Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Question: what is the SAM_RGAUX flag? #13

Closed
nh13 opened this issue Mar 10, 2018 · 1 comment
Closed

Question: what is the SAM_RGAUX flag? #13

nh13 opened this issue Mar 10, 2018 · 1 comment

Comments

@nh13
Copy link

nh13 commented Mar 10, 2018

I don't see it in the SAM spec. Is it related to long reads (cigars)? samtools/hts-specs#40
@brentp
Copy link
Owner

brentp commented Mar 12, 2018

I would guess that it lets the user decide if they want to decode the read-group aux fields from from CRAM.

I am closing this as the API for htslib is quite large, the goal of hts-nim is to allow access to all of it for savvy users while providing a simple API for the most-used parts.

@brentp brentp closed this as completed Mar 12, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@brentp @nh13