From b83a355982b178ee026d167aacf7c77276b84eec Mon Sep 17 00:00:00 2001 From: Graham McVicker Date: Tue, 3 Jul 2018 14:00:36 -0700 Subject: [PATCH] update CHANGELOG in preparation for v0.3.0 release --- CHANGELOG.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 645c9e4..75ab045 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,15 @@ +Version 0.3.0 - July 3, 2018 +----------- +This release moves the codebase from Python2 to Python3 and includes several additional improvements. + +Changes include: +* Switch to Python3 from Python2 +* Switch to PyTables version 3 +* General cleanup of code to conform to PEP8 style +* Better matching of VCF files to chromosomes in snp2h5 (uses name of chromosome within VCF, rather than relying on filename) +* add --txt_counts option to bam2h5.py as a simple way to obtain a file with allele-specific counts. The bam2h5.py should now be used instead of the get_as_counts.py script (which double counts reads that overlap multiple SNPs). + + Version 0.2.2 - November 15, 2017 -----------