New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

sambamba-sort: index [1] exceeds array of length 1 #516

Open

ScienceAdvances opened this issue Apr 18, 2024 · 0 comments

Labels

bug

ScienceAdvances commented Apr 18, 2024 •

edited

Loading

Only bug reports!

sambamba view --with-header --format bam --sam-input --nthreads 48 A.sam | \
sambamba sort --compression-level 9 --nthreads 48 --tmpdir ./temp --out A.bam

Describe the bug

sambamba-sort: index [1] exceeds array of length 1

To Reproduce

Steps to reproduce the behavior:
sambamba version 1.0.0

ScienceAdvances added the bug label

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment