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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["setuptools >= 61.1.0", "wheel"]
build-backend = "setuptools.build_meta"
[project]
name = "biomass"
description = "A Python Framework for Modeling and Analysis of Signaling Systems"
readme = "README.md"
license = {text = "Apache-2.0"}
authors = [
{name = "Hiroaki Imoto"},
]
maintainers = [
{name = "Hiroaki Imoto", email = "[email protected]"},
]
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Natural Language :: English",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Topic :: Scientific/Engineering",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Software Development",
"Topic :: Software Development :: Libraries",
"Topic :: Software Development :: Libraries :: Python Modules",
]
requires-python = ">=3.8"
dependencies = [
"matplotlib>=3.0",
"numba>=0.56",
"numpy>=1.17",
"pandas>=0.24",
"scipy>=1.6",
"seaborn>=0.11.2",
"tqdm>=4.50.2",
"setuptools; python_version >= '3.12'",
]
dynamic = ["version"]
[project.optional-dependencies]
dev = [
"black",
"flake8",
"isort",
"pre-commit",
"pytest",
]
docs = [
"sphinx",
"sphinx_rtd_theme>=1.2.0",
"sphinx_autodoc_typehints>=1.10.3",
"sphinxcontrib-bibtex>=2.2.0",
]
graph = [
"pygraphviz>=1.9",
"pyvis>=0.2.1,<0.3",
]
[project.urls]
repository = "https://github.com/biomass-dev/biomass"
documentation = "https://biomass-core.readthedocs.io/en/latest/"
bugtracker = "https://github.com/biomass-dev/biomass/issues"
[tool.setuptools.packages.find]
exclude = ["docs", "tests"]
[tool.setuptools.dynamic]
version = {attr = "biomass.version.__version__"}
[tool.black]
line-length = 99
target-version = ['py39']
exclude = '''
/(
\.eggs
| \.git
| \.mypy_cache
| build
| dist
)/
'''
[tool.isort]
profile = 'black'
src_paths = ['biomass']
line_length = 99
multi_line_output = 3
include_trailing_comma = true
force_grid_wrap = 0
use_parentheses = true
ensure_newline_before_comments = true