packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2023},
  url = {https://www.R-project.org/},
}
@Manual{R-bayesplot,
  title = {{b}ayesplot: Plotting for Bayesian Models},
  author = {Jonah Gabry and Tristan Mahr},
  year = {2024},
  note = {R package version 1.11.1},
  url = {https://mc-stan.org/bayesplot/},
}
@Manual{R-bookdown,
  title = {{b}ookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2024},
  note = {R package version 0.39},
  url = {https://github.com/rstudio/bookdown},
}
@Manual{R-brms,
  title = {{b}rms: Bayesian Regression Models using `Stan'},
  author = {Paul-Christian Bürkner},
  year = {2024},
  note = {R package version 2.21.0},
  url = {https://github.com/paul-buerkner/brms},
}
@Manual{R-citr,
  title = {{c}itr: RStudio Add-in to Insert Markdown Citations},
  author = {Frederik Aust},
  year = {2019},
  note = {R package version 0.3.2},
  url = {https://CRAN.R-project.org/package=citr}
}
@Manual{R-dplyr,
  title = {{d}plyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2023},
  note = {R package version 1.1.4},
  url = {https://dplyr.tidyverse.org},
}
@Manual{R-DT,
  title = {{DT}: A Wrapper of the JavaScript Library 'DataTables'},
  author = {Yihui Xie and Joe Cheng and Xianying Tan},
  year = {2019},
  note = {R package version 0.6},
  url = {https://CRAN.R-project.org/package=DT}
}
@Manual{R-extraDistr,
  title = {{e}xtraDistr: Additional Univariate and Multivariate Distributions},
  author = {Tymoteusz Wolodzko},
  year = {2023},
  note = {R package version 1.10.0},
  url = {https://github.com/twolodzko/extraDistr},
}
@Manual{R-gdtools,
  title = {{g}dtools: Utilities for Graphical Rendering},
  author = {David Gohel and Hadley Wickham and Lionel Henry and Jeroen Ooms},
  year = {2019},
  note = {R package version 0.2.1},
  url = {https://CRAN.R-project.org/package=gdtools}
}
@Manual{R-ggplot2,
  title = {{g}gplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus O. Wilke and Kara Woo and Hiroaki Yutani and Teun van den Brand},
  year = {2024},
  note = {R package version 3.5.1},
  url = {https://ggplot2.tidyverse.org},
}
@Manual{R-htmlwidgets,
  title = {{h}tmlwidgets: HTML Widgets for R},
  author = {Ramnath Vaidyanathan and Yihui Xie and J.J. Allaire and Joe Cheng and Kenton Russell},
  year = {2023},
  note = {R package version 1.6.4},
  url = {https://github.com/ramnathv/htmlwidgets},
}
@Manual{R-knitr,
  title = {{k}nitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
   year = {2024},
  note = {R package version 1.47},
  url = {https://yihui.org/knitr/},
}
@Manual{R-MASS,
  title = {{MASS}: Support Functions and Datasets for Venables and Ripley's {MASS}},
  author = {Brian D. Ripley},
  year = {2023},
  note = {R package version 7.3-60},
  url = {http://www.stats.ox.ac.uk/pub/MASS4/},
}
@Manual{R-miniUI,
  title = {{m}iniUI: Shiny UI Widgets for Small Screens},
  author = {Joe Cheng},
  year = {2018},
  note = {R package version 0.1.1.1},
  url = {https://CRAN.R-project.org/package=miniUI}
}
@Manual{R-purrr,
  title = {{p}urrr: Functional Programming Tools},
  author = {Hadley Wickham and Lionel Henry},
  year = {2023},
  note = {R package version 1.0.2},
  url = {https://purrr.tidyverse.org/},
}
@Manual{R-Rcpp,
  title = {Rcpp: Seamless R and C++ Integration},
  author = {Dirk Eddelbuettel and Romain Francois and J.J. Allaire and Kevin Ushey and Qiang Kou and Nathan Russell and Inaki Ucar and Douglas M. Bates and John Chambers},
  year = {2024},
  note = {R package version 1.0.12},
  url = {https://www.rcpp.org},
}
@Manual{R-readr,
  title = {{r}eadr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Romain Francois},
  year = {2018},
  note = {R package version 1.3.1},
  url = {https://CRAN.R-project.org/package=readr}
}
@Manual{R-rmarkdown,
  title = {{r}markdown: Dynamic Documents for R},
  author = {J.J. Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2024},
  note = {R package version 2.27},
  url = {https://github.com/rstudio/rmarkdown},
}
@Manual{R-rstan,
  title = {{r}stan: R Interface to Stan},
  author = {Jiqiang Guo and Jonah Gabry and Ben Goodrich and Andrew Johnson and Sebastian Weber and Hamada S. Badr},
  year = {2024},
  note = {R package version 2.35.0.9000},
  url = {https://mc-stan.org/rstan/},
}
@Manual{R-servr,
  title = {{s}ervr: A Simple HTTP Server to Serve Static Files or Dynamic Documents},
  author = {Yihui Xie},
  year = {2019},
  note = {R package version 0.15},
  url = {https://CRAN.R-project.org/package=servr}
}
@Manual{R-StanHeaders,
  title = {{StanHeaders}: C++ Header Files for Stan},
  author = {Ben Goodrich and Andrew Gelman and Bob Carpenter and Matthew D. Hoffman and Daniel Lee and Michael J. Betancourt and Marcus Brubaker and Jiqiang Guo and Peter Li and Allen Riddell and Marco Inacio and Mitzi Morris and Jeffrey Arnold and Rob Goedman and Brian Lau and Rob Trangucci and Jonah Gabry and Alp Kucukelbir and Robert Grant and Dustin Tran and Michael Malecki and Yuanjun Gao and Hamada S. Badr},
  year = {2024},
  note = {R package version 2.35.0.9000},
  url = {https://mc-stan.org/},
}
@Manual{R-webshot,
  title = {{w}ebshot: {T}ake Screenshots of Web Pages},
  author = {Winston Chang},
  year = {2018},
  note = {R package version 0.5.1},
  url = {https://CRAN.R-project.org/package=webshot}
}
@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
  year = {2024},
  note = {R package version 1.3.1},
  url = {https://tidyr.tidyverse.org},
}
@Article{R-RefManageR,
  author = {Mathew William McLean},
  title = {RefManageR: Import and Manage BibTeX and BibLaTeX References in R},
  journal = {The Journal of Open Source Software},
  year = {2017},
  doi = {10.21105/joss.00338}
}
@Manual{R-bibtex,
  title = {bibtex: Bibtex Parser},
  author = {Romain Francois},
  year = {2017},
  note = {R package version 0.4.2},
  url = {https://CRAN.R-project.org/package=bibtex}
}
@Manual{R-tictoc,
  title = {tictoc: Functions for Timing R Scripts, as Well as Implementations of
"Stack" and "StackList" Structures},
  author = {Sergei Izrailev},
  year = {2024},
  note = {R package version 1.2.1},
  url = {https://github.com/jabiru/tictoc},
}
@Manual{R-gridExtra,
  title = {gridExtra: Miscellaneous Functions for "Grid" Graphics},
  author = {Baptiste Auguie},
  year = {2017},
  note = {R package version 2.3},
  url = {https://CRAN.R-project.org/package=gridExtra}
}
@Manual{R-forcats,
  title = {{f}orcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 0.4.0},
  url = {https://CRAN.R-project.org/package=forcats}
}
@Article{R-hypr_a,
  title = {How to capitalize on a priori contrasts in linear (mixed) models: A tutorial},
  year = {2019},
  journal = {Journal of Memory and Language},
  arxiv = {1807.10451},
  doi = {10.1016/j.jml.2019.104038},
  volume = {110},
  author = {Daniel J. Schad and Shravan Vasishth and Sven Hohenstein and Reinhold Kliegl}
}
@Article{R-hypr_b,
  title = {hypr: An R package for hypothesis-driven contrast coding},
  year = {2020},
  journal = {The Journal of Open Source Software},
  doi = {10.21105/joss.02134},
  author = {Maximilian M. Rabe and Shravan Vasishth and Sven Hohenstein and Reinhold Kliegl and Daniel J. Schad}
}
@Manual{R-papaja,
  author = {Frederik Aust and Marius Barth},
  title = {{papaja}: {Create} {APA} manuscripts with {R Markdown}},
  year = {2020},
  note = {R package version 0.1.0.9942},
  url = {https://github.com/crsh/papaja}
}
@Manual{R-stringr,
  title = {{s}tringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr}
}
@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2020},
  note = {R package version 3.0.1},
  url = {https://CRAN.R-project.org/package=tibble}
}
@Article{R-tidyverse,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus O. Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686}
}
@Manual{R-barsurf,
  title = {barsurf: Heatmap-Related Plots and Smooth Multiband Color Interpolation},
  author = {Abby Spurdle},
  year = {2020},
  note = {R package version 0.5.0},
  url = {https://CRAN.R-project.org/package=barsurf}
}
@Manual{R-bivariate,
  title = {bivariate: Bivariate Probability Distributions},
  author = {Abby Spurdle},
  year = {2021},
  note = {R package version 0.7.0},
  url = {https://sites.google.com/site/spurdlea/r},
}
@Manual{R-intoo,
  title = {intoo: Minimal Language-Like Extensions},
  author = {Abby Spurdle and Emil Bode},
  year = {2020},
  note = {R package version 0.4.0},
  url = {https://CRAN.R-project.org/package=intoo}
}
@Manual{R-kableExtra,
  title = {kableExtra: Construct Complex Table with 'kable' and Pipe Syntax},
  author = {Hao Zhu},
  year = {2024},
  note = {R package version 1.4.0},
  url = {http://haozhu233.github.io/kableExtra/},
}
@Article{R-bridgesampling,
  title = {{bridgesampling}: An {R} Package for Estimating Normalizing Constants},
  author = {Quentin F. Gronau and Henrik Singmann and Eric-Jan Wagenmakers},
  journal = {Journal of Statistical Software},
  year = {2020},
  volume = {92},
  number = {10},
  pages = {1--29},
  doi = {10.18637/jss.v092.i10}
}
@Article{R-loo_b,
  title = {Using stacking to average {Bayesian} predictive distributions},
  author = {Yuling Yao and Aki Vehtari and Daniel P. Simpson and Andrew Gelman},
  year = {2017},
  journal = {Bayesian Analysis},
  doi = {10.1214/17-BA1091}
}
@Manual{R-SIN,
  title = {{SIN}: {A SIN}ful Approach to Selection of Gaussian Graphical Markov
Models},
  author = {Mathias Drton},
  year = {2013},
  note = {R package version 0.6},
  url = {https://CRAN.R-project.org/package=SIN}
}
@Manual{R-bcogsci,
  title = {{b}cogsci: {Data} and models for the book ``{A}n Introduction to Bayesian Data Analysis for Cognitive Science''},
  author = {Bruno Nicenboim and Daniel J. Schad and Shravan Vasishth},
  year = {2024},
  note = {R package version 0.0.0.9000},
}
@Manual{R-afex,
  title = {afex: {Analysis} of Factorial Experiments},
  author = {Henrik Singmann and Ben Bolker and Jake Westfall and Frederik Aust and Mattan S. Ben-Shachar},
  year = {2020},
  note = {R package version 0.28-0},
  url = {https://CRAN.R-project.org/package=afex}
}
@Article{R-lme4,
  title = {Fitting Linear Mixed-Effects Models Using {lme4}},
  author = {Douglas M. Bates and Martin M{\"a}chler and Ben Bolker and Steve Walker},
  journal = {Journal of Statistical Software},
  year = {2015},
  volume = {67},
  number = {1},
  pages = {1--48},
  doi = {10.18637/jss.v067.i01}
}
@Manual{R-Matrix,
  title = {Matrix: Sparse and Dense Matrix Classes and Methods},
  author = {Douglas M. Bates and Martin Maechler and Mikael Jagan},
  year = {2023},
  note = {R package version 1.6-1.1},
  url = {https://Matrix.R-forge.R-project.org},
}
@Manual{R-cowplot,
  title = {{c}owplot: Streamlined Plot Theme and Plot Annotations for 'ggplot2'},
  author = {Claus O. Wilke},
  year = {2024},
  note = {R package version 1.1.3},
  url = {https://wilkelab.org/cowplot/},
}
@Manual{R-pdftools,
  title = {{p}dftools: {T}ext Extraction, Rendering and Converting of PDF Documents},
  author = {Jeroen Ooms},
  year = {2023},
  note = {R package version 3.4.0},
  url = {https://docs.ropensci.org/pdftools/},
}
@Manual{R-remotes,
  title = {remotes: {R} Package Installation from Remote Repositories, Including
'GitHub'},
  author = {Jim Hester and Gábor Csárdi and Hadley Wickham and Winston Chang and Martin Morgan and Dan Tenenbaum},
  year = {2021},
  note = {R package version 2.4.0},
  url = {https://CRAN.R-project.org/package=remotes},
}
@Manual{R-cmdstanr,
  title = {{c}mdstanr: {R} Interface to `{CmdStan}'},
  author = {Jonah Gabry and Rok Češnovar and Andrew Johnson and Steve Bronder},
  year = {2024},
  note = {R package version 0.8.0},
  url = {https://mc-stan.org/cmdstanr/},
}
@Manual{R-texPreview,
  title = {texPreview: Compile and Preview Snippets of `LaTeX'},
  author = {Jonathan Sidi and Daniel Polhamus},
  year = {2020},
  note = {R package version 1.5},
  url = {https://CRAN.R-project.org/package=texPreview},
}
@Book{R-rootSolve,
  title = {A Practical Guide to Ecological Modelling. Using R as a Simulation Platform
},
  publisher = {Springer},
  year = {2009},
  author = {Karline Soetaert and Peter M.J. Herman},
  pages = {372},
  note = {ISBN 978-1-4020-8623-6},
}
@Manual{R-SHELF,
  title = {{SHELF}: Tools to Support the Sheffield Elicitation Framework},
  author = {Jeremy E. Oakley},
  year = {2024},
  note = {R package version 1.10.0},
  url = {https://github.com/OakleyJ/SHELF},
}
@Manual{R-SBC,
  title = {{SBC}: {Simulation} Based Calibration for rstan/cmdstanr models},
  author = {Shinyoung Kim and Hyunji Moon and Martin Modrák and Teemu Säilynoja},
  year = {2024},
  note = {R package version 0.3.0.9000},
  url = {https://hyunjimoon.github.io/SBC/},
}

@Manual{R-digest,
  title = {digest: Create Compact Hash Digests of R Objects},
  author = {Dirk Eddelbuettel with contributions by Antoine Lucas and Jarek Tuszynski and Henrik Bengtsson and Simon Urbanek and Mario Frasca and Bryan Lewis and Murray Stokely and Hannes Muehleisen and Duncan Murdoch and Jim Hester and Wush Wu and Qiang Kou and Thierry Onkelinx and Michel Lang and Viliam Simko and Kurt Hornik and Radford Neal M. and Kendon Bell and Matthew {de Queljoe} and Ion Suruceanu and Bill Denney and Dirk Schumacher and and Winston Chang},
  year = {2021},
  note = {R package version 0.6.29},
  url = {https://CRAN.R-project.org/package=digest},
}
@Manual{R-rethinking,
  title = {rethinking: Statistical Rethinking book package},
  author = {Richard McElreath},
  year = {2021},
  note = {R package version 2.21},
}
@Manual{R-tinylabels,
  title = {{tinylabels}: Lightweight Variable Labels},
  author = {Marius Barth},
  year = {2023},
  note = {R package version 0.2.4},
  url = {https://github.com/mariusbarth/tinylabels},
}