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sambamba markdup stuck in the finding positions of the duplicate reads in the file... #519

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xiechangxiao opened this issue Jul 11, 2024 · 0 comments
Open

sambamba markdup stuck in the finding positions of the duplicate reads in the file... #519

xiechangxiao opened this issue Jul 11, 2024 · 0 comments

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@xiechangxiao
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The sambamba markdup stuck when I was using 20 threads, but it worked when I was using 10 threads.
cmd:
sambamba markdup -t 20 -l 6 -p --tmpdir=./tmp sort.bam out.bam
360截图20240711132310074
@lomereiter
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@xiechangxiao