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Add a new CLI parameter which allows the user to force cellxgene to assume a particular approximate X data distribution, for the purposes of calculating differential expression statistics. See also #2211
bkmartinjr
changed the title
Desktop fix to reporting log fold change correctly
a CLI param to control heuristic determination of approximate X data distribution
Jul 16, 2021
Add a new CLI parameter which allows the user to force cellxgene to assume a particular approximate X data distribution, for the purposes of calculating differential expression statistics. See also #2211
Parameter name: --X-approx-distribution
Values:
Example which forces cellxgene to assume the data is not logged (ie, exponentially distributed, and will be logged before computing diffexp):
Example which forces cellxgene to assume the data is normally distributed, and will not be logged before calculating differential expression:
The 'auto' value is default and will apply a heuristic to determine the approximate distribution of X values.
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