Error after updating RMath, PDMat, Distributions, etc.

[goedman]

Hi Brian,

Noticed below error after a recent update.

Regards,
Rob

julia> Pkg.installed("PDMats")
v"0.4.2"

julia> Pkg.installed("Distributions")
v"0.10.0"

julia> Pkg.installed("RMath")
v"0.1.2"

julia> Pkg.installed("DataFrames")
v"0.7.6"

julia> versioninfo()
Julia Version 0.4.6
Commit 2e358ce (2016-06-19 17:16 UTC)
Platform Info:
System: Darwin (x86_64-apple-darwin13.4.0)
CPU: Intel(R) Core(TM) i7-4980HQ CPU @ 2.80GHz
WORD_SIZE: 64
BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell)
LAPACK: libopenblas64_
LIBM: libopenlibm
LLVM: libLLVM-3.3

julia> Pkg.installed("Mamba")
v"0.9.1"

julia> Pkg.test("Mamba")
INFO: Testing Mamba
Running tests:

Testing ../doc/tutorial/line.jl

ERROR: LoadError: LoadError: LoadError: LoadError: TypeError: MvNormal: in T, expected T<:Real, got Type{Mamba.PDMats2.PBDiagMat}
in include at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in include_from_node1 at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in include at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in include_from_node1 at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in require at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in include at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in include_from_node1 at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
[inlined code] from /Users/rob/.julia/v0.4/Mamba/test/utils.jl:5
in anonymous at no file:0
in include at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in include_from_node1 at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in process_options at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in _start at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
while loading /Users/rob/.julia/v0.4/Mamba/src/distributions/extensions.jl, in expression starting on line 18
while loading /Users/rob/.julia/v0.4/Mamba/src/Mamba.jl, in expression starting on line 191
while loading /Users/rob/.julia/v0.4/Mamba/test/../doc/tutorial/line.jl, in expression starting on line 1
while loading /Users/rob/.julia/v0.4/Mamba/test/runtests.jl, in expression starting on line 32
====================================================[ ERROR: Mamba ]====================================================

failed process: Process(/Applications/Julia-0.4.6.app/Contents/Resources/julia/bin/julia --check-bounds=yes --code-coverage=none --color=yes /Users/rob/.julia/v0.4/Mamba/test/runtests.jl, ProcessExited(1)) [1]

ERROR: Mamba had test errors
in error at /Applications/Julia-0.4.6.app/Contents/Resources/julia/lib/julia/sys.dylib
in test at pkg/entry.jl:803
in anonymous at pkg/dir.jl:31
in cd at file.jl:22
in cd at pkg/dir.jl:31
in test at pkg.jl:71

julia>

[bdeonovic]

Might be related to: JuliaStats/Distributions.jl#513 try upgrading to StatsFuns 0.2.2

[brian-j-smith]

Looks like it is the Distributions 0.10.0 update. I just opened a pull request at JuliaLang/METADATA.jl#5655 for an update to Mamba that fixes the issue.

[goedman]

Fixed! Thanks Brian.