomar @k-forghani