diff --git a/duphold.nimble b/duphold.nimble index 77e0d92..9cb507e 100644 --- a/duphold.nimble +++ b/duphold.nimble @@ -18,7 +18,7 @@ license = "MIT" # Dependencies -requires "hts >= 0.3.0", "genoiser >= 0.2.2", "docopt >= 0.6.8" +requires "hts >= 0.3.8", "genoiser >= 0.2.7", "docopt >= 0.6.8" srcDir = "src" installExt = @["nim"] diff --git a/src/duphold.nim b/src/duphold.nim index c5653cc..4f71c78 100644 --- a/src/duphold.nim +++ b/src/duphold.nim @@ -519,7 +519,9 @@ proc annotate*(snps:snpset, variant:Variant, sample_i:int) = if len(snps.starts) == 0: return # dont annotate BNDs (or INVs) - if ':' in variant.ALT[0] or variant.ALT[0] == "": return + var alt = variant.ALT[0] + if (':' in alt and ('[' in alt or ']' in alt)) or alt == "": return + var dhgt = newSeq[int32](5 * variant.vcf.n_samples) get_or_empty(variant, "DHGT", dhgt, 5) dhgt[5*sample_i] = 0 diff --git a/src/dupholdpkg/version.nim b/src/dupholdpkg/version.nim index 69f392a..8a62ef2 100644 --- a/src/dupholdpkg/version.nim +++ b/src/dupholdpkg/version.nim @@ -1 +1 @@ -const dupholdVersion* = "0.2.1" +const dupholdVersion* = "0.2.2"