-
Notifications
You must be signed in to change notification settings - Fork 1
/
setup.py
54 lines (51 loc) · 1.94 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
import re
import setuptools
import subprocess
import sys
try:
result = subprocess.run(
[sys.executable, "-m", "pip", "show", "pkg_utils"],
check=True, capture_output=True)
match = re.search(r'\nVersion: (.*?)\n', result.stdout.decode(), re.DOTALL)
assert match and tuple(match.group(1).split('.')) >= ('0', '0', '5')
except (subprocess.CalledProcessError, AssertionError):
subprocess.run(
[sys.executable, "-m", "pip", "install", "-U", "pkg_utils"],
check=True)
import os
import pkg_utils
name = 'biosimulators_amici'
dirname = os.path.dirname(__file__)
# get package metadata
md = pkg_utils.get_package_metadata(dirname, name)
# install package
setuptools.setup(
name=name,
version=md.version,
description=("BioSimulators-compliant command-line interface to "
"the AMICI simulation program <https://github.com/AMICI-dev/amici>."),
long_description=md.long_description,
url="https://github.com/biosimulators/Biosimulators_AMICI>",
download_url="https://github.com/biosimulators/Biosimulators_AMICI",
author='Center for Reproducible Biomedical Modeling',
author_email="[email protected]",
license="MIT",
keywords=['BioSimulators', 'systems biology', 'computational biology', 'mathematical model',
'kinetic model', 'simulation', 'SBML', 'SED-ML', 'COMBINE', 'OMEX'],
packages=setuptools.find_packages(exclude=['tests', 'tests.*']),
install_requires=md.install_requires,
extras_require=md.extras_require,
tests_require=md.tests_require,
dependency_links=md.dependency_links,
classifiers=[
'Development Status :: 3 - Alpha',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Topic :: Scientific/Engineering :: Bio-Informatics',
],
entry_points={
'console_scripts': [
'biosimulators-amici = biosimulators_amici.__main__:main',
],
},
)