Skip to content
Codecov / codecov/patch succeeded Sep 20, 2023 in 0s

68.950% of diff hit (target 86.362%)

View this Pull Request on Codecov

68.950% of diff hit (target 86.362%)

Annotations

Check warning on line 616 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/AssemblyResultSet.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/AssemblyResultSet.java#L616

Added line #L616 was not covered by tests

Check warning on line 97 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L97

Added line #L97 was not covered by tests

Check warning on line 119 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L118-L119

Added lines #L118 - L119 were not covered by tests

Check warning on line 130 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L130

Added line #L130 was not covered by tests

Check warning on line 132 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L132

Added line #L132 was not covered by tests

Check warning on line 136 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L135-L136

Added lines #L135 - L136 were not covered by tests

Check warning on line 139 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L139

Added line #L139 was not covered by tests

Check warning on line 147 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L144-L147

Added lines #L144 - L147 were not covered by tests

Check warning on line 154 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L153-L154

Added lines #L153 - L154 were not covered by tests

Check warning on line 161 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L158-L161

Added lines #L158 - L161 were not covered by tests

Check warning on line 165 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L164-L165

Added lines #L164 - L165 were not covered by tests

Check warning on line 173 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L169-L173

Added lines #L169 - L173 were not covered by tests

Check warning on line 177 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L177

Added line #L177 was not covered by tests

Check warning on line 187 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L187

Added line #L187 was not covered by tests

Check warning on line 392 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L392

Added line #L392 was not covered by tests

Check warning on line 779 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L779

Added line #L779 was not covered by tests

Check warning on line 825 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L824-L825

Added lines #L824 - L825 were not covered by tests

Check warning on line 827 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L827

Added line #L827 was not covered by tests

Check warning on line 158 in src/main/java/org/broadinstitute/hellbender/utils/haplotype/PartiallyDeterminedHaplotype.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/haplotype/PartiallyDeterminedHaplotype.java#L158

Added line #L158 was not covered by tests

Check warning on line 163 in src/main/java/org/broadinstitute/hellbender/utils/haplotype/PartiallyDeterminedHaplotype.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/utils/haplotype/PartiallyDeterminedHaplotype.java#L163

Added line #L163 was not covered by tests

Check warning on line 2171 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L2171

Added line #L2171 was not covered by tests

Check warning on line 2174 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L2173-L2174

Added lines #L2173 - L2174 were not covered by tests

Check warning on line 2177 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L2177

Added line #L2177 was not covered by tests

Check warning on line 2182 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L2182

Added line #L2182 was not covered by tests

Check warning on line 2201 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L2200-L2201

Added lines #L2200 - L2201 were not covered by tests