Build and Test GATK 4

Fixed a bug in pileup mode relating to number of haplotypes #2985

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Triggered via pull request August 28, 2023 14:03

jonn-smith

synchronize #8489

jts_haplotypecaller_pileup_num_haplotypes_fix

Status Failure

Total duration 1h 25m 19s

Artifacts 8

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gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

1 error

Java 17.0.6+10 test on docker variantcalling

Process completed with exit code 1.

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.11 GB
test-results-17.0.6+10-cloud Expired	294 KB
test-results-17.0.6+10-integration Expired	3.45 MB
test-results-17.0.6+10-unit Expired	155 MB
test-results-docker-17.0.6+10-conda Expired	288 KB
test-results-docker-17.0.6+10-integration Expired	3.37 MB
test-results-docker-17.0.6+10-unit Expired	153 MB
test-results-docker-17.0.6+10-variantcalling Expired	443 KB