pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="http://maven.apache.org/POM/4.0.0"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>com.github.sparkbwa</groupId>
    <artifactId>SparkBWA</artifactId>
    <version>0.2</version>

    <repositories>
        <repository>
            <id>128</id>
            <name>mvn.128.no</name>
            <url>https://mvn.128.no/maven2</url>
        </repository>
    </repositories>

    <dependencies>
        <!-- https://mvnrepository.com/artifact/org.apache.spark/spark-core_2.11 -->
        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-core_2.11</artifactId>
            <version>[2.3.3,)</version>
        </dependency>
        <dependency>
            <groupId>cz.adamh.utils</groupId>
            <artifactId>native-utils</artifactId>
            <version>1.0-SNAPSHOT</version>
        </dependency>
    </dependencies>

    <properties>
        <my.native.path>./src/main/native/</my.native.path>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    </properties>

    <build>
        <plugins>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>exec-maven-plugin</artifactId>
                <version>1.5.0</version>
                <executions>
                    <execution>
                        <id>makeBwa</id>
                        <phase>compile</phase>
                        <goals>
                            <goal>exec</goal>
                        </goals>
                        <configuration>
                            <executable>make</executable>
                            <arguments>
                                <argument>-C</argument>
                                <argument>${my.native.path}</argument>
                            </arguments>
                        </configuration>
                    </execution>

                    <execution>
                        <id>makeBwaClean</id>
                        <phase>clean</phase>
                        <goals>
                           <goal>exec</goal>
                        </goals>
                        <configuration>
                            <executable>make</executable>
                            <arguments>
                                <argument>clean</argument>
                                <argument>-C</argument>
                                <argument>${my.native.path}</argument>
                            </arguments>
                        </configuration>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-shade-plugin</artifactId>
                <version>2.4.3</version>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>shade</goal>
                        </goals>
                        <configuration>
                            <artifactSet>
                                <includes>
                                    <include>cz.adamh.utils:native-utils</include>
                                </includes>
                                <excludes>
                                    <exclude>META-INF/*.DSA</exclude>
                                    <exclude>META-INF/*.RSA</exclude>
                                    <exclude>META-INF/*.SF</exclude>
                                </excludes>
                            </artifactSet>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>


</project>