Traceback (most recent call last): File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/connection.py", line 198, in _new_conn sock = connection.create_connection( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/util/connection.py", line 85, in create_connection raise err File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/util/connection.py", line 73, in create_connection sock.connect(sa) TimeoutError: [Errno 110] Connection timed out The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/connectionpool.py", line 793, in urlopen response = self._make_request( ^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/connectionpool.py", line 496, in _make_request conn.request( File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/connection.py", line 400, in request self.endheaders() File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/http/client.py", line 1293, in endheaders self._send_output(message_body, encode_chunked=encode_chunked) File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/http/client.py", line 1052, in _send_output self.send(msg) File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/http/client.py", line 990, in send self.connect() File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/connection.py", line 238, in connect self.sock = self._new_conn() ^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/connection.py", line 207, in _new_conn raise ConnectTimeoutError( urllib3.exceptions.ConnectTimeoutError: (, 'Connection to qiita.ucsd.edu timed out. (connect timeout=None)') The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/requests/adapters.py", line 486, in send resp = conn.urlopen( ^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/connectionpool.py", line 847, in urlopen retries = retries.increment( ^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/urllib3/util/retry.py", line 515, in increment raise MaxRetryError(_pool, url, reason) from reason # type: ignore[arg-type] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ urllib3.exceptions.MaxRetryError: HTTPConnectionPool(host='qiita.ucsd.edu', port=7329): Max retries exceeded with url: /SMEMBERS/metadata:text-search:beer.json (Caused by ConnectTimeoutError(, 'Connection to qiita.ucsd.edu timed out. (connect timeout=None)')) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/weighk01/miniconda3/envs/redbiom/bin/redbiom", line 10, in sys.exit(cli()) ^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/click/core.py", line 1157, in __call__ return self.main(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/click/core.py", line 1078, in main rv = self.invoke(ctx) ^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/click/core.py", line 1688, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/click/core.py", line 1688, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/click/core.py", line 1434, in invoke return ctx.invoke(self.callback, **ctx.params) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/click/core.py", line 783, in invoke return __callback(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/redbiom/commands/search.py", line 123, in search_metadata for i in redbiom.search.metadata_full(query, categories): ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/redbiom/search.py", line 53, in metadata_full samples.update(redbiom.set_expr.seteval(q, get=get, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/redbiom/set_expr.py", line 93, in seteval result = eval(ast.dump(formed)) ^^^^^^^^^^^^^^^^^^^^^^ File "", line 1, in File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/redbiom/set_expr.py", line 18, in Name return set(ctx('metadata:%s' % target, 'SMEMBERS', stem)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/redbiom/_requests.py", line 95, in f return _parse_validate_request(s.get(url), cmd) ^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/requests/sessions.py", line 602, in get return self.request("GET", url, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/requests/sessions.py", line 589, in request resp = self.send(prep, **send_kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/requests/sessions.py", line 703, in send r = adapter.send(request, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/weighk01/miniconda3/envs/redbiom/lib/python3.11/site-packages/requests/adapters.py", line 507, in send raise ConnectTimeout(e, request=request) requests.exceptions.ConnectTimeout: HTTPConnectionPool(host='qiita.ucsd.edu', port=7329): Max retries exceeded with url: /SMEMBERS/metadata:text-search:beer.json (Caused by ConnectTimeoutError(, 'Connection to qiita.ucsd.edu timed out. (connect timeout=None)'))