The data is distributed under the Simple Standard for Sharing Ontology Mappings
(SSSOM) format. Each file is assigned a PURL in the https://w3id.org/biopragmatics/biomappings/sssom/
namespace.
Warning The SSSOM export contains a combination of the manually curated positive mappings and predicted mappings. Please use the mapping justification and confidence accordingly. Note that prediction confidences are generated by each prediction script according to its own rules - some give a global confidence and some give a prediction-specific confidence.
| Facet | Description | PURL | Link |
|---|---|---|---|
| TSV | Mappings (predicted and curated) | https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.tsv | docs/_data/biomappings.sssom.tsv |
| Metadata YML | Metadata that go along with the TSV export | https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.yml | docs/_data/biomappings.sssom.yml |
| JSON | Mappings in JSON | https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.json | docs/_data/biomappings.sssom.json |
| OWL | Mappings in ontology format | https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.owl | docs/_data/biomappings.sssom.owl |