v3.5.3

What's Changed

• fix: chemical-affects-gene-association aspect qualifier range by @colleenXu in #1362
• add association slot annotation to support graphs slot, add 'semmed agreement count' as an association slot by @sierra-moxon in #1364
• Adds synonym to named thing, removes it from gene by @kevinschaper in #1369
• Update domain and range of gene condition association by @nicholsn in #1367
• Bump certifi from 2023.5.7 to 2023.7.22 by @dependabot in #1365

Full Changelog: v3.5.2...v3.5.3

v3.5.2

What's Changed

• refactor exclusion list code to remove predicate 'humn', fix t-codes by @sierra-moxon in #1358
• Exlusion list by @sierra-moxon in #1359
• more infores updates by @sierra-moxon in #1360

Full Changelog: v3.5.1...v3.5.2

v3.5.1

What's Changed

• a few new entries for the infores catalog by @EvanDietzMorris in #1350
• fix duplicated 'deprecated' syntax by @sierra-moxon in #1349
• Semmed exclusion yaml by @sierra-moxon in #1356
• Information resource updates - per TAQA curation by @sierra-moxon in #1357

Full Changelog: v3.5.0...v3.5.1

v3.5.0

What's Changed

• Adding xref for Text Mining KP by @edgargaticaCU in #1332
• Update MolePro xref in infores catalog by @vdancik in #1334
• Fix broken link in guidelines/README.md by @Daniel-Mietchen in #1336
• update BTE link in infores catalog by @andrewsu in #1337
• Add "full name" slot to the "named thing" slot list by @kevinschaper in #1335
• log odds ratio 95 ci by @CaseyTa in #1340
• Update dataset iri mappings by @nicholsn in #1338
• Stop gap changes to infores_catalog.yaml including knowledge_level and agent_type fields by @sierra-moxon in #1331
• Update BTE link to point to Translator wiki page by @andrewsu in #1342
• add simple script to extract infores resources without URLs or with g… by @sierra-moxon in #1343
• Updated infores catalog according to spreadsheet curation by @sierra-moxon in #1345
• fix : in url by @sierra-moxon in #1346
• Update infores_catalog.yaml by @karafecho in #1347

New Contributors

• @Daniel-Mietchen made their first contribution in #1336
• @nicholsn made their first contribution in #1338

Full Changelog: v3.4.3...v3.5.0

v3.4.3

What's Changed

• add 'in taxon label' as a slot on 'thing with taxon' by @kevinschaper in #1329

Full Changelog: v3.4.2...v3.4.3

v3.4.2

What's Changed

• Remove infores import by @sierra-moxon in #1327

Full Changelog: v3.4.1...v3.4.2

v3.4.1

Full Changelog: v3.4.0...v3.4.1

v3.4.0

What's Changed

• add properties for clinical wg per request in 1301, fixes #1301 by @sierra-moxon in #1317
• mappings for attribute server work by @sierra-moxon in #1316
• remove reachable from enum by @sierra-moxon in #1322
• Bump requests from 2.28.2 to 2.31.0 by @dependabot in #1319
• adding causitive and correlated gene to disease associations, fixes #1320, fixes #1321 by @sierra-moxon in #1323
• Bump requests from 2.28.2 to 2.31.0 by @dependabot in #1324
• update linkml version, update in prep for a release by @sierra-moxon in #1325
• partially fixes Feedback #178 by @sierra-moxon in #1318

Full Changelog: v3.3.4...v3.4.0

v3.3.4

What's Changed

• Propose definition for biolink:population_count by @CaseyTa in #1307
• deprecating sources via conversation in slack about biggim, bigclam, and clinical-profiles, also fixes #1291 by @sierra-moxon in #1308
• revised property in collaboration with Casey Ta by @sierra-moxon in #1309
• make document type slot multivalued by @vincentvialard in #1312
• Fixed some tab issues in infores_catalog_nodes.tsv by @gaurav in #1314
• Infores as YAML instead of TSV to avoid formatting issues by @sierra-moxon in #1313

Full Changelog: v3.3.3...v3.3.4

v3.3.3

What's Changed

• Add code to check that URLs in infores data dictionary resolve by @sierra-moxon in #1305

Full Changelog: v3.3.2...v3.3.3