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Fixed a bug in pileup mode relating to number of haplotypes #8489

Merged
merged 10 commits into from
Aug 28, 2023
Merged

Fixed a bug in pileup mode relating to number of haplotypes #8489

merged 10 commits into from
Aug 28, 2023

Commits on Aug 18, 2023

  1. Modified pileup assembly code to be more deterministic.

    @jonn-smith
    jonn-smith committed Aug 18, 2023
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  2. Added in some debug log statements.

    @jonn-smith
    jonn-smith committed Aug 18, 2023
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  3. Added debugging code - remember to remove this later.

    @jonn-smith
    jonn-smith committed Aug 18, 2023
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Commits on Aug 21, 2023

  1. Added another debug log statement.

    @jonn-smith
    jonn-smith committed Aug 21, 2023
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  2. Removed debug logging.

    @jonn-smith
    jonn-smith committed Aug 21, 2023
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Commits on Aug 22, 2023

  1. Fixed tests so they respect the number of haplotypes to be returned.

    @jonn-smith
    jonn-smith committed Aug 22, 2023
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  2. Updated expected results for some pileup mode integration tests.

    @jonn-smith
    jonn-smith committed Aug 22, 2023
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Commits on Aug 23, 2023

  1. Addressing reviewer comments.

    @jonn-smith
    jonn-smith committed Aug 23, 2023
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Commits on Aug 28, 2023

  1. Fixing minor bug in haplotype sorting.

    @jonn-smith
    jonn-smith committed Aug 28, 2023
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  2. Updating some integration tests again with new comparator results.

    @jonn-smith
    jonn-smith committed Aug 28, 2023
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