README.rst

ggshu

This is alpha software and very subject to change!

A utility package to transform dataframes into shu data.

Example

(
    ggmap(
        df_cond,
        aes(reaction="r", color="flux", size="flux", condition="cond", y="kcat"),
    )
    # plot flux to color and size of reactions
    + geom_arrow()
    # plot kcat as histogram shows on left side of reactions
    + geom_hist(side="left")
    # plot conc to color of metabolites
    + geom_metabolite(aes=aes(color="conc", metabolite="m"))
    # plot km as density plots shows on hover on metabolites
    + geom_kde(aes=aes(y="km"), mets=True)
).to_json("shu_data")