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Seems like when the batch input mode is specified from the config file, vina (as installed from conda, AutoDock Vina 58016d8-mod) does not recognize the batch option and tries to read the batch regular expression (input_dir/*.pdbqt) as a file, resulting in an error. I can always specify the batch option from the command line, so it is not a big deal, but still might be worth check in.
Seems like when the batch input mode is specified from the config file, vina (as installed from conda, AutoDock Vina 58016d8-mod) does not recognize the batch option and tries to read the batch regular expression (input_dir/*.pdbqt) as a file, resulting in an error. I can always specify the batch option from the command line, so it is not a big deal, but still might be worth check in.
------ Command --------
vina --config configFile.txt
------ Config file --------
batch = ./tmp/*.pdbqt
scoring = ad4
maps = 1s63_tz
center_x = 11.148385089189023
center_y = 125.14929904879297
center_z = 1.9764267131155862
size_x = 70.0
size_y = 70.0
size_z = 70.0
dir = .
cpu = 4
exhaustiveness = 3
max_evals = 0
num_modes = 2
min_rmsd = 2.0
verbosity = 2
----- Error ------
Scoring function : ad4
Exhaustiveness: 3
CPU: 4
Verbosity: 2
Reading AD4.2 maps ... done.
Error: could not open "./tmp/*.pdbqt" for reading.
----- Alternative ------
Remove batch line from config file
Command: vina --batch ./tmp/.pdbqt --config configFile.txt
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