diff --git a/build-fail-blacklist b/build-fail-blacklist index 7d185e357e679..b1d1b14818ee5 100644 --- a/build-fail-blacklist +++ b/build-fail-blacklist @@ -369,7 +369,6 @@ recipes/vcftools/0.1.11 # broken pipe recipes/antarna - # missing perl module recipes/snippy/3.0 @@ -414,7 +413,7 @@ recipes/bcbio-rnaseq # missing python requirements? recipes/illuminate -# wired Docker permission error +# weird Docker permission error recipes/bpipe # perl bad interpreter @@ -680,9 +679,6 @@ recipes/bioconductor-diffbind/2.2.12 recipes/bioconductor-xcms/1.52.0 recipes/bioconductor-s4vectors/0.8.11 -# r-bibitr missing -> missing V8 in conda-forge -recipes/bioconductor-mirsm - # Marked as build fails in bioconductor release 3.9 recipes/bioconductor-birte recipes/bioconductor-dsimer @@ -691,2481 +687,106 @@ recipes/bioconductor-gpumagic recipes/bioconductor-flowq recipes/bioconductor-procona recipes/bioconductor-pgpc +recipes/bioconductor-appreci8r # stringify can't find libmysqlclient.18 recipes/ucsc-overlapselect recipes/ucsc-pslmap recipes/ucsc-pslcdnafilter -# Only compatible with R >=3.6, which isn't supported by conda-forge yet -recipes/bioconductor-ssrch -recipes/bioconductor-depecher -recipes/bioconductor-msstats -recipes/bioconductor-msstatstmt -recipes/bioconductor-simlr -recipes/bioconductor-smad -recipes/bioconductor-graper -recipes/bioconductor-sitepath -recipes/bioconductor-alevinqc -recipes/bioconductor-topconfects -recipes/bioconductor-specl -recipes/bioconductor-pathwaypca -recipes/bioconductor-biocversion -recipes/bioconductor-rmelting -recipes/bioconductor-tpp2d -recipes/bioconductor-isocorrectorgui -recipes/bioconductor-dcanr -recipes/bioconductor-bigpint -recipes/bioconductor-subcellbarcode -recipes/bioconductor-gladiatox -recipes/bioconductor-biocgenerics -recipes/bioconductor-dnabarcodecompatibility -recipes/bioconductor-hyper -recipes/bioconductor-coregflux - # Source seems to have moved recipes/discovar # Requires GTK+ recipes/bioconductor-hilbertvisgui -# r-base 3.5.1 and root5 5.34.36 are incompatible -recipes/bioconductor-xps - # Build fails in bulk recipes/rmblast recipes/perl-bio-db-hts -# compilation errors -recipes/bioconductor-bgmix - -# requires a functional X server -recipes/bioconductor-easyqpcr - # missing dependency r-dagitty recipes/r-pcalg +recipes/bioconductor-mirlab +recipes/bioconductor-epinem +recipes/bioconductor-mnem # Source no longer exists at the URL recipes/recon -# Depends on bioconductor-biocgenerics, which can't be built until after R 3.6.1 is released and conda-forge moves its pinnings -recipes/bioconductor-a4 -recipes/bioconductor-a4base -recipes/bioconductor-a4classif -recipes/bioconductor-a4core -recipes/bioconductor-a4preproc -recipes/bioconductor-a4reporting -recipes/bioconductor-abaenrichment -recipes/bioconductor-abarray -recipes/bioconductor-ace -recipes/bioconductor-acgh -recipes/bioconductor-acme -recipes/bioconductor-adacgh2 -recipes/bioconductor-adam 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-recipes/bioconductor-doppelgangr -recipes/bioconductor-doqtl -recipes/bioconductor-doscheda -recipes/bioconductor-dose -recipes/bioconductor-doser -recipes/bioconductor-dream4 -recipes/bioconductor-dresscheck -recipes/bioconductor-drimseq -recipes/bioconductor-dropletutils -recipes/bioconductor-drosgenome1cdf -recipes/bioconductor-drosgenome1.db -recipes/bioconductor-drosgenome1probe -recipes/bioconductor-drosophila2cdf -recipes/bioconductor-drosophila2.db -recipes/bioconductor-drosophila2probe -recipes/bioconductor-drugvsdisease -recipes/bioconductor-dsqtl -recipes/bioconductor-dss -recipes/bioconductor-dualks -recipes/bioconductor-duoclustering2018 -recipes/bioconductor-dyebias -recipes/bioconductor-dyebiasexamples -recipes/bioconductor-easyrnaseq -recipes/bioconductor-eatonetalchipseq -recipes/bioconductor-ebarrays -recipes/bioconductor-ebcoexpress -recipes/bioconductor-ebimage -recipes/bioconductor-ecoli2cdf -recipes/bioconductor-ecoli2.db -recipes/bioconductor-ecoli2probe -recipes/bioconductor-ecoliasv2cdf -recipes/bioconductor-ecoliasv2probe -recipes/bioconductor-ecolicdf -recipes/bioconductor-ecolik12.db0 -recipes/bioconductor-ecolileucine -recipes/bioconductor-ecoliprobe -recipes/bioconductor-ecolisakai.db0 -recipes/bioconductor-ecolitk -recipes/bioconductor-edaseq -recipes/bioconductor-edda -recipes/bioconductor-edge -recipes/bioconductor-eegc -recipes/bioconductor-egad -recipes/bioconductor-egsea -recipes/bioconductor-eir -recipes/bioconductor-eisa -recipes/bioconductor-elmer -recipes/bioconductor-elmer.data -recipes/bioconductor-encodexplorer -recipes/bioconductor-encodexplorerdata -recipes/bioconductor-enmix -recipes/bioconductor-enrichedheatmap -recipes/bioconductor-enrichmentbrowser -recipes/bioconductor-enrichplot -recipes/bioconductor-enrichtf -recipes/bioconductor-ensdb.hsapiens.v75 -recipes/bioconductor-ensdb.hsapiens.v79 -recipes/bioconductor-ensdb.hsapiens.v86 -recipes/bioconductor-ensdb.mmusculus.v75 -recipes/bioconductor-ensdb.mmusculus.v79 -recipes/bioconductor-ensdb.rnorvegicus.v75 -recipes/bioconductor-ensdb.rnorvegicus.v79 -recipes/bioconductor-ensembldb -recipes/bioconductor-ensemblvep -recipes/bioconductor-epigenomix -recipes/bioconductor-epihet -recipes/bioconductor-epinem -recipes/bioconductor-epivizr -recipes/bioconductor-epivizrchart -recipes/bioconductor-epivizrdata -recipes/bioconductor-epivizrstandalone -recipes/bioconductor-erma -recipes/bioconductor-erssa -recipes/bioconductor-esatac -recipes/bioconductor-esetvis -recipes/bioconductor-etec16s -recipes/bioconductor-eudysbiome -recipes/bioconductor-eupathdb -recipes/bioconductor-evaluomer -recipes/bioconductor-eventpointer -recipes/bioconductor-excluster -recipes/bioconductor-eximir -recipes/bioconductor-exomecopy -recipes/bioconductor-exomepeak -recipes/bioconductor-experimenthub -recipes/bioconductor-experimenthubdata -recipes/bioconductor-expressionatlas -recipes/bioconductor-expressionview -recipes/bioconductor-faahko -recipes/bioconductor-fabia -recipes/bioconductor-fabiadata -recipes/bioconductor-facsdorit -recipes/bioconductor-factdesign -recipes/bioconductor-famagg -recipes/bioconductor-farms -recipes/bioconductor-fastliquidassociation -recipes/bioconductor-fastqcleaner -recipes/bioconductor-fastseg -recipes/bioconductor-fcbf -recipes/bioconductor-fccac -recipes/bioconductor-fdb.fantom4.promoters.hg19 -recipes/bioconductor-fdb.infiniummethylation.hg18 -recipes/bioconductor-fdb.infiniummethylation.hg19 -recipes/bioconductor-fdb.ucsc.snp135common.hg19 -recipes/bioconductor-fdb.ucsc.snp137common.hg19 -recipes/bioconductor-fdb.ucsc.trnas -recipes/bioconductor-fella -recipes/bioconductor-fem -recipes/bioconductor-ffpe -recipes/bioconductor-ffpeexampledata -recipes/bioconductor-fibroeset -recipes/bioconductor-findmyfriends -recipes/bioconductor-fishalyser -recipes/bioconductor-fishpond -recipes/bioconductor-fission -recipes/bioconductor-fitcons.ucsc.hg19 -recipes/bioconductor-flagme -recipes/bioconductor-fletcher2013a -recipes/bioconductor-fletcher2013b -recipes/bioconductor-flowai -recipes/bioconductor-flowbeads -recipes/bioconductor-flowbin -recipes/bioconductor-flowcatchr -recipes/bioconductor-flowchic -recipes/bioconductor-flowcl -recipes/bioconductor-flowclean -recipes/bioconductor-flowclust -recipes/bioconductor-flowcore -recipes/bioconductor-flowdensity -recipes/bioconductor-flowfit -recipes/bioconductor-flowfitexampledata -recipes/bioconductor-flowfp -recipes/bioconductor-flowmatch -recipes/bioconductor-flowmeans -recipes/bioconductor-flowmerge -recipes/bioconductor-flowploidy -recipes/bioconductor-flowqb -recipes/bioconductor-flowsom -recipes/bioconductor-flowsorted.blood.450k -recipes/bioconductor-flowsorted.blood.epic -recipes/bioconductor-flowsorted.cordblood.450k -recipes/bioconductor-flowsorted.cordbloodcombined.450k -recipes/bioconductor-flowsorted.cordbloodnorway.450k -recipes/bioconductor-flowsorted.dlpfc.450k -recipes/bioconductor-flowstats -recipes/bioconductor-flowtime -recipes/bioconductor-flowtrans -recipes/bioconductor-flowtype -recipes/bioconductor-flowutils -recipes/bioconductor-flowviz -recipes/bioconductor-flowvs -recipes/bioconductor-flowworkspace -recipes/bioconductor-fly.db0 -recipes/bioconductor-fmcsr -recipes/bioconductor-focalcall -recipes/bioconductor-foldgo -recipes/bioconductor-fourcseq -recipes/bioconductor-frma -recipes/bioconductor-frmatools -recipes/bioconductor-funchip -recipes/bioconductor-funcisnp -recipes/bioconductor-funcisnp.data -recipes/bioconductor-funtoonorm -recipes/bioconductor-furrowseg -recipes/bioconductor-ga4ghclient -recipes/bioconductor-ga4ghshiny -recipes/bioconductor-gaga -recipes/bioconductor-gage -recipes/bioconductor-gaggle -recipes/bioconductor-gapgom -recipes/bioconductor-gars -recipes/bioconductor-gaschyhs -recipes/bioconductor-gatefinder -recipes/bioconductor-gcapc -recipes/bioconductor-gcmap -recipes/bioconductor-gcmapweb -recipes/bioconductor-gcrisprtools -recipes/bioconductor-gcrma -recipes/bioconductor-gdcrnatools -recipes/bioconductor-gdsarray -recipes/bioconductor-genbankr -recipes/bioconductor-geneaccord -recipes/bioconductor-geneanswers -recipes/bioconductor-geneattribution -recipes/bioconductor-genebreak -recipes/bioconductor-geneclassifiers -recipes/bioconductor-geneexpressionsignature -recipes/bioconductor-genefilter -recipes/bioconductor-genefu -recipes/bioconductor-genegeneinter -recipes/bioconductor-genelendatabase -recipes/bioconductor-genemeta -recipes/bioconductor-genenetworkbuilder -recipes/bioconductor-geneplotter -recipes/bioconductor-generecommender -recipes/bioconductor-generegionscan -recipes/bioconductor-generxcluster -recipes/bioconductor-geneselectmmd -recipes/bioconductor-geneselector -recipes/bioconductor-genesis -recipes/bioconductor-genestructuretools -recipes/bioconductor-genetclassifier -recipes/bioconductor-genextender -recipes/bioconductor-genogam -recipes/bioconductor-genomation -recipes/bioconductor-genomegraphs -recipes/bioconductor-genomeinfodb -recipes/bioconductor-genomeintervals -recipes/bioconductor-genomicdatacommons -recipes/bioconductor-genomicfiles -recipes/bioconductor-genomicinteractions -recipes/bioconductor-genomicranges -recipes/bioconductor-genomicscores -recipes/bioconductor-genomictuples -recipes/bioconductor-genominator -recipes/bioconductor-genoset -recipes/bioconductor-genotypeeval +# Fails compilation everywhere, including the bioconductor build system +recipes/bioconductor-mlm4omics + +# compilation errors on Linux and OSX +recipes/bioconductor-bgmix +recipes/bioconductor-grenits +recipes/bioconductor-mulcom +recipes/bioconductor-prot2d recipes/bioconductor-genphen -recipes/bioconductor-genvisr -recipes/bioconductor-geometadb -recipes/bioconductor-geoquery -recipes/bioconductor-geosubmission -recipes/bioconductor-gep2pep -recipes/bioconductor-gesper -recipes/bioconductor-geuvpack -recipes/bioconductor-geuvstore2 -recipes/bioconductor-ggbase -recipes/bioconductor-ggbio -recipes/bioconductor-ggcyto -recipes/bioconductor-ggdata -recipes/bioconductor-gghumanmethcancerpanelv1.db -recipes/bioconductor-ggtools -recipes/bioconductor-girafe -recipes/bioconductor-gispa -recipes/bioconductor-glimma -recipes/bioconductor-glmsparsenet -recipes/bioconductor-globalancova -recipes/bioconductor-globaltest +recipes/bioconductor-bgx +recipes/bioconductor-netboost + +# Works on linux but can't build on OSX recipes/bioconductor-gmapr -recipes/bioconductor-gmrp -recipes/bioconductor-gnet2 -recipes/bioconductor-go.db -recipes/bioconductor-goexpress -recipes/bioconductor-gofuncr -recipes/bioconductor-gofunction -recipes/bioconductor-golubesets -recipes/bioconductor-googlegenomics -recipes/bioconductor-gopro -recipes/bioconductor-goprofiles -recipes/bioconductor-gosemsim -recipes/bioconductor-goseq -recipes/bioconductor-gosim -recipes/bioconductor-gostag -recipes/bioconductor-gostats -recipes/bioconductor-gothic -recipes/bioconductor-gotools -recipes/bioconductor-gp53cdf -recipes/bioconductor-gpart -recipes/bioconductor-gqtlbase -recipes/bioconductor-gqtlstats -recipes/bioconductor-graph -recipes/bioconductor-graphat -recipes/bioconductor-graphite -recipes/bioconductor-graphpac -recipes/bioconductor-grasp2db -recipes/bioconductor-greengenes13.5mgdb -recipes/bioconductor-greylistchip -recipes/bioconductor-grmetrics -recipes/bioconductor-grohmm -recipes/bioconductor-grridge -recipes/bioconductor-gse62944 -recipes/bioconductor-gseabase -recipes/bioconductor-gseabenchmarker -recipes/bioconductor-gsealm -recipes/bioconductor-gsean -recipes/bioconductor-gsreg -recipes/bioconductor-gsri -recipes/bioconductor-gsva -recipes/bioconductor-gsvadata -recipes/bioconductor-gtrellis -recipes/bioconductor-guideseq -recipes/bioconductor-guitar -recipes/bioconductor-gviz -recipes/bioconductor-gwascat -recipes/bioconductor-gwasdata -recipes/bioconductor-gwastools -recipes/bioconductor-gwasurvivr -recipes/bioconductor-h10kcod.db -recipes/bioconductor-h20kcod.db -recipes/bioconductor-h5vc -recipes/bioconductor-hapfabia -recipes/bioconductor-harbchip -recipes/bioconductor-harmonizedtcgadata -recipes/bioconductor-harshlight -recipes/bioconductor-hcabrowser -recipes/bioconductor-hcadata -recipes/bioconductor-hcg110cdf -recipes/bioconductor-hcg110.db -recipes/bioconductor-hcg110probe -recipes/bioconductor-hd2013sgi -recipes/bioconductor-hdcytodata -recipes/bioconductor-hdf5array -recipes/bioconductor-healthyflowdata -recipes/bioconductor-heatmaps -recipes/bioconductor-helloranges -recipes/bioconductor-help -recipes/bioconductor-hem -recipes/bioconductor-hgfocuscdf -recipes/bioconductor-hgfocus.db -recipes/bioconductor-hgfocusprobe -recipes/bioconductor-hgu133a2cdf -recipes/bioconductor-hgu133a2.db -recipes/bioconductor-hgu133a2probe -recipes/bioconductor-hgu133acdf -recipes/bioconductor-hgu133a.db -recipes/bioconductor-hgu133aprobe -recipes/bioconductor-hgu133atagcdf -recipes/bioconductor-hgu133atagprobe -recipes/bioconductor-hgu133bcdf -recipes/bioconductor-hgu133b.db -recipes/bioconductor-hgu133bprobe -recipes/bioconductor-hgu133plus2cdf -recipes/bioconductor-hgu133plus2cellscore -recipes/bioconductor-hgu133plus2.db -recipes/bioconductor-hgu133plus2probe -recipes/bioconductor-hgu219cdf -recipes/bioconductor-hgu219.db -recipes/bioconductor-hgu219probe -recipes/bioconductor-hgu95acdf -recipes/bioconductor-hgu95a.db -recipes/bioconductor-hgu95aprobe -recipes/bioconductor-hgu95av2cdf -recipes/bioconductor-hgu95av2.db -recipes/bioconductor-hgu95av2probe -recipes/bioconductor-hgu95bcdf -recipes/bioconductor-hgu95b.db -recipes/bioconductor-hgu95bprobe -recipes/bioconductor-hgu95ccdf -recipes/bioconductor-hgu95c.db -recipes/bioconductor-hgu95cprobe -recipes/bioconductor-hgu95dcdf -recipes/bioconductor-hgu95d.db -recipes/bioconductor-hgu95dprobe -recipes/bioconductor-hgu95ecdf -recipes/bioconductor-hgu95e.db -recipes/bioconductor-hgu95eprobe -recipes/bioconductor-hguatlas13k.db -recipes/bioconductor-hgubeta7.db -recipes/bioconductor-hgudkfz31.db -recipes/bioconductor-hgug4100a.db -recipes/bioconductor-hgug4101a.db -recipes/bioconductor-hgug4110b.db -recipes/bioconductor-hgug4111a.db -recipes/bioconductor-hgug4112a.db -recipes/bioconductor-hgug4845a.db -recipes/bioconductor-hguqiagenv3.db -recipes/bioconductor-hi16cod.db -recipes/bioconductor-hiannotator -recipes/bioconductor-hicbricks -recipes/bioconductor-hiccompare -recipes/bioconductor-hiiragi2013 -recipes/bioconductor-hilbertcurve -recipes/bioconductor-hipathia -recipes/bioconductor-hireadsprocessor -recipes/bioconductor-hitc -recipes/bioconductor-hivprtplus2cdf -recipes/bioconductor-hmdbquery -recipes/bioconductor-hmmcopy -recipes/bioconductor-hmp16sdata -recipes/bioconductor-hmyrib36 -recipes/bioconductor-hom.at.inp.db -recipes/bioconductor-hom.ce.inp.db -recipes/bioconductor-hom.dm.inp.db -recipes/bioconductor-hom.dr.inp.db -recipes/bioconductor-hom.hs.inp.db -recipes/bioconductor-hom.mm.inp.db -recipes/bioconductor-homo.sapiens -recipes/bioconductor-hom.rn.inp.db -recipes/bioconductor-hom.sc.inp.db -recipes/bioconductor-hopach -recipes/bioconductor-hs25kresogen.db -recipes/bioconductor-hs6ug171.db -recipes/bioconductor-hsagilentdesign026652.db -recipes/bioconductor-hspec -recipes/bioconductor-hspeccdf -recipes/bioconductor-hta20probeset.db -recipes/bioconductor-hta20transcriptcluster.db -recipes/bioconductor-hthgu133acdf -recipes/bioconductor-hthgu133a.db -recipes/bioconductor-hthgu133aprobe -recipes/bioconductor-hthgu133bcdf -recipes/bioconductor-hthgu133b.db -recipes/bioconductor-hthgu133bprobe -recipes/bioconductor-hthgu133pluspmcdf -recipes/bioconductor-hthgu133pluspmprobe -recipes/bioconductor-htmg430acdf -recipes/bioconductor-htmg430aprobe -recipes/bioconductor-htmg430bcdf -recipes/bioconductor-htmg430bprobe -recipes/bioconductor-htmg430pmcdf -recipes/bioconductor-htmg430pmprobe -recipes/bioconductor-htqpcr -recipes/bioconductor-htrat230pmcdf -recipes/bioconductor-htrat230pmprobe -recipes/bioconductor-htratfocuscdf -recipes/bioconductor-htratfocusprobe -recipes/bioconductor-htsanalyzer -recipes/bioconductor-htseqgenie -recipes/bioconductor-htseqtools -recipes/bioconductor-htsfilter -recipes/bioconductor-hu35ksubacdf -recipes/bioconductor-hu35ksuba.db -recipes/bioconductor-hu35ksubaprobe -recipes/bioconductor-hu35ksubbcdf -recipes/bioconductor-hu35ksubb.db -recipes/bioconductor-hu35ksubbprobe -recipes/bioconductor-hu35ksubccdf -recipes/bioconductor-hu35ksubc.db -recipes/bioconductor-hu35ksubcprobe -recipes/bioconductor-hu35ksubdcdf -recipes/bioconductor-hu35ksubd.db -recipes/bioconductor-hu35ksubdprobe -recipes/bioconductor-hu6800cdf -recipes/bioconductor-hu6800.db -recipes/bioconductor-hu6800probe -recipes/bioconductor-hu6800subacdf -recipes/bioconductor-hu6800subbcdf -recipes/bioconductor-hu6800subccdf -recipes/bioconductor-hu6800subdcdf -recipes/bioconductor-huex10stprobeset.db -recipes/bioconductor-huex10sttranscriptcluster.db -recipes/bioconductor-huexexonprobesetlocation -recipes/bioconductor-huexexonprobesetlocationhg18 -recipes/bioconductor-huexexonprobesetlocationhg19 -recipes/bioconductor-hugene10stprobeset.db -recipes/bioconductor-hugene10sttranscriptcluster.db -recipes/bioconductor-hugene10stv1cdf -recipes/bioconductor-hugene10stv1probe -recipes/bioconductor-hugene11stprobeset.db -recipes/bioconductor-hugene11sttranscriptcluster.db -recipes/bioconductor-hugene20stprobeset.db -recipes/bioconductor-hugene20sttranscriptcluster.db -recipes/bioconductor-hugene21stprobeset.db -recipes/bioconductor-hugene21sttranscriptcluster.db -recipes/bioconductor-humanaffydata -recipes/bioconductor-human.db0 -recipes/bioconductor-humanstemcell -recipes/bioconductor-humantranscriptomecompendium -recipes/bioconductor-huo22.db -recipes/bioconductor-hwgcod.db -recipes/bioconductor-hybridmtest -recipes/bioconductor-hyperdraw -recipes/bioconductor-hypergraph -recipes/bioconductor-iasva -recipes/bioconductor-ibmq -recipes/bioconductor-icetea -recipes/bioconductor-icheck -recipes/bioconductor-icnv +recipes/bioconductor-lpsymphony +recipes/bioconductor-msd16s +recipes/bioconductor-etec16s +recipes/bioconductor-metavizr recipes/bioconductor-ideal -recipes/bioconductor-ideoviz -recipes/bioconductor-idiogram -recipes/bioconductor-idmappinganalysis -recipes/bioconductor-idmappingretrieval -recipes/bioconductor-igvr recipes/bioconductor-ihw -recipes/bioconductor-ihwpaper -recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19 -recipes/bioconductor-illuminahumanmethylation27k.db -recipes/bioconductor-illuminahumanmethylation27kmanifest -recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 -recipes/bioconductor-illuminahumanmethylation450kmanifest -recipes/bioconductor-illuminahumanmethylation450kprobe -recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 -recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19 -recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 -recipes/bioconductor-illuminahumanmethylationepicmanifest -recipes/bioconductor-illuminahumanv1.db -recipes/bioconductor-illuminahumanv2beadid.db -recipes/bioconductor-illuminahumanv2.db -recipes/bioconductor-illuminahumanv3.db -recipes/bioconductor-illuminahumanv4.db -recipes/bioconductor-illuminahumanwgdaslv3.db -recipes/bioconductor-illuminahumanwgdaslv4.db -recipes/bioconductor-illuminamousev1.db -recipes/bioconductor-illuminamousev1p1.db -recipes/bioconductor-illuminamousev2.db -recipes/bioconductor-illuminaratv1.db -recipes/bioconductor-imagehts -recipes/bioconductor-imas -recipes/bioconductor-imetagene -recipes/bioconductor-imman -recipes/bioconductor-immunespacer -recipes/bioconductor-immunoclust -recipes/bioconductor-impulsede2 -recipes/bioconductor-indac.db -recipes/bioconductor-infercnv -recipes/bioconductor-inpas 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-recipes/bioconductor-pd.ecoli -recipes/bioconductor-pd.e.coli.2 -recipes/bioconductor-pd.ecoli.asv2 -recipes/bioconductor-pd.elegene.1.0.st -recipes/bioconductor-pd.elegene.1.1.st -recipes/bioconductor-pd.equgene.1.0.st -recipes/bioconductor-pd.equgene.1.1.st -recipes/bioconductor-pd.feinberg.hg18.me.hx1 -recipes/bioconductor-pd.feinberg.mm8.me.hx1 -recipes/bioconductor-pd.felgene.1.0.st -recipes/bioconductor-pd.felgene.1.1.st -recipes/bioconductor-pd.fingene.1.0.st -recipes/bioconductor-pd.fingene.1.1.st -recipes/bioconductor-pd.genomewidesnp.5 -recipes/bioconductor-pd.genomewidesnp.6 -recipes/bioconductor-pd.guigene.1.0.st -recipes/bioconductor-pd.guigene.1.1.st -recipes/bioconductor-pd.hc.g110 -recipes/bioconductor-pd.hg18.60mer.expr -recipes/bioconductor-pd.hg.focus -recipes/bioconductor-pd.hg.u133a -recipes/bioconductor-pd.hg.u133a.2 -recipes/bioconductor-pd.hg.u133a.tag -recipes/bioconductor-pd.hg.u133b -recipes/bioconductor-pd.hg.u133.plus.2 -recipes/bioconductor-pd.hg.u219 -recipes/bioconductor-pd.hg.u95a -recipes/bioconductor-pd.hg.u95av2 -recipes/bioconductor-pd.hg.u95b -recipes/bioconductor-pd.hg.u95c -recipes/bioconductor-pd.hg.u95d -recipes/bioconductor-pd.hg.u95e -recipes/bioconductor-pd.hta.2.0 -recipes/bioconductor-pd.ht.hg.u133a -recipes/bioconductor-pd.ht.hg.u133.plus.pm -recipes/bioconductor-pd.ht.mg.430a -recipes/bioconductor-pd.hu6800 -recipes/bioconductor-pd.huex.1.0.st.v2 -recipes/bioconductor-pd.hugene.1.0.st.v1 -recipes/bioconductor-pd.hugene.1.1.st.v1 -recipes/bioconductor-pd.hugene.2.0.st -recipes/bioconductor-pd.hugene.2.1.st -recipes/bioconductor-pdinfobuilder -recipes/bioconductor-pd.maize -recipes/bioconductor-pd.mapping250k.nsp -recipes/bioconductor-pd.mapping250k.sty -recipes/bioconductor-pd.mapping50k.hind240 -recipes/bioconductor-pd.mapping50k.xba240 -recipes/bioconductor-pd.margene.1.0.st -recipes/bioconductor-pd.margene.1.1.st -recipes/bioconductor-pd.medgene.1.0.st -recipes/bioconductor-pd.medgene.1.1.st -recipes/bioconductor-pd.medicago -recipes/bioconductor-pd.mg.u74a -recipes/bioconductor-pd.mg.u74av2 -recipes/bioconductor-pd.mg.u74b -recipes/bioconductor-pd.mg.u74bv2 -recipes/bioconductor-pd.mg.u74c -recipes/bioconductor-pd.mg.u74cv2 -recipes/bioconductor-pd.mirna.1.0 -recipes/bioconductor-pd.mirna.2.0 -recipes/bioconductor-pd.mirna.3.0 -recipes/bioconductor-pd.mirna.3.1 -recipes/bioconductor-pd.mirna.4.0 -recipes/bioconductor-pd.moe430a -recipes/bioconductor-pd.moe430b -recipes/bioconductor-pd.moex.1.0.st.v1 -recipes/bioconductor-pd.mogene.1.0.st.v1 -recipes/bioconductor-pd.mogene.1.1.st.v1 -recipes/bioconductor-pd.mogene.2.0.st -recipes/bioconductor-pd.mogene.2.1.st -recipes/bioconductor-pd.mouse430.2 -recipes/bioconductor-pd.mouse430a.2 -recipes/bioconductor-pd.mta.1.0 -recipes/bioconductor-pd.mu11ksuba -recipes/bioconductor-pd.mu11ksubb -recipes/bioconductor-pd.nugo.hs1a520180 -recipes/bioconductor-pd.nugo.mm1a520177 -recipes/bioconductor-pd.ovigene.1.0.st -recipes/bioconductor-pd.ovigene.1.1.st -recipes/bioconductor-pd.pae.g1a -recipes/bioconductor-pd.plasmodium.anopheles -recipes/bioconductor-pd.poplar -recipes/bioconductor-pd.porcine -recipes/bioconductor-pd.porgene.1.0.st -recipes/bioconductor-pd.porgene.1.1.st -recipes/bioconductor-pd.rabgene.1.0.st -recipes/bioconductor-pd.rabgene.1.1.st -recipes/bioconductor-pd.rae230a -recipes/bioconductor-pd.rae230b -recipes/bioconductor-pd.raex.1.0.st.v1 -recipes/bioconductor-pd.ragene.1.0.st.v1 -recipes/bioconductor-pd.ragene.1.1.st.v1 -recipes/bioconductor-pd.ragene.2.0.st -recipes/bioconductor-pd.ragene.2.1.st -recipes/bioconductor-pd.rat230.2 -recipes/bioconductor-pd.rcngene.1.0.st -recipes/bioconductor-pd.rcngene.1.1.st -recipes/bioconductor-pd.rg.u34a -recipes/bioconductor-pd.rg.u34b -recipes/bioconductor-pd.rg.u34c -recipes/bioconductor-pd.rhegene.1.0.st -recipes/bioconductor-pd.rhegene.1.1.st -recipes/bioconductor-pd.rhesus -recipes/bioconductor-pd.rice -recipes/bioconductor-pd.rjpgene.1.0.st -recipes/bioconductor-pd.rjpgene.1.1.st -recipes/bioconductor-pd.rn.u34 -recipes/bioconductor-pd.rta.1.0 -recipes/bioconductor-pd.rusgene.1.0.st -recipes/bioconductor-pd.rusgene.1.1.st -recipes/bioconductor-pd.s.aureus -recipes/bioconductor-pd.soybean -recipes/bioconductor-pd.soygene.1.0.st -recipes/bioconductor-pd.soygene.1.1.st -recipes/bioconductor-pd.sugar.cane -recipes/bioconductor-pd.tomato -recipes/bioconductor-pd.u133.x3p -recipes/bioconductor-pd.vitis.vinifera -recipes/bioconductor-pd.wheat -recipes/bioconductor-pd.xenopus.laevis -recipes/bioconductor-pd.x.laevis.2 -recipes/bioconductor-pd.x.tropicalis -recipes/bioconductor-pd.yeast.2 -recipes/bioconductor-pd.yg.s98 -recipes/bioconductor-pd.zebgene.1.0.st -recipes/bioconductor-pd.zebgene.1.1.st -recipes/bioconductor-pd.zebrafish -recipes/bioconductor-peca -recipes/bioconductor-pedbarrayv10.db -recipes/bioconductor-pedbarrayv9.db -recipes/bioconductor-pepdat -recipes/bioconductor-pepstat -recipes/bioconductor-pfam.db +recipes/bioconductor-ihwpaper +recipes/bioconductor-rchyoptimyx +recipes/bioconductor-flowtype +recipes/bioconductor-rchemcpp + +# Needs a root5 rebuild +recipes/bioconductor-xps + +# Can't find libexpat +recipes/bioconductor-rtandem +recipes/bioconductor-sapfinder recipes/bioconductor-pga -recipes/bioconductor-pgsea -recipes/bioconductor-phantasus -recipes/bioconductor-pharmacogx -recipes/bioconductor-phastcons100way.ucsc.hg19 -recipes/bioconductor-phastcons100way.ucsc.hg38 -recipes/bioconductor-phastcons7way.ucsc.hg38 -recipes/bioconductor-phemd -recipes/bioconductor-phenopath -recipes/bioconductor-phenotest -recipes/bioconductor-phenstat -recipes/bioconductor-phyloseq -recipes/bioconductor-pi -recipes/bioconductor-piano -recipes/bioconductor-pics -recipes/bioconductor-pig.db0 -recipes/bioconductor-pigengene -recipes/bioconductor-ping -recipes/bioconductor-pipeframe -recipes/bioconductor-pkgdeptools -recipes/bioconductor-plasfia -recipes/bioconductor-plasmodiumanophelescdf -recipes/bioconductor-plasmodiumanophelesprobe -recipes/bioconductor-platecore -recipes/bioconductor-plethy -recipes/bioconductor-plgem -recipes/bioconductor-plier -recipes/bioconductor-plpe -recipes/bioconductor-plrs -recipes/bioconductor-plw -recipes/bioconductor-plyranges -recipes/bioconductor-pocrcannotation.db -recipes/bioconductor-podkat -recipes/bioconductor-pogos -recipes/bioconductor-polyester -recipes/bioconductor-polyfit -recipes/bioconductor-polyphen.hsapiens.dbsnp131 -recipes/bioconductor-poplarcdf -recipes/bioconductor-poplarprobe -recipes/bioconductor-porcinecdf -recipes/bioconductor-porcine.db -recipes/bioconductor-porcineprobe -recipes/bioconductor-post -recipes/bioconductor-potra -recipes/bioconductor-powerexplorer -recipes/bioconductor-ppidata -recipes/bioconductor-ppinfer -recipes/bioconductor-ppistats -recipes/bioconductor-pqsfinder -recipes/bioconductor-prada -recipes/bioconductor-pram -recipes/bioconductor-prebs -recipes/bioconductor-precisiontrialdrawer -recipes/bioconductor-preda -recipes/bioconductor-predasampledata -recipes/bioconductor-predictionet -recipes/bioconductor-primeviewcdf -recipes/bioconductor-primeviewprobe -recipes/bioconductor-primirtss -recipes/bioconductor-prince -recipes/bioconductor-probamr -recipes/bioconductor-probatch -recipes/bioconductor-procoil -recipes/bioconductor-prodata -recipes/bioconductor-profia -recipes/bioconductor-profileplyr -recipes/bioconductor-profilescoredist -recipes/bioconductor-progeny -recipes/bioconductor-projectr -recipes/bioconductor-proloc -recipes/bioconductor-prolocdata -recipes/bioconductor-prolocgui -recipes/bioconductor-promise -recipes/bioconductor-props -recipes/bioconductor-prostar -recipes/bioconductor-prostatecancercamcap -recipes/bioconductor-prostatecancergrasso -recipes/bioconductor-prostatecancerstockholm -recipes/bioconductor-prostatecancertaylor -recipes/bioconductor-prostatecancervarambally -recipes/bioconductor-prot2d -recipes/bioconductor-proteomicsannotationhubdata -recipes/bioconductor-proteomm +recipes/bioconductor-shinytandem recipes/bioconductor-proteoqc -recipes/bioconductor-psea -recipes/bioconductor-psichomics -recipes/bioconductor-psicquic -recipes/bioconductor-psygenet2r -recipes/bioconductor-pth2o2lipids -recipes/bioconductor-puma -recipes/bioconductor-pumadata -recipes/bioconductor-pvac -recipes/bioconductor-pvca -recipes/bioconductor-pviz -recipes/bioconductor-pwmenrich -recipes/bioconductor-pwmenrich.dmelanogaster.background -recipes/bioconductor-pwmenrich.hsapiens.background -recipes/bioconductor-pwmenrich.mmusculus.background -recipes/bioconductor-pwomics -recipes/bioconductor-qcmetrics -recipes/bioconductor-qdnaseq -recipes/bioconductor-qdnaseq.hg19 -recipes/bioconductor-qdnaseq.mm10 -recipes/bioconductor-qpcrnorm -recipes/bioconductor-qpgraph -recipes/bioconductor-qplexanalyzer -recipes/bioconductor-qplexdata -recipes/bioconductor-qrqc -recipes/bioconductor-qsea -recipes/bioconductor-qsmooth -recipes/bioconductor-qsutils -recipes/bioconductor-qualifier -recipes/bioconductor-quantro -recipes/bioconductor-quartpac -recipes/bioconductor-quasr -recipes/bioconductor-qusage -recipes/bioconductor-r10kcod.db -recipes/bioconductor-r3cpet -recipes/bioconductor-r3cseq -recipes/bioconductor-r453plus1toolbox -recipes/bioconductor-r4rna -recipes/bioconductor-rae230acdf -recipes/bioconductor-rae230a.db -recipes/bioconductor-rae230aprobe -recipes/bioconductor-rae230bcdf -recipes/bioconductor-rae230b.db -recipes/bioconductor-rae230bprobe -recipes/bioconductor-raex10stprobeset.db -recipes/bioconductor-raex10sttranscriptcluster.db -recipes/bioconductor-raexexonprobesetlocation -recipes/bioconductor-ragene10stprobeset.db -recipes/bioconductor-ragene10sttranscriptcluster.db -recipes/bioconductor-ragene10stv1cdf -recipes/bioconductor-ragene10stv1probe -recipes/bioconductor-ragene11stprobeset.db -recipes/bioconductor-ragene11sttranscriptcluster.db -recipes/bioconductor-ragene20stprobeset.db -recipes/bioconductor-ragene20sttranscriptcluster.db -recipes/bioconductor-ragene21stprobeset.db -recipes/bioconductor-ragene21sttranscriptcluster.db -recipes/bioconductor-raggedexperiment -recipes/bioconductor-rain -recipes/bioconductor-ramwas -recipes/bioconductor-randomwalkrestartmh -recipes/bioconductor-randpack -recipes/bioconductor-rarevariantvis -recipes/bioconductor-rariant -recipes/bioconductor-rat2302cdf -recipes/bioconductor-rat2302.db -recipes/bioconductor-rat2302frmavecs -recipes/bioconductor-rat2302probe -recipes/bioconductor-rat.db0 -recipes/bioconductor-rattoxfxcdf -recipes/bioconductor-rattoxfxprobe -recipes/bioconductor-rattus.norvegicus -recipes/bioconductor-rbcbook1 -recipes/bioconductor-rbgl -recipes/bioconductor-rbioinf -recipes/bioconductor-rbsurv -recipes/bioconductor-rcade -recipes/bioconductor-rcas -recipes/bioconductor-rcellminer -recipes/bioconductor-rcellminerdata -recipes/bioconductor-rcgh -recipes/bioconductor-rchemcpp -recipes/bioconductor-rchyoptimyx -recipes/bioconductor-rcistarget -recipes/bioconductor-rcm -recipes/bioconductor-rcpi + +# Needs to be patched to work with something other that gfortran +recipes/bioconductor-iclusterplus + +# Needs to have the source patched to look in ${PREFIX} for zlib +recipes/bioconductor-sictools + +# object ‘ebayes’ is not exported by 'namespace:limma' +recipes/bioconductor-charm +recipes/bioconductor-charmdata + +# Checks for the java version incorrectly, need to patch the source +recipes/bioconductor-msgfplus +recipes/bioconductor-msgfgui + +# openbabel error +recipes/bioconductor-chemmineob + +# Has issues finding sbml +recipes/bioconductor-rsbml +recipes/bioconductor-biggr + +# Installing package into $PREFIX/lib/R/library/00LOCK-work/00new (as "lib" is unspecified) +recipes/bioconductor-interactivedisplay + +# never completes +recipes/bioconductor-cancer + +# No methods found in package 'flowStats' for request: '%on%' when loading 'plateCore' +recipes/bioconductor-platecore + +# Error in library("FlowSorted.CordBlood.450k") : there is no package called 'FlowSorted.CordBlood.450k' +recipes/bioconductor-flowsorted.blood.450k +recipes/bioconductor-flowsorted.cordblood.450k +recipes/bioconductor-flowsorted.cordbloodnorway.450k + +# cwltool is not found recipes/bioconductor-rcwl recipes/bioconductor-rcwlpipelines -recipes/bioconductor-rcy3 -recipes/bioconductor-rcyjs -recipes/bioconductor-rdavidwebservice -recipes/bioconductor-reactome.db -recipes/bioconductor-reactomepa -recipes/bioconductor-readat -recipes/bioconductor-readqpcr -recipes/bioconductor-reb -recipes/bioconductor-recount -recipes/bioconductor-recoup -recipes/bioconductor-redseq -recipes/bioconductor-refnet -recipes/bioconductor-refplus -recipes/bioconductor-regioner -recipes/bioconductor-regionreport -recipes/bioconductor-regsplice -recipes/bioconductor-remp -recipes/bioconductor-repitools -recipes/bioconductor-reportingtools -recipes/bioconductor-repviz -recipes/bioconductor-reqon -recipes/bioconductor-restfulse -recipes/bioconductor-restfulsedata -recipes/bioconductor-rexposome -recipes/bioconductor-rforproteomics -recipes/bioconductor-rfpred -recipes/bioconductor-rgadem -recipes/bioconductor-rgalaxy -recipes/bioconductor-rgmql -recipes/bioconductor-rgraph2js -recipes/bioconductor-rgraphviz -recipes/bioconductor-rgreat -recipes/bioconductor-rgsea -recipes/bioconductor-rgsepd -recipes/bioconductor-rgu34acdf -recipes/bioconductor-rgu34a.db -recipes/bioconductor-rgu34aprobe -recipes/bioconductor-rgu34bcdf -recipes/bioconductor-rgu34b.db -recipes/bioconductor-rgu34bprobe -recipes/bioconductor-rgu34ccdf -recipes/bioconductor-rgu34c.db -recipes/bioconductor-rgu34cprobe -recipes/bioconductor-rguatlas4k.db -recipes/bioconductor-rgug4105a.db -recipes/bioconductor-rgug4130a.db -recipes/bioconductor-rgug4131a.db -recipes/bioconductor-rhdf5client -recipes/bioconductor-rhesuscdf -recipes/bioconductor-rhesus.db0 -recipes/bioconductor-rhesusprobe -recipes/bioconductor-rhisat2 -recipes/bioconductor-rhvdm -recipes/bioconductor-ri16cod.db -recipes/bioconductor-riboprofiling -recipes/bioconductor-riboseqr -recipes/bioconductor-ribosomaldatabaseproject11.5mgdb -recipes/bioconductor-ricecdf -recipes/bioconductor-riceprobe -recipes/bioconductor-ringo -recipes/bioconductor-ripseeker -recipes/bioconductor-ripseekerdata -recipes/bioconductor-risa -recipes/bioconductor-ritan -recipes/bioconductor-river -recipes/bioconductor-rjmcmcnucleosomes -recipes/bioconductor-rmagpie -recipes/bioconductor-rmassbank -recipes/bioconductor-rmat -recipes/bioconductor-rmir -recipes/bioconductor-rmir.hsa -recipes/bioconductor-rmir.hs.mirna -recipes/bioconductor-rmmquant -recipes/bioconductor-rnagilentdesign028282.db -recipes/bioconductor-rnainteract -recipes/bioconductor-rnainteractmapk -recipes/bioconductor-rnaither -recipes/bioconductor-rnaprobr -recipes/bioconductor-rnaseqmap -recipes/bioconductor-rnaseqr -recipes/bioconductor-rnaseqsamplesize -recipes/bioconductor-rnbeads -recipes/bioconductor-rnbeads.hg19 -recipes/bioconductor-rnbeads.hg38 -recipes/bioconductor-rnbeads.mm10 -recipes/bioconductor-rnbeads.mm9 -recipes/bioconductor-rnbeads.rn5 -recipes/bioconductor-rnits -recipes/bioconductor-rnu34cdf -recipes/bioconductor-rnu34.db -recipes/bioconductor-rnu34probe -recipes/bioconductor-roar -recipes/bioconductor-roberts2005annotation.db -recipes/bioconductor-roleswitch -recipes/bioconductor-rols -recipes/bioconductor-rontotools -recipes/bioconductor-ropls -recipes/bioconductor-rots -recipes/bioconductor-rpa -recipes/bioconductor-rpsixml -recipes/bioconductor-rqc -recipes/bioconductor-rqt -recipes/bioconductor-rqubic -recipes/bioconductor-rrbsdata -recipes/bioconductor-rrdp -recipes/bioconductor-rrdpdata -recipes/bioconductor-rsamtools -recipes/bioconductor-rsbml -recipes/bioconductor-rscudo -recipes/bioconductor-rsffreader -recipes/bioconductor-rsvsim -recipes/bioconductor-rta10probeset.db -recipes/bioconductor-rta10transcriptcluster.db -recipes/bioconductor-rtca -recipes/bioconductor-rtcgatoolbox -recipes/bioconductor-rtn -recipes/bioconductor-rtnduals -recipes/bioconductor-rtnsurvival -recipes/bioconductor-rtopper -recipes/bioconductor-rtreemix -recipes/bioconductor-rtrm -recipes/bioconductor-rtrmui -recipes/bioconductor-rtu34cdf -recipes/bioconductor-rtu34.db -recipes/bioconductor-rtu34probe -recipes/bioconductor-runibic -recipes/bioconductor-ruvcorr -recipes/bioconductor-ruvnormalize -recipes/bioconductor-ruvnormalizedata -recipes/bioconductor-ruvseq -recipes/bioconductor-rvs -recipes/bioconductor-rwgcod.db -recipes/bioconductor-s4vectors -recipes/bioconductor-safe -recipes/bioconductor-sagx -recipes/bioconductor-sampleclassifier -recipes/bioconductor-sampleclassifierdata -recipes/bioconductor-sangerseqr -recipes/bioconductor-saureuscdf -recipes/bioconductor-saureusprobe -recipes/bioconductor-sc3 -recipes/bioconductor-scale4c -recipes/bioconductor-scalign -recipes/bioconductor-scan.upc -recipes/bioconductor-scater -recipes/bioconductor-scdd -recipes/bioconductor-scde -recipes/bioconductor-scds -recipes/bioconductor-scfind -recipes/bioconductor-scisi -recipes/bioconductor-scmap -recipes/bioconductor-scmerge -recipes/bioconductor-scmeth -recipes/bioconductor-scnorm -recipes/bioconductor-scone -recipes/bioconductor-sconify -recipes/bioconductor-scoreinvhap -recipes/bioconductor-scpipe -recipes/bioconductor-scran -recipes/bioconductor-scrnaseq -recipes/bioconductor-scruff -recipes/bioconductor-scsr -recipes/bioconductor-sctensor -recipes/bioconductor-sdams -recipes/bioconductor-segmentseq -recipes/bioconductor-selex -recipes/bioconductor-semdist -recipes/bioconductor-sepa -recipes/bioconductor-seq2pathway -recipes/bioconductor-seqarray -recipes/bioconductor-seqbias -recipes/bioconductor-seqc -recipes/bioconductor-seqcat -recipes/bioconductor-seqcombo -recipes/bioconductor-seqgsea -recipes/bioconductor-seqpattern -recipes/bioconductor-seqplots -recipes/bioconductor-seqsetvis -recipes/bioconductor-seqsqc -recipes/bioconductor-seqvartools -recipes/bioconductor-sesame -recipes/bioconductor-sesamedata -recipes/bioconductor-sevenbridges -recipes/bioconductor-sevenc -recipes/bioconductor-sgseq -recipes/bioconductor-shdz.db -recipes/bioconductor-shinymethyl -recipes/bioconductor-shortread -recipes/bioconductor-siamcat -recipes/bioconductor-sictools -recipes/bioconductor-sift.hsapiens.dbsnp132 -recipes/bioconductor-sift.hsapiens.dbsnp137 -recipes/bioconductor-sigar -recipes/bioconductor-sigcheck -recipes/bioconductor-sigfeature -recipes/bioconductor-sigfuge -recipes/bioconductor-siggenes -recipes/bioconductor-signer -recipes/bioconductor-signet -recipes/bioconductor-sigsquared -recipes/bioconductor-silva128.1mgdb -recipes/bioconductor-sim -recipes/bioconductor-simat -recipes/bioconductor-simbindprofiles -recipes/bioconductor-simpleaffy -recipes/bioconductor-simulatorz -recipes/bioconductor-singlecellexperiment -recipes/bioconductor-singlecelltk -recipes/bioconductor-singscore -recipes/bioconductor-sispa -recipes/bioconductor-skewr -recipes/bioconductor-slalom -recipes/bioconductor-slgi -recipes/bioconductor-slingshot -recipes/bioconductor-slinky -recipes/bioconductor-smite -recipes/bioconductor-snadata -recipes/bioconductor-snapcgh -recipes/bioconductor-snpchip -recipes/bioconductor-snphood -recipes/bioconductor-snplocs.hsapiens.dbsnp141.grch38 -recipes/bioconductor-snplocs.hsapiens.dbsnp142.grch37 -recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37 -recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38 -recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38 -recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38 -recipes/bioconductor-snplocs.hsapiens.dbsnp151.grch38 -recipes/bioconductor-snplocs.hsapiens.dbsnp.20101109 -recipes/bioconductor-snplocs.hsapiens.dbsnp.20120608 -recipes/bioconductor-snpstats -recipes/bioconductor-soggi -recipes/bioconductor-somaticcanceralterations -recipes/bioconductor-somaticsignatures -recipes/bioconductor-soybeancdf -recipes/bioconductor-soybeanprobe -recipes/bioconductor-spacepac -recipes/bioconductor-sparsesignatures -recipes/bioconductor-spatialcpie -recipes/bioconductor-specond -recipes/bioconductor-spectraltad -recipes/bioconductor-spem -recipes/bioconductor-spia -recipes/bioconductor-spidermir -recipes/bioconductor-spikein -recipes/bioconductor-spikeinsubset -recipes/bioconductor-spktools -recipes/bioconductor-splatter -recipes/bioconductor-splicegear -recipes/bioconductor-splicesites -recipes/bioconductor-splicinggraphs -recipes/bioconductor-splinetimer -recipes/bioconductor-splinter -recipes/bioconductor-sponge -recipes/bioconductor-sracipe -recipes/bioconductor-sradb -recipes/bioconductor-srgnet -recipes/bioconductor-srnadiff -recipes/bioconductor-sscore -recipes/bioconductor-sscu -recipes/bioconductor-ssviz -recipes/bioconductor-stager -recipes/bioconductor-stan -recipes/bioconductor-starank -recipes/bioconductor-starbiotrek -recipes/bioconductor-starr -recipes/bioconductor-stategra -recipes/bioconductor-strandcheckr -recipes/bioconductor-streamer -recipes/bioconductor-stroma4 -recipes/bioconductor-structstrings -recipes/bioconductor-structuralvariantannotation -recipes/bioconductor-subseq -recipes/bioconductor-sugarcanecdf -recipes/bioconductor-sugarcaneprobe -recipes/bioconductor-summarizedbenchmark -recipes/bioconductor-summarizedexperiment -recipes/bioconductor-survtype -recipes/bioconductor-sushi -recipes/bioconductor-sva -recipes/bioconductor-svaplsseq -recipes/bioconductor-svm2crm -recipes/bioconductor-swath2stats -recipes/bioconductor-switchde -recipes/bioconductor-synapter -recipes/bioconductor-synapterdata -recipes/bioconductor-synmut -recipes/bioconductor-systempiper -recipes/bioconductor-systempiperdata -recipes/bioconductor-tabulamurisdata -recipes/bioconductor-targetscan.hs.eg.db -recipes/bioconductor-targetscan.mm.eg.db -recipes/bioconductor-tarseqqc -recipes/bioconductor-tbx20bamsubset -recipes/bioconductor-tcc -recipes/bioconductor-tcgabiolinks -recipes/bioconductor-tcgabiolinksgui -recipes/bioconductor-tcgacrcmirna -recipes/bioconductor-tcgacrcmrna -recipes/bioconductor-tcgautils -recipes/bioconductor-tcgawgbsdata.hg19 -recipes/bioconductor-tcgaworkflowdata -recipes/bioconductor-tcseq -recipes/bioconductor-tdaracne -recipes/bioconductor-tenxbraindata -recipes/bioconductor-tenxpbmcdata -recipes/bioconductor-tenxplore -recipes/bioconductor-teqc -recipes/bioconductor-test1cdf -recipes/bioconductor-test2cdf -recipes/bioconductor-test3cdf -recipes/bioconductor-test3probe -recipes/bioconductor-tfarm -recipes/bioconductor-tfbstools -recipes/bioconductor-tfea.chip -recipes/bioconductor-tfhaz -recipes/bioconductor-tigre -recipes/bioconductor-tilingarray -recipes/bioconductor-timecourse -recipes/bioconductor-timeseriesexperiment -recipes/bioconductor-tin -recipes/bioconductor-tinesath1probe -recipes/bioconductor-tissueenrich -recipes/bioconductor-titancna -recipes/bioconductor-tmixclust -recipes/bioconductor-tnbc.cms -recipes/bioconductor-tnt -recipes/bioconductor-tomatocdf -recipes/bioconductor-tomatoprobe -recipes/bioconductor-topaseq -recipes/bioconductor-topdownr -recipes/bioconductor-topdownrdata -recipes/bioconductor-topgo -recipes/bioconductor-tpp -recipes/bioconductor-tracktables -recipes/bioconductor-trackviewer -recipes/bioconductor-transcriptogramer -recipes/bioconductor-transcriptr -recipes/bioconductor-transite -recipes/bioconductor-translatome -recipes/bioconductor-transview -recipes/bioconductor-traser -recipes/bioconductor-treesummarizedexperiment -recipes/bioconductor-trena -recipes/bioconductor-trendy -recipes/bioconductor-triform -recipes/bioconductor-trigger -recipes/bioconductor-trio -recipes/bioconductor-triplex -recipes/bioconductor-trna -recipes/bioconductor-trnadbimport -recipes/bioconductor-trnascanimport -recipes/bioconductor-tronco -recipes/bioconductor-tspair -recipes/bioconductor-tsrchitect -recipes/bioconductor-tssi -recipes/bioconductor-ttmap -recipes/bioconductor-turbonorm -recipes/bioconductor-tvtb -recipes/bioconductor-tweedeseqcountdata -recipes/bioconductor-twilight -recipes/bioconductor-twoddpcr -recipes/bioconductor-txdb.athaliana.biomart.plantsmart22 -recipes/bioconductor-txdb.athaliana.biomart.plantsmart25 -recipes/bioconductor-txdb.athaliana.biomart.plantsmart28 -recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene -recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene -recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene -recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene -recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene -recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene -recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene -recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene -recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene -recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene -recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene -recipes/bioconductor-txdb.hsapiens.biomart.igis -recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene -recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene -recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts -recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene -recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene -recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene -recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene -recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene -recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene -recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene -recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene -recipes/bioconductor-txdb.rnorvegicus.biomart.igis -recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene -recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene -recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene -recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene -recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene -recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene -recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene -recipes/bioconductor-tximeta -recipes/bioconductor-txreginfra -recipes/bioconductor-u133aaofav2cdf -recipes/bioconductor-u133x3pcdf -recipes/bioconductor-u133x3p.db -recipes/bioconductor-u133x3pprobe -recipes/bioconductor-ularcirc -recipes/bioconductor-undo -recipes/bioconductor-unifiedwmwqpcr -recipes/bioconductor-uniprot.ws -recipes/bioconductor-uniquorn -recipes/bioconductor-universalmotif -recipes/bioconductor-usort -recipes/bioconductor-vanillaice -recipes/bioconductor-variancepartition -recipes/bioconductor-variantfiltering -recipes/bioconductor-varianttools -recipes/bioconductor-varianttoolsdata -recipes/bioconductor-vcfarray -recipes/bioconductor-vegamc -recipes/bioconductor-vidger -recipes/bioconductor-viper -recipes/bioconductor-vitisviniferacdf -recipes/bioconductor-vitisviniferaprobe -recipes/bioconductor-vsn -recipes/bioconductor-vtpnet -recipes/bioconductor-vulcan -recipes/bioconductor-watermelon -recipes/bioconductor-wavcluster -recipes/bioconductor-wavetiling -recipes/bioconductor-webbioc -recipes/bioconductor-wheatcdf -recipes/bioconductor-wheatprobe -recipes/bioconductor-wiggleplotr -recipes/bioconductor-worm.db0 -recipes/bioconductor-xbseq -recipes/bioconductor-xcms -recipes/bioconductor-xde -recipes/bioconductor-xenopus.db0 -recipes/bioconductor-xenopuslaeviscdf -recipes/bioconductor-xenopuslaevisprobe -recipes/bioconductor-xeva -recipes/bioconductor-xhybcasneuf -recipes/bioconductor-xina -recipes/bioconductor-xlaevis2cdf -recipes/bioconductor-xlaevis2probe -recipes/bioconductor-xlaevis.db -recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp141.grch38 -recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37 -recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38 -recipes/bioconductor-xtropicaliscdf -recipes/bioconductor-xtropicalisprobe -recipes/bioconductor-xvector -recipes/bioconductor-yamss -recipes/bioconductor-yapsa -recipes/bioconductor-yaqcaffy -recipes/bioconductor-yarn -recipes/bioconductor-ye6100subacdf -recipes/bioconductor-ye6100subbcdf -recipes/bioconductor-ye6100subccdf -recipes/bioconductor-ye6100subdcdf -recipes/bioconductor-yeast2cdf -recipes/bioconductor-yeast2.db -recipes/bioconductor-yeast2probe -recipes/bioconductor-yeastcc -recipes/bioconductor-yeast.db0 -recipes/bioconductor-yeastexpdata -recipes/bioconductor-ygs98cdf -recipes/bioconductor-ygs98.db -recipes/bioconductor-ygs98probe -recipes/bioconductor-yri1kgv -recipes/bioconductor-yrimulti -recipes/bioconductor-zebrafishcdf -recipes/bioconductor-zebrafish.db -recipes/bioconductor-zebrafish.db0 -recipes/bioconductor-zebrafishprobe -recipes/bioconductor-zfpkm -recipes/bioconductor-zinbwave + +# unable to load shared object '$PREFIX/lib/R/library/sf/libs/sf.so': libtiledb.so.1.6.0: cannot open shared object file +recipes/bioconductor-anamir diff --git a/recipes/bioconductor-a4/meta.yaml b/recipes/bioconductor-a4/meta.yaml index d9d1dbf30fb6d..4fe1e7c48fcff 100644 --- a/recipes/bioconductor-a4/meta.yaml +++ b/recipes/bioconductor-a4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 00e7562c4412f2a31b54919b66137388 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-a4base/meta.yaml b/recipes/bioconductor-a4base/meta.yaml index 39916fb8498db..4eb55414744fe 100644 --- a/recipes/bioconductor-a4base/meta.yaml +++ b/recipes/bioconductor-a4base/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 077a2873fd1bea468bc86307a1eee4e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-a4classif/meta.yaml b/recipes/bioconductor-a4classif/meta.yaml index dfb7bdaf5045a..0d5754a36165a 100644 --- a/recipes/bioconductor-a4classif/meta.yaml +++ b/recipes/bioconductor-a4classif/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c194b90cc4d80c9d589d6c1269ac4da2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-a4core/meta.yaml b/recipes/bioconductor-a4core/meta.yaml index 56c6e345d6b57..30e43af4ed30c 100644 --- a/recipes/bioconductor-a4core/meta.yaml +++ b/recipes/bioconductor-a4core/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0764afbd62979e811eaf99fda4807e15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-a4preproc/meta.yaml b/recipes/bioconductor-a4preproc/meta.yaml index 85836c4d307e3..288a0380e9794 100644 --- a/recipes/bioconductor-a4preproc/meta.yaml +++ b/recipes/bioconductor-a4preproc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f28197ecba4a5696660442d33aa6638d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-a4reporting/meta.yaml b/recipes/bioconductor-a4reporting/meta.yaml index 5d80fc980a701..858fc542143ad 100644 --- a/recipes/bioconductor-a4reporting/meta.yaml +++ b/recipes/bioconductor-a4reporting/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c37278b81f6909876a48043145cbdacc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-abadata/meta.yaml b/recipes/bioconductor-abadata/meta.yaml index f188da61b39aa..f305155a83533 100644 --- a/recipes/bioconductor-abadata/meta.yaml +++ b/recipes/bioconductor-abadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 14527790b75fc139b5bbed7981c1a1ea build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-abadata/post-link.sh b/recipes/bioconductor-abadata/post-link.sh index a9a53fcc1c885..96182f43e7300 100644 --- a/recipes/bioconductor-abadata/post-link.sh +++ b/recipes/bioconductor-abadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ABAData_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/ABAData_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-abadata/bioconductor-abadata_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-abadata/bioconductor-abadata_1.14.0_src_all.tar.gz" ) MD5="14527790b75fc139b5bbed7981c1a1ea" diff --git a/recipes/bioconductor-abaenrichment/meta.yaml b/recipes/bioconductor-abaenrichment/meta.yaml index cb809e652c75e..8c032cdee5abd 100644 --- a/recipes/bioconductor-abaenrichment/meta.yaml +++ b/recipes/bioconductor-abaenrichment/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1a51e6bb3d1686f966c8a12ce6e08c9f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-abarray/meta.yaml b/recipes/bioconductor-abarray/meta.yaml index b161992225c13..1b4d2712eda43 100644 --- a/recipes/bioconductor-abarray/meta.yaml +++ b/recipes/bioconductor-abarray/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 549b89684d9e319caac557f517acc7e3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-abseqr/meta.yaml b/recipes/bioconductor-abseqr/meta.yaml index 15cb1cf9e4fae..675e2453b48c6 100644 --- a/recipes/bioconductor-abseqr/meta.yaml +++ b/recipes/bioconductor-abseqr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a1cf442849ec89bc9937730094727705 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -40,7 +40,6 @@ requirements: - r-stringr - r-vegan - r-venndiagram - - pandoc >=1.19.2.1 run: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' - 'bioconductor-biocstyle >=2.12.0,<2.13.0' @@ -61,7 +60,6 @@ requirements: - r-stringr - r-vegan - r-venndiagram - - pandoc >=1.19.2.1 test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-absseq/meta.yaml b/recipes/bioconductor-absseq/meta.yaml index 8d8cc01a6df64..533b7c2c5e182 100644 --- a/recipes/bioconductor-absseq/meta.yaml +++ b/recipes/bioconductor-absseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3b22e021c165c711734201fe2d8c9503 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-acde/meta.yaml b/recipes/bioconductor-acde/meta.yaml index 10d2875d99772..bbf918897f4c7 100644 --- a/recipes/bioconductor-acde/meta.yaml +++ b/recipes/bioconductor-acde/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5bca02d14050dab364619ac2f3fc1dd0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ace/meta.yaml b/recipes/bioconductor-ace/meta.yaml index 5c5b3499ef47b..1597d52a9b61a 100644 --- a/recipes/bioconductor-ace/meta.yaml +++ b/recipes/bioconductor-ace/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6190b52169f64b8372c05c2c920a2e55 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-acgh/meta.yaml b/recipes/bioconductor-acgh/meta.yaml index d43ac499b80fa..db50ae3d50f48 100644 --- a/recipes/bioconductor-acgh/meta.yaml +++ b/recipes/bioconductor-acgh/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: be0bef86c5af1ecdb9c23f26dcea7595 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-acme/meta.yaml b/recipes/bioconductor-acme/meta.yaml index aa3b465eea6a7..ae1e073a2c17a 100644 --- a/recipes/bioconductor-acme/meta.yaml +++ b/recipes/bioconductor-acme/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dda3b6d9d427487387d71d30ec8ac676 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-adacgh2/meta.yaml b/recipes/bioconductor-adacgh2/meta.yaml index 7bd9fe1dbfee6..a430a810deb1e 100644 --- a/recipes/bioconductor-adacgh2/meta.yaml +++ b/recipes/bioconductor-adacgh2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 61c8ba54a1304c9c18fc0d47b8d75dae build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-adam/meta.yaml b/recipes/bioconductor-adam/meta.yaml index 7761f3009962a..8b0c11842f23f 100644 --- a/recipes/bioconductor-adam/meta.yaml +++ b/recipes/bioconductor-adam/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d35a54f2e960ec7a7ec8f6f8f9a2e54 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-adamgui/meta.yaml b/recipes/bioconductor-adamgui/meta.yaml index ce6c5bb56efb1..de73ba60c7ea2 100644 --- a/recipes/bioconductor-adamgui/meta.yaml +++ b/recipes/bioconductor-adamgui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1c158e0c42e546c9f3eba19fb76a486a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-adaptest/meta.yaml b/recipes/bioconductor-adaptest/meta.yaml index 57bec680b2f28..66d6673b0a878 100644 --- a/recipes/bioconductor-adaptest/meta.yaml +++ b/recipes/bioconductor-adaptest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 01ac7bda196917f184b581d772f2b112 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-adductdata/meta.yaml b/recipes/bioconductor-adductdata/meta.yaml index 56f295f881662..202de18be36ed 100644 --- a/recipes/bioconductor-adductdata/meta.yaml +++ b/recipes/bioconductor-adductdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ee38a871976b2c0f4eba667771f3b3a0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-adductdata/post-link.sh b/recipes/bioconductor-adductdata/post-link.sh index fccfc82a0537c..14ef88728a902 100644 --- a/recipes/bioconductor-adductdata/post-link.sh +++ b/recipes/bioconductor-adductdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/adductData_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/adductData_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-adductdata/bioconductor-adductdata_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-adductdata/bioconductor-adductdata_1.0.0_src_all.tar.gz" ) MD5="ee38a871976b2c0f4eba667771f3b3a0" diff --git a/recipes/bioconductor-adductomicsr/meta.yaml b/recipes/bioconductor-adductomicsr/meta.yaml index a848d13ebf4d5..ec7aaba7889f5 100644 --- a/recipes/bioconductor-adductomicsr/meta.yaml +++ b/recipes/bioconductor-adductomicsr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f46d8533250c8bb1e9c5c85409c1b96d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-adme16cod.db/meta.yaml b/recipes/bioconductor-adme16cod.db/meta.yaml index 24327cf4dbfd1..1bac2cf6cad76 100644 --- a/recipes/bioconductor-adme16cod.db/meta.yaml +++ b/recipes/bioconductor-adme16cod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3902516a40a503302ef732143b2394b9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-adsplit/meta.yaml b/recipes/bioconductor-adsplit/meta.yaml index 03cfd2373398e..9b71304c208e0 100644 --- a/recipes/bioconductor-adsplit/meta.yaml +++ b/recipes/bioconductor-adsplit/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a392edf9d83df7654bce88050c3d9a61 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affixcan/meta.yaml b/recipes/bioconductor-affixcan/meta.yaml index d10bf3a42fb78..c2d620b825f9d 100644 --- a/recipes/bioconductor-affixcan/meta.yaml +++ b/recipes/bioconductor-affixcan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1ecf671ff853da1943fa93927c9a84d9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affxparser/meta.yaml b/recipes/bioconductor-affxparser/meta.yaml index e6adf7a797d8a..9e2b494c0e31e 100644 --- a/recipes/bioconductor-affxparser/meta.yaml +++ b/recipes/bioconductor-affxparser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 27535bccec824509ea79df83a641e32d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affy/meta.yaml b/recipes/bioconductor-affy/meta.yaml index b0c0fbd50c8eb..574abf15df172 100644 --- a/recipes/bioconductor-affy/meta.yaml +++ b/recipes/bioconductor-affy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0eb552db00c271587a6736744dfa0218 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affycomp/meta.yaml b/recipes/bioconductor-affycomp/meta.yaml index 3af261350c3d4..edfd81ac075fc 100644 --- a/recipes/bioconductor-affycomp/meta.yaml +++ b/recipes/bioconductor-affycomp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2e6ae6a236b15e9d2fd7f376611e4841 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affycompatible/meta.yaml b/recipes/bioconductor-affycompatible/meta.yaml index 002f5217656a3..ec507902d1981 100644 --- a/recipes/bioconductor-affycompatible/meta.yaml +++ b/recipes/bioconductor-affycompatible/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 997af0dcfd3582138684f9d81580588b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affycompdata/meta.yaml b/recipes/bioconductor-affycompdata/meta.yaml index 8819e27313f20..1c6062d99f45d 100644 --- a/recipes/bioconductor-affycompdata/meta.yaml +++ b/recipes/bioconductor-affycompdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a334dbc9b6dc766a2f496d967de5e918 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affycompdata/post-link.sh b/recipes/bioconductor-affycompdata/post-link.sh index 328b20d800413..2716d1792eb8c 100644 --- a/recipes/bioconductor-affycompdata/post-link.sh +++ b/recipes/bioconductor-affycompdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/affycompData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/affycompData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-affycompdata/bioconductor-affycompdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-affycompdata/bioconductor-affycompdata_1.22.0_src_all.tar.gz" ) MD5="a334dbc9b6dc766a2f496d967de5e918" diff --git a/recipes/bioconductor-affycontam/meta.yaml b/recipes/bioconductor-affycontam/meta.yaml index 2986202d84ab4..3a19c1c485588 100644 --- a/recipes/bioconductor-affycontam/meta.yaml +++ b/recipes/bioconductor-affycontam/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 39f0ab0f6b0ae300d20a01ff7bb67a55 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affycoretools/meta.yaml b/recipes/bioconductor-affycoretools/meta.yaml index c988583b91346..14e24de317806 100644 --- a/recipes/bioconductor-affycoretools/meta.yaml +++ b/recipes/bioconductor-affycoretools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ce4c6af2de95858a0223ca0fc00c0fca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affydata/meta.yaml b/recipes/bioconductor-affydata/meta.yaml index cdf0b6158d53f..4eab86688b904 100644 --- a/recipes/bioconductor-affydata/meta.yaml +++ b/recipes/bioconductor-affydata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a37af61d647439e98b7b03e7fe349ca1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affydata/post-link.sh b/recipes/bioconductor-affydata/post-link.sh index 08ce8a4f95a34..bea3f5162f14d 100644 --- a/recipes/bioconductor-affydata/post-link.sh +++ b/recipes/bioconductor-affydata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/affydata_1.32.0.tar.gz" "https://bioarchive.galaxyproject.org/affydata_1.32.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-affydata/bioconductor-affydata_1.32.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-affydata/bioconductor-affydata_1.32.0_src_all.tar.gz" ) MD5="a37af61d647439e98b7b03e7fe349ca1" diff --git a/recipes/bioconductor-affyexpress/meta.yaml b/recipes/bioconductor-affyexpress/meta.yaml index 1cd5d7f086543..598b9b2c601d6 100644 --- a/recipes/bioconductor-affyexpress/meta.yaml +++ b/recipes/bioconductor-affyexpress/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 428dc21416445e4ca92bbe44502f26a7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affyhgu133a2expr/meta.yaml b/recipes/bioconductor-affyhgu133a2expr/meta.yaml index 6bd6a2fb9c05a..b1cb763e6b455 100644 --- a/recipes/bioconductor-affyhgu133a2expr/meta.yaml +++ b/recipes/bioconductor-affyhgu133a2expr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1eab8a17b6f940ee9d980b39ac66874b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affyhgu133a2expr/post-link.sh b/recipes/bioconductor-affyhgu133a2expr/post-link.sh index 047d9cd8eefef..e52db8f6cef97 100644 --- a/recipes/bioconductor-affyhgu133a2expr/post-link.sh +++ b/recipes/bioconductor-affyhgu133a2expr/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Affyhgu133A2Expr_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/Affyhgu133A2Expr_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-affyhgu133a2expr/bioconductor-affyhgu133a2expr_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-affyhgu133a2expr/bioconductor-affyhgu133a2expr_1.20.0_src_all.tar.gz" ) MD5="1eab8a17b6f940ee9d980b39ac66874b" diff --git a/recipes/bioconductor-affyhgu133aexpr/meta.yaml b/recipes/bioconductor-affyhgu133aexpr/meta.yaml index a76ebef89af84..5c1ca0860c780 100644 --- a/recipes/bioconductor-affyhgu133aexpr/meta.yaml +++ b/recipes/bioconductor-affyhgu133aexpr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 39428013cde8719e8b487042fdea7f47 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affyhgu133aexpr/post-link.sh b/recipes/bioconductor-affyhgu133aexpr/post-link.sh index 122e2ac7cd5f8..99f2af201806e 100644 --- a/recipes/bioconductor-affyhgu133aexpr/post-link.sh +++ b/recipes/bioconductor-affyhgu133aexpr/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Affyhgu133aExpr_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/Affyhgu133aExpr_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-affyhgu133aexpr/bioconductor-affyhgu133aexpr_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-affyhgu133aexpr/bioconductor-affyhgu133aexpr_1.22.0_src_all.tar.gz" ) MD5="39428013cde8719e8b487042fdea7f47" diff --git a/recipes/bioconductor-affyhgu133plus2expr/meta.yaml b/recipes/bioconductor-affyhgu133plus2expr/meta.yaml index a27999db95371..17a5213cf3754 100644 --- a/recipes/bioconductor-affyhgu133plus2expr/meta.yaml +++ b/recipes/bioconductor-affyhgu133plus2expr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1d335aef3a0fb1371144a6f81e70fa4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affyhgu133plus2expr/post-link.sh b/recipes/bioconductor-affyhgu133plus2expr/post-link.sh index 1f065607577c6..e1ec8afd832af 100644 --- a/recipes/bioconductor-affyhgu133plus2expr/post-link.sh +++ b/recipes/bioconductor-affyhgu133plus2expr/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Affyhgu133Plus2Expr_1.18.0.tar.gz" "https://bioarchive.galaxyproject.org/Affyhgu133Plus2Expr_1.18.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-affyhgu133plus2expr/bioconductor-affyhgu133plus2expr_1.18.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-affyhgu133plus2expr/bioconductor-affyhgu133plus2expr_1.18.0_src_all.tar.gz" ) MD5="f1d335aef3a0fb1371144a6f81e70fa4" diff --git a/recipes/bioconductor-affyilm/meta.yaml b/recipes/bioconductor-affyilm/meta.yaml index d36ca74659dee..fecc21e9a51c0 100644 --- a/recipes/bioconductor-affyilm/meta.yaml +++ b/recipes/bioconductor-affyilm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1d882d602cf45f48b6ccec53d761dc31 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affyio/meta.yaml b/recipes/bioconductor-affyio/meta.yaml index b3cb6aa620ee7..ae935c3e841c9 100644 --- a/recipes/bioconductor-affyio/meta.yaml +++ b/recipes/bioconductor-affyio/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4a115565876093c68f17dc28c9274592 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affylmgui/meta.yaml b/recipes/bioconductor-affylmgui/meta.yaml index 20bfc84627384..354c6e1924332 100644 --- a/recipes/bioconductor-affylmgui/meta.yaml +++ b/recipes/bioconductor-affylmgui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6cf0ca5e075473d5e96e59febe8f630c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affymetrixdatatestfiles/meta.yaml b/recipes/bioconductor-affymetrixdatatestfiles/meta.yaml index 9b92d8b9ffe3c..e05a67a121436 100644 --- a/recipes/bioconductor-affymetrixdatatestfiles/meta.yaml +++ b/recipes/bioconductor-affymetrixdatatestfiles/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c2cdbf27e487b9877c00fb8c60e22959 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affymetrixdatatestfiles/post-link.sh b/recipes/bioconductor-affymetrixdatatestfiles/post-link.sh index b7988ce02dcdd..02754b2d2990a 100644 --- a/recipes/bioconductor-affymetrixdatatestfiles/post-link.sh +++ b/recipes/bioconductor-affymetrixdatatestfiles/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/AffymetrixDataTestFiles_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/AffymetrixDataTestFiles_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-affymetrixdatatestfiles/bioconductor-affymetrixdatatestfiles_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-affymetrixdatatestfiles/bioconductor-affymetrixdatatestfiles_0.22.0_src_all.tar.gz" ) MD5="c2cdbf27e487b9877c00fb8c60e22959" diff --git a/recipes/bioconductor-affymoe4302expr/meta.yaml b/recipes/bioconductor-affymoe4302expr/meta.yaml index 4998a35961d7d..4260ed6277035 100644 --- a/recipes/bioconductor-affymoe4302expr/meta.yaml +++ b/recipes/bioconductor-affymoe4302expr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f9c8f9273ae064ffc30074388b43f8ed build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affymoe4302expr/post-link.sh b/recipes/bioconductor-affymoe4302expr/post-link.sh index 1a9cc217d0609..a4b6fa0db12aa 100644 --- a/recipes/bioconductor-affymoe4302expr/post-link.sh +++ b/recipes/bioconductor-affymoe4302expr/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Affymoe4302Expr_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/Affymoe4302Expr_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-affymoe4302expr/bioconductor-affymoe4302expr_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-affymoe4302expr/bioconductor-affymoe4302expr_1.22.0_src_all.tar.gz" ) MD5="f9c8f9273ae064ffc30074388b43f8ed" diff --git a/recipes/bioconductor-affypara/meta.yaml b/recipes/bioconductor-affypara/meta.yaml index 755fd394aa4d6..99d0156335b68 100644 --- a/recipes/bioconductor-affypara/meta.yaml +++ b/recipes/bioconductor-affypara/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0b8f11ce29ec0e877c3b010974975502 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affypdnn/meta.yaml b/recipes/bioconductor-affypdnn/meta.yaml index 009b48b571335..e7af3fd53ab45 100644 --- a/recipes/bioconductor-affypdnn/meta.yaml +++ b/recipes/bioconductor-affypdnn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3bdf72549b4a89495ee30df5b025338f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affyplm/meta.yaml b/recipes/bioconductor-affyplm/meta.yaml index 61fdde53a8d4f..7ee42897fb053 100644 --- a/recipes/bioconductor-affyplm/meta.yaml +++ b/recipes/bioconductor-affyplm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8070d4cba459fb7998c26c3d7c0ed571 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affyqcreport/meta.yaml b/recipes/bioconductor-affyqcreport/meta.yaml index 5df91e0d1d2d4..25f9717f86799 100644 --- a/recipes/bioconductor-affyqcreport/meta.yaml +++ b/recipes/bioconductor-affyqcreport/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: de5e5962fb74cd0b4deed0ebc0898b88 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-affyrnadegradation/meta.yaml b/recipes/bioconductor-affyrnadegradation/meta.yaml index 51c76dc6f3a88..358b51d94d844 100644 --- a/recipes/bioconductor-affyrnadegradation/meta.yaml +++ b/recipes/bioconductor-affyrnadegradation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bd6cf71aecceb26a25b7b6b8a4e651a1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ag.db/meta.yaml b/recipes/bioconductor-ag.db/meta.yaml index 50a6814d6a4d6..8131bbd749f02 100644 --- a/recipes/bioconductor-ag.db/meta.yaml +++ b/recipes/bioconductor-ag.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e5913da38fe4487202306cacd885840d build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-agcdf/meta.yaml b/recipes/bioconductor-agcdf/meta.yaml index ba7af64aad11b..df24b3d56762e 100644 --- a/recipes/bioconductor-agcdf/meta.yaml +++ b/recipes/bioconductor-agcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5dd14bc6a6d2729f5e7b170105c78e48 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-agdex/meta.yaml b/recipes/bioconductor-agdex/meta.yaml index c60d78dfed188..ecf91b50360a6 100644 --- a/recipes/bioconductor-agdex/meta.yaml +++ b/recipes/bioconductor-agdex/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eef4f67c480d45fa194afd886da71abc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-agilp/meta.yaml b/recipes/bioconductor-agilp/meta.yaml index 373f7f92fc3ef..4896947833149 100644 --- a/recipes/bioconductor-agilp/meta.yaml +++ b/recipes/bioconductor-agilp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1445a40d1bf7d80b5c2b32b093dac65b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-agimicrorna/meta.yaml b/recipes/bioconductor-agimicrorna/meta.yaml index dc5f495702ea8..ac3b105ac1162 100644 --- a/recipes/bioconductor-agimicrorna/meta.yaml +++ b/recipes/bioconductor-agimicrorna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4a07273782f1b205dddbb221aeae7c7c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-agprobe/meta.yaml b/recipes/bioconductor-agprobe/meta.yaml index 6446be6f5cc22..763d93e34e4c5 100644 --- a/recipes/bioconductor-agprobe/meta.yaml +++ b/recipes/bioconductor-agprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 08f7527d4c8a30d8b2f86016a53f075a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ahcytobands/meta.yaml b/recipes/bioconductor-ahcytobands/meta.yaml index 51a23e6c33e8d..85db866608dee 100644 --- a/recipes/bioconductor-ahcytobands/meta.yaml +++ b/recipes/bioconductor-ahcytobands/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 87b801fe5699cae422a661711272c0a2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ahensdbs/meta.yaml b/recipes/bioconductor-ahensdbs/meta.yaml index b78c315eaf2a7..11db5c172c11c 100644 --- a/recipes/bioconductor-ahensdbs/meta.yaml +++ b/recipes/bioconductor-ahensdbs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f00a5fbd590a9337f295a58270f2a8d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ahensdbs/post-link.sh b/recipes/bioconductor-ahensdbs/post-link.sh index dca491de4733f..546e5c9e5220b 100644 --- a/recipes/bioconductor-ahensdbs/post-link.sh +++ b/recipes/bioconductor-ahensdbs/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/AHEnsDbs_1.0.9.tar.gz" "https://bioarchive.galaxyproject.org/AHEnsDbs_1.0.9.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ahensdbs/bioconductor-ahensdbs_1.0.9_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ahensdbs/bioconductor-ahensdbs_1.0.9_src_all.tar.gz" ) MD5="f00a5fbd590a9337f295a58270f2a8d0" diff --git a/recipes/bioconductor-aims/meta.yaml b/recipes/bioconductor-aims/meta.yaml index 3e25cb530d37b..146221ac6f683 100644 --- a/recipes/bioconductor-aims/meta.yaml +++ b/recipes/bioconductor-aims/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bd6fd76b022c0aeaeadc06cfe332a09a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-airway/meta.yaml b/recipes/bioconductor-airway/meta.yaml index ec317bbc2824b..b1b09318cb617 100644 --- a/recipes/bioconductor-airway/meta.yaml +++ b/recipes/bioconductor-airway/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ef609098c2893c759ddabbcb47cd4b6b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-airway/post-link.sh b/recipes/bioconductor-airway/post-link.sh index 1d7b965f0c15d..e21434cf13abf 100644 --- a/recipes/bioconductor-airway/post-link.sh +++ b/recipes/bioconductor-airway/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/airway_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/airway_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-airway/bioconductor-airway_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-airway/bioconductor-airway_1.4.0_src_all.tar.gz" ) MD5="ef609098c2893c759ddabbcb47cd4b6b" diff --git a/recipes/bioconductor-aldex2/meta.yaml b/recipes/bioconductor-aldex2/meta.yaml index 1c79b05fa9d7f..909c63f7fe167 100644 --- a/recipes/bioconductor-aldex2/meta.yaml +++ b/recipes/bioconductor-aldex2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 87792c8bd9d78c5b5ffdf069ce52fa8d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-alevinqc/meta.yaml b/recipes/bioconductor-alevinqc/meta.yaml index 0f9645618c6cd..832ed4ebb4362 100644 --- a/recipes/bioconductor-alevinqc/meta.yaml +++ b/recipes/bioconductor-alevinqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89abd6266744805e6da89f345a75b12c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-all/meta.yaml b/recipes/bioconductor-all/meta.yaml index 8f236287649a0..7a935d64e64ab 100644 --- a/recipes/bioconductor-all/meta.yaml +++ b/recipes/bioconductor-all/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_{{ name|lower }}.tar.gz' md5: 10195f32f47c4af7bcb37ed7bdba04cb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-all/post-link.sh b/recipes/bioconductor-all/post-link.sh index ca7b56fa25b7e..59bc987a7aa51 100644 --- a/recipes/bioconductor-all/post-link.sh +++ b/recipes/bioconductor-all/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ALL_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/ALL_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-all/bioconductor-all_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-all/bioconductor-all_1.26.0_src_all.tar.gz" ) MD5="10195f32f47c4af7bcb37ed7bdba04cb" diff --git a/recipes/bioconductor-allelicimbalance/meta.yaml b/recipes/bioconductor-allelicimbalance/meta.yaml index 47989f8eb8b04..3f0ce37a59fd5 100644 --- a/recipes/bioconductor-allelicimbalance/meta.yaml +++ b/recipes/bioconductor-allelicimbalance/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 807f1eb3d123bed77822e239fc05029b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-allenpvc/meta.yaml b/recipes/bioconductor-allenpvc/meta.yaml index 3ad2ee4023a66..aa2a2729deb5e 100644 --- a/recipes/bioconductor-allenpvc/meta.yaml +++ b/recipes/bioconductor-allenpvc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 37da5faac1aeef26425a1f0ac4b3981c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-allenpvc/post-link.sh b/recipes/bioconductor-allenpvc/post-link.sh index 485b268c80b2c..7aef26f4b66ac 100644 --- a/recipes/bioconductor-allenpvc/post-link.sh +++ b/recipes/bioconductor-allenpvc/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/allenpvc_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/allenpvc_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-allenpvc/bioconductor-allenpvc_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-allenpvc/bioconductor-allenpvc_1.2.0_src_all.tar.gz" ) MD5="37da5faac1aeef26425a1f0ac4b3981c" diff --git a/recipes/bioconductor-allmll/meta.yaml b/recipes/bioconductor-allmll/meta.yaml index 7b8ef0cdde52b..e011ab239091f 100644 --- a/recipes/bioconductor-allmll/meta.yaml +++ b/recipes/bioconductor-allmll/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 90b0a2dc8092018739e3c8b195888311 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-allmll/post-link.sh b/recipes/bioconductor-allmll/post-link.sh index 89d1f2e2d7191..c137f3a555553 100644 --- a/recipes/bioconductor-allmll/post-link.sh +++ b/recipes/bioconductor-allmll/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ALLMLL_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/ALLMLL_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-allmll/bioconductor-allmll_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-allmll/bioconductor-allmll_1.24.0_src_all.tar.gz" ) MD5="90b0a2dc8092018739e3c8b195888311" diff --git a/recipes/bioconductor-alpine/meta.yaml b/recipes/bioconductor-alpine/meta.yaml index b6953b0201e52..d06032d37b78d 100644 --- a/recipes/bioconductor-alpine/meta.yaml +++ b/recipes/bioconductor-alpine/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 406b4cea9ae12ceead4a586e194c567d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-alpinedata/meta.yaml b/recipes/bioconductor-alpinedata/meta.yaml index 6d8351253264e..fc230efddcfe0 100644 --- a/recipes/bioconductor-alpinedata/meta.yaml +++ b/recipes/bioconductor-alpinedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b97dd0b4c0e4b0b3b55308ffe850740f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-alpinedata/post-link.sh b/recipes/bioconductor-alpinedata/post-link.sh index cbdee4fe1921d..02501d37b2d92 100644 --- a/recipes/bioconductor-alpinedata/post-link.sh +++ b/recipes/bioconductor-alpinedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/alpineData_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/alpineData_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-alpinedata/bioconductor-alpinedata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-alpinedata/bioconductor-alpinedata_1.10.0_src_all.tar.gz" ) MD5="b97dd0b4c0e4b0b3b55308ffe850740f" diff --git a/recipes/bioconductor-alsace/meta.yaml b/recipes/bioconductor-alsace/meta.yaml index 5b558c36b0d7d..33d6c8799aabe 100644 --- a/recipes/bioconductor-alsace/meta.yaml +++ b/recipes/bioconductor-alsace/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d93cfabbc11b8b2d27bfabde5067437c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-altcdfenvs/meta.yaml b/recipes/bioconductor-altcdfenvs/meta.yaml index 3fd298d18e0a5..da93125888b27 100644 --- a/recipes/bioconductor-altcdfenvs/meta.yaml +++ b/recipes/bioconductor-altcdfenvs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 47a0200f44c54dd06492e69bd03cd051 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-alternativesplicingevents.hg19/meta.yaml b/recipes/bioconductor-alternativesplicingevents.hg19/meta.yaml index f70852f7c8b88..726d5eeea85be 100644 --- a/recipes/bioconductor-alternativesplicingevents.hg19/meta.yaml +++ b/recipes/bioconductor-alternativesplicingevents.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3e694353233e7d5d3abd22bfb5887513 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-alternativesplicingevents.hg38/meta.yaml b/recipes/bioconductor-alternativesplicingevents.hg38/meta.yaml index e1d26e50ec949..2aaa3b482c6a2 100644 --- a/recipes/bioconductor-alternativesplicingevents.hg38/meta.yaml +++ b/recipes/bioconductor-alternativesplicingevents.hg38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9ce2e10cfe00ec4451670e1fd18d2e37 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-amaretto/meta.yaml b/recipes/bioconductor-amaretto/meta.yaml index 3c271b64ca427..9e1455d1528b7 100644 --- a/recipes/bioconductor-amaretto/meta.yaml +++ b/recipes/bioconductor-amaretto/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 58c63ba233527e4f2b24d85aad2d857c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-amountain/meta.yaml b/recipes/bioconductor-amountain/meta.yaml index 15d32d3f5a94f..806972697a787 100644 --- a/recipes/bioconductor-amountain/meta.yaml +++ b/recipes/bioconductor-amountain/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4511063e0919b9b89aacee901f2273b3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,10 +21,8 @@ build: requirements: host: - r-base - - gsl run: - r-base - - gsl build: - {{ compiler('c') }} - make diff --git a/recipes/bioconductor-ampaffyexample/meta.yaml b/recipes/bioconductor-ampaffyexample/meta.yaml index 5632c920cab6f..159c6d725125f 100644 --- a/recipes/bioconductor-ampaffyexample/meta.yaml +++ b/recipes/bioconductor-ampaffyexample/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 90cc999d9d645e4478c8ca9bee8900b3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ampaffyexample/post-link.sh b/recipes/bioconductor-ampaffyexample/post-link.sh index 89faa8ac2e09a..ea68524f005da 100644 --- a/recipes/bioconductor-ampaffyexample/post-link.sh +++ b/recipes/bioconductor-ampaffyexample/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/AmpAffyExample_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/AmpAffyExample_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ampaffyexample/bioconductor-ampaffyexample_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ampaffyexample/bioconductor-ampaffyexample_1.24.0_src_all.tar.gz" ) MD5="90cc999d9d645e4478c8ca9bee8900b3" diff --git a/recipes/bioconductor-amplican/meta.yaml b/recipes/bioconductor-amplican/meta.yaml index ae6355a3d1145..7a0551c34cf51 100644 --- a/recipes/bioconductor-amplican/meta.yaml +++ b/recipes/bioconductor-amplican/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.6.0" %} +{% set version = "1.6.2" %} {% set name = "amplican" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: f4acd20d0f4f701b1e7dcc93a3c95f9f + md5: cdd1b6aa2e182879ce87c016fca65307 build: number: 0 rpaths: diff --git a/recipes/bioconductor-analysispageserver/meta.yaml b/recipes/bioconductor-analysispageserver/meta.yaml index d8d17169e84ee..b9ead8c18bf19 100644 --- a/recipes/bioconductor-analysispageserver/meta.yaml +++ b/recipes/bioconductor-analysispageserver/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0ffa66c286ebe271f01c493b88607b75 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-anamir/meta.yaml b/recipes/bioconductor-anamir/meta.yaml index 7e3ee55ba3e9e..085e26411af92 100644 --- a/recipes/bioconductor-anamir/meta.yaml +++ b/recipes/bioconductor-anamir/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.11.0" %} +{% set version = "1.12.0" %} {% set name = "anamiR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 88695f2755b1a925eba6c3742bcdd64c + md5: 06285506bef8fafd7d42ee689fb9b63b build: number: 0 rpaths: diff --git a/recipes/bioconductor-anaquin/meta.yaml b/recipes/bioconductor-anaquin/meta.yaml index ef6e377603100..071b8b2d74d7c 100644 --- a/recipes/bioconductor-anaquin/meta.yaml +++ b/recipes/bioconductor-anaquin/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a151bd5028a663f00df34bd73274a841 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-aneufinder/meta.yaml b/recipes/bioconductor-aneufinder/meta.yaml index f950d1cd57599..5447bbeb40f6a 100644 --- a/recipes/bioconductor-aneufinder/meta.yaml +++ b/recipes/bioconductor-aneufinder/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f4039076c73890e1ea9803a294f6dfe4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-aneufinderdata/meta.yaml b/recipes/bioconductor-aneufinderdata/meta.yaml index 7fd7d4e6e1e29..1bb4ca42fe913 100644 --- a/recipes/bioconductor-aneufinderdata/meta.yaml +++ b/recipes/bioconductor-aneufinderdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1c7d8037814fe4ba56e13c74d85175c1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-aneufinderdata/post-link.sh b/recipes/bioconductor-aneufinderdata/post-link.sh index 7472b6753f6d4..1af2e81114b5a 100644 --- a/recipes/bioconductor-aneufinderdata/post-link.sh +++ b/recipes/bioconductor-aneufinderdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/AneuFinderData_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/AneuFinderData_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-aneufinderdata/bioconductor-aneufinderdata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-aneufinderdata/bioconductor-aneufinderdata_1.12.0_src_all.tar.gz" ) MD5="1c7d8037814fe4ba56e13c74d85175c1" diff --git a/recipes/bioconductor-anf/meta.yaml b/recipes/bioconductor-anf/meta.yaml index 377c0a2f206ae..bef726bbc243c 100644 --- a/recipes/bioconductor-anf/meta.yaml +++ b/recipes/bioconductor-anf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8faf0a5e89310c253b504a30aa8e0287 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-animalcules/meta.yaml b/recipes/bioconductor-animalcules/meta.yaml index 6e3f17846d54f..8cafba432caef 100644 --- a/recipes/bioconductor-animalcules/meta.yaml +++ b/recipes/bioconductor-animalcules/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.6" %} {% set name = "animalcules" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: f975ef9dbb18ecdfb265f0c6fc4c611d + md5: 60c7d9b3d4691fc2ab67834d83122d64 build: number: 0 rpaths: diff --git a/recipes/bioconductor-annaffy/meta.yaml b/recipes/bioconductor-annaffy/meta.yaml index 266a9299d0d20..c1d1195caf768 100644 --- a/recipes/bioconductor-annaffy/meta.yaml +++ b/recipes/bioconductor-annaffy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a8a02ef5f29978804a1d2c8e013829a5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annmap/meta.yaml b/recipes/bioconductor-annmap/meta.yaml index 0efaccf66ab99..e53b9730b5ed3 100644 --- a/recipes/bioconductor-annmap/meta.yaml +++ b/recipes/bioconductor-annmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 721ffaaaab01aabd5bbbf20d7c25d1ce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotate/meta.yaml b/recipes/bioconductor-annotate/meta.yaml index 10de48c28239b..ddee289845eca 100644 --- a/recipes/bioconductor-annotate/meta.yaml +++ b/recipes/bioconductor-annotate/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8f03aad5fa522e027f0446f15eeaa1ea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotationdbi/meta.yaml b/recipes/bioconductor-annotationdbi/meta.yaml index c65476d8af625..ad7da6360db35 100644 --- a/recipes/bioconductor-annotationdbi/meta.yaml +++ b/recipes/bioconductor-annotationdbi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1a415419b12be8f26f698d38a97d1cfe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotationfilter/meta.yaml b/recipes/bioconductor-annotationfilter/meta.yaml index d18a431789ed1..26d58c08ce037 100644 --- a/recipes/bioconductor-annotationfilter/meta.yaml +++ b/recipes/bioconductor-annotationfilter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 603cfc35bf42d7549f2643e31b79a7a3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotationforge/meta.yaml b/recipes/bioconductor-annotationforge/meta.yaml index f67801a1a780c..85263a4199a81 100644 --- a/recipes/bioconductor-annotationforge/meta.yaml +++ b/recipes/bioconductor-annotationforge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f2394220b4915aa9338cf5173a83dcd5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotationfuncs/meta.yaml b/recipes/bioconductor-annotationfuncs/meta.yaml index 1f3ef3c584942..2e4c763b44f5f 100644 --- a/recipes/bioconductor-annotationfuncs/meta.yaml +++ b/recipes/bioconductor-annotationfuncs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: be945cfe20ec22abb94c68865e053fac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotationhub/meta.yaml b/recipes/bioconductor-annotationhub/meta.yaml index 8fcab1c20bb63..be47c4e6afd68 100644 --- a/recipes/bioconductor-annotationhub/meta.yaml +++ b/recipes/bioconductor-annotationhub/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a361fea7f2fbddb542ab9a50ef3ba27e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotationhubdata/meta.yaml b/recipes/bioconductor-annotationhubdata/meta.yaml index aa3644973ec6e..3636c02dd8ce2 100644 --- a/recipes/bioconductor-annotationhubdata/meta.yaml +++ b/recipes/bioconductor-annotationhubdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8b2804206858012619e1ea021ac13d3f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotationtools/meta.yaml b/recipes/bioconductor-annotationtools/meta.yaml index c7e5f31547f75..8c1b5985dcc13 100644 --- a/recipes/bioconductor-annotationtools/meta.yaml +++ b/recipes/bioconductor-annotationtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a3d93246437cc2a1e60e4c83e1dc14c2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-annotatr/meta.yaml b/recipes/bioconductor-annotatr/meta.yaml index 63101863f6220..0d3b69af69771 100644 --- a/recipes/bioconductor-annotatr/meta.yaml +++ b/recipes/bioconductor-annotatr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bebb93f6f3a99c3cdb56158c49e26029 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-anopheles.db0/meta.yaml b/recipes/bioconductor-anopheles.db0/meta.yaml index 7e0344b864e57..9985e63bff312 100644 --- a/recipes/bioconductor-anopheles.db0/meta.yaml +++ b/recipes/bioconductor-anopheles.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8ee605dc6b30694688ffe67e71259ca8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-anopheles.db0/post-link.sh b/recipes/bioconductor-anopheles.db0/post-link.sh index 92fc74403942e..1c54a5af0b419 100644 --- a/recipes/bioconductor-anopheles.db0/post-link.sh +++ b/recipes/bioconductor-anopheles.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/anopheles.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/anopheles.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-anopheles.db0/bioconductor-anopheles.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-anopheles.db0/bioconductor-anopheles.db0_3.8.2_src_all.tar.gz" ) MD5="8ee605dc6b30694688ffe67e71259ca8" diff --git a/recipes/bioconductor-anota/meta.yaml b/recipes/bioconductor-anota/meta.yaml index 7da21688617aa..a2ebb97f9f5b3 100644 --- a/recipes/bioconductor-anota/meta.yaml +++ b/recipes/bioconductor-anota/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6b3a90ec4a197d10eb21ba9197e542c2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-anota2seq/meta.yaml b/recipes/bioconductor-anota2seq/meta.yaml index 9f6374f717ef4..def4b038a9f39 100644 --- a/recipes/bioconductor-anota2seq/meta.yaml +++ b/recipes/bioconductor-anota2seq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 10fc0941a5f771a929f463e9a386b763 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-antiprofiles/meta.yaml b/recipes/bioconductor-antiprofiles/meta.yaml index 8d2a05b131e80..d8ff15e383ffb 100644 --- a/recipes/bioconductor-antiprofiles/meta.yaml +++ b/recipes/bioconductor-antiprofiles/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bdd8104b20e733ee81f7ebfd42810921 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-antiprofilesdata/meta.yaml b/recipes/bioconductor-antiprofilesdata/meta.yaml index 2788f7a5c6a5b..ce8df07226853 100644 --- a/recipes/bioconductor-antiprofilesdata/meta.yaml +++ b/recipes/bioconductor-antiprofilesdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 939e6ebc361769f5198676a9502baba7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-antiprofilesdata/post-link.sh b/recipes/bioconductor-antiprofilesdata/post-link.sh index 2a8cd31eefa5f..74e8471847697 100644 --- a/recipes/bioconductor-antiprofilesdata/post-link.sh +++ b/recipes/bioconductor-antiprofilesdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/antiProfilesData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/antiProfilesData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-antiprofilesdata/bioconductor-antiprofilesdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-antiprofilesdata/bioconductor-antiprofilesdata_1.20.0_src_all.tar.gz" ) MD5="939e6ebc361769f5198676a9502baba7" diff --git a/recipes/bioconductor-apcomplex/meta.yaml b/recipes/bioconductor-apcomplex/meta.yaml index 253c5a6a01b71..720d7557b3182 100644 --- a/recipes/bioconductor-apcomplex/meta.yaml +++ b/recipes/bioconductor-apcomplex/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 97c9a7b9d83a2e280c6731ba19fd40a6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-apeglm/meta.yaml b/recipes/bioconductor-apeglm/meta.yaml index a3c1b706196c3..d5c5faca43545 100644 --- a/recipes/bioconductor-apeglm/meta.yaml +++ b/recipes/bioconductor-apeglm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: be62827e5f20cdd38a44f3c163417486 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-appreci8r/meta.yaml b/recipes/bioconductor-appreci8r/meta.yaml index 15bbe7d8d2585..def377537958b 100644 --- a/recipes/bioconductor-appreci8r/meta.yaml +++ b/recipes/bioconductor-appreci8r/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d0ae21a6be2fd7919476f6bb03172e48 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,20 +27,20 @@ requirements: - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-genomicscores >=1.8.0,<1.9.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-mafdb.1kgenomes.phase3.hs37d5 >=3.8.0,<3.9.0' - - 'bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 >=3.8.0,<3.9.0' - - 'bioconductor-mafdb.exac.r1.0.hs37d5 >=3.8.0,<3.9.0' + - 'bioconductor-mafdb.1kgenomes.phase3.hs37d5 >=3.7.0,<3.8.0' + - 'bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 >=3.7.0,<3.8.0' + - 'bioconductor-mafdb.exac.r1.0.hs37d5 >=3.7.0,<3.8.0' - 'bioconductor-polyphen.hsapiens.dbsnp131 >=1.0.0,<1.1.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - 'bioconductor-sift.hsapiens.dbsnp137 >=1.0.0,<1.1.0' - - 'bioconductor-snplocs.hsapiens.dbsnp144.grch37 >=1.0.0,<1.1.0' + - 'bioconductor-snplocs.hsapiens.dbsnp144.grch37 >=0.99.0,<0.100.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' - - 'bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37 >=1.0.0,<1.1.0' + - 'bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37 >=0.99.0,<0.100.0' - r-base - r-dt - r-mafdb.gnomadex.r2.0.1.hs37d5 @@ -59,20 +59,20 @@ requirements: - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-genomicscores >=1.8.0,<1.9.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-mafdb.1kgenomes.phase3.hs37d5 >=3.8.0,<3.9.0' - - 'bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 >=3.8.0,<3.9.0' - - 'bioconductor-mafdb.exac.r1.0.hs37d5 >=3.8.0,<3.9.0' + - 'bioconductor-mafdb.1kgenomes.phase3.hs37d5 >=3.7.0,<3.8.0' + - 'bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 >=3.7.0,<3.8.0' + - 'bioconductor-mafdb.exac.r1.0.hs37d5 >=3.7.0,<3.8.0' - 'bioconductor-polyphen.hsapiens.dbsnp131 >=1.0.0,<1.1.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - 'bioconductor-sift.hsapiens.dbsnp137 >=1.0.0,<1.1.0' - - 'bioconductor-snplocs.hsapiens.dbsnp144.grch37 >=1.0.0,<1.1.0' + - 'bioconductor-snplocs.hsapiens.dbsnp144.grch37 >=0.99.0,<0.100.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' - - 'bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37 >=1.0.0,<1.1.0' + - 'bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37 >=0.99.0,<0.100.0' - r-base - r-dt - r-mafdb.gnomadex.r2.0.1.hs37d5 diff --git a/recipes/bioconductor-arabidopsis.db0/meta.yaml b/recipes/bioconductor-arabidopsis.db0/meta.yaml index 71beb5550455f..3b2105da997d3 100644 --- a/recipes/bioconductor-arabidopsis.db0/meta.yaml +++ b/recipes/bioconductor-arabidopsis.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8a9e7a715dee82af3056db3a41416049 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arabidopsis.db0/post-link.sh b/recipes/bioconductor-arabidopsis.db0/post-link.sh index b540c2af6699b..31c077f9e6122 100644 --- a/recipes/bioconductor-arabidopsis.db0/post-link.sh +++ b/recipes/bioconductor-arabidopsis.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/arabidopsis.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/arabidopsis.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-arabidopsis.db0/bioconductor-arabidopsis.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-arabidopsis.db0/bioconductor-arabidopsis.db0_3.8.2_src_all.tar.gz" ) MD5="8a9e7a715dee82af3056db3a41416049" diff --git a/recipes/bioconductor-aracne.networks/meta.yaml b/recipes/bioconductor-aracne.networks/meta.yaml index 3125efd8a430e..025058f2682dd 100644 --- a/recipes/bioconductor-aracne.networks/meta.yaml +++ b/recipes/bioconductor-aracne.networks/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3dafc172cee133222db156054e3bf6f9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-aracne.networks/post-link.sh b/recipes/bioconductor-aracne.networks/post-link.sh index 85a289aacaef4..b4338d3a06d35 100644 --- a/recipes/bioconductor-aracne.networks/post-link.sh +++ b/recipes/bioconductor-aracne.networks/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/aracne.networks_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/aracne.networks_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-aracne.networks/bioconductor-aracne.networks_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-aracne.networks/bioconductor-aracne.networks_1.10.0_src_all.tar.gz" ) MD5="3dafc172cee133222db156054e3bf6f9" diff --git a/recipes/bioconductor-aroma.light/meta.yaml b/recipes/bioconductor-aroma.light/meta.yaml index d5da50ae71b47..9f2eb0434ec06 100644 --- a/recipes/bioconductor-aroma.light/meta.yaml +++ b/recipes/bioconductor-aroma.light/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b088ab52f1b5adc3ec73956627927728 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arrayexpress/meta.yaml b/recipes/bioconductor-arrayexpress/meta.yaml index f9f0885dff32e..8321f69cd1707 100644 --- a/recipes/bioconductor-arrayexpress/meta.yaml +++ b/recipes/bioconductor-arrayexpress/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 76ff83867cd18b53bffdab25bd564245 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arrayexpresshts/meta.yaml b/recipes/bioconductor-arrayexpresshts/meta.yaml index 57db506929d40..194d3e403f061 100644 --- a/recipes/bioconductor-arrayexpresshts/meta.yaml +++ b/recipes/bioconductor-arrayexpresshts/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.33.1" %} +{% set version = "1.34.2" %} {% set name = "ArrayExpressHTS" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 0fd123cf9a46084572632cd06b919a7d + md5: 21ecd501928c5b7eb99ab88236041f1b build: number: 0 rpaths: @@ -26,6 +26,7 @@ requirements: - 'bioconductor-edger >=3.26.0,<3.27.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' + - 'bioconductor-rhtslib >=1.16.0,<1.17.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-shortread >=1.42.0,<1.43.0' - r-base @@ -48,6 +49,7 @@ requirements: - 'bioconductor-edger >=3.26.0,<3.27.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' + - 'bioconductor-rhtslib >=1.16.0,<1.17.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-shortread >=1.42.0,<1.43.0' - r-base diff --git a/recipes/bioconductor-arraymvout/meta.yaml b/recipes/bioconductor-arraymvout/meta.yaml index d8a72e29713cc..0db9b3e30bea7 100644 --- a/recipes/bioconductor-arraymvout/meta.yaml +++ b/recipes/bioconductor-arraymvout/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 27e2ed35f77af3c61d937e7694dfd814 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arrayquality/meta.yaml b/recipes/bioconductor-arrayquality/meta.yaml index 9fb985d4a4437..a0f59314876c9 100644 --- a/recipes/bioconductor-arrayquality/meta.yaml +++ b/recipes/bioconductor-arrayquality/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 23f5d66736b23ca32f6db3b55b2f0b59 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arrayqualitymetrics/meta.yaml b/recipes/bioconductor-arrayqualitymetrics/meta.yaml index a8fb732b191d1..e3f10a1b7f52d 100644 --- a/recipes/bioconductor-arrayqualitymetrics/meta.yaml +++ b/recipes/bioconductor-arrayqualitymetrics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: feb4513176dad1e95c490dcf866092cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arraytools/meta.yaml b/recipes/bioconductor-arraytools/meta.yaml index 6eafd6eae0a88..21932c0a90a1f 100644 --- a/recipes/bioconductor-arraytools/meta.yaml +++ b/recipes/bioconductor-arraytools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3e41b9280d67c39c0002721d521906d5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arraytv/meta.yaml b/recipes/bioconductor-arraytv/meta.yaml index 84ba03a056493..fa2bcb9f71899 100644 --- a/recipes/bioconductor-arraytv/meta.yaml +++ b/recipes/bioconductor-arraytv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e73af58a14b0d432bb15491156f492bc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arrmdata/meta.yaml b/recipes/bioconductor-arrmdata/meta.yaml index 8d5a3cd6bc4a3..a1347edba7fad 100644 --- a/recipes/bioconductor-arrmdata/meta.yaml +++ b/recipes/bioconductor-arrmdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a31c9743207a9e6e802284323c235412 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-arrmdata/post-link.sh b/recipes/bioconductor-arrmdata/post-link.sh index 9174ad851b0ae..6442d0b9f4fcb 100644 --- a/recipes/bioconductor-arrmdata/post-link.sh +++ b/recipes/bioconductor-arrmdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ARRmData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/ARRmData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-arrmdata/bioconductor-arrmdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-arrmdata/bioconductor-arrmdata_1.20.0_src_all.tar.gz" ) MD5="a31c9743207a9e6e802284323c235412" diff --git a/recipes/bioconductor-arrmnormalization/meta.yaml b/recipes/bioconductor-arrmnormalization/meta.yaml index 6ffa2e4a5fbfa..c0d16810a4b28 100644 --- a/recipes/bioconductor-arrmnormalization/meta.yaml +++ b/recipes/bioconductor-arrmnormalization/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fa44aea8216cb0a17a0719b10e276e89 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-artms/meta.yaml b/recipes/bioconductor-artms/meta.yaml index 2f751182e18c7..49ba01f0a6b4e 100644 --- a/recipes/bioconductor-artms/meta.yaml +++ b/recipes/bioconductor-artms/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.6" %} {% set name = "artMS" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 1b1ad8a15d8db237f9a932446f95d474 + md5: 36e720026633cef75d3d299bc4c6ec6e build: number: 0 rpaths: @@ -49,6 +49,7 @@ requirements: - r-plyr - r-rcolorbrewer - r-reshape2 + - r-scales - r-seqinr - r-stringr - r-tidyr @@ -85,6 +86,7 @@ requirements: - r-plyr - r-rcolorbrewer - r-reshape2 + - r-scales - r-seqinr - r-stringr - r-tidyr diff --git a/recipes/bioconductor-asafe/meta.yaml b/recipes/bioconductor-asafe/meta.yaml index 94002b0408e89..17585ac97b7eb 100644 --- a/recipes/bioconductor-asafe/meta.yaml +++ b/recipes/bioconductor-asafe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 607a5a93f3de7de64f09dea96c0526d6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-aseb/meta.yaml b/recipes/bioconductor-aseb/meta.yaml index 20b4f4c3b2981..789f72597858a 100644 --- a/recipes/bioconductor-aseb/meta.yaml +++ b/recipes/bioconductor-aseb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 72879a9c7bf18ea45b4cd0fd9855fe3c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-asgsca/meta.yaml b/recipes/bioconductor-asgsca/meta.yaml index d0d8e894e8517..8fdc6f243e7d1 100644 --- a/recipes/bioconductor-asgsca/meta.yaml +++ b/recipes/bioconductor-asgsca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8684a6a76f7d751d64bd09bf5f090a7e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ashkenazimsonchr21/meta.yaml b/recipes/bioconductor-ashkenazimsonchr21/meta.yaml index 3bfca252800b8..bd9c3eb2113cf 100644 --- a/recipes/bioconductor-ashkenazimsonchr21/meta.yaml +++ b/recipes/bioconductor-ashkenazimsonchr21/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: afcd79416fd2b6fb83f2ad1793dcbc2b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ashkenazimsonchr21/post-link.sh b/recipes/bioconductor-ashkenazimsonchr21/post-link.sh index f26121d5ed7d4..0f91c14a8cf6b 100644 --- a/recipes/bioconductor-ashkenazimsonchr21/post-link.sh +++ b/recipes/bioconductor-ashkenazimsonchr21/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/AshkenazimSonChr21_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/AshkenazimSonChr21_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ashkenazimsonchr21/bioconductor-ashkenazimsonchr21_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ashkenazimsonchr21/bioconductor-ashkenazimsonchr21_1.14.0_src_all.tar.gz" ) MD5="afcd79416fd2b6fb83f2ad1793dcbc2b" diff --git a/recipes/bioconductor-asics/build.sh b/recipes/bioconductor-asics/build.sh index c1d13421f5f1e..4b4a73a150a8f 100644 --- a/recipes/bioconductor-asics/build.sh +++ b/recipes/bioconductor-asics/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-asics/meta.yaml b/recipes/bioconductor-asics/meta.yaml index 15827c45b233f..7ce4f0185424c 100644 --- a/recipes/bioconductor-asics/meta.yaml +++ b/recipes/bioconductor-asics/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.0.0" %} +{% set version = "2.0.1" %} {% set name = "ASICS" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 53c51cd55179c23fff2f9e2a767168cc + md5: 71eb78f4f9359b06cde805d19d9e5d8f build: number: 0 rpaths: @@ -19,6 +19,13 @@ build: noarch: generic # Suggests: knitr, rmarkdown, BiocStyle, testthat, ASICSdata requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' - 'bioconductor-pepsnmr >=1.2.0,<1.3.0' @@ -47,9 +54,11 @@ requirements: - r-zoo test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>= 2)' summary: 'With a set of pure metabolite reference spectra, ASICS quantifies concentration of metabolites in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017) .' - +extra: + container: + extended-base: true diff --git a/recipes/bioconductor-asicsdata/meta.yaml b/recipes/bioconductor-asicsdata/meta.yaml index 7ab561a4acb1d..6e25fc21f7d70 100644 --- a/recipes/bioconductor-asicsdata/meta.yaml +++ b/recipes/bioconductor-asicsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c8a51bb2154a98248afedc0b926acd7d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-asicsdata/post-link.sh b/recipes/bioconductor-asicsdata/post-link.sh index 170805375db61..48784a94214e8 100644 --- a/recipes/bioconductor-asicsdata/post-link.sh +++ b/recipes/bioconductor-asicsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ASICSdata_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/ASICSdata_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-asicsdata/bioconductor-asicsdata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-asicsdata/bioconductor-asicsdata_1.4.0_src_all.tar.gz" ) MD5="c8a51bb2154a98248afedc0b926acd7d" diff --git a/recipes/bioconductor-aspli/meta.yaml b/recipes/bioconductor-aspli/meta.yaml index 99022a71454cb..f91293b18f006 100644 --- a/recipes/bioconductor-aspli/meta.yaml +++ b/recipes/bioconductor-aspli/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 552cdc96a5dfd1b28a87c9f9928e3036 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-assessorf/meta.yaml b/recipes/bioconductor-assessorf/meta.yaml index 81ed2d8e88e9c..c8a5869b08022 100644 --- a/recipes/bioconductor-assessorf/meta.yaml +++ b/recipes/bioconductor-assessorf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7fe2617641b7963168599745ebbc2598 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-assessorfdata/meta.yaml b/recipes/bioconductor-assessorfdata/meta.yaml index 101662ca43483..9c477c9df34d0 100644 --- a/recipes/bioconductor-assessorfdata/meta.yaml +++ b/recipes/bioconductor-assessorfdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d8fb320aa512adb3b5c4656d7f2809b2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-assessorfdata/post-link.sh b/recipes/bioconductor-assessorfdata/post-link.sh index d4302b3e232f9..14dfbfce4f738 100644 --- a/recipes/bioconductor-assessorfdata/post-link.sh +++ b/recipes/bioconductor-assessorfdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/AssessORFData_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/AssessORFData_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-assessorfdata/bioconductor-assessorfdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-assessorfdata/bioconductor-assessorfdata_1.2.0_src_all.tar.gz" ) MD5="d8fb320aa512adb3b5c4656d7f2809b2" diff --git a/recipes/bioconductor-asset/meta.yaml b/recipes/bioconductor-asset/meta.yaml index d18d4b13154fb..a75d465fb3715 100644 --- a/recipes/bioconductor-asset/meta.yaml +++ b/recipes/bioconductor-asset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 962772db656337d51d15eac8b0a3fc86 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-assign/meta.yaml b/recipes/bioconductor-assign/meta.yaml index da9437800fada..08e1896097641 100644 --- a/recipes/bioconductor-assign/meta.yaml +++ b/recipes/bioconductor-assign/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 92fc35d4e6b9944a41e5cf84e702f25a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-atacseqqc/meta.yaml b/recipes/bioconductor-atacseqqc/meta.yaml index 826d6eed6e468..bfbc6194043f3 100644 --- a/recipes/bioconductor-atacseqqc/meta.yaml +++ b/recipes/bioconductor-atacseqqc/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.5" %} {% set name = "ATACseqQC" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 24706d6fc7038f2f94d1b9caf85acdad + md5: 3438da92fc2782eef32ec360e2461817 build: number: 0 rpaths: diff --git a/recipes/bioconductor-ath1121501.db/meta.yaml b/recipes/bioconductor-ath1121501.db/meta.yaml index cf071a8de49e7..07a4ab8690589 100644 --- a/recipes/bioconductor-ath1121501.db/meta.yaml +++ b/recipes/bioconductor-ath1121501.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ff9977848321463b27a379ed31fffbc3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ath1121501cdf/meta.yaml b/recipes/bioconductor-ath1121501cdf/meta.yaml index a098dd0f6cb0d..1dbefbaa55274 100644 --- a/recipes/bioconductor-ath1121501cdf/meta.yaml +++ b/recipes/bioconductor-ath1121501cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8b63798143219b7c1c2666a91a1a2440 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ath1121501probe/meta.yaml b/recipes/bioconductor-ath1121501probe/meta.yaml index 618aa52401810..2f07239d63e3a 100644 --- a/recipes/bioconductor-ath1121501probe/meta.yaml +++ b/recipes/bioconductor-ath1121501probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eeeae5e6550bb472ba3419d71bbd7dfb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-atsnp/meta.yaml b/recipes/bioconductor-atsnp/meta.yaml index 92dd51b0500ae..55fc6bc1e7e93 100644 --- a/recipes/bioconductor-atsnp/meta.yaml +++ b/recipes/bioconductor-atsnp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3af26fbd4c4878de74d0e4abedef8462 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-attract/meta.yaml b/recipes/bioconductor-attract/meta.yaml index f7568044e94ee..051731ff8b6de 100644 --- a/recipes/bioconductor-attract/meta.yaml +++ b/recipes/bioconductor-attract/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 84ae2e3cffca1dc87cc4adc53a2da5ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-aucell/meta.yaml b/recipes/bioconductor-aucell/meta.yaml index 417facc8358de..0ab2052fe5735 100644 --- a/recipes/bioconductor-aucell/meta.yaml +++ b/recipes/bioconductor-aucell/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.6.0" %} +{% set version = "1.6.1" %} {% set name = "AUCell" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 60e912117110a72c8c328d69c52c59d3 + md5: 1b362074c0d854fdc60789f81a924b05 build: number: 0 rpaths: diff --git a/recipes/bioconductor-baalchip/meta.yaml b/recipes/bioconductor-baalchip/meta.yaml index 32ae0a5222fe8..17240af049150 100644 --- a/recipes/bioconductor-baalchip/meta.yaml +++ b/recipes/bioconductor-baalchip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d9cae5f88c75467961335bd0e1bd88de build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bac/meta.yaml b/recipes/bioconductor-bac/meta.yaml index f50b2f370a970..6272381a67a46 100644 --- a/recipes/bioconductor-bac/meta.yaml +++ b/recipes/bioconductor-bac/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7503cab362d622450435212c7aca4436 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bacon/meta.yaml b/recipes/bioconductor-bacon/meta.yaml index cece414f608ab..6c6958283c7d9 100644 --- a/recipes/bioconductor-bacon/meta.yaml +++ b/recipes/bioconductor-bacon/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 86a2cea86bb1adf7f064f2558665b7c0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bader/meta.yaml b/recipes/bioconductor-bader/meta.yaml index 95dcc96e99a41..eddf6fd326f0e 100644 --- a/recipes/bioconductor-bader/meta.yaml +++ b/recipes/bioconductor-bader/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c12c151e27efae47af5137305a7d6f75 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-badregionfinder/meta.yaml b/recipes/bioconductor-badregionfinder/meta.yaml index 3b3e497767789..80e05fe1d959b 100644 --- a/recipes/bioconductor-badregionfinder/meta.yaml +++ b/recipes/bioconductor-badregionfinder/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6e3813a39cffe2ded4ee72248cf704e2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bags/meta.yaml b/recipes/bioconductor-bags/meta.yaml index fb0a96652b83d..76b8042d03f30 100644 --- a/recipes/bioconductor-bags/meta.yaml +++ b/recipes/bioconductor-bags/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bf7b643c639d196d99411a851f5215cb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ballgown/meta.yaml b/recipes/bioconductor-ballgown/meta.yaml index 27b5fd8311a2b..4b4f0a867dde8 100644 --- a/recipes/bioconductor-ballgown/meta.yaml +++ b/recipes/bioconductor-ballgown/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 80c05edb3007ae4bd8774ee870d4c9de build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bamsignals/meta.yaml b/recipes/bioconductor-bamsignals/meta.yaml index d081bd14a07f5..72327d6593b1d 100644 --- a/recipes/bioconductor-bamsignals/meta.yaml +++ b/recipes/bioconductor-bamsignals/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d193458eb5ac2b8af0c95ed0a6ef48dd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bandits/meta.yaml b/recipes/bioconductor-bandits/meta.yaml index 1a9496a5a34b5..9855e7a1f1435 100644 --- a/recipes/bioconductor-bandits/meta.yaml +++ b/recipes/bioconductor-bandits/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d2a9930abcadaa225c59afe1fd0e6097 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-banocc/meta.yaml b/recipes/bioconductor-banocc/meta.yaml index ded8b27d9ebb2..3abd418b4018b 100644 --- a/recipes/bioconductor-banocc/meta.yaml +++ b/recipes/bioconductor-banocc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2efc9ad31f51961ccb514914002cf5f9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-barley1cdf/meta.yaml b/recipes/bioconductor-barley1cdf/meta.yaml index b7914f3555193..962204840ab03 100644 --- a/recipes/bioconductor-barley1cdf/meta.yaml +++ b/recipes/bioconductor-barley1cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 16a2ca83f550518756d9fa3273672157 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-barley1probe/meta.yaml b/recipes/bioconductor-barley1probe/meta.yaml index 4f5c00969b4dc..610f9ee150149 100644 --- a/recipes/bioconductor-barley1probe/meta.yaml +++ b/recipes/bioconductor-barley1probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 80595d8ecf83ba83ea84a722a24ab474 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-basecallqc/meta.yaml b/recipes/bioconductor-basecallqc/meta.yaml index 38da8e94c1d3a..b0d9f108b1258 100644 --- a/recipes/bioconductor-basecallqc/meta.yaml +++ b/recipes/bioconductor-basecallqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1833033cf86b2c75d24b284a3bb3700f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-basespacer/meta.yaml b/recipes/bioconductor-basespacer/meta.yaml index 45c2b91b41f5d..c27ecfea17506 100644 --- a/recipes/bioconductor-basespacer/meta.yaml +++ b/recipes/bioconductor-basespacer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bf914f2845df6896b289430c7dda8fb7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-basic4cseq/meta.yaml b/recipes/bioconductor-basic4cseq/meta.yaml index 20272cfaf0eae..11934d42f5a27 100644 --- a/recipes/bioconductor-basic4cseq/meta.yaml +++ b/recipes/bioconductor-basic4cseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 60ecce3e0bfa529c4a4a99c72a55b046 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,7 +21,7 @@ build: requirements: host: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - - 'bioconductor-bsgenome.ecoli.ncbi.20080805 >=1.4.0,<1.5.0' + - 'bioconductor-bsgenome.ecoli.ncbi.20080805 >=1.3.0,<1.4.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - r-base @@ -29,7 +29,7 @@ requirements: - r-rcircos run: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - - 'bioconductor-bsgenome.ecoli.ncbi.20080805 >=1.4.0,<1.5.0' + - 'bioconductor-bsgenome.ecoli.ncbi.20080805 >=1.3.0,<1.4.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - r-base diff --git a/recipes/bioconductor-basics/meta.yaml b/recipes/bioconductor-basics/meta.yaml index 13e98cda1d296..94008c716718f 100644 --- a/recipes/bioconductor-basics/meta.yaml +++ b/recipes/bioconductor-basics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2313c99d85e93025a11ad67d50a931ad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-basicstarrseq/meta.yaml b/recipes/bioconductor-basicstarrseq/meta.yaml index 064864be92650..0caeab17dada9 100644 --- a/recipes/bioconductor-basicstarrseq/meta.yaml +++ b/recipes/bioconductor-basicstarrseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d2511adf3fc8177f9135ba710a978b98 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-batchelor/meta.yaml b/recipes/bioconductor-batchelor/meta.yaml index bf96dd7e6823d..2c92a1d0a434d 100644 --- a/recipes/bioconductor-batchelor/meta.yaml +++ b/recipes/bioconductor-batchelor/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "batchelor" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: dae9ed9c63eb9de4e21f8d826ac09eef + md5: 60f36d9c6ef3150cf85106a496deb95f build: number: 0 rpaths: diff --git a/recipes/bioconductor-batchqc/meta.yaml b/recipes/bioconductor-batchqc/meta.yaml index 5e17ec4ba2ca6..d37f4e46d9ec1 100644 --- a/recipes/bioconductor-batchqc/meta.yaml +++ b/recipes/bioconductor-batchqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e34082012f9e8d1689143057dd6ec626 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -37,7 +37,6 @@ requirements: - r-reshape2 - r-rmarkdown - r-shiny - - pandoc run: - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-sva >=3.32.0,<3.33.0' @@ -55,7 +54,6 @@ requirements: - r-reshape2 - r-rmarkdown - r-shiny - - pandoc test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-bayesknockdown/meta.yaml b/recipes/bioconductor-bayesknockdown/meta.yaml index 9ece09d289a1d..dfaf06a937ee7 100644 --- a/recipes/bioconductor-bayesknockdown/meta.yaml +++ b/recipes/bioconductor-bayesknockdown/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c3790c39334419427105d2404a4e8155 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bayespeak/meta.yaml b/recipes/bioconductor-bayespeak/meta.yaml index 107548af45f3f..2b226d1035924 100644 --- a/recipes/bioconductor-bayespeak/meta.yaml +++ b/recipes/bioconductor-bayespeak/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5cbdcb27c5f5fd239bb1a3b0521d5e3c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-baynorm/meta.yaml b/recipes/bioconductor-baynorm/meta.yaml index c0538303c2806..50a0dc22c122d 100644 --- a/recipes/bioconductor-baynorm/meta.yaml +++ b/recipes/bioconductor-baynorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 32d5215e13ae5eccf197f760b8c2f368 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bayseq/meta.yaml b/recipes/bioconductor-bayseq/meta.yaml index 2ee3df5cb469a..319a727285351 100644 --- a/recipes/bioconductor-bayseq/meta.yaml +++ b/recipes/bioconductor-bayseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: db957567c040f3240610ab767f1bb0c4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bbcanalyzer/meta.yaml b/recipes/bioconductor-bbcanalyzer/meta.yaml index 4d1b0f2cb1ecf..0ecf6a9fb456a 100644 --- a/recipes/bioconductor-bbcanalyzer/meta.yaml +++ b/recipes/bioconductor-bbcanalyzer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 350d7307122713cb15aab5eee510c524 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bcellviper/meta.yaml b/recipes/bioconductor-bcellviper/meta.yaml index 38cea8f2bbf04..1b2d0137f96bd 100644 --- a/recipes/bioconductor-bcellviper/meta.yaml +++ b/recipes/bioconductor-bcellviper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e0533eed79305a8a39db5051ba7fb9a5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bcellviper/post-link.sh b/recipes/bioconductor-bcellviper/post-link.sh index 992f568e3e754..e0cbf492edab5 100644 --- a/recipes/bioconductor-bcellviper/post-link.sh +++ b/recipes/bioconductor-bcellviper/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/bcellViper_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/bcellViper_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bcellviper/bioconductor-bcellviper_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bcellviper/bioconductor-bcellviper_1.20.0_src_all.tar.gz" ) MD5="e0533eed79305a8a39db5051ba7fb9a5" diff --git a/recipes/bioconductor-bcrank/meta.yaml b/recipes/bioconductor-bcrank/meta.yaml index a0fabc013470e..92a65bb34ee17 100644 --- a/recipes/bioconductor-bcrank/meta.yaml +++ b/recipes/bioconductor-bcrank/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1e9103225b4ac26e8252a559d9622498 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bcseq/meta.yaml b/recipes/bioconductor-bcseq/meta.yaml index 8e02d1fda18c6..373eefcc16970 100644 --- a/recipes/bioconductor-bcseq/meta.yaml +++ b/recipes/bioconductor-bcseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 522909473d50d079a1b737a997d24414 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bdmmacorrect/meta.yaml b/recipes/bioconductor-bdmmacorrect/meta.yaml index 63edece99c271..d9d8f1369979b 100644 --- a/recipes/bioconductor-bdmmacorrect/meta.yaml +++ b/recipes/bioconductor-bdmmacorrect/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 08b2cfecf96d63befb59e857ad9b7bf4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beachmat/meta.yaml b/recipes/bioconductor-beachmat/meta.yaml index 34d1dcf191fee..c16a476fb0e70 100644 --- a/recipes/bioconductor-beachmat/meta.yaml +++ b/recipes/bioconductor-beachmat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c0c0ea857cbfc243f4350ef48527b6f5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beadarray/meta.yaml b/recipes/bioconductor-beadarray/meta.yaml index 0f8f7cf8e364b..9c4ce8f08f6c6 100644 --- a/recipes/bioconductor-beadarray/meta.yaml +++ b/recipes/bioconductor-beadarray/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4f03d3bd7e45479f800e943ef7e4384d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beadarrayexampledata/meta.yaml b/recipes/bioconductor-beadarrayexampledata/meta.yaml index 34480b138460b..0b8c4993f5764 100644 --- a/recipes/bioconductor-beadarrayexampledata/meta.yaml +++ b/recipes/bioconductor-beadarrayexampledata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ade87a63114d99fd5a48b24d7b08bfbb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beadarrayexampledata/post-link.sh b/recipes/bioconductor-beadarrayexampledata/post-link.sh index 6aaeecbebdee3..50d538999afaf 100644 --- a/recipes/bioconductor-beadarrayexampledata/post-link.sh +++ b/recipes/bioconductor-beadarrayexampledata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/beadarrayExampleData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/beadarrayExampleData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-beadarrayexampledata/bioconductor-beadarrayexampledata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-beadarrayexampledata/bioconductor-beadarrayexampledata_1.22.0_src_all.tar.gz" ) MD5="ade87a63114d99fd5a48b24d7b08bfbb" diff --git a/recipes/bioconductor-beadarraysnp/meta.yaml b/recipes/bioconductor-beadarraysnp/meta.yaml index 48b24585e4ff5..6a7e255ba33ad 100644 --- a/recipes/bioconductor-beadarraysnp/meta.yaml +++ b/recipes/bioconductor-beadarraysnp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: be8d5f6c4373eb5b19bef26fe6f9fb48 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beadarrayusecases/meta.yaml b/recipes/bioconductor-beadarrayusecases/meta.yaml index f752203c0e502..e3f9f9a37959b 100644 --- a/recipes/bioconductor-beadarrayusecases/meta.yaml +++ b/recipes/bioconductor-beadarrayusecases/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f137cb510837fa607e144c2c1290d846 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beadarrayusecases/post-link.sh b/recipes/bioconductor-beadarrayusecases/post-link.sh index aa43710cb94e7..d43777eee9f3e 100644 --- a/recipes/bioconductor-beadarrayusecases/post-link.sh +++ b/recipes/bioconductor-beadarrayusecases/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/BeadArrayUseCases_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/BeadArrayUseCases_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-beadarrayusecases/bioconductor-beadarrayusecases_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-beadarrayusecases/bioconductor-beadarrayusecases_1.22.0_src_all.tar.gz" ) MD5="f137cb510837fa607e144c2c1290d846" diff --git a/recipes/bioconductor-beaddatapackr/meta.yaml b/recipes/bioconductor-beaddatapackr/meta.yaml index 6f516ce9d6c03..3a56ad99d4089 100644 --- a/recipes/bioconductor-beaddatapackr/meta.yaml +++ b/recipes/bioconductor-beaddatapackr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: caf869b373fa5fbd3820f7760d2cf84f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bearscc/meta.yaml b/recipes/bioconductor-bearscc/meta.yaml index 92d070aded0cc..dd4e8f6e90954 100644 --- a/recipes/bioconductor-bearscc/meta.yaml +++ b/recipes/bioconductor-bearscc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 74b837640990a0c334f1ec70bc269165 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beat/meta.yaml b/recipes/bioconductor-beat/meta.yaml index aead314d4f9c6..cc9a7d68f9fd7 100644 --- a/recipes/bioconductor-beat/meta.yaml +++ b/recipes/bioconductor-beat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5ca0f1e34e04fd2c3293960760fd7b80 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beclear/meta.yaml b/recipes/bioconductor-beclear/meta.yaml index ae725fe0536ad..99d13029c3a8a 100644 --- a/recipes/bioconductor-beclear/meta.yaml +++ b/recipes/bioconductor-beclear/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 92515d8f34e66403c62df8b192d0dbdf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beta7/meta.yaml b/recipes/bioconductor-beta7/meta.yaml index 370ef1fc81ed6..e8d04ee872ff1 100644 --- a/recipes/bioconductor-beta7/meta.yaml +++ b/recipes/bioconductor-beta7/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 60b008e68244a7e355d290ac76aa0b04 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-beta7/post-link.sh b/recipes/bioconductor-beta7/post-link.sh index f979e87954980..3b4101f173d8d 100644 --- a/recipes/bioconductor-beta7/post-link.sh +++ b/recipes/bioconductor-beta7/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/beta7_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/beta7_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-beta7/bioconductor-beta7_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-beta7/bioconductor-beta7_1.22.0_src_all.tar.gz" ) MD5="60b008e68244a7e355d290ac76aa0b04" diff --git a/recipes/bioconductor-bgafun/meta.yaml b/recipes/bioconductor-bgafun/meta.yaml index 013addceb64ef..df65899182180 100644 --- a/recipes/bioconductor-bgafun/meta.yaml +++ b/recipes/bioconductor-bgafun/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 62e6be628d01e80d2193cd34d29602ac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bgeedb/meta.yaml b/recipes/bioconductor-bgeedb/meta.yaml index a2463d484255d..bf2430acca47e 100644 --- a/recipes/bioconductor-bgeedb/meta.yaml +++ b/recipes/bioconductor-bgeedb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4da20080e790bd0121458d873a9d525b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bgmix/meta.yaml b/recipes/bioconductor-bgmix/meta.yaml index 9fa64a6ed20f8..5140c8bd6ce9d 100644 --- a/recipes/bioconductor-bgmix/meta.yaml +++ b/recipes/bioconductor-bgmix/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ed5d6b4d0fdcbc4b26fa57154d9e8cba build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bgx/meta.yaml b/recipes/bioconductor-bgx/meta.yaml index e110c46fcb9c1..3366d86068909 100644 --- a/recipes/bioconductor-bgx/meta.yaml +++ b/recipes/bioconductor-bgx/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0249dde7f7644bf8aee843004a9deb93 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bhc/meta.yaml b/recipes/bioconductor-bhc/meta.yaml index 5e992b480beb2..99f834d46ebf1 100644 --- a/recipes/bioconductor-bhc/meta.yaml +++ b/recipes/bioconductor-bhc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 068199f15d449715b3a74a4065f548ec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bicare/meta.yaml b/recipes/bioconductor-bicare/meta.yaml index 2070e4b3b0966..ffe69e229a804 100644 --- a/recipes/bioconductor-bicare/meta.yaml +++ b/recipes/bioconductor-bicare/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: db034e853c41bbe8c9bbd029b4810082 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bifet/meta.yaml b/recipes/bioconductor-bifet/meta.yaml index 49d0011c5be37..ec807c13dfd25 100644 --- a/recipes/bioconductor-bifet/meta.yaml +++ b/recipes/bioconductor-bifet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9d5de94f76d910215de96b965bc1eaab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biggr/meta.yaml b/recipes/bioconductor-biggr/meta.yaml index 13a50c83b636d..26a0190439b02 100644 --- a/recipes/bioconductor-biggr/meta.yaml +++ b/recipes/bioconductor-biggr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b10464c305eafcdb9f52d932a36f0382 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bigmelon/meta.yaml b/recipes/bioconductor-bigmelon/meta.yaml index 4547ac6bb9c87..a24b570ee76dc 100644 --- a/recipes/bioconductor-bigmelon/meta.yaml +++ b/recipes/bioconductor-bigmelon/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fb80cb687a5702ad151f2217b577da3e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bigmemoryextras/meta.yaml b/recipes/bioconductor-bigmemoryextras/meta.yaml index 57b9f1bff4666..a3a0b1cbf7582 100644 --- a/recipes/bioconductor-bigmemoryextras/meta.yaml +++ b/recipes/bioconductor-bigmemoryextras/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f8f4f43d3318d5118883e89803205d49 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bigpint/meta.yaml b/recipes/bioconductor-bigpint/meta.yaml index 200e6389d5b9c..e49cffba41661 100644 --- a/recipes/bioconductor-bigpint/meta.yaml +++ b/recipes/bioconductor-bigpint/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e088f5debc65a3f6b74f6f47b9949bc3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bioassayr/meta.yaml b/recipes/bioconductor-bioassayr/meta.yaml index e31b560d1248a..7e315b6e47106 100644 --- a/recipes/bioconductor-bioassayr/meta.yaml +++ b/recipes/bioconductor-bioassayr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 78c3d0f8997a2ad15ca8cce89222bc9c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biobase/meta.yaml b/recipes/bioconductor-biobase/meta.yaml index cb74b3d2294fe..3e7ab1fe69d14 100644 --- a/recipes/bioconductor-biobase/meta.yaml +++ b/recipes/bioconductor-biobase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2f8f240f9146ececcd4e297c86705ae0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biobroom/meta.yaml b/recipes/bioconductor-biobroom/meta.yaml index 252e79d2b8196..106346279fe07 100644 --- a/recipes/bioconductor-biobroom/meta.yaml +++ b/recipes/bioconductor-biobroom/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4541701fe3cbd912a008c0254029b54a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocancer/meta.yaml b/recipes/bioconductor-biocancer/meta.yaml index 2eca818fc1f9a..5326427e56441 100644 --- a/recipes/bioconductor-biocancer/meta.yaml +++ b/recipes/bioconductor-biocancer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ff8c79305222e25cf02716f9ceb953e6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bioccasestudies/meta.yaml b/recipes/bioconductor-bioccasestudies/meta.yaml index 75542a421a587..5e714df929b04 100644 --- a/recipes/bioconductor-bioccasestudies/meta.yaml +++ b/recipes/bioconductor-bioccasestudies/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 04e12153b18240289d6891b6000e5e1a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bioccheck/meta.yaml b/recipes/bioconductor-bioccheck/meta.yaml index cc0ed80c1f4d8..9469cdc7e28c6 100644 --- a/recipes/bioconductor-bioccheck/meta.yaml +++ b/recipes/bioconductor-bioccheck/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f7f9dcecc38c06d20364dc756d21f324 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocfilecache/meta.yaml b/recipes/bioconductor-biocfilecache/meta.yaml index d28a1ba6fbb63..cb3f7ebb4b407 100644 --- a/recipes/bioconductor-biocfilecache/meta.yaml +++ b/recipes/bioconductor-biocfilecache/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e362534e2cd232efbe27190cbd15fbb9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocgenerics/meta.yaml b/recipes/bioconductor-biocgenerics/meta.yaml index cb1748e69a63c..8fb35e729a31c 100644 --- a/recipes/bioconductor-biocgenerics/meta.yaml +++ b/recipes/bioconductor-biocgenerics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 77e2d121cec79b2656c24621b77923da build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocgraph/meta.yaml b/recipes/bioconductor-biocgraph/meta.yaml index 0f8706fdd1429..eafadfde1b087 100644 --- a/recipes/bioconductor-biocgraph/meta.yaml +++ b/recipes/bioconductor-biocgraph/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8c4c19f08f543393ec056e3c14fcafca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocneighbors/meta.yaml b/recipes/bioconductor-biocneighbors/meta.yaml index 999efe65dae6d..e73a2739314a2 100644 --- a/recipes/bioconductor-biocneighbors/meta.yaml +++ b/recipes/bioconductor-biocneighbors/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ea04a1707a7374e2de38e2f0310eaf80 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bioconcotk/meta.yaml b/recipes/bioconductor-bioconcotk/meta.yaml index a037922e73af6..02242b0a2443e 100644 --- a/recipes/bioconductor-bioconcotk/meta.yaml +++ b/recipes/bioconductor-bioconcotk/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 16fba5eb15058c62c7f28924a3c28223 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocor/meta.yaml b/recipes/bioconductor-biocor/meta.yaml index 3fefe9b9a579e..99ae24d425cc7 100644 --- a/recipes/bioconductor-biocor/meta.yaml +++ b/recipes/bioconductor-biocor/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} {% set name = "BioCor" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 96d1d1f5f124ad493f0ff15c88c8daaa + md5: 379330238ba3a7de619f7259087eb598 build: number: 0 rpaths: diff --git a/recipes/bioconductor-biocparallel/meta.yaml b/recipes/bioconductor-biocparallel/meta.yaml index a0acd89a8f449..52dc6aef783f0 100644 --- a/recipes/bioconductor-biocparallel/meta.yaml +++ b/recipes/bioconductor-biocparallel/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7b6606106480c45a0876c42db947ebe7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocpkgtools/meta.yaml b/recipes/bioconductor-biocpkgtools/meta.yaml index d7fc0f1a7c467..7c1b2f3b9bbcb 100644 --- a/recipes/bioconductor-biocpkgtools/meta.yaml +++ b/recipes/bioconductor-biocpkgtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 579be6f301bf4c99ebdfd01c757b751c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocsingular/meta.yaml b/recipes/bioconductor-biocsingular/meta.yaml index d423d5359df82..52995e5e82ea2 100644 --- a/recipes/bioconductor-biocsingular/meta.yaml +++ b/recipes/bioconductor-biocsingular/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 529a83b1188e9db77f65c5b51fa67ded build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocsklearn/meta.yaml b/recipes/bioconductor-biocsklearn/meta.yaml index cffc4cf67b547..a7e8bf99a132c 100644 --- a/recipes/bioconductor-biocsklearn/meta.yaml +++ b/recipes/bioconductor-biocsklearn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 08d1933cf9d02f67c3eb8bbda351afd5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,10 +27,10 @@ requirements: - r-knitr - r-reticulate - python - - sklearn - numpy - pandas - h5py + - scikit-learn run: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - r-base @@ -38,10 +38,10 @@ requirements: - r-knitr - r-reticulate - python - - sklearn - numpy - pandas - h5py + - scikit-learn test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-biocstyle/meta.yaml b/recipes/bioconductor-biocstyle/meta.yaml index 013fed5a5ff99..bd2c0ea070067 100644 --- a/recipes/bioconductor-biocstyle/meta.yaml +++ b/recipes/bioconductor-biocstyle/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ef988ecd950940e6d7f9dcaa76bbdeb4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocversion/meta.yaml b/recipes/bioconductor-biocversion/meta.yaml index f115a56603f60..d94a9bbddb920 100644 --- a/recipes/bioconductor-biocversion/meta.yaml +++ b/recipes/bioconductor-biocversion/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 82c8be204ec54af118c304eee89b1ca7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biocviews/meta.yaml b/recipes/bioconductor-biocviews/meta.yaml index 6dbfc5af63a9d..a158a9ba34742 100644 --- a/recipes/bioconductor-biocviews/meta.yaml +++ b/recipes/bioconductor-biocviews/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.52.0" %} +{% set version = "1.52.2" %} {% set name = "biocViews" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 13ae0c16ad260e4c54f1857437111055 + md5: 620818e4fd029a3acf46d437c08752a7 build: number: 0 rpaths: @@ -24,6 +24,7 @@ requirements: - 'bioconductor-graph >=1.62.0,<1.63.0' - 'bioconductor-rbgl >=1.60.0,<1.61.0' - r-base + - r-biocmanager - r-rcurl - r-runit - r-xml @@ -32,6 +33,7 @@ requirements: - 'bioconductor-graph >=1.62.0,<1.63.0' - 'bioconductor-rbgl >=1.60.0,<1.61.0' - r-base + - r-biocmanager - r-rcurl - r-runit - r-xml diff --git a/recipes/bioconductor-biocworkflowtools/meta.yaml b/recipes/bioconductor-biocworkflowtools/meta.yaml index 644c7ad5a1936..8298087ed0397 100644 --- a/recipes/bioconductor-biocworkflowtools/meta.yaml +++ b/recipes/bioconductor-biocworkflowtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b35b8354e016215f29f0fa4c7108e4ef build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biodist/meta.yaml b/recipes/bioconductor-biodist/meta.yaml index 87ae25391acc3..be43225bb8f63 100644 --- a/recipes/bioconductor-biodist/meta.yaml +++ b/recipes/bioconductor-biodist/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2d840412a1cb4aa5a70a225fa5be7a4b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biomart/meta.yaml b/recipes/bioconductor-biomart/meta.yaml index d7f9135bc38cb..7f07208fee85d 100644 --- a/recipes/bioconductor-biomart/meta.yaml +++ b/recipes/bioconductor-biomart/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.40.0" %} +{% set version = "2.40.3" %} {% set name = "biomaRt" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 4056c9f0f519c2024075419323a3191b + md5: c81eda6fb9a619bf97d4a37c5af80356 build: number: 0 rpaths: diff --git a/recipes/bioconductor-biomformat/meta.yaml b/recipes/bioconductor-biomformat/meta.yaml index 7decee5febe08..6dc9bf73bce0e 100644 --- a/recipes/bioconductor-biomformat/meta.yaml +++ b/recipes/bioconductor-biomformat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d2a93f141e43ac49d4e7ded308ecb29f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biomm/meta.yaml b/recipes/bioconductor-biomm/meta.yaml index 1e815ca31cea3..762b947383506 100644 --- a/recipes/bioconductor-biomm/meta.yaml +++ b/recipes/bioconductor-biomm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c82d385b2460620296de121163c9b500 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biomvcclass/meta.yaml b/recipes/bioconductor-biomvcclass/meta.yaml index ff0b4dfa26211..963ad2bfa455b 100644 --- a/recipes/bioconductor-biomvcclass/meta.yaml +++ b/recipes/bioconductor-biomvcclass/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dc40cf1df6b1793993401d3f8438625f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biomvrcns/meta.yaml b/recipes/bioconductor-biomvrcns/meta.yaml index dd94425d94f98..3e42fa1c462e8 100644 --- a/recipes/bioconductor-biomvrcns/meta.yaml +++ b/recipes/bioconductor-biomvrcns/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: abf2ba8352f9473e8e489f55569a307e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bionet/meta.yaml b/recipes/bioconductor-bionet/meta.yaml index 8e84ae6279f50..ab4d5df600fd9 100644 --- a/recipes/bioconductor-bionet/meta.yaml +++ b/recipes/bioconductor-bionet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 33b3f5065ff53b5414ca11432a489261 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bionetstat/meta.yaml b/recipes/bioconductor-bionetstat/meta.yaml index f38ceeb590dd7..8145c4491f8c9 100644 --- a/recipes/bioconductor-bionetstat/meta.yaml +++ b/recipes/bioconductor-bionetstat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d846bf02baf8bedceb371250c12810dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bioqc/meta.yaml b/recipes/bioconductor-bioqc/meta.yaml index c128d407ae47d..6683e9768205a 100644 --- a/recipes/bioconductor-bioqc/meta.yaml +++ b/recipes/bioconductor-bioqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: acd4981f54d129a02e19563063f8be27 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bioseqclass/meta.yaml b/recipes/bioconductor-bioseqclass/meta.yaml index f4793b528be14..f5d7cf4d3f412 100644 --- a/recipes/bioconductor-bioseqclass/meta.yaml +++ b/recipes/bioconductor-bioseqclass/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f84297e07369bf7aeeef25aad3e45261 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biosigner/meta.yaml b/recipes/bioconductor-biosigner/meta.yaml index 7f6fe20ae909e..9e9a4bddab689 100644 --- a/recipes/bioconductor-biosigner/meta.yaml +++ b/recipes/bioconductor-biosigner/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 370b5493603495a810a607df9587e081 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biostrings/meta.yaml b/recipes/bioconductor-biostrings/meta.yaml index edfc979c76cdb..f9b930bfa674f 100644 --- a/recipes/bioconductor-biostrings/meta.yaml +++ b/recipes/bioconductor-biostrings/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 288b4398c81188be1a32bfd27241492d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biosvd/meta.yaml b/recipes/bioconductor-biosvd/meta.yaml index 5291589f7ae01..9e48c9d34b668 100644 --- a/recipes/bioconductor-biosvd/meta.yaml +++ b/recipes/bioconductor-biosvd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c445ae7cb8f2f00107f38edc234a92c8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biotmle/meta.yaml b/recipes/bioconductor-biotmle/meta.yaml index 2a5cb095b4dab..7cda94c331c4f 100644 --- a/recipes/bioconductor-biotmle/meta.yaml +++ b/recipes/bioconductor-biotmle/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c19bed4db37f90de3029d5374f65d94a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biotmledata/meta.yaml b/recipes/bioconductor-biotmledata/meta.yaml index e9c4f551a1a56..1d4052a6d273e 100644 --- a/recipes/bioconductor-biotmledata/meta.yaml +++ b/recipes/bioconductor-biotmledata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 81e38ef555e606146c1a7c8358a2f3a6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biotmledata/post-link.sh b/recipes/bioconductor-biotmledata/post-link.sh index e50d0e89006c9..bfad75b51229d 100644 --- a/recipes/bioconductor-biotmledata/post-link.sh +++ b/recipes/bioconductor-biotmledata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/biotmleData_1.8.0.tar.gz" "https://bioarchive.galaxyproject.org/biotmleData_1.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-biotmledata/bioconductor-biotmledata_1.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-biotmledata/bioconductor-biotmledata_1.8.0_src_all.tar.gz" ) MD5="81e38ef555e606146c1a7c8358a2f3a6" diff --git a/recipes/bioconductor-biovizbase/meta.yaml b/recipes/bioconductor-biovizbase/meta.yaml index 67dbc9747b77e..f0994cbff77cd 100644 --- a/recipes/bioconductor-biovizbase/meta.yaml +++ b/recipes/bioconductor-biovizbase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cae76703fef55cb32ba79461f815b86e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-birewire/meta.yaml b/recipes/bioconductor-birewire/meta.yaml index 045e8ae1ff5bf..6aa6778c715dd 100644 --- a/recipes/bioconductor-birewire/meta.yaml +++ b/recipes/bioconductor-birewire/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f0ffa84bfc1b5a61653bfdc3fa10d25e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-birta/meta.yaml b/recipes/bioconductor-birta/meta.yaml index 6b5c61c92155c..c59195e4c0dba 100644 --- a/recipes/bioconductor-birta/meta.yaml +++ b/recipes/bioconductor-birta/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d4c84a404a92d5698e1af22fd17da36b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-biseq/meta.yaml b/recipes/bioconductor-biseq/meta.yaml index 2217c1f4627bd..e873289942ae8 100644 --- a/recipes/bioconductor-biseq/meta.yaml +++ b/recipes/bioconductor-biseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c460a1ce9835304b0c0caaed08b7e828 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bitseq/meta.yaml b/recipes/bioconductor-bitseq/meta.yaml index 6658215aead35..49a06ca303e28 100644 --- a/recipes/bioconductor-bitseq/meta.yaml +++ b/recipes/bioconductor-bitseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 813708121ae472700424da3cde5fdf22 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bladderbatch/meta.yaml b/recipes/bioconductor-bladderbatch/meta.yaml index 13374c785f4ed..31b6e106c177e 100644 --- a/recipes/bioconductor-bladderbatch/meta.yaml +++ b/recipes/bioconductor-bladderbatch/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 218fc2ffe79cb78448361adc8c9a3c2b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bladderbatch/post-link.sh b/recipes/bioconductor-bladderbatch/post-link.sh index 9db120950b6a3..ecb7b01c7ae19 100644 --- a/recipes/bioconductor-bladderbatch/post-link.sh +++ b/recipes/bioconductor-bladderbatch/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/bladderbatch_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/bladderbatch_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bladderbatch/bioconductor-bladderbatch_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bladderbatch/bioconductor-bladderbatch_1.22.0_src_all.tar.gz" ) MD5="218fc2ffe79cb78448361adc8c9a3c2b" diff --git a/recipes/bioconductor-blima/meta.yaml b/recipes/bioconductor-blima/meta.yaml index f4baf6f66e1ca..6c90a9a986712 100644 --- a/recipes/bioconductor-blima/meta.yaml +++ b/recipes/bioconductor-blima/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2e95ea07342f80f96e6893c08a11ef12 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-blimatestingdata/meta.yaml b/recipes/bioconductor-blimatestingdata/meta.yaml index 61018d8fd702d..d6e28992361c2 100644 --- a/recipes/bioconductor-blimatestingdata/meta.yaml +++ b/recipes/bioconductor-blimatestingdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0b979387eeedb8a9e0c32e120f2c6593 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-blimatestingdata/post-link.sh b/recipes/bioconductor-blimatestingdata/post-link.sh index eb5f45104c7a1..1ab5b1b1857f4 100644 --- a/recipes/bioconductor-blimatestingdata/post-link.sh +++ b/recipes/bioconductor-blimatestingdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/blimaTestingData_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/blimaTestingData_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-blimatestingdata/bioconductor-blimatestingdata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-blimatestingdata/bioconductor-blimatestingdata_1.4.0_src_all.tar.gz" ) MD5="0b979387eeedb8a9e0c32e120f2c6593" diff --git a/recipes/bioconductor-blma/meta.yaml b/recipes/bioconductor-blma/meta.yaml index f74fb2566fb53..7c5997668a5ab 100644 --- a/recipes/bioconductor-blma/meta.yaml +++ b/recipes/bioconductor-blma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 03448e027232a4ce824f5981f73f3858 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bloodcancermultiomics2017/meta.yaml b/recipes/bioconductor-bloodcancermultiomics2017/meta.yaml index f2bd2a148cede..bf1ea8ee3e492 100644 --- a/recipes/bioconductor-bloodcancermultiomics2017/meta.yaml +++ b/recipes/bioconductor-bloodcancermultiomics2017/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5836db39c714421d8cd32c63030483b9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bloodcancermultiomics2017/post-link.sh b/recipes/bioconductor-bloodcancermultiomics2017/post-link.sh index 9a53f6298095e..dbd7a3f1a0d3a 100644 --- a/recipes/bioconductor-bloodcancermultiomics2017/post-link.sh +++ b/recipes/bioconductor-bloodcancermultiomics2017/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/BloodCancerMultiOmics2017_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/BloodCancerMultiOmics2017_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bloodcancermultiomics2017/bioconductor-bloodcancermultiomics2017_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bloodcancermultiomics2017/bioconductor-bloodcancermultiomics2017_1.4.0_src_all.tar.gz" ) MD5="5836db39c714421d8cd32c63030483b9" diff --git a/recipes/bioconductor-bnbc/meta.yaml b/recipes/bioconductor-bnbc/meta.yaml index 3c4daf1a01986..910185960f362 100644 --- a/recipes/bioconductor-bnbc/meta.yaml +++ b/recipes/bioconductor-bnbc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2ac97c91b275868cae06795309f84f1c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bodymaprat/meta.yaml b/recipes/bioconductor-bodymaprat/meta.yaml index 5db9973f0169b..7d19116e6d0ed 100644 --- a/recipes/bioconductor-bodymaprat/meta.yaml +++ b/recipes/bioconductor-bodymaprat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 828a327a3b634d6861595baea00c4ac3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bodymaprat/post-link.sh b/recipes/bioconductor-bodymaprat/post-link.sh index 4e0849692c39a..92988e8f2da86 100644 --- a/recipes/bioconductor-bodymaprat/post-link.sh +++ b/recipes/bioconductor-bodymaprat/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/bodymapRat_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/bodymapRat_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bodymaprat/bioconductor-bodymaprat_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bodymaprat/bioconductor-bodymaprat_1.0.0_src_all.tar.gz" ) MD5="828a327a3b634d6861595baea00c4ac3" diff --git a/recipes/bioconductor-bovine.db/meta.yaml b/recipes/bioconductor-bovine.db/meta.yaml index acd1368c373f7..4dc9298433d6e 100644 --- a/recipes/bioconductor-bovine.db/meta.yaml +++ b/recipes/bioconductor-bovine.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0006dd79279fa1bf69a275e0586f2197 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bovine.db0/meta.yaml b/recipes/bioconductor-bovine.db0/meta.yaml index d7bb01459043c..e088e020f06d6 100644 --- a/recipes/bioconductor-bovine.db0/meta.yaml +++ b/recipes/bioconductor-bovine.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b7c423c42b6aa3519636b4b7f204840a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bovine.db0/post-link.sh b/recipes/bioconductor-bovine.db0/post-link.sh index f47a0bfb214ec..33e52e6f05776 100644 --- a/recipes/bioconductor-bovine.db0/post-link.sh +++ b/recipes/bioconductor-bovine.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/bovine.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/bovine.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bovine.db0/bioconductor-bovine.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bovine.db0/bioconductor-bovine.db0_3.8.2_src_all.tar.gz" ) MD5="b7c423c42b6aa3519636b4b7f204840a" diff --git a/recipes/bioconductor-bovinecdf/meta.yaml b/recipes/bioconductor-bovinecdf/meta.yaml index ea2919cd2f6bd..67bf7ac68cf46 100644 --- a/recipes/bioconductor-bovinecdf/meta.yaml +++ b/recipes/bioconductor-bovinecdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e155fc7d5f84ee420d9b250a639af305 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bovineprobe/meta.yaml b/recipes/bioconductor-bovineprobe/meta.yaml index 0ff972a797a6b..4e2b50a4f9b11 100644 --- a/recipes/bioconductor-bovineprobe/meta.yaml +++ b/recipes/bioconductor-bovineprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9f9e25fc8c7a76acf541745b7c09748b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bprmeth/meta.yaml b/recipes/bioconductor-bprmeth/meta.yaml index ec69158060ac5..eccaacbad3f21 100644 --- a/recipes/bioconductor-bprmeth/meta.yaml +++ b/recipes/bioconductor-bprmeth/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bbcac2501e39ec8cc0610666f24dafa7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-brain/meta.yaml b/recipes/bioconductor-brain/meta.yaml index 7fa3e1a4a611f..9e5b60255486f 100644 --- a/recipes/bioconductor-brain/meta.yaml +++ b/recipes/bioconductor-brain/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 66a32ce11265c7b523f7e4736aa777c4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-brainimager/meta.yaml b/recipes/bioconductor-brainimager/meta.yaml index 76e7fb00034b4..36be39a34d5b6 100644 --- a/recipes/bioconductor-brainimager/meta.yaml +++ b/recipes/bioconductor-brainimager/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4e4558bdb154e1bad002543fca8f1c10 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-brainimagerdata/meta.yaml b/recipes/bioconductor-brainimagerdata/meta.yaml index f13464a1d7480..2a0c23b7611d7 100644 --- a/recipes/bioconductor-brainimagerdata/meta.yaml +++ b/recipes/bioconductor-brainimagerdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 54c39516d8efa96d6404737c09bddb94 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-brainimagerdata/post-link.sh b/recipes/bioconductor-brainimagerdata/post-link.sh index dcc75f61e1cf7..473921cdef090 100644 --- a/recipes/bioconductor-brainimagerdata/post-link.sh +++ b/recipes/bioconductor-brainimagerdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/brainImageRdata_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/brainImageRdata_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-brainimagerdata/bioconductor-brainimagerdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-brainimagerdata/bioconductor-brainimagerdata_1.2.0_src_all.tar.gz" ) MD5="54c39516d8efa96d6404737c09bddb94" diff --git a/recipes/bioconductor-brainstars/meta.yaml b/recipes/bioconductor-brainstars/meta.yaml index f28efe3e33151..2e6e589e03d6a 100644 --- a/recipes/bioconductor-brainstars/meta.yaml +++ b/recipes/bioconductor-brainstars/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 56f8fb333636c6039354361fb6ea6c7e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-branchpointer/meta.yaml b/recipes/bioconductor-branchpointer/meta.yaml index 8720191366608..7c1ab459f58c6 100644 --- a/recipes/bioconductor-branchpointer/meta.yaml +++ b/recipes/bioconductor-branchpointer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3b81c925b5c40c1767e6b923782bf57e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breakpointr/meta.yaml b/recipes/bioconductor-breakpointr/meta.yaml index 9b02f4a8804b7..1292f18e12128 100644 --- a/recipes/bioconductor-breakpointr/meta.yaml +++ b/recipes/bioconductor-breakpointr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: acb110bb2c43c9bfac81309de7281960 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breakpointrdata/meta.yaml b/recipes/bioconductor-breakpointrdata/meta.yaml index 6cffb384b004d..b97738d2b5276 100644 --- a/recipes/bioconductor-breakpointrdata/meta.yaml +++ b/recipes/bioconductor-breakpointrdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5bb31f8819f87705c211d99636af87eb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breakpointrdata/post-link.sh b/recipes/bioconductor-breakpointrdata/post-link.sh index cd81585f6eb00..7e0d432037754 100644 --- a/recipes/bioconductor-breakpointrdata/post-link.sh +++ b/recipes/bioconductor-breakpointrdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/breakpointRdata_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/breakpointRdata_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-breakpointrdata/bioconductor-breakpointrdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-breakpointrdata/bioconductor-breakpointrdata_1.2.0_src_all.tar.gz" ) MD5="5bb31f8819f87705c211d99636af87eb" diff --git a/recipes/bioconductor-breastcancermainz/meta.yaml b/recipes/bioconductor-breastcancermainz/meta.yaml index f3fc563ea0cb0..7e27b8fca21ae 100644 --- a/recipes/bioconductor-breastcancermainz/meta.yaml +++ b/recipes/bioconductor-breastcancermainz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f04819049e4092504c4f5a7c84f0ce4b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breastcancermainz/post-link.sh b/recipes/bioconductor-breastcancermainz/post-link.sh index 53e7f99ecc0ca..a98f1eec04e04 100644 --- a/recipes/bioconductor-breastcancermainz/post-link.sh +++ b/recipes/bioconductor-breastcancermainz/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/breastCancerMAINZ_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/breastCancerMAINZ_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-breastcancermainz/bioconductor-breastcancermainz_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-breastcancermainz/bioconductor-breastcancermainz_1.22.0_src_all.tar.gz" ) MD5="f04819049e4092504c4f5a7c84f0ce4b" diff --git a/recipes/bioconductor-breastcancernki/meta.yaml b/recipes/bioconductor-breastcancernki/meta.yaml index 7cb83c4db41b4..95c1adec2b440 100644 --- a/recipes/bioconductor-breastcancernki/meta.yaml +++ b/recipes/bioconductor-breastcancernki/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 60ba238770e734f7995c540e52ced5d7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breastcancernki/post-link.sh b/recipes/bioconductor-breastcancernki/post-link.sh index 48f4a93072aca..8630aa3cd7712 100644 --- a/recipes/bioconductor-breastcancernki/post-link.sh +++ b/recipes/bioconductor-breastcancernki/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/breastCancerNKI_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/breastCancerNKI_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-breastcancernki/bioconductor-breastcancernki_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-breastcancernki/bioconductor-breastcancernki_1.22.0_src_all.tar.gz" ) MD5="60ba238770e734f7995c540e52ced5d7" diff --git a/recipes/bioconductor-breastcancertransbig/meta.yaml b/recipes/bioconductor-breastcancertransbig/meta.yaml index edef622c831af..9e6ad2d72f4e2 100644 --- a/recipes/bioconductor-breastcancertransbig/meta.yaml +++ b/recipes/bioconductor-breastcancertransbig/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1752abd0640ff2958d4b91752b68b28c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breastcancertransbig/post-link.sh b/recipes/bioconductor-breastcancertransbig/post-link.sh index 656991656a6aa..2be07a0659cf8 100644 --- a/recipes/bioconductor-breastcancertransbig/post-link.sh +++ b/recipes/bioconductor-breastcancertransbig/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/breastCancerTRANSBIG_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/breastCancerTRANSBIG_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-breastcancertransbig/bioconductor-breastcancertransbig_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-breastcancertransbig/bioconductor-breastcancertransbig_1.22.0_src_all.tar.gz" ) MD5="1752abd0640ff2958d4b91752b68b28c" diff --git a/recipes/bioconductor-breastcancerunt/meta.yaml b/recipes/bioconductor-breastcancerunt/meta.yaml index a6d79704c060f..bf0c22b7b0c3e 100644 --- a/recipes/bioconductor-breastcancerunt/meta.yaml +++ b/recipes/bioconductor-breastcancerunt/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4abb8ad6dee3b46bfe38e5712993418d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breastcancerunt/post-link.sh b/recipes/bioconductor-breastcancerunt/post-link.sh index b06b8293ccbdb..49dc266afe720 100644 --- a/recipes/bioconductor-breastcancerunt/post-link.sh +++ b/recipes/bioconductor-breastcancerunt/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/breastCancerUNT_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/breastCancerUNT_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-breastcancerunt/bioconductor-breastcancerunt_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-breastcancerunt/bioconductor-breastcancerunt_1.22.0_src_all.tar.gz" ) MD5="4abb8ad6dee3b46bfe38e5712993418d" diff --git a/recipes/bioconductor-breastcancerupp/meta.yaml b/recipes/bioconductor-breastcancerupp/meta.yaml index 4779dc3959746..699e7e5cac13e 100644 --- a/recipes/bioconductor-breastcancerupp/meta.yaml +++ b/recipes/bioconductor-breastcancerupp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2c41fe7534c5a603b6aeef57e7b4600e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breastcancerupp/post-link.sh b/recipes/bioconductor-breastcancerupp/post-link.sh index 16a66b82aedf7..0d981bd9913d3 100644 --- a/recipes/bioconductor-breastcancerupp/post-link.sh +++ b/recipes/bioconductor-breastcancerupp/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/breastCancerUPP_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/breastCancerUPP_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-breastcancerupp/bioconductor-breastcancerupp_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-breastcancerupp/bioconductor-breastcancerupp_1.22.0_src_all.tar.gz" ) MD5="2c41fe7534c5a603b6aeef57e7b4600e" diff --git a/recipes/bioconductor-breastcancervdx/meta.yaml b/recipes/bioconductor-breastcancervdx/meta.yaml index e4276dc93d4e3..716448d9ab215 100644 --- a/recipes/bioconductor-breastcancervdx/meta.yaml +++ b/recipes/bioconductor-breastcancervdx/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b437da5fd7abf3b1f10276dd6543217d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-breastcancervdx/post-link.sh b/recipes/bioconductor-breastcancervdx/post-link.sh index 146654fd3f79e..fa3fbcf5b4a40 100644 --- a/recipes/bioconductor-breastcancervdx/post-link.sh +++ b/recipes/bioconductor-breastcancervdx/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/breastCancerVDX_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/breastCancerVDX_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-breastcancervdx/bioconductor-breastcancervdx_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-breastcancervdx/bioconductor-breastcancervdx_1.22.0_src_all.tar.gz" ) MD5="b437da5fd7abf3b1f10276dd6543217d" diff --git a/recipes/bioconductor-brgedata/meta.yaml b/recipes/bioconductor-brgedata/meta.yaml index 706dd334187e0..6f030d4ab6eec 100644 --- a/recipes/bioconductor-brgedata/meta.yaml +++ b/recipes/bioconductor-brgedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cb1cdff76c21aabfa29e0004360532d8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-brgedata/post-link.sh b/recipes/bioconductor-brgedata/post-link.sh index badabad739d48..90d286c6770c6 100644 --- a/recipes/bioconductor-brgedata/post-link.sh +++ b/recipes/bioconductor-brgedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/brgedata_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/brgedata_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-brgedata/bioconductor-brgedata_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-brgedata/bioconductor-brgedata_1.6.0_src_all.tar.gz" ) MD5="cb1cdff76c21aabfa29e0004360532d8" diff --git a/recipes/bioconductor-bridge/meta.yaml b/recipes/bioconductor-bridge/meta.yaml index b11592ba80c28..d72e5fdb37c5f 100644 --- a/recipes/bioconductor-bridge/meta.yaml +++ b/recipes/bioconductor-bridge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 480a9c00864b54d93b8c319a3db68795 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bridgedbr/meta.yaml b/recipes/bioconductor-bridgedbr/meta.yaml index ed6f116c78947..d8d46638b48be 100644 --- a/recipes/bioconductor-bridgedbr/meta.yaml +++ b/recipes/bioconductor-bridgedbr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 791900b33b1997d6e5308c888d4ca2ea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bronchialil13/meta.yaml b/recipes/bioconductor-bronchialil13/meta.yaml index a8422543f9de1..38fc54fb93052 100644 --- a/recipes/bioconductor-bronchialil13/meta.yaml +++ b/recipes/bioconductor-bronchialil13/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a7b5cbe220c3ad028b87560217dca192 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bronchialil13/post-link.sh b/recipes/bioconductor-bronchialil13/post-link.sh index e5575a5fe7528..4076551410f6e 100644 --- a/recipes/bioconductor-bronchialil13/post-link.sh +++ b/recipes/bioconductor-bronchialil13/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/bronchialIL13_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/bronchialIL13_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bronchialil13/bioconductor-bronchialil13_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bronchialil13/bioconductor-bronchialil13_1.22.0_src_all.tar.gz" ) MD5="a7b5cbe220c3ad028b87560217dca192" diff --git a/recipes/bioconductor-browserviz/meta.yaml b/recipes/bioconductor-browserviz/meta.yaml index b86bbbb1c3be2..4ae11104fcfdb 100644 --- a/recipes/bioconductor-browserviz/meta.yaml +++ b/recipes/bioconductor-browserviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 263756ed6328875b0b8f1890a17f3ef5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.alyrata.jgi.v1/meta.yaml b/recipes/bioconductor-bsgenome.alyrata.jgi.v1/meta.yaml index 5e8ccfc26e1c6..3d53f17d789bf 100644 --- a/recipes/bioconductor-bsgenome.alyrata.jgi.v1/meta.yaml +++ b/recipes/bioconductor-bsgenome.alyrata.jgi.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2119e78ebb1957fd55ab186b167e0995 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.amellifera.beebase.assembly4/meta.yaml b/recipes/bioconductor-bsgenome.amellifera.beebase.assembly4/meta.yaml index d63826e2d220d..afc080560e2d8 100644 --- a/recipes/bioconductor-bsgenome.amellifera.beebase.assembly4/meta.yaml +++ b/recipes/bioconductor-bsgenome.amellifera.beebase.assembly4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 77495ee5eba48fe52902c9cc4f9ba7cc build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2.masked/meta.yaml b/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2.masked/meta.yaml index bfdfe0d22b68b..76e0b4ab4c591 100644 --- a/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e7a7ff8cfce8e239b22116855456f23d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2/meta.yaml b/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2/meta.yaml index 7e2b0c3d5f25b..a8bac637adb10 100644 --- a/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2/meta.yaml +++ b/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 436ddf54868906e7d1135369d41a2ffe build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.aofficinalis.ncbi.v1/meta.yaml b/recipes/bioconductor-bsgenome.aofficinalis.ncbi.v1/meta.yaml index 8067ee6e160c7..535db65c52be1 100644 --- a/recipes/bioconductor-bsgenome.aofficinalis.ncbi.v1/meta.yaml +++ b/recipes/bioconductor-bsgenome.aofficinalis.ncbi.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3f8fd13e74eee63895a5ef528004b60b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.athaliana.tair.04232008/meta.yaml b/recipes/bioconductor-bsgenome.athaliana.tair.04232008/meta.yaml index faabfdaa4da1a..a3144acf759bf 100644 --- a/recipes/bioconductor-bsgenome.athaliana.tair.04232008/meta.yaml +++ b/recipes/bioconductor-bsgenome.athaliana.tair.04232008/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6b8a31a228dbcf4468974f5ec1d98467 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.athaliana.tair.tair9/meta.yaml b/recipes/bioconductor-bsgenome.athaliana.tair.tair9/meta.yaml index 7354c387a9572..72a62437d08b1 100644 --- a/recipes/bioconductor-bsgenome.athaliana.tair.tair9/meta.yaml +++ b/recipes/bioconductor-bsgenome.athaliana.tair.tair9/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8c6709a5f544616d59f4d39aac5787a7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3.masked/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3.masked/meta.yaml index e8d1c581ab081..9dcddca828090 100644 --- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 50f7da5907cbe0d08183dc7161a8ca56 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3/meta.yaml index c4d0c1b9270b9..d37b97d344dff 100644 --- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3/meta.yaml +++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fe6c4d5853f91c3db3e716ddbc773580 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4.masked/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4.masked/meta.yaml index a5cf4208cef20..451f7f5159ca4 100644 --- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7c5294349c7061adfb3948bc5659afeb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4/meta.yaml index 9f7ae70436587..426f82c816c23 100644 --- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4/meta.yaml +++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 162cd253c719e347df5748ebb407a191 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6.masked/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6.masked/meta.yaml index 27e7d2cb6688e..76c4b29252fd2 100644 --- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a176de6b1b91854d47e783b8249dbf58 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6/meta.yaml index d50d29a798007..76019329e4536 100644 --- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6/meta.yaml +++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b22391e0678fc3743daa4b77ecc55f66 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau8/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau8/meta.yaml index 0fc59bbe06900..f35d9ae34408f 100644 --- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau8/meta.yaml +++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau8/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 61ababa7b2b5360fceeb06f0bf49b208 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.carietinum.ncbi.v1/meta.yaml b/recipes/bioconductor-bsgenome.carietinum.ncbi.v1/meta.yaml index e105dcd598cb3..1c7a5a90898ca 100644 --- a/recipes/bioconductor-bsgenome.carietinum.ncbi.v1/meta.yaml +++ b/recipes/bioconductor-bsgenome.carietinum.ncbi.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eef018ecce6d32852aa18ac39cf377c6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.celegans.ucsc.ce10/meta.yaml b/recipes/bioconductor-bsgenome.celegans.ucsc.ce10/meta.yaml index 899852e81dc0b..2bf85f8e534a6 100644 --- a/recipes/bioconductor-bsgenome.celegans.ucsc.ce10/meta.yaml +++ b/recipes/bioconductor-bsgenome.celegans.ucsc.ce10/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 98a8ca836d6db23e46674552669d7942 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.celegans.ucsc.ce11/meta.yaml b/recipes/bioconductor-bsgenome.celegans.ucsc.ce11/meta.yaml index 7b4b11ebfc9db..c12727021ddda 100644 --- a/recipes/bioconductor-bsgenome.celegans.ucsc.ce11/meta.yaml +++ b/recipes/bioconductor-bsgenome.celegans.ucsc.ce11/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b80e24149a0c6ed323d0c9a6d112ef52 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.celegans.ucsc.ce2/meta.yaml b/recipes/bioconductor-bsgenome.celegans.ucsc.ce2/meta.yaml index 1b06de4b41e7d..19f5e0046c08b 100644 --- a/recipes/bioconductor-bsgenome.celegans.ucsc.ce2/meta.yaml +++ b/recipes/bioconductor-bsgenome.celegans.ucsc.ce2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b2bf7eec2b07685cf9dcdf42840db208 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.celegans.ucsc.ce6/meta.yaml b/recipes/bioconductor-bsgenome.celegans.ucsc.ce6/meta.yaml index d41c29d53075d..6177135bd4688 100644 --- a/recipes/bioconductor-bsgenome.celegans.ucsc.ce6/meta.yaml +++ b/recipes/bioconductor-bsgenome.celegans.ucsc.ce6/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cb86ff861d8f660c2abd8fc1907d84a6 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked/meta.yaml b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked/meta.yaml index fcad8bbf2497b..43376eb3aad7f 100644 --- a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f921533bb83f83f43b8d227b00a48cb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml index ff38d59cd1473..77e7f16f1f1dc 100644 --- a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml +++ b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b98f5289ed5d362cd815db9352598634 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked/meta.yaml b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked/meta.yaml index 0490881a33f7a..f7d286d241aaa 100644 --- a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8e2246f51fc967dc2ed748cf967a7649 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3/meta.yaml b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3/meta.yaml index 4726c61104209..b56e5e1ef6437 100644 --- a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3/meta.yaml +++ b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: efcdc531042be86f99a734cd69c0688c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml b/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml index d581e85277321..030133a884fef 100644 --- a/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml +++ b/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 41f927aa0d6ffbdaa6ad93c9135409e6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/post-link.sh b/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/post-link.sh index 298d52c3de1ff..f9c1785604c06 100644 --- a/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/post-link.sh +++ b/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/BSgenome.Cjacchus.UCSC.calJac3_1.4.2.tar.gz" "https://bioarchive.galaxyproject.org/BSgenome.Cjacchus.UCSC.calJac3_1.4.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bsgenome.cjacchus.ucsc.caljac3/bioconductor-bsgenome.cjacchus.ucsc.caljac3_1.4.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bsgenome.cjacchus.ucsc.caljac3/bioconductor-bsgenome.cjacchus.ucsc.caljac3_1.4.2_src_all.tar.gz" ) MD5="41f927aa0d6ffbdaa6ad93c9135409e6" diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked/meta.yaml index 56e7bc36642af..e921cfffee329 100644 --- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ae7ca3053e97a0d6bd20bc2b9635ecce build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2/meta.yaml index a66036d83d0e5..53ca2d9f4b8e4 100644 --- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2/meta.yaml +++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ebc88df5595fc7aad588b8f3f7de4784 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked/meta.yaml index 3c6000ddc8151..4f2c06031edba 100644 --- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 592e7ec451d126b2d314ab6c75d86830 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3/meta.yaml index 86d07e66c2a57..b9cb2c2fb7c82 100644 --- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3/meta.yaml +++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b7ceebf7bfee766596f602f9e808d069 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm6/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm6/meta.yaml index dd9c287c523a8..7e0d0d7fcc3fe 100644 --- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm6/meta.yaml +++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm6/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f9d6e406b7893a17c08edd4521c2802f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer10/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer10/meta.yaml index ddbd222c0cef2..1630cc6e50f49 100644 --- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer10/meta.yaml +++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer10/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b8dbcc8a338a021ed35656b27b3dd4c0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5.masked/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5.masked/meta.yaml index a2bdb33cb8917..e5bf66e97cfcf 100644 --- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8f0623bcbe1743754a56c55599b535f3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5/meta.yaml index a6c5dd27c37ea..3346412260a34 100644 --- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5/meta.yaml +++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b1fee4bcc0d9cebb2bbdec5cb851f00d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6.masked/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6.masked/meta.yaml index e0f7aaf6fdd78..aa9ffd28f991e 100644 --- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 71c9b05c27b8d2e05735e6494a8f17ba build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6/meta.yaml index fb22be194ea59..7648dfa35cd58 100644 --- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6/meta.yaml +++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 537d37d29d97ae0c31d77decc67b25b0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7.masked/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7.masked/meta.yaml index 1fd326cb59f28..620ab4c28f2c3 100644 --- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5d68af24477d006ed22e7342ff97ac16 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7/meta.yaml index 97398a832918e..77f3be0e33782 100644 --- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7/meta.yaml +++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 766b407a46f20d69a143eab0809eb10a build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ecoli.ncbi.20080805/meta.yaml b/recipes/bioconductor-bsgenome.ecoli.ncbi.20080805/meta.yaml index 8955aa1eb4b27..222c3d3d4f043 100644 --- a/recipes/bioconductor-bsgenome.ecoli.ncbi.20080805/meta.yaml +++ b/recipes/bioconductor-bsgenome.ecoli.ncbi.20080805/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c653e9cbee3faeb6fd5759b7575f234d build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked/meta.yaml b/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked/meta.yaml index f1c24f71f9b9d..61a5123209438 100644 --- a/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9d9b9e70f4f4624ee4a2b09a59d44510 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1/meta.yaml b/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1/meta.yaml index eee42169fd9e2..5479eef24f661 100644 --- a/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1/meta.yaml +++ b/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 412aa0570d9c556861b7bb9a5bbc2007 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3.masked/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3.masked/meta.yaml index ae3f29438d68d..c8269c49de34a 100644 --- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b3224e3a2b15de379c068e61cedfefa6 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3/meta.yaml index 199568c70f831..ba47641bb0d4b 100644 --- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3/meta.yaml +++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a463e5ccfc8c6d2c62a6ade0da65dbc4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4.masked/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4.masked/meta.yaml index 83bcfd24776d2..39342f2d6d931 100644 --- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0166121ebd8d0b6a4d24d67e175cfe81 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4/meta.yaml index a59834437d247..a75355f90f886 100644 --- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4/meta.yaml +++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c2cb4bfc39db93c060e78d8d12542c11 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal5/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal5/meta.yaml index d12009b150201..d427687e87f86 100644 --- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal5/meta.yaml +++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 93b42354404edd848b21ea6781ca135c build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.hsapiens.1000genomes.hs37d5/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.1000genomes.hs37d5/meta.yaml index 0dc67b3cc3693..0380140c90b4f 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.1000genomes.hs37d5/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.1000genomes.hs37d5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 164e1692d38fefa499c2c8ac5fc22793 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.hsapiens.ncbi.grch38/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ncbi.grch38/meta.yaml index 6f595233442bc..176994ecd5dbf 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ncbi.grch38/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ncbi.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 733d324b34d34d7da8c4bf38459f4fae build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/meta.yaml index 7f5aecd019f3b..7442ab4f1498f 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ff6ee5196f234c5a2a3bcdd052c3c08e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ @@ -20,11 +20,11 @@ build: requirements: host: - 'bioconductor-bsgenome >=1.52.0,<1.53.0' - - 'bioconductor-bsgenome.hsapiens.ucsc.hg17 >=1.4.0,<1.5.0' + - 'bioconductor-bsgenome.hsapiens.ucsc.hg17 >=1.3.0,<1.4.0' - r-base run: - 'bioconductor-bsgenome >=1.52.0,<1.53.0' - - 'bioconductor-bsgenome.hsapiens.ucsc.hg17 >=1.4.0,<1.5.0' + - 'bioconductor-bsgenome.hsapiens.ucsc.hg17 >=1.3.0,<1.4.0' - r-base - curl test: diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17/meta.yaml index fb9f20df25141..786d4501fdc4f 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cbea3029c3d3125a88e6c061c3d3abde build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18.masked/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18.masked/meta.yaml index 9eac2fb3cdd81..32fc7d544ccda 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e6a31e3cba34ce5e0eb6f76d2c19870c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ @@ -20,11 +20,11 @@ build: requirements: host: - 'bioconductor-bsgenome >=1.52.0,<1.53.0' - - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.4.0,<1.5.0' + - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0' - r-base run: - 'bioconductor-bsgenome >=1.52.0,<1.53.0' - - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.4.0,<1.5.0' + - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0' - r-base - curl test: diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18/meta.yaml index cd8fb036d30d8..240057282d0eb 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 51bb2e1ed4009860bb21aaac32fffd9c build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19.masked/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19.masked/meta.yaml index efe28a6a3c245..5066a4e1a7d7f 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8abeb2afb811e1a38cf822d1bc0cb50a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml index 5f9658921556d..1c86862c7fc46 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 672a988b28d8602afb2bd5595db7303b build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.masked/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.masked/meta.yaml index d0c4b6cf3c276..e8a24806a2291 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 50c9fc14be05113dc56651ea7a49beb1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml index d0e19e1bfd971..83208dbcd3fdc 100644 --- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml +++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1b95bfdc9763351b04611666cd624b30 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/meta.yaml b/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/meta.yaml index 1cb5cde4e07e2..ad3bb46a69470 100644 --- a/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/meta.yaml +++ b/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ff940f7446a275962f69a6f4cb84724c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/post-link.sh b/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/post-link.sh index 4abe6464058ad..db977665e289d 100644 --- a/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/post-link.sh +++ b/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/BSgenome.Mdomestica.UCSC.monDom5_1.4.2.tar.gz" "https://bioarchive.galaxyproject.org/BSgenome.Mdomestica.UCSC.monDom5_1.4.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bsgenome.mdomestica.ucsc.mondom5/bioconductor-bsgenome.mdomestica.ucsc.mondom5_1.4.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bsgenome.mdomestica.ucsc.mondom5/bioconductor-bsgenome.mdomestica.ucsc.mondom5_1.4.2_src_all.tar.gz" ) MD5="ff940f7446a275962f69a6f4cb84724c" diff --git a/recipes/bioconductor-bsgenome.mfascicularis.ncbi.5.0/meta.yaml b/recipes/bioconductor-bsgenome.mfascicularis.ncbi.5.0/meta.yaml index ad35f20f296bb..8074085713e5e 100644 --- a/recipes/bioconductor-bsgenome.mfascicularis.ncbi.5.0/meta.yaml +++ b/recipes/bioconductor-bsgenome.mfascicularis.ncbi.5.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dba6ade39dc6b4f6d06f488141b5550b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mfuro.ucsc.musfur1/meta.yaml b/recipes/bioconductor-bsgenome.mfuro.ucsc.musfur1/meta.yaml index 659c495a0524a..ea621f4621255 100644 --- a/recipes/bioconductor-bsgenome.mfuro.ucsc.musfur1/meta.yaml +++ b/recipes/bioconductor-bsgenome.mfuro.ucsc.musfur1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c33e71746ce551bcbcd22be1979aee63 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked/meta.yaml index 02d4af8cef228..c2ac54e7b481e 100644 --- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7602d86b68df7e4c8d336fede4090a62 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2/meta.yaml index 44ababa2c036e..3bab5258d1301 100644 --- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 90c43e127e76dfd7cea90de9e1af9a50 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked/meta.yaml index 9299cdfd62e4e..3a190359ffa3f 100644 --- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 94f8714865655d3144e14f6fc5c24e76 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3/meta.yaml index 6e5a0c658ce94..9a959c3de003e 100644 --- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dfa1ecb9d0bb7a5d9fa628092fb1c354 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac8/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac8/meta.yaml index aba6b1c9142ca..60975c1f0f8a8 100644 --- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac8/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac8/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e9ad1f70f652c62554e2c5af7638c015 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10.masked/meta.yaml index 388415d826fa7..d54874d5e6991 100644 --- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c6a5365fa1a0d2a5ecb63752960eb3d7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml index 3e83c965f24b3..89dc29eb91d05 100644 --- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 929f8bd0ea9ad416ecc0c2c002500414 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked/meta.yaml index 9f23d31da202c..2f85e0fe004d7 100644 --- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5809f925e0fe7c4b73b78a90c9a36fdd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8/meta.yaml index 7c7cd90cde27b..5ac832476269c 100644 --- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f6aa91cdce2607f30a34f6dd0d678aff build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked/meta.yaml index 0d120a1012f2b..703a0779aac13 100644 --- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a5dadab14e55cdfc39649ede7a8483d5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml index 75fbb5ed12021..85640fb63e7d9 100644 --- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml +++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5a30ba2b4481a17e8e6979eb69eabf78 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.osativa.msu.msu7/meta.yaml b/recipes/bioconductor-bsgenome.osativa.msu.msu7/meta.yaml index 2a5d9439d6b43..0f89f48266647 100644 --- a/recipes/bioconductor-bsgenome.osativa.msu.msu7/meta.yaml +++ b/recipes/bioconductor-bsgenome.osativa.msu.msu7/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 459fe50be785d06ab680565aacca1c57 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked/meta.yaml index aae753763bcbd..a48a28ef2984d 100644 --- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e6d069be23712b483b4e4c71554594cf build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2/meta.yaml index 282d862c88123..33fc2ab38723e 100644 --- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2/meta.yaml +++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 780200c315779ac75fcf0bdeb9a2eb8c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked/meta.yaml index 9bd7f10e1afff..4c805b8855053 100644 --- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89e96b3796d3b8e8793146597506e3f5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml index deea19e56463e..e6c69dacfac25 100644 --- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml +++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4677c75befd60742f3fc2a54c7f60666 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro5/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro5/meta.yaml index 04a4e667f0e83..ee728edd34b3f 100644 --- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro5/meta.yaml +++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5b88573dd9c3ef838699b65934f8abe3 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro6/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro6/meta.yaml index 682ab01c29989..6a1543108f6af 100644 --- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro6/meta.yaml +++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro6/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1df05d985374e9edc1dd7c3df5118338 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked/meta.yaml index afa07a9a37e2e..5d6df54740e22 100644 --- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7e2ea7df588b6b10515e07ea3868c568 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4/meta.yaml index f7fe0c6568dd9..b6bd2e97928e2 100644 --- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4/meta.yaml +++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3afe6729237781445d99ec38228ee1a8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml index f90c7c2767121..2979a43a87bb4 100644 --- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 663233774b79012cb2cc08224ac275ed build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5/meta.yaml index 66e5fdd5ab546..601726910e5c6 100644 --- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5/meta.yaml +++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 723b1f3ced395ef638b2d68053b05c86 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn6/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn6/meta.yaml index 4f8b699400427..e40300b09c923 100644 --- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn6/meta.yaml +++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn6/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 60d3fb201e0b1475912aaf681927096d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer1/meta.yaml b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer1/meta.yaml index ba834fe85f262..db874a3572b83 100644 --- a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer1/meta.yaml +++ b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ad4c29c16a9635088bf13872b4a02ed4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer2/meta.yaml b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer2/meta.yaml index e6a734b6ee95f..9e68c42fddd78 100644 --- a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer2/meta.yaml +++ b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1025b4d0fa7891dc46301550163753e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer3/meta.yaml b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer3/meta.yaml index b385dab2ebf54..a231c53d1c6a9 100644 --- a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer3/meta.yaml +++ b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7f2d8bba69c3dcebf426d9b19a6bed30 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr11/meta.yaml b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr11/meta.yaml index d1440f317f831..8520c72159095 100644 --- a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr11/meta.yaml +++ b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr11/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: db22832229e31e1a629d107df522dff9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked/meta.yaml b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked/meta.yaml index bed5cd19c49c2..7ec91b1a1e3d2 100644 --- a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd240651d22d169fd1e27a2b66e40dd7 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3/meta.yaml b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3/meta.yaml index 0203ef20b838f..0c5215b5191b9 100644 --- a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3/meta.yaml +++ b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0457ca52a81c9d7ceadad5830169e6cf build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.tgondii.toxodb.7.0/meta.yaml b/recipes/bioconductor-bsgenome.tgondii.toxodb.7.0/meta.yaml index f947b64499560..30041fd6b55f6 100644 --- a/recipes/bioconductor-bsgenome.tgondii.toxodb.7.0/meta.yaml +++ b/recipes/bioconductor-bsgenome.tgondii.toxodb.7.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8f204871f73f8d1c5194f3748e28878e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml index e938ed4913c03..7c9c48667fd7a 100644 --- a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml +++ b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 63684abb5b330bb54ff89fe78f2e6444 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1/meta.yaml b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1/meta.yaml index 775ac462eff7e..9c63bc8979579 100644 --- a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1/meta.yaml +++ b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9753d9568d2a866a627673a518a1dd8a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut2/meta.yaml b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut2/meta.yaml index 1ca2004680554..a4c2bb5cf04d5 100644 --- a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut2/meta.yaml +++ b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1d39678fb060e643f7e9c4ec25e828c0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/meta.yaml b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/meta.yaml index b8e46dc0ee62e..e5b48407995ae 100644 --- a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/meta.yaml +++ b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3f791de6d699325a97080cd98be86d89 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml index 0fbb9460960d6..3528ca86e5af3 100644 --- a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml +++ b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 95472e574ab46327c19e241c381b26a2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp8x/meta.yaml b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp8x/meta.yaml index b0135383851db..79176a3558b38 100644 --- a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp8x/meta.yaml +++ b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp8x/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fccaf60e5c9352b9c454f7a8ecac2a20 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsgenome/meta.yaml b/recipes/bioconductor-bsgenome/meta.yaml index 58613741157ce..ec561fab03242 100644 --- a/recipes/bioconductor-bsgenome/meta.yaml +++ b/recipes/bioconductor-bsgenome/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6af1de03fa89f6a029a86d70ea8e9fe8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsseq/meta.yaml b/recipes/bioconductor-bsseq/meta.yaml index 8e399b266a5e7..dc3ce70de56d4 100644 --- a/recipes/bioconductor-bsseq/meta.yaml +++ b/recipes/bioconductor-bsseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fafc60de775b2523fd161a7711106a9a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsseqdata/meta.yaml b/recipes/bioconductor-bsseqdata/meta.yaml index 5859717e85a6c..b881655b9bc63 100644 --- a/recipes/bioconductor-bsseqdata/meta.yaml +++ b/recipes/bioconductor-bsseqdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e7675043ef714d778044e826b0dd2b1d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsseqdata/post-link.sh b/recipes/bioconductor-bsseqdata/post-link.sh index bbaf0cfae382c..855448c34a722 100644 --- a/recipes/bioconductor-bsseqdata/post-link.sh +++ b/recipes/bioconductor-bsseqdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/bsseqData_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/bsseqData_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-bsseqdata/bioconductor-bsseqdata_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-bsseqdata/bioconductor-bsseqdata_0.22.0_src_all.tar.gz" ) MD5="e7675043ef714d778044e826b0dd2b1d" diff --git a/recipes/bioconductor-bsubtiliscdf/meta.yaml b/recipes/bioconductor-bsubtiliscdf/meta.yaml index 2fac17b09d610..a91e7f408bd67 100644 --- a/recipes/bioconductor-bsubtiliscdf/meta.yaml +++ b/recipes/bioconductor-bsubtiliscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7d7893d28c601206805819ae0e49b31b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bsubtilisprobe/meta.yaml b/recipes/bioconductor-bsubtilisprobe/meta.yaml index 67ae6faa414c2..68c4faa03c6c3 100644 --- a/recipes/bioconductor-bsubtilisprobe/meta.yaml +++ b/recipes/bioconductor-bsubtilisprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 83568fcea2122350b7ce982e79b7ec53 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bubbletree/meta.yaml b/recipes/bioconductor-bubbletree/meta.yaml index 1b1fedf3f5f0c..ccb8da3e98556 100644 --- a/recipes/bioconductor-bubbletree/meta.yaml +++ b/recipes/bioconductor-bubbletree/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 742ca18c07acb22717ae1dea849bed4a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bufferedmatrix/meta.yaml b/recipes/bioconductor-bufferedmatrix/meta.yaml index cff7fb9ad4d08..2d6e93cc1acce 100644 --- a/recipes/bioconductor-bufferedmatrix/meta.yaml +++ b/recipes/bioconductor-bufferedmatrix/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c4fbf25d9fb604528e65ad5c8fb14309 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bufferedmatrixmethods/meta.yaml b/recipes/bioconductor-bufferedmatrixmethods/meta.yaml index 6a0003bc2c095..c0824b2b1c773 100644 --- a/recipes/bioconductor-bufferedmatrixmethods/meta.yaml +++ b/recipes/bioconductor-bufferedmatrixmethods/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8a3abe17de06403a2ea5ead96663ef3f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bumhmm/meta.yaml b/recipes/bioconductor-bumhmm/meta.yaml index ea40a5e934536..a88fd90a1f115 100644 --- a/recipes/bioconductor-bumhmm/meta.yaml +++ b/recipes/bioconductor-bumhmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: abc7caecb419e680be1f0a5523c2a71a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bumphunter/meta.yaml b/recipes/bioconductor-bumphunter/meta.yaml index 2d7eeb772a0f1..93416f00000d8 100644 --- a/recipes/bioconductor-bumphunter/meta.yaml +++ b/recipes/bioconductor-bumphunter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e25e9e6a64a16dcef24c87e798527c93 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-bus/meta.yaml b/recipes/bioconductor-bus/meta.yaml index 6607ab6b27b7d..191b7e00913fb 100644 --- a/recipes/bioconductor-bus/meta.yaml +++ b/recipes/bioconductor-bus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ff29430aa926268c7089a76acc9f2844 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-buscorrect/meta.yaml b/recipes/bioconductor-buscorrect/meta.yaml index 9350c15a56eca..7e649dfe488fe 100644 --- a/recipes/bioconductor-buscorrect/meta.yaml +++ b/recipes/bioconductor-buscorrect/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.1" %} {% set name = "BUScorrect" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 9feb05c8c1adf79f5c5aa54125456483 + md5: acc675473fb5e47ec6e364c4edbe4461 build: number: 0 rpaths: diff --git a/recipes/bioconductor-cafe/meta.yaml b/recipes/bioconductor-cafe/meta.yaml index ceb00c5e8f505..0a19628829acb 100644 --- a/recipes/bioconductor-cafe/meta.yaml +++ b/recipes/bioconductor-cafe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4aa05a6bf30967eec73b6a616e1c0a00 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cagefightr/meta.yaml b/recipes/bioconductor-cagefightr/meta.yaml index 02aefd829ab29..99be9b27edbef 100644 --- a/recipes/bioconductor-cagefightr/meta.yaml +++ b/recipes/bioconductor-cagefightr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b4d4fe760ca5f2d924c4ad980502a530 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cager/meta.yaml b/recipes/bioconductor-cager/meta.yaml index aacd4ab26ad51..35018e5582faa 100644 --- a/recipes/bioconductor-cager/meta.yaml +++ b/recipes/bioconductor-cager/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a772349f5b6bdf941e81f52030ee226a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-calib/meta.yaml b/recipes/bioconductor-calib/meta.yaml index bc667078e065c..39282de673804 100644 --- a/recipes/bioconductor-calib/meta.yaml +++ b/recipes/bioconductor-calib/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9c5e453a09daa9f258cc2c396d127781 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-camera/meta.yaml b/recipes/bioconductor-camera/meta.yaml index 2d7ffac95175a..c212a10607aef 100644 --- a/recipes/bioconductor-camera/meta.yaml +++ b/recipes/bioconductor-camera/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b69c86dafe1b112ee23bfce67a9725a3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-camthc/meta.yaml b/recipes/bioconductor-camthc/meta.yaml index 951b5cdbbade7..7d181cc8213b7 100644 --- a/recipes/bioconductor-camthc/meta.yaml +++ b/recipes/bioconductor-camthc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 29259f9a6a2be58c0e648edf17b0adc9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cancer/meta.yaml b/recipes/bioconductor-cancer/meta.yaml index 5035504046d86..a403135b9eed7 100644 --- a/recipes/bioconductor-cancer/meta.yaml +++ b/recipes/bioconductor-cancer/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.6" %} {% set name = "canceR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: bf364aa1ed5ae2d3502f26e5a4e01bba + md5: 224f80420e3ed97661de974c54b61d6d build: number: 0 rpaths: @@ -23,7 +23,6 @@ requirements: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-genetclassifier >=1.24.0,<1.25.0' - 'bioconductor-gseabase >=1.46.0,<1.47.0' - - 'bioconductor-gsealm >=1.44.0,<1.45.0' - 'bioconductor-phenotest >=1.32.0,<1.33.0' - r-base - r-cgdsr @@ -39,7 +38,6 @@ requirements: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-genetclassifier >=1.24.0,<1.25.0' - 'bioconductor-gseabase >=1.46.0,<1.47.0' - - 'bioconductor-gsealm >=1.44.0,<1.45.0' - 'bioconductor-phenotest >=1.32.0,<1.33.0' - r-base - r-cgdsr diff --git a/recipes/bioconductor-cancerclass/meta.yaml b/recipes/bioconductor-cancerclass/meta.yaml index b59ab8762a1bc..185a5c7dd7174 100644 --- a/recipes/bioconductor-cancerclass/meta.yaml +++ b/recipes/bioconductor-cancerclass/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 96e541e72420dee85bc2abcb91ff3f36 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cancerdata/meta.yaml b/recipes/bioconductor-cancerdata/meta.yaml index 00a6a584b7e1e..93e75b28ac72f 100644 --- a/recipes/bioconductor-cancerdata/meta.yaml +++ b/recipes/bioconductor-cancerdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e7527824c67a7dc60e2345b78ee01da7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cancerdata/post-link.sh b/recipes/bioconductor-cancerdata/post-link.sh index 62a48680917c4..5aed3a0bc7015 100644 --- a/recipes/bioconductor-cancerdata/post-link.sh +++ b/recipes/bioconductor-cancerdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/cancerdata_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/cancerdata_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cancerdata/bioconductor-cancerdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cancerdata/bioconductor-cancerdata_1.22.0_src_all.tar.gz" ) MD5="e7527824c67a7dc60e2345b78ee01da7" diff --git a/recipes/bioconductor-cancerinsilico/meta.yaml b/recipes/bioconductor-cancerinsilico/meta.yaml index c901bf3f83402..4a0346d4ac519 100644 --- a/recipes/bioconductor-cancerinsilico/meta.yaml +++ b/recipes/bioconductor-cancerinsilico/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 19bdc49294e17f67b6cffbc0fd53e67b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cancermutationanalysis/meta.yaml b/recipes/bioconductor-cancermutationanalysis/meta.yaml index 31f8ae2fe958d..84cd2d62fbda1 100644 --- a/recipes/bioconductor-cancermutationanalysis/meta.yaml +++ b/recipes/bioconductor-cancermutationanalysis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b68cb94aaffc396c1fb4db092acbae91 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cancersubtypes/meta.yaml b/recipes/bioconductor-cancersubtypes/meta.yaml index dfece30ba2130..6768d58eac462 100644 --- a/recipes/bioconductor-cancersubtypes/meta.yaml +++ b/recipes/bioconductor-cancersubtypes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cfa0a35941d1046859161ffd2fbacb9f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cand/meta.yaml b/recipes/bioconductor-cand/meta.yaml index 0586c99e87b7f..37c5062f2d5f3 100644 --- a/recipes/bioconductor-cand/meta.yaml +++ b/recipes/bioconductor-cand/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b37b73d94fb166e98936f40b91f3f3f3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-canine.db/meta.yaml b/recipes/bioconductor-canine.db/meta.yaml index f93bba976d643..1159a97ea794a 100644 --- a/recipes/bioconductor-canine.db/meta.yaml +++ b/recipes/bioconductor-canine.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 313097118354c68b3b6fb348eb55720e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-canine.db0/meta.yaml b/recipes/bioconductor-canine.db0/meta.yaml index 211ebc1206dda..48ec9c7e38bde 100644 --- a/recipes/bioconductor-canine.db0/meta.yaml +++ b/recipes/bioconductor-canine.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 56742a475a81dacaedd6c100df27eff0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-canine.db0/post-link.sh b/recipes/bioconductor-canine.db0/post-link.sh index 0ea5cb0165c78..89572bfd1a713 100644 --- a/recipes/bioconductor-canine.db0/post-link.sh +++ b/recipes/bioconductor-canine.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/canine.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/canine.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-canine.db0/bioconductor-canine.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-canine.db0/bioconductor-canine.db0_3.8.2_src_all.tar.gz" ) MD5="56742a475a81dacaedd6c100df27eff0" diff --git a/recipes/bioconductor-canine2.db/meta.yaml b/recipes/bioconductor-canine2.db/meta.yaml index 76a819eef7fae..2a3a056187dd2 100644 --- a/recipes/bioconductor-canine2.db/meta.yaml +++ b/recipes/bioconductor-canine2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5c393ea8e91c4d3eb08137bc2f301ca7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-canine2cdf/meta.yaml b/recipes/bioconductor-canine2cdf/meta.yaml index 1bcc0449fa091..3b3701cbb5510 100644 --- a/recipes/bioconductor-canine2cdf/meta.yaml +++ b/recipes/bioconductor-canine2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 78740cde98c75e6680470564a4df74c3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-canine2probe/meta.yaml b/recipes/bioconductor-canine2probe/meta.yaml index 98e0d86022110..b45ccb6d70d05 100644 --- a/recipes/bioconductor-canine2probe/meta.yaml +++ b/recipes/bioconductor-canine2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7de0f4ea616e8662dc2eaa9ab78d1f13 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-caninecdf/meta.yaml b/recipes/bioconductor-caninecdf/meta.yaml index beebb3e4a3441..c3ddbde8a8989 100644 --- a/recipes/bioconductor-caninecdf/meta.yaml +++ b/recipes/bioconductor-caninecdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 656f845cc66890015a4e13c5304ec262 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-canineprobe/meta.yaml b/recipes/bioconductor-canineprobe/meta.yaml index 43604203c215c..7bf9da9d7e63c 100644 --- a/recipes/bioconductor-canineprobe/meta.yaml +++ b/recipes/bioconductor-canineprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e5467bc9b7e54c5adce6b409ba7df767 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-caomicsv/meta.yaml b/recipes/bioconductor-caomicsv/meta.yaml index 1277f67c74a2e..833e7a2ad47d7 100644 --- a/recipes/bioconductor-caomicsv/meta.yaml +++ b/recipes/bioconductor-caomicsv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 94c63ecbfe0401c88974fa774831ed1e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cardinal/meta.yaml b/recipes/bioconductor-cardinal/meta.yaml index 5fb65b79aae2b..7245d0d5fc917 100644 --- a/recipes/bioconductor-cardinal/meta.yaml +++ b/recipes/bioconductor-cardinal/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.2.0" %} +{% set version = "2.2.6" %} {% set name = "Cardinal" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: f48e36871776ac1321b1c6de73d23345 + md5: f4dd2c9ae659f7fdb6df6075bb89ccd1 build: number: 0 rpaths: diff --git a/recipes/bioconductor-cardinalworkflows/meta.yaml b/recipes/bioconductor-cardinalworkflows/meta.yaml index 8e7ee81e28260..990c34e6d6133 100644 --- a/recipes/bioconductor-cardinalworkflows/meta.yaml +++ b/recipes/bioconductor-cardinalworkflows/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1d61193cff92e95a54c8a79cf2148ba7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cardinalworkflows/post-link.sh b/recipes/bioconductor-cardinalworkflows/post-link.sh index 4176d5c96401f..0fb0a3529efe8 100644 --- a/recipes/bioconductor-cardinalworkflows/post-link.sh +++ b/recipes/bioconductor-cardinalworkflows/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CardinalWorkflows_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/CardinalWorkflows_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cardinalworkflows/bioconductor-cardinalworkflows_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cardinalworkflows/bioconductor-cardinalworkflows_1.16.0_src_all.tar.gz" ) MD5="1d61193cff92e95a54c8a79cf2148ba7" diff --git a/recipes/bioconductor-casper/meta.yaml b/recipes/bioconductor-casper/meta.yaml index 3d1f8b68702ac..8bdcce8af9d7c 100644 --- a/recipes/bioconductor-casper/meta.yaml +++ b/recipes/bioconductor-casper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6217e8fdb4348566354428667313e3f4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-catalyst/meta.yaml b/recipes/bioconductor-catalyst/meta.yaml index a8bfaccae9d60..3a9c50200a44f 100644 --- a/recipes/bioconductor-catalyst/meta.yaml +++ b/recipes/bioconductor-catalyst/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.6" %} {% set name = "CATALYST" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: f0438af8c6a337b96c52bb5d190a5b1b + md5: 8ca01f8bfec950012feb2479f6bf84c3 build: number: 0 rpaths: diff --git a/recipes/bioconductor-category/meta.yaml b/recipes/bioconductor-category/meta.yaml index 6d229e59d44ad..26e627dde22f2 100644 --- a/recipes/bioconductor-category/meta.yaml +++ b/recipes/bioconductor-category/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 610c7927a696661781795a3d1ca41539 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-categorycompare/meta.yaml b/recipes/bioconductor-categorycompare/meta.yaml index b1a23137dd007..6bb32130dd8f8 100644 --- a/recipes/bioconductor-categorycompare/meta.yaml +++ b/recipes/bioconductor-categorycompare/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d3bd6209e65811fef8df62ffb93bd150 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -33,7 +33,6 @@ requirements: - r-base - r-colorspace - r-hwriter - - cytoscape >=3.6.1 run: - 'bioconductor-annotate >=1.62.0,<1.63.0' - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' @@ -47,7 +46,6 @@ requirements: - r-base - r-colorspace - r-hwriter - - cytoscape >=3.6.1 test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-causalr/meta.yaml b/recipes/bioconductor-causalr/meta.yaml index 1651ecc0e46f6..8058447bb59c2 100644 --- a/recipes/bioconductor-causalr/meta.yaml +++ b/recipes/bioconductor-causalr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e1eee612fc9cb8f492e5d61d5cb07823 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cbaf/meta.yaml b/recipes/bioconductor-cbaf/meta.yaml index 7b5327ccc70c5..dabd20724f1a4 100644 --- a/recipes/bioconductor-cbaf/meta.yaml +++ b/recipes/bioconductor-cbaf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 41ce506cab60b7ac4d85c024f43eca84 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ccdata/meta.yaml b/recipes/bioconductor-ccdata/meta.yaml index 27f374e640ecf..1596b4c669134 100644 --- a/recipes/bioconductor-ccdata/meta.yaml +++ b/recipes/bioconductor-ccdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5b120a35642d1ef94a586f18fc5fc7d5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ccdata/post-link.sh b/recipes/bioconductor-ccdata/post-link.sh index ba8347684d51d..198a8e5c10d28 100644 --- a/recipes/bioconductor-ccdata/post-link.sh +++ b/recipes/bioconductor-ccdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ccdata_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/ccdata_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ccdata/bioconductor-ccdata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ccdata/bioconductor-ccdata_1.10.0_src_all.tar.gz" ) MD5="5b120a35642d1ef94a586f18fc5fc7d5" diff --git a/recipes/bioconductor-ccfindr/meta.yaml b/recipes/bioconductor-ccfindr/meta.yaml index cc48952df7339..2e3dad45e29cc 100644 --- a/recipes/bioconductor-ccfindr/meta.yaml +++ b/recipes/bioconductor-ccfindr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.2" %} {% set name = "ccfindR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 13cbf66d6dfc90661a5b2b1604aa2f6b + md5: 5c96d645ad4077e82910b32f4f7ae838 build: number: 0 rpaths: diff --git a/recipes/bioconductor-ccl4/meta.yaml b/recipes/bioconductor-ccl4/meta.yaml index 4e764729a0313..5c766110da6cb 100644 --- a/recipes/bioconductor-ccl4/meta.yaml +++ b/recipes/bioconductor-ccl4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 465604e9af49594dd9bfdfe6c059edc1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ccl4/post-link.sh b/recipes/bioconductor-ccl4/post-link.sh index 96adbcab70c19..6c7cb1a6c40f6 100644 --- a/recipes/bioconductor-ccl4/post-link.sh +++ b/recipes/bioconductor-ccl4/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CCl4_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/CCl4_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ccl4/bioconductor-ccl4_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ccl4/bioconductor-ccl4_1.22.0_src_all.tar.gz" ) MD5="465604e9af49594dd9bfdfe6c059edc1" diff --git a/recipes/bioconductor-ccmap/meta.yaml b/recipes/bioconductor-ccmap/meta.yaml index 6824f07b913e4..aac819ca6d88a 100644 --- a/recipes/bioconductor-ccmap/meta.yaml +++ b/recipes/bioconductor-ccmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4d904def7978b58e57ea2bd1a941179f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ccpromise/meta.yaml b/recipes/bioconductor-ccpromise/meta.yaml index 89b0557d1ff77..7238f739e7e78 100644 --- a/recipes/bioconductor-ccpromise/meta.yaml +++ b/recipes/bioconductor-ccpromise/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c914d856d7feb2613b26d682f881a9ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ccrepe/meta.yaml b/recipes/bioconductor-ccrepe/meta.yaml index 1fd201bceccbe..2ef0e17055ac4 100644 --- a/recipes/bioconductor-ccrepe/meta.yaml +++ b/recipes/bioconductor-ccrepe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a6aec5acadb248eb94a14fa114bbc658 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cctutorial/meta.yaml b/recipes/bioconductor-cctutorial/meta.yaml index 69a03dc773586..3532d156a8058 100644 --- a/recipes/bioconductor-cctutorial/meta.yaml +++ b/recipes/bioconductor-cctutorial/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9a7ab28f231b5b046e61a1fa80385ef3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cctutorial/post-link.sh b/recipes/bioconductor-cctutorial/post-link.sh index d98d83b43994b..1bbde215d0cac 100644 --- a/recipes/bioconductor-cctutorial/post-link.sh +++ b/recipes/bioconductor-cctutorial/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ccTutorial_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ccTutorial_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cctutorial/bioconductor-cctutorial_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cctutorial/bioconductor-cctutorial_1.22.0_src_all.tar.gz" ) MD5="9a7ab28f231b5b046e61a1fa80385ef3" diff --git a/recipes/bioconductor-celaref/meta.yaml b/recipes/bioconductor-celaref/meta.yaml index a893707152ccd..650ceb95d94c5 100644 --- a/recipes/bioconductor-celaref/meta.yaml +++ b/recipes/bioconductor-celaref/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 050a0789e0fa54d29ff8ddb134e05710 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-celarefdata/meta.yaml b/recipes/bioconductor-celarefdata/meta.yaml index 25e25e50c92e4..0ae9184d8c94d 100644 --- a/recipes/bioconductor-celarefdata/meta.yaml +++ b/recipes/bioconductor-celarefdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 45c742f3a1047a409cc2ab112c2712e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-celarefdata/post-link.sh b/recipes/bioconductor-celarefdata/post-link.sh index f4d8fc87f3a80..aeba60ee8187b 100644 --- a/recipes/bioconductor-celarefdata/post-link.sh +++ b/recipes/bioconductor-celarefdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/celarefData_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/celarefData_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-celarefdata/bioconductor-celarefdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-celarefdata/bioconductor-celarefdata_1.2.0_src_all.tar.gz" ) MD5="45c742f3a1047a409cc2ab112c2712e7" diff --git a/recipes/bioconductor-celda/meta.yaml b/recipes/bioconductor-celda/meta.yaml index 5f5186fbff6a4..c513d67d7ec9f 100644 --- a/recipes/bioconductor-celda/meta.yaml +++ b/recipes/bioconductor-celda/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.4" %} {% set name = "celda" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 3ebbc9c388bfabc68ede6165fd4a675f + md5: 678f559bbbd77209da6b871e4be4b328 build: number: 0 rpaths: @@ -43,6 +43,7 @@ requirements: - r-scales - r-stringi - r-umap + - r-withr run: - 'bioconductor-mast >=1.10.0,<1.11.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' @@ -68,6 +69,7 @@ requirements: - r-scales - r-stringi - r-umap + - r-withr build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-celegans.db/meta.yaml b/recipes/bioconductor-celegans.db/meta.yaml index ee139285499ff..a87d228b2dbc1 100644 --- a/recipes/bioconductor-celegans.db/meta.yaml +++ b/recipes/bioconductor-celegans.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fb4631ee29a20c20d5766aed4c04cac1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-celeganscdf/meta.yaml b/recipes/bioconductor-celeganscdf/meta.yaml index c69c8e448bf89..a584358545d73 100644 --- a/recipes/bioconductor-celeganscdf/meta.yaml +++ b/recipes/bioconductor-celeganscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1098cd99bfc5000bf9858e4a3acaf452 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-celegansprobe/meta.yaml b/recipes/bioconductor-celegansprobe/meta.yaml index bd8a7d77eeafb..61399b70ea390 100644 --- a/recipes/bioconductor-celegansprobe/meta.yaml +++ b/recipes/bioconductor-celegansprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7454bba10ff2dd7c03bfe0f9d450f148 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellbaser/meta.yaml b/recipes/bioconductor-cellbaser/meta.yaml index 26dd2e734d69e..2727bae5c8732 100644 --- a/recipes/bioconductor-cellbaser/meta.yaml +++ b/recipes/bioconductor-cellbaser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 50b708255d2fa47c96c4db9d5918ec85 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellbench/meta.yaml b/recipes/bioconductor-cellbench/meta.yaml index 56c2a80825e63..e90ddb6a585b0 100644 --- a/recipes/bioconductor-cellbench/meta.yaml +++ b/recipes/bioconductor-cellbench/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a77973ea7c9f31801559a17a7251af96 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellgrowth/meta.yaml b/recipes/bioconductor-cellgrowth/meta.yaml index 4706304871547..241ab8c4be0e0 100644 --- a/recipes/bioconductor-cellgrowth/meta.yaml +++ b/recipes/bioconductor-cellgrowth/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 25a0f256421f38c8a6fd36b95900aacc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellhts2/meta.yaml b/recipes/bioconductor-cellhts2/meta.yaml index 69c4406d12299..7372384f6d270 100644 --- a/recipes/bioconductor-cellhts2/meta.yaml +++ b/recipes/bioconductor-cellhts2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 47d1c36b22194c71761ee17bf05f35b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellity/meta.yaml b/recipes/bioconductor-cellity/meta.yaml index ac9e5e84ba86a..5290729b2a1a7 100644 --- a/recipes/bioconductor-cellity/meta.yaml +++ b/recipes/bioconductor-cellity/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 292c57c85e717761e9acefbfab0e4894 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellmapper/meta.yaml b/recipes/bioconductor-cellmapper/meta.yaml index 81793ec006681..f4fd9dc82625b 100644 --- a/recipes/bioconductor-cellmapper/meta.yaml +++ b/recipes/bioconductor-cellmapper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 46b337915bc344f73f8942e2f20f7f09 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellmapperdata/meta.yaml b/recipes/bioconductor-cellmapperdata/meta.yaml index 47cc9d7f94302..fa19646ae92f9 100644 --- a/recipes/bioconductor-cellmapperdata/meta.yaml +++ b/recipes/bioconductor-cellmapperdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ad6ececf308dc29a5ebc1e56a6bf7632 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellmapperdata/post-link.sh b/recipes/bioconductor-cellmapperdata/post-link.sh index 8171103a1dce2..a60ae80aed5ea 100644 --- a/recipes/bioconductor-cellmapperdata/post-link.sh +++ b/recipes/bioconductor-cellmapperdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CellMapperData_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/CellMapperData_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cellmapperdata/bioconductor-cellmapperdata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cellmapperdata/bioconductor-cellmapperdata_1.10.0_src_all.tar.gz" ) MD5="ad6ececf308dc29a5ebc1e56a6bf7632" diff --git a/recipes/bioconductor-cellmixs/meta.yaml b/recipes/bioconductor-cellmixs/meta.yaml index 80e177b249589..3266dddc0f052 100644 --- a/recipes/bioconductor-cellmixs/meta.yaml +++ b/recipes/bioconductor-cellmixs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2cbd063d78358d8bbaa59042397917ec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellnoptr/meta.yaml b/recipes/bioconductor-cellnoptr/meta.yaml index 10946dea52724..f65302c9f8c19 100644 --- a/recipes/bioconductor-cellnoptr/meta.yaml +++ b/recipes/bioconductor-cellnoptr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9b0dba0616690fed7ae50cc60e5def8a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -31,7 +31,6 @@ requirements: - r-stringi - r-stringr - r-xml - - graphviz >=2.2 run: - 'bioconductor-graph >=1.62.0,<1.63.0' - 'bioconductor-rbgl >=1.60.0,<1.61.0' @@ -44,7 +43,6 @@ requirements: - r-stringi - r-stringr - r-xml - - graphviz >=2.2 build: - {{ compiler('c') }} - make diff --git a/recipes/bioconductor-cellscape/meta.yaml b/recipes/bioconductor-cellscape/meta.yaml index f53d087c2b92c..995402ff9ad93 100644 --- a/recipes/bioconductor-cellscape/meta.yaml +++ b/recipes/bioconductor-cellscape/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a3879c530dadeea94b728acea78ef4cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cellscore/meta.yaml b/recipes/bioconductor-cellscore/meta.yaml index fbc67f5f7464d..05690e050b7ed 100644 --- a/recipes/bioconductor-cellscore/meta.yaml +++ b/recipes/bioconductor-cellscore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a574b7a8e836c7ab3c26c00a14810ac0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-celltrails/meta.yaml b/recipes/bioconductor-celltrails/meta.yaml index bc9df5bb5e8b0..64e5db9e6ed77 100644 --- a/recipes/bioconductor-celltrails/meta.yaml +++ b/recipes/bioconductor-celltrails/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e64c7c273fb506b9cc1931e4ec63558d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-celltree/meta.yaml b/recipes/bioconductor-celltree/meta.yaml index 052a363877d0a..128e0203e2815 100644 --- a/recipes/bioconductor-celltree/meta.yaml +++ b/recipes/bioconductor-celltree/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0d509562248089909780d86511d479f6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cemitool/meta.yaml b/recipes/bioconductor-cemitool/meta.yaml index d8240fd3738f3..45a823a9cb67d 100644 --- a/recipes/bioconductor-cemitool/meta.yaml +++ b/recipes/bioconductor-cemitool/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.3" %} {% set name = "CEMiTool" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 865a41a9b9aa8bce4c9c2db3ec55bd64 + md5: f14733b388f546a0f5c343003a5db8cc build: number: 0 rpaths: diff --git a/recipes/bioconductor-ceu1kg/meta.yaml b/recipes/bioconductor-ceu1kg/meta.yaml index 946c47efe384b..bd5e9b64d9c2e 100644 --- a/recipes/bioconductor-ceu1kg/meta.yaml +++ b/recipes/bioconductor-ceu1kg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c755c9ed3fded070eb1c8acb518e3d15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ceu1kg/post-link.sh b/recipes/bioconductor-ceu1kg/post-link.sh index e5ca29fd6f298..7d7d1c2f3c950 100644 --- a/recipes/bioconductor-ceu1kg/post-link.sh +++ b/recipes/bioconductor-ceu1kg/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ceu1kg_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ceu1kg_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ceu1kg/bioconductor-ceu1kg_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ceu1kg/bioconductor-ceu1kg_0.22.0_src_all.tar.gz" ) MD5="c755c9ed3fded070eb1c8acb518e3d15" diff --git a/recipes/bioconductor-ceu1kgv/meta.yaml b/recipes/bioconductor-ceu1kgv/meta.yaml index 0fbeae1fd422c..6cc45dcf6643b 100644 --- a/recipes/bioconductor-ceu1kgv/meta.yaml +++ b/recipes/bioconductor-ceu1kgv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 287b778e75815512fa403979131b628d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ceu1kgv/post-link.sh b/recipes/bioconductor-ceu1kgv/post-link.sh index 8b10ceecf731f..b47afb7384d44 100644 --- a/recipes/bioconductor-ceu1kgv/post-link.sh +++ b/recipes/bioconductor-ceu1kgv/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ceu1kgv_0.26.0.tar.gz" "https://bioarchive.galaxyproject.org/ceu1kgv_0.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ceu1kgv/bioconductor-ceu1kgv_0.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ceu1kgv/bioconductor-ceu1kgv_0.26.0_src_all.tar.gz" ) MD5="287b778e75815512fa403979131b628d" diff --git a/recipes/bioconductor-ceuhm3/meta.yaml b/recipes/bioconductor-ceuhm3/meta.yaml index e10af411e80a0..e0778235bfc6b 100644 --- a/recipes/bioconductor-ceuhm3/meta.yaml +++ b/recipes/bioconductor-ceuhm3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c3036effe82163927a9658279be42c81 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ceuhm3/post-link.sh b/recipes/bioconductor-ceuhm3/post-link.sh index d1c57583e50ca..27c350f8eeab8 100644 --- a/recipes/bioconductor-ceuhm3/post-link.sh +++ b/recipes/bioconductor-ceuhm3/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ceuhm3_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ceuhm3_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ceuhm3/bioconductor-ceuhm3_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ceuhm3/bioconductor-ceuhm3_0.22.0_src_all.tar.gz" ) MD5="c3036effe82163927a9658279be42c81" diff --git a/recipes/bioconductor-cexor/meta.yaml b/recipes/bioconductor-cexor/meta.yaml index 240fd526337b0..9c42f087b1cd1 100644 --- a/recipes/bioconductor-cexor/meta.yaml +++ b/recipes/bioconductor-cexor/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d511dfadd09f06ab9ab73f2de560b815 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cfassay/meta.yaml b/recipes/bioconductor-cfassay/meta.yaml index 69ad0c05e7f4e..9e8d5ebd2df6b 100644 --- a/recipes/bioconductor-cfassay/meta.yaml +++ b/recipes/bioconductor-cfassay/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c0704e737f2e2b56f14e679d98a7b092 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cgdv17/meta.yaml b/recipes/bioconductor-cgdv17/meta.yaml index 6c17db2571d8b..524c501fd757b 100644 --- a/recipes/bioconductor-cgdv17/meta.yaml +++ b/recipes/bioconductor-cgdv17/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f7d6c5564f18afe12623a4b6f184e787 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cgdv17/post-link.sh b/recipes/bioconductor-cgdv17/post-link.sh index d0d13be6e5359..8ab10b91542b3 100644 --- a/recipes/bioconductor-cgdv17/post-link.sh +++ b/recipes/bioconductor-cgdv17/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/cgdv17_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/cgdv17_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cgdv17/bioconductor-cgdv17_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cgdv17/bioconductor-cgdv17_0.22.0_src_all.tar.gz" ) MD5="f7d6c5564f18afe12623a4b6f184e787" diff --git a/recipes/bioconductor-cgen/meta.yaml b/recipes/bioconductor-cgen/meta.yaml index 2a79648eb3eb4..8157eae6427ac 100644 --- a/recipes/bioconductor-cgen/meta.yaml +++ b/recipes/bioconductor-cgen/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 767b43ecdbf0996bfd4cca6de398c669 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cghbase/meta.yaml b/recipes/bioconductor-cghbase/meta.yaml index 536903adfe7ed..24c3aeeacf922 100644 --- a/recipes/bioconductor-cghbase/meta.yaml +++ b/recipes/bioconductor-cghbase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6407dc3137d1d4cdbea47d20cb2a2a81 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cghcall/meta.yaml b/recipes/bioconductor-cghcall/meta.yaml index 5246d656d93ea..b46ccbf11f5db 100644 --- a/recipes/bioconductor-cghcall/meta.yaml +++ b/recipes/bioconductor-cghcall/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 892aae691ef9ebd057fa867b487e309e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cghmcr/meta.yaml b/recipes/bioconductor-cghmcr/meta.yaml index df6299994da22..1afef8488f066 100644 --- a/recipes/bioconductor-cghmcr/meta.yaml +++ b/recipes/bioconductor-cghmcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eaf9fbdce3b0f3a370e021769e05db83 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cghnormaliter/meta.yaml b/recipes/bioconductor-cghnormaliter/meta.yaml index a3e761b8fc4ca..828a000ac6e6c 100644 --- a/recipes/bioconductor-cghnormaliter/meta.yaml +++ b/recipes/bioconductor-cghnormaliter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ced0a49c575405ab70d0728b3b32a9f9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cghregions/meta.yaml b/recipes/bioconductor-cghregions/meta.yaml index 4986f6df4d728..f9ec88ad80463 100644 --- a/recipes/bioconductor-cghregions/meta.yaml +++ b/recipes/bioconductor-cghregions/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 78e9736273b569e7f6eba6f2024f2a40 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-champ/meta.yaml b/recipes/bioconductor-champ/meta.yaml index 2380007ba96ae..343c7bd5b39b6 100644 --- a/recipes/bioconductor-champ/meta.yaml +++ b/recipes/bioconductor-champ/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c9aee84f402874745f1c5289f6de38b3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -31,7 +31,7 @@ requirements: - 'bioconductor-illumina450probevariants.db >=1.20.0,<1.21.0' - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0' - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0' - - 'bioconductor-illuminahumanmethylationepicmanifest >=0.4.0,<0.5.0' + - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0' - 'bioconductor-illuminaio >=0.26.0,<0.27.0' - 'bioconductor-impute >=1.58.0,<1.59.0' - 'bioconductor-limma >=3.40.0,<3.41.0' @@ -71,7 +71,7 @@ requirements: - 'bioconductor-illumina450probevariants.db >=1.20.0,<1.21.0' - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0' - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0' - - 'bioconductor-illuminahumanmethylationepicmanifest >=0.4.0,<0.5.0' + - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0' - 'bioconductor-illuminaio >=0.26.0,<0.27.0' - 'bioconductor-impute >=1.58.0,<1.59.0' - 'bioconductor-limma >=3.40.0,<3.41.0' diff --git a/recipes/bioconductor-champdata/meta.yaml b/recipes/bioconductor-champdata/meta.yaml index ac9074e2fbd5f..ad494a690b444 100644 --- a/recipes/bioconductor-champdata/meta.yaml +++ b/recipes/bioconductor-champdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 41023a6402403275016b865f07eba6a5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-champdata/post-link.sh b/recipes/bioconductor-champdata/post-link.sh index da5b9befe8ece..8d845157de1f3 100644 --- a/recipes/bioconductor-champdata/post-link.sh +++ b/recipes/bioconductor-champdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ChAMPdata_2.16.0.tar.gz" "https://bioarchive.galaxyproject.org/ChAMPdata_2.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-champdata/bioconductor-champdata_2.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-champdata/bioconductor-champdata_2.16.0_src_all.tar.gz" ) MD5="41023a6402403275016b865f07eba6a5" diff --git a/recipes/bioconductor-charge/meta.yaml b/recipes/bioconductor-charge/meta.yaml index 70e20ffd4ff1f..545b5d437d6ac 100644 --- a/recipes/bioconductor-charge/meta.yaml +++ b/recipes/bioconductor-charge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 68a0b860a2dc6ecc2e64eb5496954d0b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-charm/meta.yaml b/recipes/bioconductor-charm/meta.yaml index d84724608767c..8436bc578aafa 100644 --- a/recipes/bioconductor-charm/meta.yaml +++ b/recipes/bioconductor-charm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f8013190e4d25c45eb4999a6a2c4a883 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-charmdata/meta.yaml b/recipes/bioconductor-charmdata/meta.yaml index de911355f9972..a69e971d9daff 100644 --- a/recipes/bioconductor-charmdata/meta.yaml +++ b/recipes/bioconductor-charmdata/meta.yaml @@ -12,19 +12,19 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b01273cf14a402015dc5a26f6b3780ef build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ noarch: generic requirements: host: - - 'bioconductor-charm >=2.30.0,<2.31.0' - - 'bioconductor-pd.charm.hg18.example >=1.0.0,<1.1.0' + - 'bioconductor-charm >=2.29.0,<2.30.0' + - 'bioconductor-pd.charm.hg18.example >=0.99.0,<0.100.0' - r-base run: - - 'bioconductor-charm >=2.30.0,<2.31.0' - - 'bioconductor-pd.charm.hg18.example >=1.0.0,<1.1.0' + - 'bioconductor-charm >=2.29.0,<2.30.0' + - 'bioconductor-pd.charm.hg18.example >=0.99.0,<0.100.0' - r-base - curl test: diff --git a/recipes/bioconductor-charmdata/post-link.sh b/recipes/bioconductor-charmdata/post-link.sh index 354bbe2382c12..61036c832f72a 100644 --- a/recipes/bioconductor-charmdata/post-link.sh +++ b/recipes/bioconductor-charmdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/charmData_1.19.0.tar.gz" "https://bioarchive.galaxyproject.org/charmData_1.19.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-charmdata/bioconductor-charmdata_1.19.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-charmdata/bioconductor-charmdata_1.19.0_src_all.tar.gz" ) MD5="b01273cf14a402015dc5a26f6b3780ef" diff --git a/recipes/bioconductor-chemminedrugs/meta.yaml b/recipes/bioconductor-chemminedrugs/meta.yaml index 97b4701923690..388fba50e2e59 100644 --- a/recipes/bioconductor-chemminedrugs/meta.yaml +++ b/recipes/bioconductor-chemminedrugs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2a3646e5173e93080fb5b49564f5d545 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chemmineob/meta.yaml b/recipes/bioconductor-chemmineob/meta.yaml index 3ae0968e94202..fb00e73e532d8 100644 --- a/recipes/bioconductor-chemmineob/meta.yaml +++ b/recipes/bioconductor-chemmineob/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7fe4e4182986ff317665bf0db03aab31 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -25,14 +25,12 @@ requirements: - r-base - r-bh - 'r-rcpp >=0.11.0' - - openbabel >=2.3.1 run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-zlibbioc >=1.30.0,<1.31.0' - r-base - r-bh - 'r-rcpp >=0.11.0' - - openbabel >=2.3.1 build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-chemminer/meta.yaml b/recipes/bioconductor-chemminer/meta.yaml index 99cba2b9fa594..67be405068cf6 100644 --- a/recipes/bioconductor-chemminer/meta.yaml +++ b/recipes/bioconductor-chemminer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8d49bddc3a3375ead2711b55cd405930 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chetah/meta.yaml b/recipes/bioconductor-chetah/meta.yaml index 13fb7d73ebf95..a5fa1a8665860 100644 --- a/recipes/bioconductor-chetah/meta.yaml +++ b/recipes/bioconductor-chetah/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.4" %} {% set name = "CHETAH" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: f249890b29eed4f6cf36b36700f1a39d + md5: 55fff2f505680303f2a471764586c40e build: number: 0 rpaths: @@ -55,5 +55,5 @@ test: about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'file LICENSE' - summary: 'CHETAH is a accurate, selective and fast scRNA-seq classifier. Classification is guided by a reference dataset, preferentially also a scRNA-seq dataset. By hierarchical clustering of the reference data, CHETAH creates a classification tree that enables a step-wise, top-to-bottom classification. Using a novel stopping rule, CHETAH classifies the input cells to the cell types of the references and to "intermediate types": more general classifications that ended in an intermediate node of the tree.' + summary: 'CHETAH (CHaracterization of cEll Types Aided by Hierarchical classification) is an accurate, selective and fast scRNA-seq classifier. Classification is guided by a reference dataset, preferentially also a scRNA-seq dataset. By hierarchical clustering of the reference data, CHETAH creates a classification tree that enables a step-wise, top-to-bottom classification. Using a novel stopping rule, CHETAH classifies the input cells to the cell types of the references and to "intermediate types": more general classifications that ended in an intermediate node of the tree.' diff --git a/recipes/bioconductor-chic.data/meta.yaml b/recipes/bioconductor-chic.data/meta.yaml index ef6af94f93abc..4562cd22fbb82 100644 --- a/recipes/bioconductor-chic.data/meta.yaml +++ b/recipes/bioconductor-chic.data/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 363188008f53ea5cab5ae873be14365a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chic.data/post-link.sh b/recipes/bioconductor-chic.data/post-link.sh index 6836990103440..8a860abbbb0c4 100644 --- a/recipes/bioconductor-chic.data/post-link.sh +++ b/recipes/bioconductor-chic.data/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ChIC.data_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/ChIC.data_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chic.data/bioconductor-chic.data_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chic.data/bioconductor-chic.data_1.4.0_src_all.tar.gz" ) MD5="363188008f53ea5cab5ae873be14365a" diff --git a/recipes/bioconductor-chic/meta.yaml b/recipes/bioconductor-chic/meta.yaml index e8d303ef1b788..d2ec36697e9fa 100644 --- a/recipes/bioconductor-chic/meta.yaml +++ b/recipes/bioconductor-chic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 36c70a76294c44a3740a1aca9aa5a9b5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chicago/meta.yaml b/recipes/bioconductor-chicago/meta.yaml index b1de726806884..5c4cae529497f 100644 --- a/recipes/bioconductor-chicago/meta.yaml +++ b/recipes/bioconductor-chicago/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d5ed2c8bd98b169b431f2aef87a65aa6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chicken.db/meta.yaml b/recipes/bioconductor-chicken.db/meta.yaml index 4b0d86814e428..c622db114d7ca 100644 --- a/recipes/bioconductor-chicken.db/meta.yaml +++ b/recipes/bioconductor-chicken.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e093b861c4688cf10e53a3124ee8bfc0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chicken.db0/meta.yaml b/recipes/bioconductor-chicken.db0/meta.yaml index 1f9badf85640d..c4b77a96477ba 100644 --- a/recipes/bioconductor-chicken.db0/meta.yaml +++ b/recipes/bioconductor-chicken.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a205de7be26047ac1d45287320d4efc6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chicken.db0/post-link.sh b/recipes/bioconductor-chicken.db0/post-link.sh index bf16884125ce1..4c82f026eaa82 100644 --- a/recipes/bioconductor-chicken.db0/post-link.sh +++ b/recipes/bioconductor-chicken.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/chicken.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/chicken.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chicken.db0/bioconductor-chicken.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chicken.db0/bioconductor-chicken.db0_3.8.2_src_all.tar.gz" ) MD5="a205de7be26047ac1d45287320d4efc6" diff --git a/recipes/bioconductor-chickencdf/meta.yaml b/recipes/bioconductor-chickencdf/meta.yaml index c3b7828d60e04..c7fb9d738e9b5 100644 --- a/recipes/bioconductor-chickencdf/meta.yaml +++ b/recipes/bioconductor-chickencdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ab0097b4b7b6c4d94360feb84ab69972 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chickenprobe/meta.yaml b/recipes/bioconductor-chickenprobe/meta.yaml index 3bc5ccea6fe1d..33111992b59a0 100644 --- a/recipes/bioconductor-chickenprobe/meta.yaml +++ b/recipes/bioconductor-chickenprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b33599081ce1ba768ff7992e143c01d0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chimera/meta.yaml b/recipes/bioconductor-chimera/meta.yaml index d6934b41a379c..84042e2de68c6 100644 --- a/recipes/bioconductor-chimera/meta.yaml +++ b/recipes/bioconductor-chimera/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1260ef67ee085f1a61374ae3a7deafed build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -25,28 +25,20 @@ requirements: - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0' - r-base - - star - - tophat - - bowtie2 - - samtools run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0' - r-base - - star - - tophat - - bowtie2 - - samtools build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-chimeraviz/meta.yaml b/recipes/bioconductor-chimeraviz/meta.yaml index 028b1d0c964a1..cd282f456233f 100644 --- a/recipes/bioconductor-chimeraviz/meta.yaml +++ b/recipes/bioconductor-chimeraviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1232b731506b98afc592ea7cc9bb3732 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -47,9 +47,6 @@ requirements: - r-rcircos - r-rcolorbrewer - r-rmarkdown - - bowtie2 - - samtools - - grep run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-annotationfilter >=1.8.0,<1.9.0' @@ -77,9 +74,6 @@ requirements: - r-rcircos - r-rcolorbrewer - r-rmarkdown - - bowtie2 - - samtools - - grep test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-chimp.db0/meta.yaml b/recipes/bioconductor-chimp.db0/meta.yaml index 6e81733b9e375..76b1358924bcb 100644 --- a/recipes/bioconductor-chimp.db0/meta.yaml +++ b/recipes/bioconductor-chimp.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7a3202440652fd2c5a4c95c5439e92a8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chimp.db0/post-link.sh b/recipes/bioconductor-chimp.db0/post-link.sh index 6af6c8efff57e..667f1f0747dbd 100644 --- a/recipes/bioconductor-chimp.db0/post-link.sh +++ b/recipes/bioconductor-chimp.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/chimp.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/chimp.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chimp.db0/bioconductor-chimp.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chimp.db0/bioconductor-chimp.db0_3.8.2_src_all.tar.gz" ) MD5="7a3202440652fd2c5a4c95c5439e92a8" diff --git a/recipes/bioconductor-chimphumanbraindata/meta.yaml b/recipes/bioconductor-chimphumanbraindata/meta.yaml index fc2f26e0d9387..180a30fdfd8bb 100644 --- a/recipes/bioconductor-chimphumanbraindata/meta.yaml +++ b/recipes/bioconductor-chimphumanbraindata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d7a381464a431897c78431f93a64998d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chimphumanbraindata/post-link.sh b/recipes/bioconductor-chimphumanbraindata/post-link.sh index b60711fbb1a63..7cb0cde942b9f 100644 --- a/recipes/bioconductor-chimphumanbraindata/post-link.sh +++ b/recipes/bioconductor-chimphumanbraindata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ChimpHumanBrainData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ChimpHumanBrainData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chimphumanbraindata/bioconductor-chimphumanbraindata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chimphumanbraindata/bioconductor-chimphumanbraindata_1.22.0_src_all.tar.gz" ) MD5="d7a381464a431897c78431f93a64998d" diff --git a/recipes/bioconductor-chipanalyser/meta.yaml b/recipes/bioconductor-chipanalyser/meta.yaml index 1afcc39444780..3bb14b3d071ca 100644 --- a/recipes/bioconductor-chipanalyser/meta.yaml +++ b/recipes/bioconductor-chipanalyser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9bd347492da8d4964d74601513538ea7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipcomp/meta.yaml b/recipes/bioconductor-chipcomp/meta.yaml index 86de48b677e5c..ef500fbe8f684 100644 --- a/recipes/bioconductor-chipcomp/meta.yaml +++ b/recipes/bioconductor-chipcomp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7cefdbab363e65223863f0845cb2c840 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipenrich.data/meta.yaml b/recipes/bioconductor-chipenrich.data/meta.yaml index f5dbcc0585182..f63bf4c09c8b9 100644 --- a/recipes/bioconductor-chipenrich.data/meta.yaml +++ b/recipes/bioconductor-chipenrich.data/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 26d744a980e0698a991565fb0beea5a1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipenrich.data/post-link.sh b/recipes/bioconductor-chipenrich.data/post-link.sh index 51e035fda0d39..f9997c1f41bf1 100644 --- a/recipes/bioconductor-chipenrich.data/post-link.sh +++ b/recipes/bioconductor-chipenrich.data/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/chipenrich.data_2.8.0.tar.gz" "https://bioarchive.galaxyproject.org/chipenrich.data_2.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chipenrich.data/bioconductor-chipenrich.data_2.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chipenrich.data/bioconductor-chipenrich.data_2.8.0_src_all.tar.gz" ) MD5="26d744a980e0698a991565fb0beea5a1" diff --git a/recipes/bioconductor-chipenrich/meta.yaml b/recipes/bioconductor-chipenrich/meta.yaml index df6124b8a6288..fa067c92c673d 100644 --- a/recipes/bioconductor-chipenrich/meta.yaml +++ b/recipes/bioconductor-chipenrich/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 70a5e2c7704314c3f01ab8571cc47769 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipexoqual/meta.yaml b/recipes/bioconductor-chipexoqual/meta.yaml index 4dbb7ee84e0ec..b74e095a8df2d 100644 --- a/recipes/bioconductor-chipexoqual/meta.yaml +++ b/recipes/bioconductor-chipexoqual/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9f41cb7adca04bb0dea5fd142061d18d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipexoqualexample/meta.yaml b/recipes/bioconductor-chipexoqualexample/meta.yaml index a4401dcfcad76..0471389afbdfa 100644 --- a/recipes/bioconductor-chipexoqualexample/meta.yaml +++ b/recipes/bioconductor-chipexoqualexample/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 991058493c34afddf1ea08c093d52206 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipexoqualexample/post-link.sh b/recipes/bioconductor-chipexoqualexample/post-link.sh index bd9babbd87acb..75214d5df6913 100644 --- a/recipes/bioconductor-chipexoqualexample/post-link.sh +++ b/recipes/bioconductor-chipexoqualexample/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ChIPexoQualExample_1.8.0.tar.gz" "https://bioarchive.galaxyproject.org/ChIPexoQualExample_1.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chipexoqualexample/bioconductor-chipexoqualexample_1.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chipexoqualexample/bioconductor-chipexoqualexample_1.8.0_src_all.tar.gz" ) MD5="991058493c34afddf1ea08c093d52206" diff --git a/recipes/bioconductor-chippeakanno/meta.yaml b/recipes/bioconductor-chippeakanno/meta.yaml index d06afa968eb65..8f0aab21d7086 100644 --- a/recipes/bioconductor-chippeakanno/meta.yaml +++ b/recipes/bioconductor-chippeakanno/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "3.18.0" %} +{% set version = "3.18.2" %} {% set name = "ChIPpeakAnno" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: ce563c6fe91bb8422e9cfecdc831238b + md5: 463590183bc2d2eb623ea12549b292d2 build: number: 0 rpaths: diff --git a/recipes/bioconductor-chipqc/meta.yaml b/recipes/bioconductor-chipqc/meta.yaml index aa54ad4126c26..77996bb2e3275 100644 --- a/recipes/bioconductor-chipqc/meta.yaml +++ b/recipes/bioconductor-chipqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1eeef062ff28b32273a925872e9b4de0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipseeker/meta.yaml b/recipes/bioconductor-chipseeker/meta.yaml index 1240a5742c2df..a3b5a18e3d711 100644 --- a/recipes/bioconductor-chipseeker/meta.yaml +++ b/recipes/bioconductor-chipseeker/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bb0609bdaf4de9d9423bfd758bad1e12 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipseq/meta.yaml b/recipes/bioconductor-chipseq/meta.yaml index 667a63b76e8bd..b15dac20804a5 100644 --- a/recipes/bioconductor-chipseq/meta.yaml +++ b/recipes/bioconductor-chipseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0789cf5bd49a71364a763517cb219aea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipseqdbdata/meta.yaml b/recipes/bioconductor-chipseqdbdata/meta.yaml index 2db079015db39..3f53181fffd07 100644 --- a/recipes/bioconductor-chipseqdbdata/meta.yaml +++ b/recipes/bioconductor-chipseqdbdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89f8ca03e19a3107510d93bb3a082625 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipseqdbdata/post-link.sh b/recipes/bioconductor-chipseqdbdata/post-link.sh index 4d6acb42e303f..2396d8211a19d 100644 --- a/recipes/bioconductor-chipseqdbdata/post-link.sh +++ b/recipes/bioconductor-chipseqdbdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/chipseqDBData_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/chipseqDBData_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chipseqdbdata/bioconductor-chipseqdbdata_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chipseqdbdata/bioconductor-chipseqdbdata_1.0.0_src_all.tar.gz" ) MD5="89f8ca03e19a3107510d93bb3a082625" diff --git a/recipes/bioconductor-chipseqr/meta.yaml b/recipes/bioconductor-chipseqr/meta.yaml index 00476971d6d2c..1e6545c6e702a 100644 --- a/recipes/bioconductor-chipseqr/meta.yaml +++ b/recipes/bioconductor-chipseqr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b1ce207d55454fdc59df12255e6d3f0f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipseqspike/meta.yaml b/recipes/bioconductor-chipseqspike/meta.yaml index 40651c3137ca6..dd0aebca1fcc2 100644 --- a/recipes/bioconductor-chipseqspike/meta.yaml +++ b/recipes/bioconductor-chipseqspike/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f36d97df712bd1d40d5ccddda86dcc05 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipsim/meta.yaml b/recipes/bioconductor-chipsim/meta.yaml index d77fb1a41fcd3..3a80132c94a35 100644 --- a/recipes/bioconductor-chipsim/meta.yaml +++ b/recipes/bioconductor-chipsim/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 21a19dd3b1a20aa6feabae9db8193bd3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipxpress/meta.yaml b/recipes/bioconductor-chipxpress/meta.yaml index 516f06807dfca..462c6e90ef1ba 100644 --- a/recipes/bioconductor-chipxpress/meta.yaml +++ b/recipes/bioconductor-chipxpress/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9680fbb73971f9b76b2099d0b0ca8161 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipxpressdata/meta.yaml b/recipes/bioconductor-chipxpressdata/meta.yaml index 6e01150aa6bbe..aad619468da92 100644 --- a/recipes/bioconductor-chipxpressdata/meta.yaml +++ b/recipes/bioconductor-chipxpressdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4dc8f6accadaa504672e7f40d144460a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chipxpressdata/post-link.sh b/recipes/bioconductor-chipxpressdata/post-link.sh index 570324777bc1d..1bfaf282b14e9 100644 --- a/recipes/bioconductor-chipxpressdata/post-link.sh +++ b/recipes/bioconductor-chipxpressdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ChIPXpressData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ChIPXpressData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chipxpressdata/bioconductor-chipxpressdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chipxpressdata/bioconductor-chipxpressdata_1.22.0_src_all.tar.gz" ) MD5="4dc8f6accadaa504672e7f40d144460a" diff --git a/recipes/bioconductor-chopsticks/meta.yaml b/recipes/bioconductor-chopsticks/meta.yaml index 34b97afcd54c3..6f1dafc22a050 100644 --- a/recipes/bioconductor-chopsticks/meta.yaml +++ b/recipes/bioconductor-chopsticks/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6971614767463f422261c871144d0de4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chrogps/meta.yaml b/recipes/bioconductor-chrogps/meta.yaml index d02882ecfd6f4..b69e0b829bff8 100644 --- a/recipes/bioconductor-chrogps/meta.yaml +++ b/recipes/bioconductor-chrogps/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1c20015597fc1f3d3e4f99320344c4bf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chromdraw/meta.yaml b/recipes/bioconductor-chromdraw/meta.yaml index c1b01692f9fd1..6f186be00d1fd 100644 --- a/recipes/bioconductor-chromdraw/meta.yaml +++ b/recipes/bioconductor-chromdraw/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e577a789a88f7d82e8e6fc7a9388cbb5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chromheatmap/meta.yaml b/recipes/bioconductor-chromheatmap/meta.yaml index b4a52d6b57dc0..58384ea27c2be 100644 --- a/recipes/bioconductor-chromheatmap/meta.yaml +++ b/recipes/bioconductor-chromheatmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 86424fcf2665a84797efb9977b73449f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chromplot/meta.yaml b/recipes/bioconductor-chromplot/meta.yaml index 5d09846614c89..82e9b610c865f 100644 --- a/recipes/bioconductor-chromplot/meta.yaml +++ b/recipes/bioconductor-chromplot/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a83b3a023294deec5184eb5f7af01ec1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chromstar/meta.yaml b/recipes/bioconductor-chromstar/meta.yaml index e88454b8db5ff..389ff609c18dc 100644 --- a/recipes/bioconductor-chromstar/meta.yaml +++ b/recipes/bioconductor-chromstar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 021eb8e6f24bb476a42ceefcaf19b883 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chromstardata/meta.yaml b/recipes/bioconductor-chromstardata/meta.yaml index df043114650bc..13387925d589a 100644 --- a/recipes/bioconductor-chromstardata/meta.yaml +++ b/recipes/bioconductor-chromstardata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 10d6c6236f90681d268ddb75e36f8549 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chromstardata/post-link.sh b/recipes/bioconductor-chromstardata/post-link.sh index 1b598c295859d..481d724e4bd06 100644 --- a/recipes/bioconductor-chromstardata/post-link.sh +++ b/recipes/bioconductor-chromstardata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/chromstaRData_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/chromstaRData_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-chromstardata/bioconductor-chromstardata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-chromstardata/bioconductor-chromstardata_1.10.0_src_all.tar.gz" ) MD5="10d6c6236f90681d268ddb75e36f8549" diff --git a/recipes/bioconductor-chromswitch/meta.yaml b/recipes/bioconductor-chromswitch/meta.yaml index a2ef5604fb087..e6923d68cd124 100644 --- a/recipes/bioconductor-chromswitch/meta.yaml +++ b/recipes/bioconductor-chromswitch/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a4818e3957bc869fe4f87d9c38066fc3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chromvar/meta.yaml b/recipes/bioconductor-chromvar/meta.yaml index eddcef5e5ef90..d6400cb842fdc 100644 --- a/recipes/bioconductor-chromvar/meta.yaml +++ b/recipes/bioconductor-chromvar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 00a21c0ce9d872f74f6a5206daaaaaa4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-chronos/meta.yaml b/recipes/bioconductor-chronos/meta.yaml index 110cb71d9ce67..cd30ca786d98b 100644 --- a/recipes/bioconductor-chronos/meta.yaml +++ b/recipes/bioconductor-chronos/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 23549499ee1be61c2fe468de10d353b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -32,8 +32,6 @@ requirements: - r-openxlsx - r-rcurl - r-xml - - openjdk 8.* - - pandoc run: - 'bioconductor-biomart >=2.40.0,<2.41.0' - 'bioconductor-graph >=1.62.0,<1.63.0' @@ -46,9 +44,6 @@ requirements: - r-openxlsx - r-rcurl - r-xml - - openjdk 8.* - - pandoc - test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-cicero/meta.yaml b/recipes/bioconductor-cicero/meta.yaml index baf63a352d182..151e6730a6375 100644 --- a/recipes/bioconductor-cicero/meta.yaml +++ b/recipes/bioconductor-cicero/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 20ceee0cf038811ec4b611da2d8248c7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cindex/meta.yaml b/recipes/bioconductor-cindex/meta.yaml index 012b591395bfc..c27bc6ef7f606 100644 --- a/recipes/bioconductor-cindex/meta.yaml +++ b/recipes/bioconductor-cindex/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5194827a892d59246818e56c5c65cf59 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cispath/meta.yaml b/recipes/bioconductor-cispath/meta.yaml index 38195bffe4ac0..01cb5346afccc 100644 --- a/recipes/bioconductor-cispath/meta.yaml +++ b/recipes/bioconductor-cispath/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bf2dfa76883e6262aabd0a67e7e3e6be build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-citruscdf/meta.yaml b/recipes/bioconductor-citruscdf/meta.yaml index 311282c261089..c72edc3d5767f 100644 --- a/recipes/bioconductor-citruscdf/meta.yaml +++ b/recipes/bioconductor-citruscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4af821a0c1ae1adf42b7dc5ce7458593 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-citrusprobe/meta.yaml b/recipes/bioconductor-citrusprobe/meta.yaml index 77190f4700e93..6552cb33d39ec 100644 --- a/recipes/bioconductor-citrusprobe/meta.yaml +++ b/recipes/bioconductor-citrusprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 259b114f96d5307c447d000bd27a7d15 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clariomdhumanprobeset.db/meta.yaml b/recipes/bioconductor-clariomdhumanprobeset.db/meta.yaml index 29f989548cc94..e93e61ac6bd15 100644 --- a/recipes/bioconductor-clariomdhumanprobeset.db/meta.yaml +++ b/recipes/bioconductor-clariomdhumanprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3f390b06a44187e10e4e8a60af16375b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clariomdhumantranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomdhumantranscriptcluster.db/meta.yaml index eae3e5441e151..b6cc91fe05323 100644 --- a/recipes/bioconductor-clariomdhumantranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-clariomdhumantranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a460203ad96a4ada92b495ac0811cbe3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clariomshumanhttranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomshumanhttranscriptcluster.db/meta.yaml index fd95a20b93f88..3c0c33af75722 100644 --- a/recipes/bioconductor-clariomshumanhttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-clariomshumanhttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fce4e730f50b068d8f91319754f8024f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clariomshumantranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomshumantranscriptcluster.db/meta.yaml index c0fb2975fd066..ae6a89abd8768 100644 --- a/recipes/bioconductor-clariomshumantranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-clariomshumantranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0b92969a4bb4a2d8e972602f68c7ad1b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clariomsmousehttranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomsmousehttranscriptcluster.db/meta.yaml index 464c1cd5fdf35..32ee6faa3c481 100644 --- a/recipes/bioconductor-clariomsmousehttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-clariomsmousehttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ba6fdb1816669b4ffb2707a0fe89ef59 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clariomsmousetranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomsmousetranscriptcluster.db/meta.yaml index c5633a9c6a794..39a45e6a0ec74 100644 --- a/recipes/bioconductor-clariomsmousetranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-clariomsmousetranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a70687be504281a4ec08c0535da4121f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clariomsrathttranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomsrathttranscriptcluster.db/meta.yaml index 7ce438ddb45cf..676163c191877 100644 --- a/recipes/bioconductor-clariomsrathttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-clariomsrathttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 50399fde7380b015da941f36362a3f78 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clariomsrattranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomsrattranscriptcluster.db/meta.yaml index 2e1ed5d5a6fb1..8206372655136 100644 --- a/recipes/bioconductor-clariomsrattranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-clariomsrattranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 34d0c761a038f5f28f6b5db4b7e575a7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-classifyr/meta.yaml b/recipes/bioconductor-classifyr/meta.yaml index 62a27ab79ba03..41c08bbb91bfd 100644 --- a/recipes/bioconductor-classifyr/meta.yaml +++ b/recipes/bioconductor-classifyr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.4.0" %} +{% set version = "2.4.4" %} {% set name = "ClassifyR" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 156be11086908fd5f050915742c96f7b + md5: 8a6e77df41678daff4030b332c3f9d1a build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: limma, genefilter, edgeR, car, Rmixmod, ggplot2 (>= 3.0.0), gridExtra (>= 2.0.0), cowplot, BiocStyle, pamr, PoiClaClu, parathyroidSE, knitr, htmltools, gtable, scales, e1071, rmarkdown, IRanges, randomForest, robustbase, glmnet, class +# Suggests: limma, genefilter, edgeR, car, Rmixmod, ggplot2, gridExtra, cowplot, BiocStyle, pamr, PoiClaClu, parathyroidSE, knitr, htmltools, gtable, scales, e1071, rmarkdown, IRanges, randomForest, robustbase, glmnet, class requirements: host: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' diff --git a/recipes/bioconductor-cleanupdtseq/meta.yaml b/recipes/bioconductor-cleanupdtseq/meta.yaml index 6b20f0c5e3d3c..1a5ae139cc01d 100644 --- a/recipes/bioconductor-cleanupdtseq/meta.yaml +++ b/recipes/bioconductor-cleanupdtseq/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.22.0" %} +{% set version = "1.22.2" %} {% set name = "cleanUpdTSeq" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: de3acfeb36d648850cfbac428cfc1418 + md5: c33ff7362ec09fc2417d50a09df2e0e0 build: number: 0 rpaths: @@ -45,7 +45,7 @@ test: about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-2 - summary: 'This package uses the Naive Bayes classifier (from e1071) to assign probability values to putative polyadenylation sites (pA sites) based on training data from zebrafish. This will allow the user to separate true, biologically relevant pA sites from false, oligodT primed pA sites.' + summary: 'This package implements a Naive Bayes classifier for accurate identification of polyadenylation sites (pA sites) from oligodT based 3 prime end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq. The classifer is highly accurate and outperforms heuristic methods.' extra: identifiers: - biotools:cleanupdtseq diff --git a/recipes/bioconductor-cleaver/meta.yaml b/recipes/bioconductor-cleaver/meta.yaml index 3b4ad3d333a57..258d42c3c1f64 100644 --- a/recipes/bioconductor-cleaver/meta.yaml +++ b/recipes/bioconductor-cleaver/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9759e3cc9a1c9f2be7e029ceb462b4a3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clippda/build.sh b/recipes/bioconductor-clippda/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-clippda/build.sh +++ b/recipes/bioconductor-clippda/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-clippda/meta.yaml b/recipes/bioconductor-clippda/meta.yaml index 5c45cf07bdfa5..6cfe7ec8e1949 100644 --- a/recipes/bioconductor-clippda/meta.yaml +++ b/recipes/bioconductor-clippda/meta.yaml @@ -12,12 +12,19 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9555259a3e4435bdbdd750f255b16918 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-limma >=3.40.0,<3.41.0' @@ -36,7 +43,7 @@ requirements: - r-statmod test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>=2)' diff --git a/recipes/bioconductor-clipper/meta.yaml b/recipes/bioconductor-clipper/meta.yaml index 22cbfad7f979c..09edf18c5c5b4 100644 --- a/recipes/bioconductor-clipper/meta.yaml +++ b/recipes/bioconductor-clipper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5ffbf94bc0991428351e2c32de0cec5c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cll/meta.yaml b/recipes/bioconductor-cll/meta.yaml index 9ce579a774870..0c124cdad3072 100644 --- a/recipes/bioconductor-cll/meta.yaml +++ b/recipes/bioconductor-cll/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c7e9da38377b6a30c1a4969b4175a543 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cll/post-link.sh b/recipes/bioconductor-cll/post-link.sh index cc593fc4e71c3..f0c267d834118 100644 --- a/recipes/bioconductor-cll/post-link.sh +++ b/recipes/bioconductor-cll/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CLL_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/CLL_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cll/bioconductor-cll_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cll/bioconductor-cll_1.24.0_src_all.tar.gz" ) MD5="c7e9da38377b6a30c1a4969b4175a543" diff --git a/recipes/bioconductor-cllmethylation/meta.yaml b/recipes/bioconductor-cllmethylation/meta.yaml index 47462f3d25e52..2ec80d84d16f8 100644 --- a/recipes/bioconductor-cllmethylation/meta.yaml +++ b/recipes/bioconductor-cllmethylation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2b2496c6f9a26e10a55c87b5a1087859 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cllmethylation/post-link.sh b/recipes/bioconductor-cllmethylation/post-link.sh index b59432230a53c..a92fad31f6e30 100644 --- a/recipes/bioconductor-cllmethylation/post-link.sh +++ b/recipes/bioconductor-cllmethylation/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CLLmethylation_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/CLLmethylation_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cllmethylation/bioconductor-cllmethylation_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cllmethylation/bioconductor-cllmethylation_1.4.0_src_all.tar.gz" ) MD5="2b2496c6f9a26e10a55c87b5a1087859" diff --git a/recipes/bioconductor-clomial/meta.yaml b/recipes/bioconductor-clomial/meta.yaml index 228cf8efe8383..c7eaa7eb4587a 100644 --- a/recipes/bioconductor-clomial/meta.yaml +++ b/recipes/bioconductor-clomial/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 483932cc2911c5055e2972fbeb3005b2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clonality/meta.yaml b/recipes/bioconductor-clonality/meta.yaml index ca476cdc2ee7e..b4445684d014c 100644 --- a/recipes/bioconductor-clonality/meta.yaml +++ b/recipes/bioconductor-clonality/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 16951e83e9b7565b99dca3cb450eebf9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clonotyper/meta.yaml b/recipes/bioconductor-clonotyper/meta.yaml index da47ad639020b..663c1147065cc 100644 --- a/recipes/bioconductor-clonotyper/meta.yaml +++ b/recipes/bioconductor-clonotyper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d123ef6f87bc8411f75011922537ad38 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clst/meta.yaml b/recipes/bioconductor-clst/meta.yaml index 549b64c06f39e..8abd219287bc7 100644 --- a/recipes/bioconductor-clst/meta.yaml +++ b/recipes/bioconductor-clst/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a9b3a5b2342ff43e0946b8c17c81816c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clstutils/meta.yaml b/recipes/bioconductor-clstutils/meta.yaml index 0bd2bce49d622..c84f92876add4 100644 --- a/recipes/bioconductor-clstutils/meta.yaml +++ b/recipes/bioconductor-clstutils/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f31a1566acdc40319644a1c7ec1969ab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clumsid/meta.yaml b/recipes/bioconductor-clumsid/meta.yaml index 28c55b7b40e1c..8f90e3efaf3ab 100644 --- a/recipes/bioconductor-clumsid/meta.yaml +++ b/recipes/bioconductor-clumsid/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 48db07b1d9a97a89ad03a97253e8e24a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clumsiddata/meta.yaml b/recipes/bioconductor-clumsiddata/meta.yaml index 22a399acf1905..ae58e6d0f6cab 100644 --- a/recipes/bioconductor-clumsiddata/meta.yaml +++ b/recipes/bioconductor-clumsiddata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a9ba9176bf862de81836a3b74f60af5e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clumsiddata/post-link.sh b/recipes/bioconductor-clumsiddata/post-link.sh index 97af019b93ecf..c64293be373c4 100644 --- a/recipes/bioconductor-clumsiddata/post-link.sh +++ b/recipes/bioconductor-clumsiddata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CluMSIDdata_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/CluMSIDdata_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-clumsiddata/bioconductor-clumsiddata_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-clumsiddata/bioconductor-clumsiddata_1.0.0_src_all.tar.gz" ) MD5="a9ba9176bf862de81836a3b74f60af5e" diff --git a/recipes/bioconductor-clustcomp/meta.yaml b/recipes/bioconductor-clustcomp/meta.yaml index ecff4088d40c8..b3c013f69e154 100644 --- a/recipes/bioconductor-clustcomp/meta.yaml +++ b/recipes/bioconductor-clustcomp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5d6c72bdfdab1828b794fe80e5b2bf4e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clusterexperiment/meta.yaml b/recipes/bioconductor-clusterexperiment/meta.yaml index 3c17cefb3ada1..15806f89bd4c2 100644 --- a/recipes/bioconductor-clusterexperiment/meta.yaml +++ b/recipes/bioconductor-clusterexperiment/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.4.0" %} +{% set version = "2.4.4" %} {% set name = "clusterExperiment" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: bf9ef5b681063b83d8452cdb0f9a95f9 + md5: b9ca4e2ca15f286e586d636f3fb55ba2 build: number: 0 rpaths: @@ -38,6 +38,7 @@ requirements: - r-matrixstats - r-nmf - r-phylobase + - r-pracma - r-rcolorbrewer - r-rcpp - r-rspectra @@ -63,6 +64,7 @@ requirements: - r-matrixstats - r-nmf - r-phylobase + - r-pracma - r-rcolorbrewer - r-rcpp - r-rspectra diff --git a/recipes/bioconductor-clusterjudge/meta.yaml b/recipes/bioconductor-clusterjudge/meta.yaml index 12cc77b6cae63..8fe70085e7b5c 100644 --- a/recipes/bioconductor-clusterjudge/meta.yaml +++ b/recipes/bioconductor-clusterjudge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8355965d9a38957058a66a8a28535160 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clusterprofiler/meta.yaml b/recipes/bioconductor-clusterprofiler/meta.yaml index 595c2cee17e7e..2252c82ae9e2e 100644 --- a/recipes/bioconductor-clusterprofiler/meta.yaml +++ b/recipes/bioconductor-clusterprofiler/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a8c02c3af86ebc0916bae80c64419b18 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clusterseq/meta.yaml b/recipes/bioconductor-clusterseq/meta.yaml index 899fa83064981..c5d2524e84dff 100644 --- a/recipes/bioconductor-clusterseq/meta.yaml +++ b/recipes/bioconductor-clusterseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f82bb977baa0ce56344f8732a4fbdca0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clustersignificance/meta.yaml b/recipes/bioconductor-clustersignificance/meta.yaml index 7bbf9cc388dcd..d6e255dfd01b1 100644 --- a/recipes/bioconductor-clustersignificance/meta.yaml +++ b/recipes/bioconductor-clustersignificance/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b97eb45eafae8a055983244ffd40d33a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-clusterstab/meta.yaml b/recipes/bioconductor-clusterstab/meta.yaml index c0c0f9e60d8d1..02f7d6e7e0d0d 100644 --- a/recipes/bioconductor-clusterstab/meta.yaml +++ b/recipes/bioconductor-clusterstab/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d55549ed704e0e7d13c80c9d6a13b1b2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cma/meta.yaml b/recipes/bioconductor-cma/meta.yaml index d66933073e589..e93bf5b033c7c 100644 --- a/recipes/bioconductor-cma/meta.yaml +++ b/recipes/bioconductor-cma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a1fd257a7b975dd6c6c31b60dd072e36 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cmap/meta.yaml b/recipes/bioconductor-cmap/meta.yaml index 75bef602469c7..9f0368954ad79 100644 --- a/recipes/bioconductor-cmap/meta.yaml +++ b/recipes/bioconductor-cmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dbf8df4d4540151936884e1c5d747bcf build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cmap2data/meta.yaml b/recipes/bioconductor-cmap2data/meta.yaml index 953cb77d62e38..510c2f4a90813 100644 --- a/recipes/bioconductor-cmap2data/meta.yaml +++ b/recipes/bioconductor-cmap2data/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5a816640a2b0fbe93e9398b460320ed7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cmap2data/post-link.sh b/recipes/bioconductor-cmap2data/post-link.sh index ae10a79392a58..64b6c8badc19f 100644 --- a/recipes/bioconductor-cmap2data/post-link.sh +++ b/recipes/bioconductor-cmap2data/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/cMap2data_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/cMap2data_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cmap2data/bioconductor-cmap2data_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cmap2data/bioconductor-cmap2data_1.20.0_src_all.tar.gz" ) MD5="5a816640a2b0fbe93e9398b460320ed7" diff --git a/recipes/bioconductor-cn.farms/meta.yaml b/recipes/bioconductor-cn.farms/meta.yaml index 5be8689d1a56a..ac2ad51829542 100644 --- a/recipes/bioconductor-cn.farms/meta.yaml +++ b/recipes/bioconductor-cn.farms/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fb0b30634c95a67c17e7b8f652c0b1a3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cn.mops/meta.yaml b/recipes/bioconductor-cn.mops/meta.yaml index 35a6fc18590c3..0fdd4b2332f75 100644 --- a/recipes/bioconductor-cn.mops/meta.yaml +++ b/recipes/bioconductor-cn.mops/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 503588f63a7ee549f7bb6f001b147cb5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnanorm/meta.yaml b/recipes/bioconductor-cnanorm/meta.yaml index 7e12450eb7da4..399d811a8f511 100644 --- a/recipes/bioconductor-cnanorm/meta.yaml +++ b/recipes/bioconductor-cnanorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 30e28ca6bb87d15fa7c5a6f464f4f55e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cner/meta.yaml b/recipes/bioconductor-cner/meta.yaml index 3ac370de135bd..71c2bcd756e77 100644 --- a/recipes/bioconductor-cner/meta.yaml +++ b/recipes/bioconductor-cner/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cf1a825dd6ed04ab61022de008fd5535 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnordt/meta.yaml b/recipes/bioconductor-cnordt/meta.yaml index 74ba69606ad7c..019cbf020fbce 100644 --- a/recipes/bioconductor-cnordt/meta.yaml +++ b/recipes/bioconductor-cnordt/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4de4604fc7299bfdab6568b3bc769da1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnorfeeder/meta.yaml b/recipes/bioconductor-cnorfeeder/meta.yaml index 5a2932a5a4249..f07989849a3a8 100644 --- a/recipes/bioconductor-cnorfeeder/meta.yaml +++ b/recipes/bioconductor-cnorfeeder/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2d7828bfb2c79b93ed53013e0d0f1fff build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnorfuzzy/meta.yaml b/recipes/bioconductor-cnorfuzzy/meta.yaml index 2c43ef0bbc3d3..ea19d38d1b2a1 100644 --- a/recipes/bioconductor-cnorfuzzy/meta.yaml +++ b/recipes/bioconductor-cnorfuzzy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e309f6b2e672b473f696368fd2a62595 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnorode/meta.yaml b/recipes/bioconductor-cnorode/meta.yaml index 5d2c06d4e502a..b37b9fdead1f9 100644 --- a/recipes/bioconductor-cnorode/meta.yaml +++ b/recipes/bioconductor-cnorode/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 800cc2ee0114d43e824ce48573f517d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnpbayes/meta.yaml b/recipes/bioconductor-cnpbayes/meta.yaml index 71d66af58ffe8..d9dbf35bb6d9c 100644 --- a/recipes/bioconductor-cnpbayes/meta.yaml +++ b/recipes/bioconductor-cnpbayes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8e50d11d4d4152779c2f999901665d93 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cntools/meta.yaml b/recipes/bioconductor-cntools/meta.yaml index b1bbba03582ec..0b75c5f730f81 100644 --- a/recipes/bioconductor-cntools/meta.yaml +++ b/recipes/bioconductor-cntools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d3fab8b1e26b17398d947fb7785b06f5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnvgsa/meta.yaml b/recipes/bioconductor-cnvgsa/meta.yaml index 84bf45e091ce4..22339f731c40b 100644 --- a/recipes/bioconductor-cnvgsa/meta.yaml +++ b/recipes/bioconductor-cnvgsa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c0795147bf7c9c04734e76a4a9d5ad28 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnvgsadata/meta.yaml b/recipes/bioconductor-cnvgsadata/meta.yaml index be0de5cf78f06..55c0f5e712ddd 100644 --- a/recipes/bioconductor-cnvgsadata/meta.yaml +++ b/recipes/bioconductor-cnvgsadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 084bb4dde34828a90051aec087948cf1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnvgsadata/post-link.sh b/recipes/bioconductor-cnvgsadata/post-link.sh index 231ea4395dcb6..4b6b58a6b57fa 100644 --- a/recipes/bioconductor-cnvgsadata/post-link.sh +++ b/recipes/bioconductor-cnvgsadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/cnvGSAdata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/cnvGSAdata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cnvgsadata/bioconductor-cnvgsadata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cnvgsadata/bioconductor-cnvgsadata_1.20.0_src_all.tar.gz" ) MD5="084bb4dde34828a90051aec087948cf1" diff --git a/recipes/bioconductor-cnvpanelizer/meta.yaml b/recipes/bioconductor-cnvpanelizer/meta.yaml index 80d69b39a8059..4b4150aff2b0c 100644 --- a/recipes/bioconductor-cnvpanelizer/meta.yaml +++ b/recipes/bioconductor-cnvpanelizer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cb6a6ddd87aff3639c36971aa6260251 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnvranger/meta.yaml b/recipes/bioconductor-cnvranger/meta.yaml index ac00b7bb839dd..dcf5303d44f0a 100644 --- a/recipes/bioconductor-cnvranger/meta.yaml +++ b/recipes/bioconductor-cnvranger/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 31c5cdcaaebf77a8fc1407058886db5d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnvrd2/meta.yaml b/recipes/bioconductor-cnvrd2/meta.yaml index f15d69a35acbb..dad1d31aa0772 100644 --- a/recipes/bioconductor-cnvrd2/meta.yaml +++ b/recipes/bioconductor-cnvrd2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4794f092465ee552756f69506e6a0b93 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cnvtools/meta.yaml b/recipes/bioconductor-cnvtools/meta.yaml index 308a97bba6d09..ca04f9ea2fd42 100644 --- a/recipes/bioconductor-cnvtools/meta.yaml +++ b/recipes/bioconductor-cnvtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f9844ca1cd5bb736dc47736f3848b3e4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cobindr/meta.yaml b/recipes/bioconductor-cobindr/meta.yaml index b411be8af30a0..bffb79ebcfb30 100644 --- a/recipes/bioconductor-cobindr/meta.yaml +++ b/recipes/bioconductor-cobindr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 435e9185e8656279a82919a21d95a5fd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cocitestats/meta.yaml b/recipes/bioconductor-cocitestats/meta.yaml index bfb6ac11fc978..4414e3bf9d210 100644 --- a/recipes/bioconductor-cocitestats/meta.yaml +++ b/recipes/bioconductor-cocitestats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4b07800c4a99cf17a31094fd78d7ce6e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cocoa/meta.yaml b/recipes/bioconductor-cocoa/meta.yaml index 5c8a1840368d1..b50fa613a4f16 100644 --- a/recipes/bioconductor-cocoa/meta.yaml +++ b/recipes/bioconductor-cocoa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2a3284970a78abe427089c9bc74f4076 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-codelink/meta.yaml b/recipes/bioconductor-codelink/meta.yaml index 838f251919067..aad87eef18f1f 100644 --- a/recipes/bioconductor-codelink/meta.yaml +++ b/recipes/bioconductor-codelink/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b7c747213e454bfb4f6f8191815d36ec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-codex/meta.yaml b/recipes/bioconductor-codex/meta.yaml index 822136f4ddd84..7d2db32ba598b 100644 --- a/recipes/bioconductor-codex/meta.yaml +++ b/recipes/bioconductor-codex/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a17ebe2c29dccb53f92d0417d22f2363 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-coexnet/meta.yaml b/recipes/bioconductor-coexnet/meta.yaml index 97f8102a1acea..38a8724cd1829 100644 --- a/recipes/bioconductor-coexnet/meta.yaml +++ b/recipes/bioconductor-coexnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2dc427a31e354e132cf875cf6378ed8f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cogaps/build.sh b/recipes/bioconductor-cogaps/build.sh index c1d13421f5f1e..07cdd9040a9f5 100644 --- a/recipes/bioconductor-cogaps/build.sh +++ b/recipes/bioconductor-cogaps/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +touch CoGAPS +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-cogaps/meta.yaml b/recipes/bioconductor-cogaps/meta.yaml index 604d41f7bc488..f26e043d1d2a8 100644 --- a/recipes/bioconductor-cogaps/meta.yaml +++ b/recipes/bioconductor-cogaps/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "3.4.0" %} +{% set version = "3.4.1" %} {% set name = "CoGAPS" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: cc5ad88f7e8fcfc7db45e24c979149ea + md5: 636b3400784dc545307e18ff215c12ff build: number: 0 rpaths: diff --git a/recipes/bioconductor-cogena/meta.yaml b/recipes/bioconductor-cogena/meta.yaml index d2c0b2bdfe006..cec6982d8abd5 100644 --- a/recipes/bioconductor-cogena/meta.yaml +++ b/recipes/bioconductor-cogena/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b785e1765e816c29bfaeb53b57fdf454 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cogps/meta.yaml b/recipes/bioconductor-cogps/meta.yaml index b07ee571651ef..4d8d43f1ccf42 100644 --- a/recipes/bioconductor-cogps/meta.yaml +++ b/recipes/bioconductor-cogps/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 49800c742e5b6176809de49f5a58a938 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cohcap/meta.yaml b/recipes/bioconductor-cohcap/meta.yaml index a177bb5ce2cdb..6eff2575d8d6c 100644 --- a/recipes/bioconductor-cohcap/meta.yaml +++ b/recipes/bioconductor-cohcap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8009dc2a7a0bf2f7bdaee07a0802496b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,7 +27,6 @@ requirements: - r-rcpp - r-rcpparmadillo - r-writexls - - perl run: - 'bioconductor-cohcapanno >=1.20.0,<1.21.0' - r-base @@ -37,7 +36,6 @@ requirements: - r-rcpp - r-rcpparmadillo - r-writexls - - perl build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-cohcapanno/meta.yaml b/recipes/bioconductor-cohcapanno/meta.yaml index 48727a57dee25..51f6d5b039cc8 100644 --- a/recipes/bioconductor-cohcapanno/meta.yaml +++ b/recipes/bioconductor-cohcapanno/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7372e4f9927b5c9b1060be2105a3e3f4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cohcapanno/post-link.sh b/recipes/bioconductor-cohcapanno/post-link.sh index 2c439a47a460c..15f56e6a1f04c 100644 --- a/recipes/bioconductor-cohcapanno/post-link.sh +++ b/recipes/bioconductor-cohcapanno/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/COHCAPanno_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/COHCAPanno_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cohcapanno/bioconductor-cohcapanno_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cohcapanno/bioconductor-cohcapanno_1.20.0_src_all.tar.gz" ) MD5="7372e4f9927b5c9b1060be2105a3e3f4" diff --git a/recipes/bioconductor-cola/meta.yaml b/recipes/bioconductor-cola/meta.yaml index fe728c7214b4e..59971d30a760e 100644 --- a/recipes/bioconductor-cola/meta.yaml +++ b/recipes/bioconductor-cola/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 70e16effbf24c03503860821b8a95175 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-colonca/meta.yaml b/recipes/bioconductor-colonca/meta.yaml index 58e9e83c96678..92d3770a013f8 100644 --- a/recipes/bioconductor-colonca/meta.yaml +++ b/recipes/bioconductor-colonca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 26823f01a5ba01edf9e744c98dcb74b3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-colonca/post-link.sh b/recipes/bioconductor-colonca/post-link.sh index c6fcc5287ff0f..52d71ea7918fb 100644 --- a/recipes/bioconductor-colonca/post-link.sh +++ b/recipes/bioconductor-colonca/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/colonCA_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/colonCA_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-colonca/bioconductor-colonca_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-colonca/bioconductor-colonca_1.26.0_src_all.tar.gz" ) MD5="26823f01a5ba01edf9e744c98dcb74b3" diff --git a/recipes/bioconductor-comet/meta.yaml b/recipes/bioconductor-comet/meta.yaml index 5c9c29446a6be..f6029eea6a6db 100644 --- a/recipes/bioconductor-comet/meta.yaml +++ b/recipes/bioconductor-comet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bd89b930a424c677834857e55b7237f3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-compartmap/meta.yaml b/recipes/bioconductor-compartmap/meta.yaml index 117639b5f695c..6d5f7dfc1be17 100644 --- a/recipes/bioconductor-compartmap/meta.yaml +++ b/recipes/bioconductor-compartmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3a5b9a72c01eaef3aafd6f7e8124e83c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,7 +21,7 @@ build: requirements: host: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-minfi >=1.30.0,<1.31.0' - 'bioconductor-mixomics >=6.8.0,<6.9.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' @@ -29,7 +29,7 @@ requirements: - r-gtools run: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-minfi >=1.30.0,<1.31.0' - 'bioconductor-mixomics >=6.8.0,<6.9.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' diff --git a/recipes/bioconductor-compass/meta.yaml b/recipes/bioconductor-compass/meta.yaml index 3434a828b42ec..5edca3d595f83 100644 --- a/recipes/bioconductor-compass/meta.yaml +++ b/recipes/bioconductor-compass/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f3efd33af8043c6ec9b8e668e645e2a5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-compcoder/meta.yaml b/recipes/bioconductor-compcoder/meta.yaml index 8f934374075fb..e77f7033bdfd9 100644 --- a/recipes/bioconductor-compcoder/meta.yaml +++ b/recipes/bioconductor-compcoder/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a5213f6c6339bb117e50a815146de05a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-compepitools/meta.yaml b/recipes/bioconductor-compepitools/meta.yaml index 0bffbfe6360d7..2e2ff215dbe7c 100644 --- a/recipes/bioconductor-compepitools/meta.yaml +++ b/recipes/bioconductor-compepitools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5634de2c34a8a8006e7025d34234797e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-compgo/meta.yaml b/recipes/bioconductor-compgo/meta.yaml index 80271de18554a..769c1e0c2b0cc 100644 --- a/recipes/bioconductor-compgo/meta.yaml +++ b/recipes/bioconductor-compgo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f5dd5a91ff4f0dec75db80fddf3731f5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-complexheatmap/meta.yaml b/recipes/bioconductor-complexheatmap/meta.yaml index 8178a91d0faa7..971fd772577ff 100644 --- a/recipes/bioconductor-complexheatmap/meta.yaml +++ b/recipes/bioconductor-complexheatmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9c18a94275f005a74bf2d7e5a30ff3ea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-condcomp/meta.yaml b/recipes/bioconductor-condcomp/meta.yaml index 068770f382f50..3006d439cb807 100644 --- a/recipes/bioconductor-condcomp/meta.yaml +++ b/recipes/bioconductor-condcomp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0f1919283cb85a0552f82365b33d193e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-confess/build.sh b/recipes/bioconductor-confess/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-confess/build.sh +++ b/recipes/bioconductor-confess/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-confess/meta.yaml b/recipes/bioconductor-confess/meta.yaml index 49e3e49faadf1..0e1a104c97a22 100644 --- a/recipes/bioconductor-confess/meta.yaml +++ b/recipes/bioconductor-confess/meta.yaml @@ -12,13 +12,20 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9d796e40ddb6520234e5a68e3bbb7d2b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic # Suggests: BiocStyle, knitr, rmarkdown, CONFESSdata requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-ebimage >=4.26.0,<4.27.0' - 'bioconductor-flowclust >=3.22.0,<3.23.0' @@ -77,7 +84,7 @@ requirements: - r-zoo test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-2 diff --git a/recipes/bioconductor-confessdata/meta.yaml b/recipes/bioconductor-confessdata/meta.yaml index 9955ddb4cfddb..0c6ec088d6402 100644 --- a/recipes/bioconductor-confessdata/meta.yaml +++ b/recipes/bioconductor-confessdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5a94a77fec0407c04bc72f89934775a1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-confessdata/post-link.sh b/recipes/bioconductor-confessdata/post-link.sh index 6f7b6e6b9cb4c..6c721fe8be232 100644 --- a/recipes/bioconductor-confessdata/post-link.sh +++ b/recipes/bioconductor-confessdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CONFESSdata_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/CONFESSdata_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-confessdata/bioconductor-confessdata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-confessdata/bioconductor-confessdata_1.12.0_src_all.tar.gz" ) MD5="5a94a77fec0407c04bc72f89934775a1" diff --git a/recipes/bioconductor-connectivitymap/meta.yaml b/recipes/bioconductor-connectivitymap/meta.yaml index d9bdc8f0fc30c..a4b9c0e1dc3e4 100644 --- a/recipes/bioconductor-connectivitymap/meta.yaml +++ b/recipes/bioconductor-connectivitymap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0556684e97c094a8206e314400bb5165 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-connectivitymap/post-link.sh b/recipes/bioconductor-connectivitymap/post-link.sh index 7556bb6080c1d..44e715abdec2a 100644 --- a/recipes/bioconductor-connectivitymap/post-link.sh +++ b/recipes/bioconductor-connectivitymap/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ConnectivityMap_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/ConnectivityMap_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-connectivitymap/bioconductor-connectivitymap_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-connectivitymap/bioconductor-connectivitymap_1.20.0_src_all.tar.gz" ) MD5="0556684e97c094a8206e314400bb5165" diff --git a/recipes/bioconductor-consensus/meta.yaml b/recipes/bioconductor-consensus/meta.yaml index 7f8989332fc65..7ccafe9141c6a 100644 --- a/recipes/bioconductor-consensus/meta.yaml +++ b/recipes/bioconductor-consensus/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.2" %} {% set name = "consensus" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: f3a7d31b7219d56cd48a3b5bc41e9f4d + md5: ab89787df7f89f06fe59e4114a7c6f97 build: number: 0 rpaths: diff --git a/recipes/bioconductor-consensusclusterplus/meta.yaml b/recipes/bioconductor-consensusclusterplus/meta.yaml index 96ef56f4b52ac..ec297a995921e 100644 --- a/recipes/bioconductor-consensusclusterplus/meta.yaml +++ b/recipes/bioconductor-consensusclusterplus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 866829344d197d481e17c6101abd0856 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-consensusde/meta.yaml b/recipes/bioconductor-consensusde/meta.yaml index 2c35afd0b0cb0..0490ad8959314 100644 --- a/recipes/bioconductor-consensusde/meta.yaml +++ b/recipes/bioconductor-consensusde/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.1" %} {% set name = "consensusDE" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 63d574c54e5e9f7305359f14d6c63352 + md5: 9e18073efbd56789ff5da4299ace0074 build: number: 0 rpaths: @@ -29,7 +29,7 @@ requirements: - 'bioconductor-deseq2 >=1.24.0,<1.25.0' - 'bioconductor-edaseq >=2.18.0,<2.19.0' - 'bioconductor-edger >=3.26.0,<3.27.0' - - 'bioconductor-ensdb.hsapiens.v86 >=3.0.0,<3.1.0' + - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0' - 'bioconductor-ensembldb >=2.8.0,<2.9.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' @@ -42,6 +42,7 @@ requirements: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0' - r-base + - r-data.table - r-dendextend - r-rcolorbrewer run: @@ -54,7 +55,7 @@ requirements: - 'bioconductor-deseq2 >=1.24.0,<1.25.0' - 'bioconductor-edaseq >=2.18.0,<2.19.0' - 'bioconductor-edger >=3.26.0,<3.27.0' - - 'bioconductor-ensdb.hsapiens.v86 >=3.0.0,<3.1.0' + - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0' - 'bioconductor-ensembldb >=2.8.0,<2.9.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' @@ -67,6 +68,7 @@ requirements: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0' - r-base + - r-data.table - r-dendextend - r-rcolorbrewer test: @@ -75,5 +77,5 @@ test: about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-3 - summary: 'This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports "Voom", "EdgeR" and "DESeq". It uses RUV-seq (optional) to remove batch effects.' + summary: 'This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports "Voom", "EdgeR" and "DESeq". It uses RUV-seq (optional) to remove unwanted sources of variation.' diff --git a/recipes/bioconductor-consensusov/meta.yaml b/recipes/bioconductor-consensusov/meta.yaml index 5a0231baff16b..77af56a2f5ccd 100644 --- a/recipes/bioconductor-consensusov/meta.yaml +++ b/recipes/bioconductor-consensusov/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: edacb8fa98a32c5388bfed32307b3496 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-consensusseeker/meta.yaml b/recipes/bioconductor-consensusseeker/meta.yaml index 0cafa21deefbb..26653f197b6a8 100644 --- a/recipes/bioconductor-consensusseeker/meta.yaml +++ b/recipes/bioconductor-consensusseeker/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ddf046f4b7cc24ef7da7f0172594de24 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-contibait/meta.yaml b/recipes/bioconductor-contibait/meta.yaml index a1045033f6cd0..77877aa3b9b79 100644 --- a/recipes/bioconductor-contibait/meta.yaml +++ b/recipes/bioconductor-contibait/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d6a506be45a84ec08ecd8a6434d47fc8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-conumee/meta.yaml b/recipes/bioconductor-conumee/meta.yaml index c726638cc6bda..3e967922dc829 100644 --- a/recipes/bioconductor-conumee/meta.yaml +++ b/recipes/bioconductor-conumee/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 19965541916026a8a1ddd80627772222 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -26,7 +26,7 @@ requirements: - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0' - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0' - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0' - - 'bioconductor-illuminahumanmethylationepicmanifest >=0.4.0,<0.5.0' + - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-minfi >=1.30.0,<1.31.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' @@ -38,7 +38,7 @@ requirements: - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0' - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0' - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0' - - 'bioconductor-illuminahumanmethylationepicmanifest >=0.4.0,<0.5.0' + - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-minfi >=1.30.0,<1.31.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' diff --git a/recipes/bioconductor-convert/meta.yaml b/recipes/bioconductor-convert/meta.yaml index f7c35ac57ec1a..182762724641f 100644 --- a/recipes/bioconductor-convert/meta.yaml +++ b/recipes/bioconductor-convert/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f4e2775a7a35742a6ce8265d2156a2d9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-copa/meta.yaml b/recipes/bioconductor-copa/meta.yaml index 81cd3d936af90..3b2d35ba24a5f 100644 --- a/recipes/bioconductor-copa/meta.yaml +++ b/recipes/bioconductor-copa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ebc47c86e5c884013d3b4f0fd4366c42 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-copdsexualdimorphism.data/meta.yaml b/recipes/bioconductor-copdsexualdimorphism.data/meta.yaml index 8505e1c032665..5d3d76f9e33b8 100644 --- a/recipes/bioconductor-copdsexualdimorphism.data/meta.yaml +++ b/recipes/bioconductor-copdsexualdimorphism.data/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 47555d52e02a3b6d87bbe39a18174531 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-copdsexualdimorphism.data/post-link.sh b/recipes/bioconductor-copdsexualdimorphism.data/post-link.sh index fd8a19f2cef01..09361a0228653 100644 --- a/recipes/bioconductor-copdsexualdimorphism.data/post-link.sh +++ b/recipes/bioconductor-copdsexualdimorphism.data/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/COPDSexualDimorphism.data_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/COPDSexualDimorphism.data_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-copdsexualdimorphism.data/bioconductor-copdsexualdimorphism.data_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-copdsexualdimorphism.data/bioconductor-copdsexualdimorphism.data_1.20.0_src_all.tar.gz" ) MD5="47555d52e02a3b6d87bbe39a18174531" diff --git a/recipes/bioconductor-copyhelper/meta.yaml b/recipes/bioconductor-copyhelper/meta.yaml index 09c190580586b..379adcca82689 100644 --- a/recipes/bioconductor-copyhelper/meta.yaml +++ b/recipes/bioconductor-copyhelper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d2c50c7ac853e6f631111da79fe7bc03 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-copyhelper/post-link.sh b/recipes/bioconductor-copyhelper/post-link.sh index c7693001c26c4..bb0d18a5cfc4c 100644 --- a/recipes/bioconductor-copyhelper/post-link.sh +++ b/recipes/bioconductor-copyhelper/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CopyhelpeR_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/CopyhelpeR_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-copyhelper/bioconductor-copyhelper_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-copyhelper/bioconductor-copyhelper_1.16.0_src_all.tar.gz" ) MD5="d2c50c7ac853e6f631111da79fe7bc03" diff --git a/recipes/bioconductor-copyneutralima/meta.yaml b/recipes/bioconductor-copyneutralima/meta.yaml index c6e0a8f2399d7..566ba8efff801 100644 --- a/recipes/bioconductor-copyneutralima/meta.yaml +++ b/recipes/bioconductor-copyneutralima/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 99b9b248b03ad09a1b274a986d0a6b54 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-copyneutralima/post-link.sh b/recipes/bioconductor-copyneutralima/post-link.sh index 2a0a463bc6595..42d8de097388f 100644 --- a/recipes/bioconductor-copyneutralima/post-link.sh +++ b/recipes/bioconductor-copyneutralima/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CopyNeutralIMA_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/CopyNeutralIMA_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-copyneutralima/bioconductor-copyneutralima_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-copyneutralima/bioconductor-copyneutralima_1.2.0_src_all.tar.gz" ) MD5="99b9b248b03ad09a1b274a986d0a6b54" diff --git a/recipes/bioconductor-copynumber/meta.yaml b/recipes/bioconductor-copynumber/meta.yaml index 5ccd4cc16629a..3b29ebfa6307d 100644 --- a/recipes/bioconductor-copynumber/meta.yaml +++ b/recipes/bioconductor-copynumber/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 465a840dd46f78b16e9eb8f9b2d31865 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-copynumberplots/meta.yaml b/recipes/bioconductor-copynumberplots/meta.yaml index 1d1646287e5df..225bbf2dd37b2 100644 --- a/recipes/bioconductor-copynumberplots/meta.yaml +++ b/recipes/bioconductor-copynumberplots/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "CopyNumberPlots" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: b71e6933cfcd629d6f4ce65f5f5eabed + md5: 1897a7b069665e5d40019ba315ab42c5 build: number: 0 rpaths: diff --git a/recipes/bioconductor-copywriter/meta.yaml b/recipes/bioconductor-copywriter/meta.yaml index c632f2264c834..14d42a1ac109e 100644 --- a/recipes/bioconductor-copywriter/meta.yaml +++ b/recipes/bioconductor-copywriter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b3ff89f23a907740463bf7282689f384 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cordon/meta.yaml b/recipes/bioconductor-cordon/meta.yaml index a4a5b53e9cac7..f30ea0bb94a22 100644 --- a/recipes/bioconductor-cordon/meta.yaml +++ b/recipes/bioconductor-cordon/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9fbd4bba3bbbd8fb23a683170a77cf0f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-coregflux/meta.yaml b/recipes/bioconductor-coregflux/meta.yaml index 246425a2120f0..1d79c38f11f94 100644 --- a/recipes/bioconductor-coregflux/meta.yaml +++ b/recipes/bioconductor-coregflux/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1166cd531721136b6d1825bc83c82cbd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,12 +22,10 @@ build: requirements: host: - 'bioconductor-coregnet >=1.22.0,<1.23.0' - - glpk - r-base - r-sybil run: - 'bioconductor-coregnet >=1.22.0,<1.23.0' - - glpk - r-base - r-sybil test: diff --git a/recipes/bioconductor-coregnet/meta.yaml b/recipes/bioconductor-coregnet/meta.yaml index 5d109ab6d913e..a5307caa43eab 100644 --- a/recipes/bioconductor-coregnet/meta.yaml +++ b/recipes/bioconductor-coregnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 15562e61d7856a361e519160696701e1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cormotif/meta.yaml b/recipes/bioconductor-cormotif/meta.yaml index 9741acaea8cee..7285b8bd9cf9f 100644 --- a/recipes/bioconductor-cormotif/meta.yaml +++ b/recipes/bioconductor-cormotif/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f2fb657c778e48018575f928a729f606 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cormut/meta.yaml b/recipes/bioconductor-cormut/meta.yaml index d2a59cac9326a..eacde70299e67 100644 --- a/recipes/bioconductor-cormut/meta.yaml +++ b/recipes/bioconductor-cormut/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7b38f2d9cd75e9410e2cce41b0b45f40 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-correp/meta.yaml b/recipes/bioconductor-correp/meta.yaml index 853a3ef31ac7f..2f2686979ed93 100644 --- a/recipes/bioconductor-correp/meta.yaml +++ b/recipes/bioconductor-correp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 337c57abb391e1b24492671e8e479594 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-coseq/meta.yaml b/recipes/bioconductor-coseq/meta.yaml index 93c15546b7b6b..4ec819616a1b6 100644 --- a/recipes/bioconductor-coseq/meta.yaml +++ b/recipes/bioconductor-coseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ca85966ba23706ba1f3ce752d4c43a17 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cosmic.67/meta.yaml b/recipes/bioconductor-cosmic.67/meta.yaml index eb42029cedfa5..84b2dfd22ceca 100644 --- a/recipes/bioconductor-cosmic.67/meta.yaml +++ b/recipes/bioconductor-cosmic.67/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4ddee996e33164a4f0d0034c438b7783 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cosmic.67/post-link.sh b/recipes/bioconductor-cosmic.67/post-link.sh index cf6e46d32a492..1451f6bd4b3ce 100644 --- a/recipes/bioconductor-cosmic.67/post-link.sh +++ b/recipes/bioconductor-cosmic.67/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/COSMIC.67_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/COSMIC.67_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-cosmic.67/bioconductor-cosmic.67_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-cosmic.67/bioconductor-cosmic.67_1.20.0_src_all.tar.gz" ) MD5="4ddee996e33164a4f0d0034c438b7783" diff --git a/recipes/bioconductor-cosmiq/meta.yaml b/recipes/bioconductor-cosmiq/meta.yaml index a4bcf544ebb79..ce8f91250a1c8 100644 --- a/recipes/bioconductor-cosmiq/meta.yaml +++ b/recipes/bioconductor-cosmiq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7280905e37ca78bd4d6557311fe07d18 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cosnet/meta.yaml b/recipes/bioconductor-cosnet/meta.yaml index 1f5eb987b7db7..eeefa6c8196cb 100644 --- a/recipes/bioconductor-cosnet/meta.yaml +++ b/recipes/bioconductor-cosnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5db1fd2a292bb507438470c11477910c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cottoncdf/meta.yaml b/recipes/bioconductor-cottoncdf/meta.yaml index 8b6bc4600348f..aabf3540684a2 100644 --- a/recipes/bioconductor-cottoncdf/meta.yaml +++ b/recipes/bioconductor-cottoncdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b9d2a4b43235c6e531b78cca006e84b2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cottonprobe/meta.yaml b/recipes/bioconductor-cottonprobe/meta.yaml index adc0c03a7648f..2e39d2528e5ce 100644 --- a/recipes/bioconductor-cottonprobe/meta.yaml +++ b/recipes/bioconductor-cottonprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 032fa94876685820d94526fd56dd0b65 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-countclust/meta.yaml b/recipes/bioconductor-countclust/meta.yaml index 8b4e2469996d4..68fc5aba3ccc3 100644 --- a/recipes/bioconductor-countclust/meta.yaml +++ b/recipes/bioconductor-countclust/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b9aa36dedfc2a7fb087e027e2e40d7bf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-countsimqc/meta.yaml b/recipes/bioconductor-countsimqc/meta.yaml index d645dc639a4b7..7e2f979f93621 100644 --- a/recipes/bioconductor-countsimqc/meta.yaml +++ b/recipes/bioconductor-countsimqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0cff7db1e83c85c84ad72f5e24fac4ef build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-coveb/meta.yaml b/recipes/bioconductor-coveb/meta.yaml index ddfef7c1118c2..7bbb1c440f1a7 100644 --- a/recipes/bioconductor-coveb/meta.yaml +++ b/recipes/bioconductor-coveb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d936d0ebb4fe7540db44a8d77c60f770 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-coverageview/meta.yaml b/recipes/bioconductor-coverageview/meta.yaml index c09d3c623149d..d1900f4d8769a 100644 --- a/recipes/bioconductor-coverageview/meta.yaml +++ b/recipes/bioconductor-coverageview/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3713144fc6a492d347e4d0088705dd06 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-covrna/meta.yaml b/recipes/bioconductor-covrna/meta.yaml index 61350bf35df46..beb3ab022a220 100644 --- a/recipes/bioconductor-covrna/meta.yaml +++ b/recipes/bioconductor-covrna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 45420d33aa33dc000e6d93bd9631c602 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cpvsnp/meta.yaml b/recipes/bioconductor-cpvsnp/meta.yaml index d3512e252126d..f8943b0f7d107 100644 --- a/recipes/bioconductor-cpvsnp/meta.yaml +++ b/recipes/bioconductor-cpvsnp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fe5f5b8dd0f39d5fec228b88b0a702a4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cqn/meta.yaml b/recipes/bioconductor-cqn/meta.yaml index 08ac8fefe6518..1effb9c91dafa 100644 --- a/recipes/bioconductor-cqn/meta.yaml +++ b/recipes/bioconductor-cqn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3cdf1037d31884fe295ff7ab0bdc68da build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-crcl18/meta.yaml b/recipes/bioconductor-crcl18/meta.yaml index 5bbccb442f584..2229b59e4237a 100644 --- a/recipes/bioconductor-crcl18/meta.yaml +++ b/recipes/bioconductor-crcl18/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: acaf9fea6a3b3fc312d3fe77a0157e93 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-crcl18/post-link.sh b/recipes/bioconductor-crcl18/post-link.sh index 5b6927e204fc9..24140c8150e7b 100644 --- a/recipes/bioconductor-crcl18/post-link.sh +++ b/recipes/bioconductor-crcl18/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/CRCL18_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/CRCL18_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-crcl18/bioconductor-crcl18_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-crcl18/bioconductor-crcl18_1.4.0_src_all.tar.gz" ) MD5="acaf9fea6a3b3fc312d3fe77a0157e93" diff --git a/recipes/bioconductor-crimage/meta.yaml b/recipes/bioconductor-crimage/meta.yaml index 58eb38d22d211..3b370ee294be2 100644 --- a/recipes/bioconductor-crimage/meta.yaml +++ b/recipes/bioconductor-crimage/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7ace556d1951e5c55d93d081953153a2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-crisprseek/meta.yaml b/recipes/bioconductor-crisprseek/meta.yaml index f1c759b1d751e..444e4347235f9 100644 --- a/recipes/bioconductor-crisprseek/meta.yaml +++ b/recipes/bioconductor-crisprseek/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9dbb4cffe40d991680210919a4db879d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-crisprseekplus/meta.yaml b/recipes/bioconductor-crisprseekplus/meta.yaml index 7b7b78d471674..4843aad341bdf 100644 --- a/recipes/bioconductor-crisprseekplus/meta.yaml +++ b/recipes/bioconductor-crisprseekplus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 14baca0d404914db60ec75a333550e12 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-crisprvariants/meta.yaml b/recipes/bioconductor-crisprvariants/meta.yaml index 949ea8cdc8168..29ca96d4dc95a 100644 --- a/recipes/bioconductor-crisprvariants/meta.yaml +++ b/recipes/bioconductor-crisprvariants/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ef9f95207557f57a1c1818c45a21eb7b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-crlmm/meta.yaml b/recipes/bioconductor-crlmm/meta.yaml index 16cc0af663de5..40ff112baf7d6 100644 --- a/recipes/bioconductor-crlmm/meta.yaml +++ b/recipes/bioconductor-crlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 73c3522b65b499db015b7027fd1d349f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-crossmeta/meta.yaml b/recipes/bioconductor-crossmeta/meta.yaml index 3a6c8721b83e4..d8d29f01bcc54 100644 --- a/recipes/bioconductor-crossmeta/meta.yaml +++ b/recipes/bioconductor-crossmeta/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a7e2ea603db3fedc20fb7783003eeedb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-csar/meta.yaml b/recipes/bioconductor-csar/meta.yaml index 41442376039a3..5949c1245b2b4 100644 --- a/recipes/bioconductor-csar/meta.yaml +++ b/recipes/bioconductor-csar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a7187a296ff5f634727e0d4d8c277b6f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-csaw/meta.yaml b/recipes/bioconductor-csaw/meta.yaml index 055ae2c6fe5e8..17a8058b4d5a3 100644 --- a/recipes/bioconductor-csaw/meta.yaml +++ b/recipes/bioconductor-csaw/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9bd64f602a67ea5a18eabc7ecef5d031 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cssp/meta.yaml b/recipes/bioconductor-cssp/meta.yaml index c628376cd4a9d..d535f519cba3d 100644 --- a/recipes/bioconductor-cssp/meta.yaml +++ b/recipes/bioconductor-cssp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0df8f08ebb21ddcea13f1b3a096f28dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ctc/meta.yaml b/recipes/bioconductor-ctc/meta.yaml index 0b6dca1c9fff8..32798732cb39d 100644 --- a/recipes/bioconductor-ctc/meta.yaml +++ b/recipes/bioconductor-ctc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8c4c2f9b987498ff1fe4f73d0354ae23 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ctdquerier/meta.yaml b/recipes/bioconductor-ctdquerier/meta.yaml index 72ab4ffb40500..792f957443a39 100644 --- a/recipes/bioconductor-ctdquerier/meta.yaml +++ b/recipes/bioconductor-ctdquerier/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b17b3506564035fe23a6e0e92d163fac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ctrap/meta.yaml b/recipes/bioconductor-ctrap/meta.yaml index bb713504a42ef..9f1a6fd9da3d6 100644 --- a/recipes/bioconductor-ctrap/meta.yaml +++ b/recipes/bioconductor-ctrap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a3b7c8688824fa8c631f6675c0438dd2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ctsge/meta.yaml b/recipes/bioconductor-ctsge/meta.yaml index 6489ecff6e131..1bbc55a90ea1c 100644 --- a/recipes/bioconductor-ctsge/meta.yaml +++ b/recipes/bioconductor-ctsge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 82dbb0de98157d7ddc1ecde7ed463bdc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cummerbund/meta.yaml b/recipes/bioconductor-cummerbund/meta.yaml index 937a7ada787d5..35b5c2bfa4c73 100644 --- a/recipes/bioconductor-cummerbund/meta.yaml +++ b/recipes/bioconductor-cummerbund/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9d6f7bf9e12be69be7391f2f369f9f0d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-curatedadipochip/meta.yaml b/recipes/bioconductor-curatedadipochip/meta.yaml index 9a5cd5bb3ffb4..e6b8b23e6e19c 100644 --- a/recipes/bioconductor-curatedadipochip/meta.yaml +++ b/recipes/bioconductor-curatedadipochip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bd1152653faf9424562c638ea8fc1ded build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-curatedadipochip/post-link.sh b/recipes/bioconductor-curatedadipochip/post-link.sh index 954f9c81a2581..07bdfe3e3f7bc 100644 --- a/recipes/bioconductor-curatedadipochip/post-link.sh +++ b/recipes/bioconductor-curatedadipochip/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedAdipoChIP_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/curatedAdipoChIP_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-curatedadipochip/bioconductor-curatedadipochip_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-curatedadipochip/bioconductor-curatedadipochip_1.0.0_src_all.tar.gz" ) MD5="bd1152653faf9424562c638ea8fc1ded" diff --git a/recipes/bioconductor-curatedadiporna/meta.yaml b/recipes/bioconductor-curatedadiporna/meta.yaml index 093b65889e844..f81052b750a1b 100644 --- a/recipes/bioconductor-curatedadiporna/meta.yaml +++ b/recipes/bioconductor-curatedadiporna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4424c4af38fa09e6d09b81c4d485c830 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-curatedadiporna/post-link.sh b/recipes/bioconductor-curatedadiporna/post-link.sh index 51d44ccebb596..ad222693cdc2e 100644 --- a/recipes/bioconductor-curatedadiporna/post-link.sh +++ b/recipes/bioconductor-curatedadiporna/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedAdipoRNA_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/curatedAdipoRNA_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-curatedadiporna/bioconductor-curatedadiporna_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-curatedadiporna/bioconductor-curatedadiporna_1.0.0_src_all.tar.gz" ) MD5="4424c4af38fa09e6d09b81c4d485c830" diff --git a/recipes/bioconductor-curatedbladderdata/meta.yaml b/recipes/bioconductor-curatedbladderdata/meta.yaml index 405bc958b75cb..2ce479e0dd7df 100644 --- a/recipes/bioconductor-curatedbladderdata/meta.yaml +++ b/recipes/bioconductor-curatedbladderdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e81603412d05d4aeef774fb278648872 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-curatedbladderdata/post-link.sh b/recipes/bioconductor-curatedbladderdata/post-link.sh index 8ea7e7f375a88..57d64e483b2d8 100644 --- a/recipes/bioconductor-curatedbladderdata/post-link.sh +++ b/recipes/bioconductor-curatedbladderdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedBladderData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/curatedBladderData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-curatedbladderdata/bioconductor-curatedbladderdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-curatedbladderdata/bioconductor-curatedbladderdata_1.20.0_src_all.tar.gz" ) MD5="e81603412d05d4aeef774fb278648872" diff --git a/recipes/bioconductor-curatedbreastdata/meta.yaml b/recipes/bioconductor-curatedbreastdata/meta.yaml index 51552c6d2b316..cc505661dff38 100644 --- a/recipes/bioconductor-curatedbreastdata/meta.yaml +++ b/recipes/bioconductor-curatedbreastdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 945c48e2f40b55c017fcb7acf33c86d8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-curatedbreastdata/post-link.sh b/recipes/bioconductor-curatedbreastdata/post-link.sh index e8e0ca4f0802f..87982dc4a53a7 100644 --- a/recipes/bioconductor-curatedbreastdata/post-link.sh +++ b/recipes/bioconductor-curatedbreastdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedBreastData_2.12.0.tar.gz" "https://bioarchive.galaxyproject.org/curatedBreastData_2.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-curatedbreastdata/bioconductor-curatedbreastdata_2.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-curatedbreastdata/bioconductor-curatedbreastdata_2.12.0_src_all.tar.gz" ) MD5="945c48e2f40b55c017fcb7acf33c86d8" diff --git a/recipes/bioconductor-curatedcrcdata/meta.yaml b/recipes/bioconductor-curatedcrcdata/meta.yaml index f511c1c8d6337..dc7996e386e9a 100644 --- a/recipes/bioconductor-curatedcrcdata/meta.yaml +++ b/recipes/bioconductor-curatedcrcdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e9df2a3ae6a0b51c081cc3a653045805 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-curatedcrcdata/post-link.sh b/recipes/bioconductor-curatedcrcdata/post-link.sh index 4180107330394..2821339bfd307 100644 --- a/recipes/bioconductor-curatedcrcdata/post-link.sh +++ b/recipes/bioconductor-curatedcrcdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedCRCData_2.16.0.tar.gz" "https://bioarchive.galaxyproject.org/curatedCRCData_2.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-curatedcrcdata/bioconductor-curatedcrcdata_2.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-curatedcrcdata/bioconductor-curatedcrcdata_2.16.0_src_all.tar.gz" ) MD5="e9df2a3ae6a0b51c081cc3a653045805" diff --git a/recipes/bioconductor-curatedmetagenomicdata/meta.yaml b/recipes/bioconductor-curatedmetagenomicdata/meta.yaml index 2e99dd69efcb2..27a3b4a348f81 100644 --- a/recipes/bioconductor-curatedmetagenomicdata/meta.yaml +++ b/recipes/bioconductor-curatedmetagenomicdata/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.13.3" %} +{% set version = "1.14.1" %} {% set name = "curatedMetagenomicData" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 524c855267709a5288cbe910d9f81dec + md5: 8d83fed3572f0f4c679a974c8e2c031c build: - number: 1 + number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: BiocManager, devtools, roxygen2, testthat, covr, knitr, rmarkdown, BiocCheck, BiocStyle, BiocParallel, readr, RISmed, ggplot2, metagenomeSeq, phyloseq, ape +# Suggests: ape, covr, BiocCheck, BiocManager, BiocParallel, BiocStyle, devtools, ggplot2, knitr, metagenomeSeq, phyloseq, readr, RISmed, rmarkdown, roxygen2, testthat requirements: host: - 'bioconductor-annotationhub >=2.16.0,<2.17.0' diff --git a/recipes/bioconductor-curatedmetagenomicdata/post-link.sh b/recipes/bioconductor-curatedmetagenomicdata/post-link.sh index 232480056f811..988c80103d3ea 100644 --- a/recipes/bioconductor-curatedmetagenomicdata/post-link.sh +++ b/recipes/bioconductor-curatedmetagenomicdata/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="curatedMetagenomicData_1.13.3.tar.gz" +FN="curatedMetagenomicData_1.14.1.tar.gz" URLS=( - "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedMetagenomicData_1.13.3.tar.gz" - "https://bioarchive.galaxyproject.org/curatedMetagenomicData_1.13.3.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-curatedmetagenomicdata/bioconductor-curatedmetagenomicdata_1.13.3_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedMetagenomicData_1.14.1.tar.gz" + "https://bioarchive.galaxyproject.org/curatedMetagenomicData_1.14.1.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-curatedmetagenomicdata/bioconductor-curatedmetagenomicdata_1.14.1_src_all.tar.gz" ) -MD5="524c855267709a5288cbe910d9f81dec" +MD5="8d83fed3572f0f4c679a974c8e2c031c" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable diff --git a/recipes/bioconductor-curatedovariandata/meta.yaml b/recipes/bioconductor-curatedovariandata/meta.yaml index f8e8b5c2b56dc..95c9c9ddd6937 100644 --- a/recipes/bioconductor-curatedovariandata/meta.yaml +++ b/recipes/bioconductor-curatedovariandata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1af5517292618a6a05871dbf02953866 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-curatedovariandata/post-link.sh b/recipes/bioconductor-curatedovariandata/post-link.sh index df05f7c5d78b5..0cbbeeb61b70b 100644 --- a/recipes/bioconductor-curatedovariandata/post-link.sh +++ b/recipes/bioconductor-curatedovariandata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedOvarianData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/curatedOvarianData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-curatedovariandata/bioconductor-curatedovariandata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-curatedovariandata/bioconductor-curatedovariandata_1.22.0_src_all.tar.gz" ) MD5="1af5517292618a6a05871dbf02953866" diff --git a/recipes/bioconductor-curatedtcgadata/meta.yaml b/recipes/bioconductor-curatedtcgadata/meta.yaml index ee0902a328202..862dbb4f995b0 100644 --- a/recipes/bioconductor-curatedtcgadata/meta.yaml +++ b/recipes/bioconductor-curatedtcgadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3389cf6624a52501366bbccdcf9d2534 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-curatedtcgadata/post-link.sh b/recipes/bioconductor-curatedtcgadata/post-link.sh index 7cfb2734a6de7..e077d50a31f4a 100644 --- a/recipes/bioconductor-curatedtcgadata/post-link.sh +++ b/recipes/bioconductor-curatedtcgadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/curatedTCGAData_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/curatedTCGAData_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-curatedtcgadata/bioconductor-curatedtcgadata_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-curatedtcgadata/bioconductor-curatedtcgadata_1.6.0_src_all.tar.gz" ) MD5="3389cf6624a52501366bbccdcf9d2534" diff --git a/recipes/bioconductor-customprodb/meta.yaml b/recipes/bioconductor-customprodb/meta.yaml index b24ebff86fe77..0cbb7c2fdead1 100644 --- a/recipes/bioconductor-customprodb/meta.yaml +++ b/recipes/bioconductor-customprodb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f0480be5b51b492ef68898710c8c56aa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cve/meta.yaml b/recipes/bioconductor-cve/meta.yaml index 441e818f83a2b..a57cfa0b5dd3e 100644 --- a/recipes/bioconductor-cve/meta.yaml +++ b/recipes/bioconductor-cve/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2396cfaf7ce6b60195a6af560d5c1d66 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cycle/meta.yaml b/recipes/bioconductor-cycle/meta.yaml index 9a1ab04f5e5f0..e69a0b0de64ff 100644 --- a/recipes/bioconductor-cycle/meta.yaml +++ b/recipes/bioconductor-cycle/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2cd209230387fc9f0631f2d0e1fcd46a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cydar/meta.yaml b/recipes/bioconductor-cydar/meta.yaml index 16ee52632c032..4ae12bc0b3e70 100644 --- a/recipes/bioconductor-cydar/meta.yaml +++ b/recipes/bioconductor-cydar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ce5632a0901f34dd03c93f5d6389a375 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cyp450cdf/meta.yaml b/recipes/bioconductor-cyp450cdf/meta.yaml index 89e2a8ace07e2..3b246453d1c72 100644 --- a/recipes/bioconductor-cyp450cdf/meta.yaml +++ b/recipes/bioconductor-cyp450cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7923c4d24b7b654d0f59d52ed2258eb9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cytodx/meta.yaml b/recipes/bioconductor-cytodx/meta.yaml index ec44264388f57..f17d1dd6677fb 100644 --- a/recipes/bioconductor-cytodx/meta.yaml +++ b/recipes/bioconductor-cytodx/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 28c899b94fb5cac16103e4cd83d76037 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cytofast/meta.yaml b/recipes/bioconductor-cytofast/meta.yaml index a584ce275df04..d5c70aeb13de2 100644 --- a/recipes/bioconductor-cytofast/meta.yaml +++ b/recipes/bioconductor-cytofast/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4400b4f61df017e6f5a9f902d39da411 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cytolib/meta.yaml b/recipes/bioconductor-cytolib/meta.yaml index 1e2f9cdef6f6f..e499e4824ae48 100644 --- a/recipes/bioconductor-cytolib/meta.yaml +++ b/recipes/bioconductor-cytolib/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b485d248ce7346c0beafaff56d68dcd7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-cytoml/meta.yaml b/recipes/bioconductor-cytoml/meta.yaml index 4ae535dea934e..c89f01cac43a9 100644 --- a/recipes/bioconductor-cytoml/meta.yaml +++ b/recipes/bioconductor-cytoml/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9b02fad08a21f76fc73cc24fff7211b1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dada2/meta.yaml b/recipes/bioconductor-dada2/meta.yaml index 5cc2358d035e2..05dc8ab0c23ea 100644 --- a/recipes/bioconductor-dada2/meta.yaml +++ b/recipes/bioconductor-dada2/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.0" %} +{% set version = "1.12.1" %} {% set name = "dada2" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 2aef8b16a4b716f9ad8f42cb0c778483 + md5: ef5237a23b1cc04f92de1d1faac213d9 build: number: 0 rpaths: diff --git a/recipes/bioconductor-daglogo/meta.yaml b/recipes/bioconductor-daglogo/meta.yaml index a5c6ee001e08b..08a0fcdaed818 100644 --- a/recipes/bioconductor-daglogo/meta.yaml +++ b/recipes/bioconductor-daglogo/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.22.0" %} +{% set version = "1.22.2" %} {% set name = "dagLogo" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: d8af40ea859ed3684e1749780be525b7 + md5: 90e32e2f3da9b5d64730fe82ace44264 build: number: 0 rpaths: diff --git a/recipes/bioconductor-dama/meta.yaml b/recipes/bioconductor-dama/meta.yaml index adf30197a5f76..af19a972e34c3 100644 --- a/recipes/bioconductor-dama/meta.yaml +++ b/recipes/bioconductor-dama/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 062d03b002e2ef63716ffbc7d709c9dd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-damirseq/meta.yaml b/recipes/bioconductor-damirseq/meta.yaml index 8530b3c7d39c2..d6234f2d96315 100644 --- a/recipes/bioconductor-damirseq/meta.yaml +++ b/recipes/bioconductor-damirseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 39e1c34e6e3b181a85b1a4ed9f7324f4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dapar/meta.yaml b/recipes/bioconductor-dapar/meta.yaml index 1597bc7aba919..5323d11e8af8a 100644 --- a/recipes/bioconductor-dapar/meta.yaml +++ b/recipes/bioconductor-dapar/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.16.0" %} +{% set version = "1.16.7" %} {% set name = "DAPAR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 50aa903d308f8f41039217f5e4a22a24 + md5: 5c104e654363f977e611b90f26645d5d build: number: 0 rpaths: diff --git a/recipes/bioconductor-dapardata/meta.yaml b/recipes/bioconductor-dapardata/meta.yaml index 3bd968f4dab19..0013645011e5f 100644 --- a/recipes/bioconductor-dapardata/meta.yaml +++ b/recipes/bioconductor-dapardata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4807b95a2b0aea5cc46adb360a165383 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dapardata/post-link.sh b/recipes/bioconductor-dapardata/post-link.sh index 6083615b41b12..fbb44962b88f0 100644 --- a/recipes/bioconductor-dapardata/post-link.sh +++ b/recipes/bioconductor-dapardata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DAPARdata_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/DAPARdata_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dapardata/bioconductor-dapardata_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dapardata/bioconductor-dapardata_1.14.0_src_all.tar.gz" ) MD5="4807b95a2b0aea5cc46adb360a165383" diff --git a/recipes/bioconductor-dart/meta.yaml b/recipes/bioconductor-dart/meta.yaml index 465d3cef25617..64acc76bed4fe 100644 --- a/recipes/bioconductor-dart/meta.yaml +++ b/recipes/bioconductor-dart/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3e0b9ba160194b3200963009133620ba build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-davidtiling/meta.yaml b/recipes/bioconductor-davidtiling/meta.yaml index 2150f47894fa3..726e298d06308 100644 --- a/recipes/bioconductor-davidtiling/meta.yaml +++ b/recipes/bioconductor-davidtiling/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fc322c673362b180aacb0e2f381db62c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-davidtiling/post-link.sh b/recipes/bioconductor-davidtiling/post-link.sh index d3975a1b290f2..f21ed33663c24 100644 --- a/recipes/bioconductor-davidtiling/post-link.sh +++ b/recipes/bioconductor-davidtiling/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/davidTiling_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/davidTiling_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-davidtiling/bioconductor-davidtiling_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-davidtiling/bioconductor-davidtiling_1.24.0_src_all.tar.gz" ) MD5="fc322c673362b180aacb0e2f381db62c" diff --git a/recipes/bioconductor-dbchip/meta.yaml b/recipes/bioconductor-dbchip/meta.yaml index e9ba801a9fab5..933c1658fff42 100644 --- a/recipes/bioconductor-dbchip/meta.yaml +++ b/recipes/bioconductor-dbchip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8a7945a976f67ca5f9a0e0416c25f485 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dcanr/meta.yaml b/recipes/bioconductor-dcanr/meta.yaml index 99e98ee9441d2..e7051ae626074 100644 --- a/recipes/bioconductor-dcanr/meta.yaml +++ b/recipes/bioconductor-dcanr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3d8ea0c3dd1aec60c5f1cb87bd55cbd3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dcgsa/meta.yaml b/recipes/bioconductor-dcgsa/meta.yaml index 2014c89198346..4ded5a5046840 100644 --- a/recipes/bioconductor-dcgsa/meta.yaml +++ b/recipes/bioconductor-dcgsa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e0657f2cdbcd15aed33108d311ffc6f6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dchiprep/meta.yaml b/recipes/bioconductor-dchiprep/meta.yaml index 0d089d8bac8db..4b25340bad0e4 100644 --- a/recipes/bioconductor-dchiprep/meta.yaml +++ b/recipes/bioconductor-dchiprep/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f2de5544bb683f3c476ac945450a0ac7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ddct/meta.yaml b/recipes/bioconductor-ddct/meta.yaml index dfd658c45e4be..4bf0af7837cf0 100644 --- a/recipes/bioconductor-ddct/meta.yaml +++ b/recipes/bioconductor-ddct/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b211d12a2de05a10f8fa66d8449b8522 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ddpcrclust/meta.yaml b/recipes/bioconductor-ddpcrclust/meta.yaml index 21a2fb3dd5bdc..10d08faeafaaf 100644 --- a/recipes/bioconductor-ddpcrclust/meta.yaml +++ b/recipes/bioconductor-ddpcrclust/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aab48e900fbc6ea52c57c297b0850f62 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-debrowser/meta.yaml b/recipes/bioconductor-debrowser/meta.yaml index 8910efdb23864..2f08e2047e107 100644 --- a/recipes/bioconductor-debrowser/meta.yaml +++ b/recipes/bioconductor-debrowser/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.0" %} +{% set version = "1.12.2" %} {% set name = "debrowser" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 94479c5a1dcccb68dea8c894008bb2e9 + md5: 06b6be1cbaeec239325f8e8492e50652 build: number: 0 rpaths: diff --git a/recipes/bioconductor-decipher/meta.yaml b/recipes/bioconductor-decipher/meta.yaml index 4bd3f029dabd5..a4dce403023b2 100644 --- a/recipes/bioconductor-decipher/meta.yaml +++ b/recipes/bioconductor-decipher/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0bcfc1d4493c22bc9287d6b4525a6f73 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deco/meta.yaml b/recipes/bioconductor-deco/meta.yaml index 372e321257e0a..662e86e045aee 100644 --- a/recipes/bioconductor-deco/meta.yaml +++ b/recipes/bioconductor-deco/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c0f8d851c4d54bbb75d233024b60c2e5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-decomplexdisease/meta.yaml b/recipes/bioconductor-decomplexdisease/meta.yaml index 36773ac6904a8..466571294e488 100644 --- a/recipes/bioconductor-decomplexdisease/meta.yaml +++ b/recipes/bioconductor-decomplexdisease/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 513c04ff3be9a08ec70f54c148c44879 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-decomptumor2sig/meta.yaml b/recipes/bioconductor-decomptumor2sig/meta.yaml index b42a2b825ed2a..991c89fe51b0c 100644 --- a/recipes/bioconductor-decomptumor2sig/meta.yaml +++ b/recipes/bioconductor-decomptumor2sig/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a1ad320d7db408fc59c16dfc97b0578d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deconrnaseq/meta.yaml b/recipes/bioconductor-deconrnaseq/meta.yaml index abf86ebd6d110..aa5c4e586b2b3 100644 --- a/recipes/bioconductor-deconrnaseq/meta.yaml +++ b/recipes/bioconductor-deconrnaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e5ef95e4fa67c3af0692a3fc2fbd4f64 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-decontam/meta.yaml b/recipes/bioconductor-decontam/meta.yaml index f30a5ca4d924f..cb44b191dbf91 100644 --- a/recipes/bioconductor-decontam/meta.yaml +++ b/recipes/bioconductor-decontam/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ac1669c915a51167c800d83b008ad20c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deds/meta.yaml b/recipes/bioconductor-deds/meta.yaml index 9225e3e3ab3a9..942700a919d97 100644 --- a/recipes/bioconductor-deds/meta.yaml +++ b/recipes/bioconductor-deds/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7ac7e8cf17dab9cd14df45cd2beb9fe8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deepbluer/meta.yaml b/recipes/bioconductor-deepbluer/meta.yaml index e79fcbc24dcb0..2fa3abe34d90e 100644 --- a/recipes/bioconductor-deepbluer/meta.yaml +++ b/recipes/bioconductor-deepbluer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 40b7e1b2d6736d0ce796bfad122568c4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deepsnv/meta.yaml b/recipes/bioconductor-deepsnv/meta.yaml index 530ec7980cfe3..f07cd864e4850 100644 --- a/recipes/bioconductor-deepsnv/meta.yaml +++ b/recipes/bioconductor-deepsnv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2547a2cad930d74948b182b285df1c07 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deformats/meta.yaml b/recipes/bioconductor-deformats/meta.yaml index 46b2862b76fe0..7a40b4720439a 100644 --- a/recipes/bioconductor-deformats/meta.yaml +++ b/recipes/bioconductor-deformats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5d280ee04668d89bdf8065b18451f7aa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-degraph/meta.yaml b/recipes/bioconductor-degraph/meta.yaml index e19fefe66c90d..0fecd541f0354 100644 --- a/recipes/bioconductor-degraph/meta.yaml +++ b/recipes/bioconductor-degraph/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 29e1cfa7fe5e9ea44f6ac99e847e9fde build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-degreport/meta.yaml b/recipes/bioconductor-degreport/meta.yaml index 07ca4aa9622f3..58e547f07200a 100644 --- a/recipes/bioconductor-degreport/meta.yaml +++ b/recipes/bioconductor-degreport/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d46192672effa5839311e532c523465f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-degseq/meta.yaml b/recipes/bioconductor-degseq/meta.yaml index c1689dd952da9..8630b4c55d493 100644 --- a/recipes/bioconductor-degseq/meta.yaml +++ b/recipes/bioconductor-degseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6c69744cb13c43d7a0d91bb0b045c5b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-delayedarray/meta.yaml b/recipes/bioconductor-delayedarray/meta.yaml index c0c909bcb8637..38a0561f4f559 100644 --- a/recipes/bioconductor-delayedarray/meta.yaml +++ b/recipes/bioconductor-delayedarray/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7ae9f998c8c10a0807dd4fc56c6c90c9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-delayeddataframe/meta.yaml b/recipes/bioconductor-delayeddataframe/meta.yaml index 6fd9db6831f09..cb92e1ff61f1d 100644 --- a/recipes/bioconductor-delayeddataframe/meta.yaml +++ b/recipes/bioconductor-delayeddataframe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 60d192f4f76c29989e1feb0e47d23660 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-delayedmatrixstats/meta.yaml b/recipes/bioconductor-delayedmatrixstats/meta.yaml index 07227e0f29344..3b3b0311c4800 100644 --- a/recipes/bioconductor-delayedmatrixstats/meta.yaml +++ b/recipes/bioconductor-delayedmatrixstats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9e0435b260c7b5e1d7608a7214ae93f8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deltagseg/meta.yaml b/recipes/bioconductor-deltagseg/meta.yaml index 07e17322be6e3..237f681c5d568 100644 --- a/recipes/bioconductor-deltagseg/meta.yaml +++ b/recipes/bioconductor-deltagseg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 05b04ca791d4530c8edd16df31f2a2c4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-demand/meta.yaml b/recipes/bioconductor-demand/meta.yaml index 90000a6f4ff4e..482aa7ae90322 100644 --- a/recipes/bioconductor-demand/meta.yaml +++ b/recipes/bioconductor-demand/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2dbb15daf66fb5efe935fee33d49fd7b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-demixt/meta.yaml b/recipes/bioconductor-demixt/meta.yaml index 781f08a78564a..6ef217176b90c 100644 --- a/recipes/bioconductor-demixt/meta.yaml +++ b/recipes/bioconductor-demixt/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.2" %} {% set name = "DeMixT" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 4799674f409a64b478d86eda7f08ec26 + md5: 046c9450d8aad4e3d8cf935fb51deedc build: number: 0 rpaths: diff --git a/recipes/bioconductor-dep/meta.yaml b/recipes/bioconductor-dep/meta.yaml index 65ea28f13ca34..f21d10fad13ea 100644 --- a/recipes/bioconductor-dep/meta.yaml +++ b/recipes/bioconductor-dep/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://{{ name|lower }}ot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e28b75342a72f73f471ecd755df87539 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-depecher/meta.yaml b/recipes/bioconductor-depecher/meta.yaml index 10a234aa6cd49..ba7f8302ee600 100644 --- a/recipes/bioconductor-depecher/meta.yaml +++ b/recipes/bioconductor-depecher/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.3" %} {% set name = "DepecheR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 40ab211d17a4e171dc6605b97f060268 + md5: 59782a5b2177682de7a2d7c94365d92f build: number: 0 rpaths: diff --git a/recipes/bioconductor-deqms/meta.yaml b/recipes/bioconductor-deqms/meta.yaml index 8718f60c084cc..e8b4051f578d8 100644 --- a/recipes/bioconductor-deqms/meta.yaml +++ b/recipes/bioconductor-deqms/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 06cffbc05f01e49b60ca5cadfe31bc04 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-derfinder/meta.yaml b/recipes/bioconductor-derfinder/meta.yaml index a260039572416..e52d491a56716 100644 --- a/recipes/bioconductor-derfinder/meta.yaml +++ b/recipes/bioconductor-derfinder/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.3" %} {% set name = "derfinder" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 80d3695d822c0007da6786c5bbdbd937 + md5: a048083253ab63059a752d7b47904611 build: number: 0 rpaths: @@ -61,7 +61,13 @@ test: about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 - summary: 'This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.' + summary: 'Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach' + description: | + This package provides functions for annotation-agnostic differential + expression analysis of RNA-seq data. Two implementations of the DER Finder + approach are included in this package: (1) single base-level F-statistics + and (2) DER identification at the expressed regions-level. The DER Finder + approach can also be used to identify differentially bounded ChIP-seq peaks. extra: identifiers: - biotools:derfinder diff --git a/recipes/bioconductor-derfinderdata/meta.yaml b/recipes/bioconductor-derfinderdata/meta.yaml index 3da62139789f2..47e043bf6ee4b 100644 --- a/recipes/bioconductor-derfinderdata/meta.yaml +++ b/recipes/bioconductor-derfinderdata/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.2.0" %} +{% set version = "2.2.1" %} {% set name = "derfinderData" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: f2762c86e4e2d3ec958485e9fc1dae37 + md5: c915d3e6f24850f3c49294539796035b build: number: 0 rpaths: diff --git a/recipes/bioconductor-derfinderdata/post-link.sh b/recipes/bioconductor-derfinderdata/post-link.sh index ea3970e2995ab..f6f9b6739b8df 100644 --- a/recipes/bioconductor-derfinderdata/post-link.sh +++ b/recipes/bioconductor-derfinderdata/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="derfinderData_2.2.0.tar.gz" +FN="derfinderData_2.2.1.tar.gz" URLS=( - "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/derfinderData_2.2.0.tar.gz" - "https://bioarchive.galaxyproject.org/derfinderData_2.2.0.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-derfinderdata/bioconductor-derfinderdata_2.2.0_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/derfinderData_2.2.1.tar.gz" + "https://bioarchive.galaxyproject.org/derfinderData_2.2.1.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-derfinderdata/bioconductor-derfinderdata_2.2.1_src_all.tar.gz" ) -MD5="f2762c86e4e2d3ec958485e9fc1dae37" +MD5="c915d3e6f24850f3c49294539796035b" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable diff --git a/recipes/bioconductor-derfinderhelper/meta.yaml b/recipes/bioconductor-derfinderhelper/meta.yaml index fb14b4a55fa93..9e21d9972b18d 100644 --- a/recipes/bioconductor-derfinderhelper/meta.yaml +++ b/recipes/bioconductor-derfinderhelper/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.1" %} {% set name = "derfinderHelper" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 5ecad5c048563c1ab581036c2af62db8 + md5: 85a1b2f0c51e5caca083f6fc1a14d14c build: number: 0 rpaths: diff --git a/recipes/bioconductor-derfinderplot/meta.yaml b/recipes/bioconductor-derfinderplot/meta.yaml index f860d2f21ff98..5a040572d6fd0 100644 --- a/recipes/bioconductor-derfinderplot/meta.yaml +++ b/recipes/bioconductor-derfinderplot/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.1" %} {% set name = "derfinderPlot" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 445aea23faddd720a00df2e5d9aee4cc + md5: 17d48caee038d128667eb5e94ced3bb5 build: number: 0 rpaths: diff --git a/recipes/bioconductor-descan2/meta.yaml b/recipes/bioconductor-descan2/meta.yaml index 20cc20125bae5..c401441a0fb95 100644 --- a/recipes/bioconductor-descan2/meta.yaml +++ b/recipes/bioconductor-descan2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 601fc7fa0c23f543e35db969282faea5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deseq/meta.yaml b/recipes/bioconductor-deseq/meta.yaml index 15653fc254516..013b399ef3926 100644 --- a/recipes/bioconductor-deseq/meta.yaml +++ b/recipes/bioconductor-deseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2f4ef93911b4e75bc0b470bb0b9d70d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-deseq2/meta.yaml b/recipes/bioconductor-deseq2/meta.yaml index e2839aa0f36a3..f3363b9a06809 100644 --- a/recipes/bioconductor-deseq2/meta.yaml +++ b/recipes/bioconductor-deseq2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 51a2fd660c9f615e5819e795b62c125e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-desingle/meta.yaml b/recipes/bioconductor-desingle/meta.yaml index 1efb64b57883a..a931e30cd32fa 100644 --- a/recipes/bioconductor-desingle/meta.yaml +++ b/recipes/bioconductor-desingle/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f9d286f5314f05cf0ac1f38da3a691ad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-desousa2013/meta.yaml b/recipes/bioconductor-desousa2013/meta.yaml index d3ceeeac019a2..1af7e13d855b5 100644 --- a/recipes/bioconductor-desousa2013/meta.yaml +++ b/recipes/bioconductor-desousa2013/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6772bbad387e983a0f1ba536055635ca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -26,7 +26,7 @@ requirements: - 'bioconductor-frma >=1.36.0,<1.37.0' - 'bioconductor-frmatools >=1.36.0,<1.37.0' - 'bioconductor-hgu133plus2.db >=3.2.0,<3.3.0' - - 'bioconductor-hgu133plus2frmavecs >=1.6.0,<1.7.0' + - 'bioconductor-hgu133plus2frmavecs >=1.5.0,<1.6.0' - 'bioconductor-siggenes >=1.58.0,<1.59.0' - 'bioconductor-sva >=3.32.0,<3.33.0' - r-base @@ -44,7 +44,7 @@ requirements: - 'bioconductor-frma >=1.36.0,<1.37.0' - 'bioconductor-frmatools >=1.36.0,<1.37.0' - 'bioconductor-hgu133plus2.db >=3.2.0,<3.3.0' - - 'bioconductor-hgu133plus2frmavecs >=1.6.0,<1.7.0' + - 'bioconductor-hgu133plus2frmavecs >=1.5.0,<1.6.0' - 'bioconductor-siggenes >=1.58.0,<1.59.0' - 'bioconductor-sva >=3.32.0,<3.33.0' - r-base diff --git a/recipes/bioconductor-desousa2013/post-link.sh b/recipes/bioconductor-desousa2013/post-link.sh index 13ae1399a28a1..6df75b638d69c 100644 --- a/recipes/bioconductor-desousa2013/post-link.sh +++ b/recipes/bioconductor-desousa2013/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DeSousa2013_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/DeSousa2013_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-desousa2013/bioconductor-desousa2013_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-desousa2013/bioconductor-desousa2013_1.20.0_src_all.tar.gz" ) MD5="6772bbad387e983a0f1ba536055635ca" diff --git a/recipes/bioconductor-destiny/meta.yaml b/recipes/bioconductor-destiny/meta.yaml index 78c1b6ff9d718..b2e946e26adc9 100644 --- a/recipes/bioconductor-destiny/meta.yaml +++ b/recipes/bioconductor-destiny/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4b2e28a4eb7022cfad8589c8c6d45ded build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-desubs/meta.yaml b/recipes/bioconductor-desubs/meta.yaml index 97c227dd97aa0..71b1e022e7cdd 100644 --- a/recipes/bioconductor-desubs/meta.yaml +++ b/recipes/bioconductor-desubs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3401c12e1b7b956a302c894862bbff72 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dexseq/meta.yaml b/recipes/bioconductor-dexseq/meta.yaml index 4460f26e8bd5d..faccaca2816c1 100644 --- a/recipes/bioconductor-dexseq/meta.yaml +++ b/recipes/bioconductor-dexseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 756246353a1779eebec78015ca33d881 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dexus/meta.yaml b/recipes/bioconductor-dexus/meta.yaml index 8338f77e67463..ef85b070a3e55 100644 --- a/recipes/bioconductor-dexus/meta.yaml +++ b/recipes/bioconductor-dexus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cb34d5e04455977ed9a0bd3d0f275c1c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dfp/meta.yaml b/recipes/bioconductor-dfp/meta.yaml index 23191220eeb46..7cf1e09dd19e0 100644 --- a/recipes/bioconductor-dfp/meta.yaml +++ b/recipes/bioconductor-dfp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2101788ecc7a5ee2507bfb52ade1a716 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diffbind/meta.yaml b/recipes/bioconductor-diffbind/meta.yaml index 86eed58fbf8c0..f2ba7d9b42645 100644 --- a/recipes/bioconductor-diffbind/meta.yaml +++ b/recipes/bioconductor-diffbind/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ae0905af5e87e5525769294d162ef611 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diffcoexp/meta.yaml b/recipes/bioconductor-diffcoexp/meta.yaml index 66d6577218423..9c49e944490da 100644 --- a/recipes/bioconductor-diffcoexp/meta.yaml +++ b/recipes/bioconductor-diffcoexp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 49a4bd12fa99f28a09013c7e2dbd9fd5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diffcyt/meta.yaml b/recipes/bioconductor-diffcyt/meta.yaml index 1b59a844f006b..ea8c542cedd79 100644 --- a/recipes/bioconductor-diffcyt/meta.yaml +++ b/recipes/bioconductor-diffcyt/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.3" %} {% set name = "diffcyt" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: a442d99ed8adbb5ff80214110a777e67 + md5: 59bc2641c25aff4464e473fdb9b335c7 build: number: 0 rpaths: diff --git a/recipes/bioconductor-diffgeneanalysis/meta.yaml b/recipes/bioconductor-diffgeneanalysis/meta.yaml index fb2acf7854fe2..68b68665379f9 100644 --- a/recipes/bioconductor-diffgeneanalysis/meta.yaml +++ b/recipes/bioconductor-diffgeneanalysis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fba381a248d6938a6eb4eae857a11d76 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diffhic/meta.yaml b/recipes/bioconductor-diffhic/meta.yaml index f67366b49ea53..fddff13681ed9 100644 --- a/recipes/bioconductor-diffhic/meta.yaml +++ b/recipes/bioconductor-diffhic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1b82b5c50751576e1e81fdc2493d7b64 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-difflogo/meta.yaml b/recipes/bioconductor-difflogo/meta.yaml index be8a689240f07..11eb1bc8cbbb1 100644 --- a/recipes/bioconductor-difflogo/meta.yaml +++ b/recipes/bioconductor-difflogo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dcc3efcb7888d29382b8aee7dc141c8e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diffloop/meta.yaml b/recipes/bioconductor-diffloop/meta.yaml index d4b0e42f48792..2c5f6d7c697ee 100644 --- a/recipes/bioconductor-diffloop/meta.yaml +++ b/recipes/bioconductor-diffloop/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9d151ba0bf75463de9f3b0d13d96b5dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diffloopdata/meta.yaml b/recipes/bioconductor-diffloopdata/meta.yaml index ae74cebd526f5..8a655b5e45f37 100644 --- a/recipes/bioconductor-diffloopdata/meta.yaml +++ b/recipes/bioconductor-diffloopdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eb6194f78579441878992b842aa3cbea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diffloopdata/post-link.sh b/recipes/bioconductor-diffloopdata/post-link.sh index c0d52a78466da..74b007e54eb5d 100644 --- a/recipes/bioconductor-diffloopdata/post-link.sh +++ b/recipes/bioconductor-diffloopdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/diffloopdata_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/diffloopdata_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-diffloopdata/bioconductor-diffloopdata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-diffloopdata/bioconductor-diffloopdata_1.12.0_src_all.tar.gz" ) MD5="eb6194f78579441878992b842aa3cbea" diff --git a/recipes/bioconductor-diffustats/meta.yaml b/recipes/bioconductor-diffustats/meta.yaml index bab99461cf5b0..9f5e1f436b29e 100644 --- a/recipes/bioconductor-diffustats/meta.yaml +++ b/recipes/bioconductor-diffustats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2d28196f508d79d81d396b315e840fa8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diggit/meta.yaml b/recipes/bioconductor-diggit/meta.yaml index 2a9837dcf03c4..02137622402f3 100644 --- a/recipes/bioconductor-diggit/meta.yaml +++ b/recipes/bioconductor-diggit/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.15.0" %} +{% set version = "1.16.0" %} {% set name = "diggit" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 222d6a6fca5fd8865aa8d43f99813558 + md5: 03554cd853612f596c1c3d7abbd93ba4 build: number: 0 rpaths: diff --git a/recipes/bioconductor-diggitdata/meta.yaml b/recipes/bioconductor-diggitdata/meta.yaml index dbf5a7719420d..03464949eb613 100644 --- a/recipes/bioconductor-diggitdata/meta.yaml +++ b/recipes/bioconductor-diggitdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a16c7ace0ba38076d549222dc0afb374 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-diggitdata/post-link.sh b/recipes/bioconductor-diggitdata/post-link.sh index 2d259a77534bb..cfe0fc4a30839 100644 --- a/recipes/bioconductor-diggitdata/post-link.sh +++ b/recipes/bioconductor-diggitdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/diggitdata_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/diggitdata_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-diggitdata/bioconductor-diggitdata_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-diggitdata/bioconductor-diggitdata_1.16.0_src_all.tar.gz" ) MD5="a16c7ace0ba38076d549222dc0afb374" diff --git a/recipes/bioconductor-director/meta.yaml b/recipes/bioconductor-director/meta.yaml index d12906c19743a..57fa145f5ad5f 100644 --- a/recipes/bioconductor-director/meta.yaml +++ b/recipes/bioconductor-director/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 531b8d69150abadd2afb8c87c6f7929a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dirichletmultinomial/meta.yaml b/recipes/bioconductor-dirichletmultinomial/meta.yaml index 2a5f15401c44f..0af74ab6989a7 100644 --- a/recipes/bioconductor-dirichletmultinomial/meta.yaml +++ b/recipes/bioconductor-dirichletmultinomial/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ff77746ada0149b0fb99d375f17c4b4d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -24,13 +24,11 @@ requirements: - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - - gsl run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - - gsl build: - {{ compiler('c') }} - make diff --git a/recipes/bioconductor-discordant/meta.yaml b/recipes/bioconductor-discordant/meta.yaml index 50bfd13b6d79c..1127e23db693f 100644 --- a/recipes/bioconductor-discordant/meta.yaml +++ b/recipes/bioconductor-discordant/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 59e96c19225caa973d164391632985a2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-discorhythm/meta.yaml b/recipes/bioconductor-discorhythm/meta.yaml index f54d1d2be550e..522ac33c66184 100644 --- a/recipes/bioconductor-discorhythm/meta.yaml +++ b/recipes/bioconductor-discorhythm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 850593d2b075f4bae3be34fad5eb7727 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -50,7 +50,6 @@ requirements: - r-upsetr - r-venndiagram - r-viridis - - pandoc run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-biocstyle >=2.12.0,<2.13.0' @@ -81,7 +80,6 @@ requirements: - r-upsetr - r-venndiagram - r-viridis - - pandoc test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-divergence/meta.yaml b/recipes/bioconductor-divergence/meta.yaml index 1d7696e3d9c7c..39ce84823a295 100644 --- a/recipes/bioconductor-divergence/meta.yaml +++ b/recipes/bioconductor-divergence/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4aa6ee4b37d749a4349d8da511e87cee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dks/meta.yaml b/recipes/bioconductor-dks/meta.yaml index e00269c164dd2..1af0daafcf02c 100644 --- a/recipes/bioconductor-dks/meta.yaml +++ b/recipes/bioconductor-dks/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 01287b09c7acdd4a20edba7351bdb187 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dlbcl/meta.yaml b/recipes/bioconductor-dlbcl/meta.yaml index 317177887b6b3..1ff2a8347fa07 100644 --- a/recipes/bioconductor-dlbcl/meta.yaml +++ b/recipes/bioconductor-dlbcl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 730b96fa17675ada97131b40a2466c94 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dlbcl/post-link.sh b/recipes/bioconductor-dlbcl/post-link.sh index f49e9f9332f91..7eefe70e92697 100644 --- a/recipes/bioconductor-dlbcl/post-link.sh +++ b/recipes/bioconductor-dlbcl/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DLBCL_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/DLBCL_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dlbcl/bioconductor-dlbcl_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dlbcl/bioconductor-dlbcl_1.24.0_src_all.tar.gz" ) MD5="730b96fa17675ada97131b40a2466c94" diff --git a/recipes/bioconductor-dmchmm/meta.yaml b/recipes/bioconductor-dmchmm/meta.yaml index ffedb5c04a024..5f81feba5d95d 100644 --- a/recipes/bioconductor-dmchmm/meta.yaml +++ b/recipes/bioconductor-dmchmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4b451c76bb34a68bc240b018e31eec15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dmelsgi/meta.yaml b/recipes/bioconductor-dmelsgi/meta.yaml index b4b8edf1b513c..6ddd76a797c7b 100644 --- a/recipes/bioconductor-dmelsgi/meta.yaml +++ b/recipes/bioconductor-dmelsgi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 42c76634466b104f1c93c49d14757b49 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dmelsgi/post-link.sh b/recipes/bioconductor-dmelsgi/post-link.sh index 4dba9e99f1d82..44a4a76943a90 100644 --- a/recipes/bioconductor-dmelsgi/post-link.sh +++ b/recipes/bioconductor-dmelsgi/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DmelSGI_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/DmelSGI_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dmelsgi/bioconductor-dmelsgi_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dmelsgi/bioconductor-dmelsgi_1.16.0_src_all.tar.gz" ) MD5="42c76634466b104f1c93c49d14757b49" diff --git a/recipes/bioconductor-dmrcaller/meta.yaml b/recipes/bioconductor-dmrcaller/meta.yaml index 020295165eedc..f6798296951cf 100644 --- a/recipes/bioconductor-dmrcaller/meta.yaml +++ b/recipes/bioconductor-dmrcaller/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 23001b628eb991beec5ef7ad3921f1b1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dmrcate/meta.yaml b/recipes/bioconductor-dmrcate/meta.yaml index b260dfb9e3a79..6631b8a0d2c59 100644 --- a/recipes/bioconductor-dmrcate/meta.yaml +++ b/recipes/bioconductor-dmrcate/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 835c193be0468ad25fb4eb90bda45c77 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dmrcatedata/meta.yaml b/recipes/bioconductor-dmrcatedata/meta.yaml index 74ce0b2484283..2baf25be47b6c 100644 --- a/recipes/bioconductor-dmrcatedata/meta.yaml +++ b/recipes/bioconductor-dmrcatedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4401fe1a28b3d313d4ec38d5ca48b7fe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dmrcatedata/post-link.sh b/recipes/bioconductor-dmrcatedata/post-link.sh index ecc509268c5dc..aad15e6b24a40 100644 --- a/recipes/bioconductor-dmrcatedata/post-link.sh +++ b/recipes/bioconductor-dmrcatedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DMRcatedata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/DMRcatedata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dmrcatedata/bioconductor-dmrcatedata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dmrcatedata/bioconductor-dmrcatedata_1.20.0_src_all.tar.gz" ) MD5="4401fe1a28b3d313d4ec38d5ca48b7fe" diff --git a/recipes/bioconductor-dmrforpairs/meta.yaml b/recipes/bioconductor-dmrforpairs/meta.yaml index 8f79f51779ffd..6331e552ceaca 100644 --- a/recipes/bioconductor-dmrforpairs/meta.yaml +++ b/recipes/bioconductor-dmrforpairs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4f92ad08fcb9bdbd584cac54e4ed788c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dmrscan/meta.yaml b/recipes/bioconductor-dmrscan/meta.yaml index 7266e9bf3d959..4a1b65e0fb28a 100644 --- a/recipes/bioconductor-dmrscan/meta.yaml +++ b/recipes/bioconductor-dmrscan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b5ecc41efedcac307eea126809b029a4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dmrseq/meta.yaml b/recipes/bioconductor-dmrseq/meta.yaml index 7532b5bd4baca..da1fc75317b66 100644 --- a/recipes/bioconductor-dmrseq/meta.yaml +++ b/recipes/bioconductor-dmrseq/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.9" %} {% set name = "dmrseq" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: cef5b646ee11d99f8fbba86e93a2f9d0 + md5: 91a6080d1836ee9341b3bf0f5f7c45f1 build: number: 0 rpaths: diff --git a/recipes/bioconductor-dnabarcodecompatibility/meta.yaml b/recipes/bioconductor-dnabarcodecompatibility/meta.yaml index bd0f7f7bb71fa..ea16c85516497 100644 --- a/recipes/bioconductor-dnabarcodecompatibility/meta.yaml +++ b/recipes/bioconductor-dnabarcodecompatibility/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.2" %} {% set name = "DNABarcodeCompatibility" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 29d41c899bb70efb83f22cf7405c9122 + md5: b3965fd4f3fe965c79ac6ca2fa5bb0d1 build: number: 0 rpaths: @@ -40,6 +40,6 @@ test: - '$R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' - license: GPL-2 - summary: 'The package allows one to obtain optimized combinations of DNA barcodes to be used for multiplex sequencing. In each barcode combination, barcodes are pooled with respect to Illumina chemistry constraints. Combinations can be filtered to keep those that are robust against substitution and insertion/deletion errors thereby facilitating the demultiplexing step. In addition, the package provides an optimizer function to further favor the selection of barcode combinations with least redundancy of DNA barcodes.' + license: 'file LICENSE' + summary: 'The package allows one to obtain optimised combinations of DNA barcodes to be used for multiplex sequencing. In each barcode combination, barcodes are pooled with respect to Illumina chemistry constraints. Combinations can be filtered to keep those that are robust against substitution and insertion/deletion errors thereby facilitating the demultiplexing step. In addition, the package provides an optimiser function to further favor the selection of barcode combinations with least heterogeneity in barcode usage.' diff --git a/recipes/bioconductor-dnabarcodes/meta.yaml b/recipes/bioconductor-dnabarcodes/meta.yaml index 586784af4292a..ae40d2f754257 100644 --- a/recipes/bioconductor-dnabarcodes/meta.yaml +++ b/recipes/bioconductor-dnabarcodes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d5e24b79f158ae0aa4641b8215e81f7c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dnacopy/meta.yaml b/recipes/bioconductor-dnacopy/meta.yaml index cf5fd383a73ec..cb752410b2bdf 100644 --- a/recipes/bioconductor-dnacopy/meta.yaml +++ b/recipes/bioconductor-dnacopy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 459165b252a246b8cfe1b1dc792079c8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dnashaper/meta.yaml b/recipes/bioconductor-dnashaper/meta.yaml index 22d64e7b5e885..8fb26a714b073 100644 --- a/recipes/bioconductor-dnashaper/meta.yaml +++ b/recipes/bioconductor-dnashaper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7f27913e977cf523165f72f81957c94e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-do.db/meta.yaml b/recipes/bioconductor-do.db/meta.yaml index 5c4027251e89f..a674f469acdb1 100644 --- a/recipes/bioconductor-do.db/meta.yaml +++ b/recipes/bioconductor-do.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 63dda6d46d2fe40c52a2e79260a7fb9d build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dominoeffect/meta.yaml b/recipes/bioconductor-dominoeffect/meta.yaml index 068947e2101e1..5e3db07c56acb 100644 --- a/recipes/bioconductor-dominoeffect/meta.yaml +++ b/recipes/bioconductor-dominoeffect/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 72e2fad413e30de2ff92289505bebbb7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-donapllp2013/meta.yaml b/recipes/bioconductor-donapllp2013/meta.yaml index 173b0bb68a587..05f54555bab57 100644 --- a/recipes/bioconductor-donapllp2013/meta.yaml +++ b/recipes/bioconductor-donapllp2013/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dc254e899f0e9368fea3d2543408970c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-donapllp2013/post-link.sh b/recipes/bioconductor-donapllp2013/post-link.sh index f52fd2e345ba8..2fa5dd4f07453 100644 --- a/recipes/bioconductor-donapllp2013/post-link.sh +++ b/recipes/bioconductor-donapllp2013/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DonaPLLP2013_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/DonaPLLP2013_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-donapllp2013/bioconductor-donapllp2013_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-donapllp2013/bioconductor-donapllp2013_1.22.0_src_all.tar.gz" ) MD5="dc254e899f0e9368fea3d2543408970c" diff --git a/recipes/bioconductor-doppelgangr/meta.yaml b/recipes/bioconductor-doppelgangr/meta.yaml index 62f6ad4d96bdb..69e2ca17c32dc 100644 --- a/recipes/bioconductor-doppelgangr/meta.yaml +++ b/recipes/bioconductor-doppelgangr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e592f39c775f1c9ab21a45f3b9261c6d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-doqtl/meta.yaml b/recipes/bioconductor-doqtl/meta.yaml index d3ae4e69b82a0..5a41f2e8e6e27 100644 --- a/recipes/bioconductor-doqtl/meta.yaml +++ b/recipes/bioconductor-doqtl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 680f81e25019ae46bc2eb0ea51bdd72e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-doscheda/meta.yaml b/recipes/bioconductor-doscheda/meta.yaml index 7fcae1551d602..f37fbc610f418 100644 --- a/recipes/bioconductor-doscheda/meta.yaml +++ b/recipes/bioconductor-doscheda/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f97a7a6534ee3d3c09d0c35e23e71d8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dose/meta.yaml b/recipes/bioconductor-dose/meta.yaml index eea8dbd74da96..1a08a07a21040 100644 --- a/recipes/bioconductor-dose/meta.yaml +++ b/recipes/bioconductor-dose/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "3.10.0" %} +{% set version = "3.10.2" %} {% set name = "DOSE" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: d3c54fe039819f2fec31d8da313ee06e + md5: 282e75af7ce19d94fd035777fb196829 build: number: 0 rpaths: diff --git a/recipes/bioconductor-doser/meta.yaml b/recipes/bioconductor-doser/meta.yaml index 42e597b8c689a..0f60d23b0eed2 100644 --- a/recipes/bioconductor-doser/meta.yaml +++ b/recipes/bioconductor-doser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 66d789556a8eadf0bc626496ca65b490 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drawproteins/meta.yaml b/recipes/bioconductor-drawproteins/meta.yaml index 584dcf181fe90..02a065445026f 100644 --- a/recipes/bioconductor-drawproteins/meta.yaml +++ b/recipes/bioconductor-drawproteins/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cea2f328f8d1343ea7c79eb07a7c0774 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dream4/meta.yaml b/recipes/bioconductor-dream4/meta.yaml index fbb105bee0064..2028e2218f622 100644 --- a/recipes/bioconductor-dream4/meta.yaml +++ b/recipes/bioconductor-dream4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 00d929e1410ebea22bae8e2f9b15ea6e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dream4/post-link.sh b/recipes/bioconductor-dream4/post-link.sh index 6fddfaffbf332..88b85635245aa 100644 --- a/recipes/bioconductor-dream4/post-link.sh +++ b/recipes/bioconductor-dream4/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DREAM4_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/DREAM4_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dream4/bioconductor-dream4_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dream4/bioconductor-dream4_1.20.0_src_all.tar.gz" ) MD5="00d929e1410ebea22bae8e2f9b15ea6e" diff --git a/recipes/bioconductor-dresscheck/meta.yaml b/recipes/bioconductor-dresscheck/meta.yaml index 8376dc3981749..6b33aa2a00a27 100644 --- a/recipes/bioconductor-dresscheck/meta.yaml +++ b/recipes/bioconductor-dresscheck/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7584cc6c48fa1c394fe41c524f7b3854 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dresscheck/post-link.sh b/recipes/bioconductor-dresscheck/post-link.sh index 73786ed6afbca..ec85eec64d339 100644 --- a/recipes/bioconductor-dresscheck/post-link.sh +++ b/recipes/bioconductor-dresscheck/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/dressCheck_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/dressCheck_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dresscheck/bioconductor-dresscheck_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dresscheck/bioconductor-dresscheck_0.22.0_src_all.tar.gz" ) MD5="7584cc6c48fa1c394fe41c524f7b3854" diff --git a/recipes/bioconductor-drimseq/meta.yaml b/recipes/bioconductor-drimseq/meta.yaml index f47c6e3aaa2a7..f64036faa6f63 100644 --- a/recipes/bioconductor-drimseq/meta.yaml +++ b/recipes/bioconductor-drimseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 399bc7fe47de2da27d0f357470c7037e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drivernet/meta.yaml b/recipes/bioconductor-drivernet/meta.yaml index 0a7d79988f6ff..da3c533563d15 100644 --- a/recipes/bioconductor-drivernet/meta.yaml +++ b/recipes/bioconductor-drivernet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5fa9c7883dd6b274a3e22bc1e4b25678 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dropletutils/meta.yaml b/recipes/bioconductor-dropletutils/meta.yaml index e536835350af3..e2541f0900839 100644 --- a/recipes/bioconductor-dropletutils/meta.yaml +++ b/recipes/bioconductor-dropletutils/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.2" %} {% set name = "DropletUtils" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 0678545b0c0f7bb478c1205d9edbc106 + md5: f420b0c970298ba77d2cbb99fc51d8b9 build: number: 0 rpaths: diff --git a/recipes/bioconductor-drosgenome1.db/meta.yaml b/recipes/bioconductor-drosgenome1.db/meta.yaml index 2b1be173a2ed4..14da7fb3bb9b1 100644 --- a/recipes/bioconductor-drosgenome1.db/meta.yaml +++ b/recipes/bioconductor-drosgenome1.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 44bc6356bc04226cba8cb2f3544c4688 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drosgenome1cdf/meta.yaml b/recipes/bioconductor-drosgenome1cdf/meta.yaml index fd360a507fe36..a4d826fb59e2f 100644 --- a/recipes/bioconductor-drosgenome1cdf/meta.yaml +++ b/recipes/bioconductor-drosgenome1cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e12983f2148c10ef1faa50f810b6eee3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drosgenome1probe/meta.yaml b/recipes/bioconductor-drosgenome1probe/meta.yaml index 0d5408499ba7a..d1462ec870aa3 100644 --- a/recipes/bioconductor-drosgenome1probe/meta.yaml +++ b/recipes/bioconductor-drosgenome1probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1f12abdfeee65e8a6554f57507d86fb3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drosophila2.db/meta.yaml b/recipes/bioconductor-drosophila2.db/meta.yaml index 58c594958eee6..488d1dc2194c9 100644 --- a/recipes/bioconductor-drosophila2.db/meta.yaml +++ b/recipes/bioconductor-drosophila2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 04a372eff398f79691216ed9fcc34bc8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drosophila2cdf/meta.yaml b/recipes/bioconductor-drosophila2cdf/meta.yaml index 90891f9d7dd85..50e3264971001 100644 --- a/recipes/bioconductor-drosophila2cdf/meta.yaml +++ b/recipes/bioconductor-drosophila2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3323e723c133ff2b6188e22bebf3e20a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drosophila2probe/meta.yaml b/recipes/bioconductor-drosophila2probe/meta.yaml index c7ab7aee54fe2..6e2d134274a2b 100644 --- a/recipes/bioconductor-drosophila2probe/meta.yaml +++ b/recipes/bioconductor-drosophila2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ba0251902ea0a5f0db61105bdcdc3530 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drugvsdisease/meta.yaml b/recipes/bioconductor-drugvsdisease/meta.yaml index 0afaf2d5e98f4..36ae8aec5fc82 100644 --- a/recipes/bioconductor-drugvsdisease/meta.yaml +++ b/recipes/bioconductor-drugvsdisease/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 548b0dc940cdc16bec2d6b9d610d463c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drugvsdiseasedata/meta.yaml b/recipes/bioconductor-drugvsdiseasedata/meta.yaml index 13de9ba7c89dc..4b48dc41bd868 100644 --- a/recipes/bioconductor-drugvsdiseasedata/meta.yaml +++ b/recipes/bioconductor-drugvsdiseasedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 70457ffd167a803e7b9572c3ee8de757 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-drugvsdiseasedata/post-link.sh b/recipes/bioconductor-drugvsdiseasedata/post-link.sh index efda0beba3f01..4fc031a750af2 100644 --- a/recipes/bioconductor-drugvsdiseasedata/post-link.sh +++ b/recipes/bioconductor-drugvsdiseasedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DrugVsDiseasedata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/DrugVsDiseasedata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-drugvsdiseasedata/bioconductor-drugvsdiseasedata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-drugvsdiseasedata/bioconductor-drugvsdiseasedata_1.20.0_src_all.tar.gz" ) MD5="70457ffd167a803e7b9572c3ee8de757" diff --git a/recipes/bioconductor-dsqtl/meta.yaml b/recipes/bioconductor-dsqtl/meta.yaml index b799655d4b710..9c47d5fbb5856 100644 --- a/recipes/bioconductor-dsqtl/meta.yaml +++ b/recipes/bioconductor-dsqtl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 832fc2afb33890374a5efa553fe276ab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dsqtl/post-link.sh b/recipes/bioconductor-dsqtl/post-link.sh index ad7b12af4e35b..8f1347780806b 100644 --- a/recipes/bioconductor-dsqtl/post-link.sh +++ b/recipes/bioconductor-dsqtl/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/dsQTL_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/dsQTL_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dsqtl/bioconductor-dsqtl_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dsqtl/bioconductor-dsqtl_0.22.0_src_all.tar.gz" ) MD5="832fc2afb33890374a5efa553fe276ab" diff --git a/recipes/bioconductor-dss/meta.yaml b/recipes/bioconductor-dss/meta.yaml index 4adfc9c3d7f5c..31330df54739a 100644 --- a/recipes/bioconductor-dss/meta.yaml +++ b/recipes/bioconductor-dss/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 24e4aa2a0263452f0a28e93a660789f1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dta/meta.yaml b/recipes/bioconductor-dta/meta.yaml index 01c5d59f22c9c..4a6754c2be96a 100644 --- a/recipes/bioconductor-dta/meta.yaml +++ b/recipes/bioconductor-dta/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e4fe6eb840110181a531da530d2ddee4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dualks/meta.yaml b/recipes/bioconductor-dualks/meta.yaml index d665b53c474a0..65f4055c4026b 100644 --- a/recipes/bioconductor-dualks/meta.yaml +++ b/recipes/bioconductor-dualks/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8179aa4020d4188a630cccc07313bc4e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-duoclustering2018/meta.yaml b/recipes/bioconductor-duoclustering2018/meta.yaml index 99537d9b2d3ca..8b12d9be55fa7 100644 --- a/recipes/bioconductor-duoclustering2018/meta.yaml +++ b/recipes/bioconductor-duoclustering2018/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 49e45aac011f59a54755d13f314949c3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-duoclustering2018/post-link.sh b/recipes/bioconductor-duoclustering2018/post-link.sh index 4e77422fa8084..a3c1d15638dd7 100644 --- a/recipes/bioconductor-duoclustering2018/post-link.sh +++ b/recipes/bioconductor-duoclustering2018/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DuoClustering2018_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/DuoClustering2018_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-duoclustering2018/bioconductor-duoclustering2018_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-duoclustering2018/bioconductor-duoclustering2018_1.2.0_src_all.tar.gz" ) MD5="49e45aac011f59a54755d13f314949c3" diff --git a/recipes/bioconductor-dupchecker/meta.yaml b/recipes/bioconductor-dupchecker/meta.yaml index c3b20dddf3183..b30696b6b85cf 100644 --- a/recipes/bioconductor-dupchecker/meta.yaml +++ b/recipes/bioconductor-dupchecker/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f9c7509c929ec424905a344d2a4bf81e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dupradar/meta.yaml b/recipes/bioconductor-dupradar/meta.yaml index 72bea7b46f439..4ad892f765572 100644 --- a/recipes/bioconductor-dupradar/meta.yaml +++ b/recipes/bioconductor-dupradar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f97053380896eef28891a1ea2f6fca70 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dvddata/meta.yaml b/recipes/bioconductor-dvddata/meta.yaml index e18a3ab13d1ad..95fa4981fa30c 100644 --- a/recipes/bioconductor-dvddata/meta.yaml +++ b/recipes/bioconductor-dvddata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 532227658b29e36af2d13ba3d27c4ae5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dvddata/post-link.sh b/recipes/bioconductor-dvddata/post-link.sh index 499098991b39b..4e1d693e17d0c 100644 --- a/recipes/bioconductor-dvddata/post-link.sh +++ b/recipes/bioconductor-dvddata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/DvDdata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/DvDdata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dvddata/bioconductor-dvddata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dvddata/bioconductor-dvddata_1.20.0_src_all.tar.gz" ) MD5="532227658b29e36af2d13ba3d27c4ae5" diff --git a/recipes/bioconductor-dyebias/meta.yaml b/recipes/bioconductor-dyebias/meta.yaml index 92ef298516865..2a37b152f05b1 100644 --- a/recipes/bioconductor-dyebias/meta.yaml +++ b/recipes/bioconductor-dyebias/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2f434cc8b244800f94d4301d29ae1b25 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dyebiasexamples/meta.yaml b/recipes/bioconductor-dyebiasexamples/meta.yaml index e64f6a6c0315c..ec2caa326c9ff 100644 --- a/recipes/bioconductor-dyebiasexamples/meta.yaml +++ b/recipes/bioconductor-dyebiasexamples/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5b5ecedcc8fc4ec91f6180788357b69a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-dyebiasexamples/post-link.sh b/recipes/bioconductor-dyebiasexamples/post-link.sh index 6dae841167b44..2fb4294bfbdcf 100644 --- a/recipes/bioconductor-dyebiasexamples/post-link.sh +++ b/recipes/bioconductor-dyebiasexamples/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/dyebiasexamples_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/dyebiasexamples_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-dyebiasexamples/bioconductor-dyebiasexamples_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-dyebiasexamples/bioconductor-dyebiasexamples_1.24.0_src_all.tar.gz" ) MD5="5b5ecedcc8fc4ec91f6180788357b69a" diff --git a/recipes/bioconductor-dyndoc/meta.yaml b/recipes/bioconductor-dyndoc/meta.yaml index aefa92b1fff21..9555f4b6b3e5c 100644 --- a/recipes/bioconductor-dyndoc/meta.yaml +++ b/recipes/bioconductor-dyndoc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3e9372cbe7a1d407f48e62f87e984c1b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-easyqpcr/meta.yaml b/recipes/bioconductor-easyqpcr/meta.yaml index 020e609fc67b9..4cd9ccaf8c854 100644 --- a/recipes/bioconductor-easyqpcr/meta.yaml +++ b/recipes/bioconductor-easyqpcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1bfda9188d2d66721b5035c0bd4bd46 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-easyrnaseq/meta.yaml b/recipes/bioconductor-easyrnaseq/meta.yaml index a3db0f4992f8d..b018498437589 100644 --- a/recipes/bioconductor-easyrnaseq/meta.yaml +++ b/recipes/bioconductor-easyrnaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7db78c0f10e0bac811550c80ae29c372 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-eatonetalchipseq/meta.yaml b/recipes/bioconductor-eatonetalchipseq/meta.yaml index 316be9d5549d2..aad9089e9f9d5 100644 --- a/recipes/bioconductor-eatonetalchipseq/meta.yaml +++ b/recipes/bioconductor-eatonetalchipseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e6375a109bfe89cab8a89d343dd1105c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-eatonetalchipseq/post-link.sh b/recipes/bioconductor-eatonetalchipseq/post-link.sh index 8a472f1a0cd8b..bf5a9977e2892 100644 --- a/recipes/bioconductor-eatonetalchipseq/post-link.sh +++ b/recipes/bioconductor-eatonetalchipseq/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/EatonEtAlChIPseq_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/EatonEtAlChIPseq_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-eatonetalchipseq/bioconductor-eatonetalchipseq_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-eatonetalchipseq/bioconductor-eatonetalchipseq_0.22.0_src_all.tar.gz" ) MD5="e6375a109bfe89cab8a89d343dd1105c" diff --git a/recipes/bioconductor-ebarrays/meta.yaml b/recipes/bioconductor-ebarrays/meta.yaml index 66d05ad0b9a36..11497c456f88e 100644 --- a/recipes/bioconductor-ebarrays/meta.yaml +++ b/recipes/bioconductor-ebarrays/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 608cdd3e7a7efa9de797cc7cd8076e2a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ebcoexpress/meta.yaml b/recipes/bioconductor-ebcoexpress/meta.yaml index 609feb65cc644..2e785bd1f180e 100644 --- a/recipes/bioconductor-ebcoexpress/meta.yaml +++ b/recipes/bioconductor-ebcoexpress/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9a21fccfdac28510fb2cf51bae19638d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ebimage/meta.yaml b/recipes/bioconductor-ebimage/meta.yaml index 4749cdc43f160..a3181e64ec969 100644 --- a/recipes/bioconductor-ebimage/meta.yaml +++ b/recipes/bioconductor-ebimage/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 098cfb9ab5b7d4f10ad9cbba2bf6a3cb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ebsea/meta.yaml b/recipes/bioconductor-ebsea/meta.yaml index 4293e5bf2c707..2c857c7607f41 100644 --- a/recipes/bioconductor-ebsea/meta.yaml +++ b/recipes/bioconductor-ebsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd19e2b5af8e9eb07c0991802c63068c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ebseq/meta.yaml b/recipes/bioconductor-ebseq/meta.yaml index fb9fec7e5bbe1..bbc44d47727d1 100644 --- a/recipes/bioconductor-ebseq/meta.yaml +++ b/recipes/bioconductor-ebseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: becd6c60c5358cfc63ca19c6ce33f87c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ebseqhmm/meta.yaml b/recipes/bioconductor-ebseqhmm/meta.yaml index fe6b25a5892fa..6ab1425b9303a 100644 --- a/recipes/bioconductor-ebseqhmm/meta.yaml +++ b/recipes/bioconductor-ebseqhmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8f2f866cd05535d159b93b39e59c7ce5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecoli2.db/meta.yaml b/recipes/bioconductor-ecoli2.db/meta.yaml index 29cecdbe06170..27a0e4b95f270 100644 --- a/recipes/bioconductor-ecoli2.db/meta.yaml +++ b/recipes/bioconductor-ecoli2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1fe0877a59b63453df6667944818e66b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecoli2cdf/meta.yaml b/recipes/bioconductor-ecoli2cdf/meta.yaml index 8b4fcf096d302..437c897696f0c 100644 --- a/recipes/bioconductor-ecoli2cdf/meta.yaml +++ b/recipes/bioconductor-ecoli2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b5cd1f05322ce494132ff649de9806c6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecoli2probe/meta.yaml b/recipes/bioconductor-ecoli2probe/meta.yaml index 95790da04ae14..2f10f1f944d8f 100644 --- a/recipes/bioconductor-ecoli2probe/meta.yaml +++ b/recipes/bioconductor-ecoli2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 061fcb782ee9da3aa5108881677a4531 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecoliasv2cdf/meta.yaml b/recipes/bioconductor-ecoliasv2cdf/meta.yaml index 526e9cb242742..2ccade9cf4d69 100644 --- a/recipes/bioconductor-ecoliasv2cdf/meta.yaml +++ b/recipes/bioconductor-ecoliasv2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d7771ca1648b26a6af5bfb7582c6c778 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecoliasv2probe/meta.yaml b/recipes/bioconductor-ecoliasv2probe/meta.yaml index 7dfeaf7c6979b..c640c0dc69a36 100644 --- a/recipes/bioconductor-ecoliasv2probe/meta.yaml +++ b/recipes/bioconductor-ecoliasv2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b3e4332266184576279c3a478f286dc9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecolicdf/meta.yaml b/recipes/bioconductor-ecolicdf/meta.yaml index 52306807dd872..497d3244c9fe5 100644 --- a/recipes/bioconductor-ecolicdf/meta.yaml +++ b/recipes/bioconductor-ecolicdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4e664c1ac41a8ab68ef22f8a889b916c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecolik12.db0/meta.yaml b/recipes/bioconductor-ecolik12.db0/meta.yaml index b0b7958638438..612c63d77667d 100644 --- a/recipes/bioconductor-ecolik12.db0/meta.yaml +++ b/recipes/bioconductor-ecolik12.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 98364b33380367953ef27050c72d8d5c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecolik12.db0/post-link.sh b/recipes/bioconductor-ecolik12.db0/post-link.sh index c141677f9fccd..1dc77ac067b7b 100644 --- a/recipes/bioconductor-ecolik12.db0/post-link.sh +++ b/recipes/bioconductor-ecolik12.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/ecoliK12.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/ecoliK12.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ecolik12.db0/bioconductor-ecolik12.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ecolik12.db0/bioconductor-ecolik12.db0_3.8.2_src_all.tar.gz" ) MD5="98364b33380367953ef27050c72d8d5c" diff --git a/recipes/bioconductor-ecolileucine/meta.yaml b/recipes/bioconductor-ecolileucine/meta.yaml index edfedc58d56ab..fbfe4d2019fbc 100644 --- a/recipes/bioconductor-ecolileucine/meta.yaml +++ b/recipes/bioconductor-ecolileucine/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6b94fceec7ba510c24754b9fcd8c6ac5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecolileucine/post-link.sh b/recipes/bioconductor-ecolileucine/post-link.sh index 89bbec308929d..7dc20ce72ee7b 100644 --- a/recipes/bioconductor-ecolileucine/post-link.sh +++ b/recipes/bioconductor-ecolileucine/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ecoliLeucine_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/ecoliLeucine_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ecolileucine/bioconductor-ecolileucine_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ecolileucine/bioconductor-ecolileucine_1.24.0_src_all.tar.gz" ) MD5="6b94fceec7ba510c24754b9fcd8c6ac5" diff --git a/recipes/bioconductor-ecoliprobe/meta.yaml b/recipes/bioconductor-ecoliprobe/meta.yaml index 27027c02cfaf6..3cdc874d82f5f 100644 --- a/recipes/bioconductor-ecoliprobe/meta.yaml +++ b/recipes/bioconductor-ecoliprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 09586f9907bdbc43ba5ea4ce07c1f756 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecolisakai.db0/meta.yaml b/recipes/bioconductor-ecolisakai.db0/meta.yaml index 71607d80578b7..744e2d7db6f33 100644 --- a/recipes/bioconductor-ecolisakai.db0/meta.yaml +++ b/recipes/bioconductor-ecolisakai.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5307f40dff484dfd8427111bfc8312ce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ecolisakai.db0/post-link.sh b/recipes/bioconductor-ecolisakai.db0/post-link.sh index c0ddd373b7700..20bc5ee459689 100644 --- a/recipes/bioconductor-ecolisakai.db0/post-link.sh +++ b/recipes/bioconductor-ecolisakai.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/ecoliSakai.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/ecoliSakai.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ecolisakai.db0/bioconductor-ecolisakai.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ecolisakai.db0/bioconductor-ecolisakai.db0_3.8.2_src_all.tar.gz" ) MD5="5307f40dff484dfd8427111bfc8312ce" diff --git a/recipes/bioconductor-ecolitk/meta.yaml b/recipes/bioconductor-ecolitk/meta.yaml index 30e3247b9605d..697e519067646 100644 --- a/recipes/bioconductor-ecolitk/meta.yaml +++ b/recipes/bioconductor-ecolitk/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d7eeb11fad631ce3934581f5f7606aeb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-edaseq/meta.yaml b/recipes/bioconductor-edaseq/meta.yaml index 1850a8e9b59af..0f2e8e74504bd 100644 --- a/recipes/bioconductor-edaseq/meta.yaml +++ b/recipes/bioconductor-edaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 478a1ed2c78ff2d606de4fae097f6776 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-edda/meta.yaml b/recipes/bioconductor-edda/meta.yaml index 90d27432d1fec..98af1d468488f 100644 --- a/recipes/bioconductor-edda/meta.yaml +++ b/recipes/bioconductor-edda/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 644dc53ad78a4e34f618d4f76ef7a04f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-edge/meta.yaml b/recipes/bioconductor-edge/meta.yaml index 2adae5a4dd713..191eb76763b27 100644 --- a/recipes/bioconductor-edge/meta.yaml +++ b/recipes/bioconductor-edge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 48cb021c6bd3677e96f44d419ef4382f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-edger/meta.yaml b/recipes/bioconductor-edger/meta.yaml index fddd47238e48d..ee1ecf7437e4f 100644 --- a/recipes/bioconductor-edger/meta.yaml +++ b/recipes/bioconductor-edger/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "3.26.0" %} +{% set version = "3.26.5" %} {% set name = "edgeR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 52bd63ccc21c97aee7334aabc64e0fec + md5: 35f98c97430e9e3b1eabb625d7c969f2 build: number: 0 rpaths: diff --git a/recipes/bioconductor-eegc/meta.yaml b/recipes/bioconductor-eegc/meta.yaml index 9565642947682..a32de236ba0ea 100644 --- a/recipes/bioconductor-eegc/meta.yaml +++ b/recipes/bioconductor-eegc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b05f2f7a3f6e39f65f1deea5ee9e874d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-egad/meta.yaml b/recipes/bioconductor-egad/meta.yaml index 593b103955d0e..be7785df04761 100644 --- a/recipes/bioconductor-egad/meta.yaml +++ b/recipes/bioconductor-egad/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 51baa1af3e40ef6ac8b84484d61c8091 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-egsea/meta.yaml b/recipes/bioconductor-egsea/meta.yaml index ff4e1473c6f39..6e1ddfc9425c3 100644 --- a/recipes/bioconductor-egsea/meta.yaml +++ b/recipes/bioconductor-egsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 74eecf4e7b394954f7616a2fe86d926e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-egseadata/meta.yaml b/recipes/bioconductor-egseadata/meta.yaml index a7bdf3b4374ff..575adfa5e5bc5 100644 --- a/recipes/bioconductor-egseadata/meta.yaml +++ b/recipes/bioconductor-egseadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 66cb1885c1cc1a378884e34c41ef2e25 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-egseadata/post-link.sh b/recipes/bioconductor-egseadata/post-link.sh index 2eb77657e1991..cb3dd1184e70b 100644 --- a/recipes/bioconductor-egseadata/post-link.sh +++ b/recipes/bioconductor-egseadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/EGSEAdata_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/EGSEAdata_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-egseadata/bioconductor-egseadata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-egseadata/bioconductor-egseadata_1.12.0_src_all.tar.gz" ) MD5="66cb1885c1cc1a378884e34c41ef2e25" diff --git a/recipes/bioconductor-eir/meta.yaml b/recipes/bioconductor-eir/meta.yaml index 32ed96b75ec03..3490b865352f9 100644 --- a/recipes/bioconductor-eir/meta.yaml +++ b/recipes/bioconductor-eir/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aa753e91c09aeb6f53c66957e36d7d99 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-eisa/meta.yaml b/recipes/bioconductor-eisa/meta.yaml index 4491d05b19c60..40a261272395d 100644 --- a/recipes/bioconductor-eisa/meta.yaml +++ b/recipes/bioconductor-eisa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cf034edc59e97a5ba8fd5322bc36c876 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-elbow/meta.yaml b/recipes/bioconductor-elbow/meta.yaml index 4fef861d88289..8ec768568be67 100644 --- a/recipes/bioconductor-elbow/meta.yaml +++ b/recipes/bioconductor-elbow/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a7f6650044af31c238c8d98c0d56e437 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-elmer.data/meta.yaml b/recipes/bioconductor-elmer.data/meta.yaml index 8aa4ad82049b1..7d0b073e1cebd 100644 --- a/recipes/bioconductor-elmer.data/meta.yaml +++ b/recipes/bioconductor-elmer.data/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 11271a22a29147bc8f11c3039399d191 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-elmer.data/post-link.sh b/recipes/bioconductor-elmer.data/post-link.sh index 0381f1727d66f..e2d6667e303ad 100644 --- a/recipes/bioconductor-elmer.data/post-link.sh +++ b/recipes/bioconductor-elmer.data/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ELMER.data_2.8.0.tar.gz" "https://bioarchive.galaxyproject.org/ELMER.data_2.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-elmer.data/bioconductor-elmer.data_2.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-elmer.data/bioconductor-elmer.data_2.8.0_src_all.tar.gz" ) MD5="11271a22a29147bc8f11c3039399d191" diff --git a/recipes/bioconductor-elmer/meta.yaml b/recipes/bioconductor-elmer/meta.yaml index 8623e90635f44..d3a0de5391d22 100644 --- a/recipes/bioconductor-elmer/meta.yaml +++ b/recipes/bioconductor-elmer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 98495928178bb60dd260ca5317b0ddb3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-emdomics/meta.yaml b/recipes/bioconductor-emdomics/meta.yaml index 80c75a1b980fe..0985e08426623 100644 --- a/recipes/bioconductor-emdomics/meta.yaml +++ b/recipes/bioconductor-emdomics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: baabbdfdbaf4306ac2d89804857133a0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-empiricalbrownsmethod/meta.yaml b/recipes/bioconductor-empiricalbrownsmethod/meta.yaml index 2e888f708a37e..c807abca0aa65 100644 --- a/recipes/bioconductor-empiricalbrownsmethod/meta.yaml +++ b/recipes/bioconductor-empiricalbrownsmethod/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e4b0403a9ba17adcf61cba37e292cf0f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-encodexplorer/meta.yaml b/recipes/bioconductor-encodexplorer/meta.yaml index 839817d66cc96..c06f8a2ef1822 100644 --- a/recipes/bioconductor-encodexplorer/meta.yaml +++ b/recipes/bioconductor-encodexplorer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cfc6d5a72878ec794ac0be88938cedfa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-encodexplorerdata/meta.yaml b/recipes/bioconductor-encodexplorerdata/meta.yaml index 4ac9f186921fc..19acde88c4175 100644 --- a/recipes/bioconductor-encodexplorerdata/meta.yaml +++ b/recipes/bioconductor-encodexplorerdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 61788c5c9d248ce4b4488b0be98ea879 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-encodexplorerdata/post-link.sh b/recipes/bioconductor-encodexplorerdata/post-link.sh index 0bf77c5224f3e..f288ae994e64f 100644 --- a/recipes/bioconductor-encodexplorerdata/post-link.sh +++ b/recipes/bioconductor-encodexplorerdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/ENCODExplorerData_0.99.1.tar.gz" "https://bioarchive.galaxyproject.org/ENCODExplorerData_0.99.1.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-encodexplorerdata/bioconductor-encodexplorerdata_0.99.1_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-encodexplorerdata/bioconductor-encodexplorerdata_0.99.1_src_all.tar.gz" ) MD5="61788c5c9d248ce4b4488b0be98ea879" diff --git a/recipes/bioconductor-enhancedvolcano/meta.yaml b/recipes/bioconductor-enhancedvolcano/meta.yaml index f21ecdd513878..007a3c08da522 100644 --- a/recipes/bioconductor-enhancedvolcano/meta.yaml +++ b/recipes/bioconductor-enhancedvolcano/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e07947292645c861e847cab9fcf60f84 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-enmix/meta.yaml b/recipes/bioconductor-enmix/meta.yaml index 5045b00bb8352..5cdd5a7d34857 100644 --- a/recipes/bioconductor-enmix/meta.yaml +++ b/recipes/bioconductor-enmix/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.20.0" %} +{% set version = "1.20.3" %} {% set name = "ENmix" %} {% set bioc = "3.9" %} @@ -10,19 +10,19 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 0cbb33604739295704994fda97f10698 + md5: bae1cbdd3358f9f739451265f632c28d build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: minfiData (>= 0.4.1), RPMM, RUnit, BiocGenerics +# Suggests: minfi, minfiData, RPMM, RUnit, BiocGenerics,genefilter,gplots,quadprog, dynamicTreeCut,flashClust,sqldf requirements: host: - 'bioconductor-geneplotter >=1.62.0,<1.63.0' + - 'bioconductor-illuminaio >=0.26.0,<0.27.0' - 'bioconductor-impute >=1.58.0,<1.59.0' - - 'bioconductor-minfi >=1.30.0,<1.31.0' - 'bioconductor-preprocesscore >=1.46.0,<1.47.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-sva >=3.32.0,<3.33.0' @@ -30,11 +30,11 @@ requirements: - r-base - r-doparallel - r-foreach - - r-mass + - r-matrixstats run: - 'bioconductor-geneplotter >=1.62.0,<1.63.0' + - 'bioconductor-illuminaio >=0.26.0,<0.27.0' - 'bioconductor-impute >=1.58.0,<1.59.0' - - 'bioconductor-minfi >=1.30.0,<1.31.0' - 'bioconductor-preprocesscore >=1.46.0,<1.47.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-sva >=3.32.0,<3.33.0' @@ -42,7 +42,7 @@ requirements: - r-base - r-doparallel - r-foreach - - r-mass + - r-matrixstats test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-enrichedheatmap/meta.yaml b/recipes/bioconductor-enrichedheatmap/meta.yaml index 31e945be93ff1..e53fb251a58f6 100644 --- a/recipes/bioconductor-enrichedheatmap/meta.yaml +++ b/recipes/bioconductor-enrichedheatmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 354f237782eaf57e6c3ace742398e126 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-enrichmentbrowser/meta.yaml b/recipes/bioconductor-enrichmentbrowser/meta.yaml index 9d2b0e809549f..1c60a88789637 100644 --- a/recipes/bioconductor-enrichmentbrowser/meta.yaml +++ b/recipes/bioconductor-enrichmentbrowser/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.14.0" %} +{% set version = "2.14.3" %} {% set name = "EnrichmentBrowser" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 39f8abc6a8734944c73965b43fb91195 + md5: 6e8169ad80ef917ddea224de05360caa build: number: 0 rpaths: diff --git a/recipes/bioconductor-enrichplot/meta.yaml b/recipes/bioconductor-enrichplot/meta.yaml index b5cda3b7b324e..e0eee016fe436 100644 --- a/recipes/bioconductor-enrichplot/meta.yaml +++ b/recipes/bioconductor-enrichplot/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3842cd6f24eede4adb94dad3374f50a1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-enrichtf/meta.yaml b/recipes/bioconductor-enrichtf/meta.yaml index aa3e95202db20..fd013d0a9ad4a 100644 --- a/recipes/bioconductor-enrichtf/meta.yaml +++ b/recipes/bioconductor-enrichtf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6d32698632dc4bd6b099d48325581b09 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -25,7 +25,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-jaspar2018 >=1.2.0,<1.3.0' + - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0' - 'bioconductor-motifmatchr >=1.6.0,<1.7.0' - 'bioconductor-pipeframe >=1.0.0,<1.1.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' @@ -39,7 +39,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-jaspar2018 >=1.2.0,<1.3.0' + - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0' - 'bioconductor-motifmatchr >=1.6.0,<1.7.0' - 'bioconductor-pipeframe >=1.0.0,<1.1.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' diff --git a/recipes/bioconductor-ensdb.hsapiens.v75/meta.yaml b/recipes/bioconductor-ensdb.hsapiens.v75/meta.yaml index 67f2130633f31..663fc81806956 100644 --- a/recipes/bioconductor-ensdb.hsapiens.v75/meta.yaml +++ b/recipes/bioconductor-ensdb.hsapiens.v75/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6c896475252903972bfc6c0eb0d8f334 build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ensdb.hsapiens.v79/meta.yaml b/recipes/bioconductor-ensdb.hsapiens.v79/meta.yaml index 8c6d0b7afb1ff..b711c830d319a 100644 --- a/recipes/bioconductor-ensdb.hsapiens.v79/meta.yaml +++ b/recipes/bioconductor-ensdb.hsapiens.v79/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 16b5629805c07649b2aa501d34fcc588 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ensdb.hsapiens.v86/meta.yaml b/recipes/bioconductor-ensdb.hsapiens.v86/meta.yaml index fa797e63afed7..0b28c69844b05 100644 --- a/recipes/bioconductor-ensdb.hsapiens.v86/meta.yaml +++ b/recipes/bioconductor-ensdb.hsapiens.v86/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0c9e52512ff6dbbbdb754c4d41149939 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ensdb.mmusculus.v75/meta.yaml b/recipes/bioconductor-ensdb.mmusculus.v75/meta.yaml index 624533cef53ec..2971f36a0a029 100644 --- a/recipes/bioconductor-ensdb.mmusculus.v75/meta.yaml +++ b/recipes/bioconductor-ensdb.mmusculus.v75/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 081bf6f90ff77031b634b4fe32e00be8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ensdb.mmusculus.v79/meta.yaml b/recipes/bioconductor-ensdb.mmusculus.v79/meta.yaml index 3cc254504adf7..95b507b3c5d49 100644 --- a/recipes/bioconductor-ensdb.mmusculus.v79/meta.yaml +++ b/recipes/bioconductor-ensdb.mmusculus.v79/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 28bbab743b0d2d550dbfa0bcd3274fad build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ensdb.rnorvegicus.v75/meta.yaml b/recipes/bioconductor-ensdb.rnorvegicus.v75/meta.yaml index f85dac116c7ee..1a53537d89bb7 100644 --- a/recipes/bioconductor-ensdb.rnorvegicus.v75/meta.yaml +++ b/recipes/bioconductor-ensdb.rnorvegicus.v75/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 40ff53b41aa6fad0d5bd15f9c6f3bad8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ensdb.rnorvegicus.v79/meta.yaml b/recipes/bioconductor-ensdb.rnorvegicus.v79/meta.yaml index 7b025aee97698..2ae6a4eb288be 100644 --- a/recipes/bioconductor-ensdb.rnorvegicus.v79/meta.yaml +++ b/recipes/bioconductor-ensdb.rnorvegicus.v79/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d305bd0d1a073bd8c60063ae210a7a9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ensembldb/meta.yaml b/recipes/bioconductor-ensembldb/meta.yaml index a63321bd06b09..8210ac6b8f16a 100644 --- a/recipes/bioconductor-ensembldb/meta.yaml +++ b/recipes/bioconductor-ensembldb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 147470cfa8481113890772fffaad3153 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ensemblvep/meta.yaml b/recipes/bioconductor-ensemblvep/meta.yaml index 910c301655444..b65372f05786a 100644 --- a/recipes/bioconductor-ensemblvep/meta.yaml +++ b/recipes/bioconductor-ensemblvep/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eaead079b2b775cc2cb532b895186c34 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -29,9 +29,6 @@ requirements: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' - r-base - - ensembl-vep - - perl-dbi - - perl-dbd-mysql run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-biostrings >=2.52.0,<2.53.0' @@ -41,9 +38,6 @@ requirements: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' - r-base - - ensembl-vep - - perl-dbi - - perl-dbd-mysql test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-envisionquery/meta.yaml b/recipes/bioconductor-envisionquery/meta.yaml index 48e40c79822e9..fb390da1a7414 100644 --- a/recipes/bioconductor-envisionquery/meta.yaml +++ b/recipes/bioconductor-envisionquery/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8e08095cda9c1a95d101e7568cf49d34 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epidish/meta.yaml b/recipes/bioconductor-epidish/meta.yaml index 4685372a0d471..2eb6351272b36 100644 --- a/recipes/bioconductor-epidish/meta.yaml +++ b/recipes/bioconductor-epidish/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0924ada71c8694d640b3181de1bfc7e5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epigenomix/meta.yaml b/recipes/bioconductor-epigenomix/meta.yaml index 6e6e44ed26d1a..b1108443bb298 100644 --- a/recipes/bioconductor-epigenomix/meta.yaml +++ b/recipes/bioconductor-epigenomix/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 25ef016294642eea92f5861defac13f5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epihet/meta.yaml b/recipes/bioconductor-epihet/meta.yaml index eb2da2c3236c0..c91ae67a6a7df 100644 --- a/recipes/bioconductor-epihet/meta.yaml +++ b/recipes/bioconductor-epihet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c06c440713eb659c25de200098c28c1c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epinem/meta.yaml b/recipes/bioconductor-epinem/meta.yaml index a3a7f3cf33c92..0aca65dc035d3 100644 --- a/recipes/bioconductor-epinem/meta.yaml +++ b/recipes/bioconductor-epinem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 76377c06686a8e5e8300c0c983923261 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epivizr/meta.yaml b/recipes/bioconductor-epivizr/meta.yaml index 50674c61243b5..ee9d30a76840a 100644 --- a/recipes/bioconductor-epivizr/meta.yaml +++ b/recipes/bioconductor-epivizr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e8327fa8707402547bf84be7693df002 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epivizrchart/meta.yaml b/recipes/bioconductor-epivizrchart/meta.yaml index 159650d7af414..c77f62265ece3 100644 --- a/recipes/bioconductor-epivizrchart/meta.yaml +++ b/recipes/bioconductor-epivizrchart/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 67b9da7932bddf6246b6b86f84e153b1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epivizrdata/meta.yaml b/recipes/bioconductor-epivizrdata/meta.yaml index 56d2c83aa8db5..545c9b30dab63 100644 --- a/recipes/bioconductor-epivizrdata/meta.yaml +++ b/recipes/bioconductor-epivizrdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2f11801b5495e63deab2497ed1b92286 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epivizrserver/meta.yaml b/recipes/bioconductor-epivizrserver/meta.yaml index 4b82718c018c7..73160977719ab 100644 --- a/recipes/bioconductor-epivizrserver/meta.yaml +++ b/recipes/bioconductor-epivizrserver/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1ebe50b859db578f50ff6068288efd38 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-epivizrstandalone/meta.yaml b/recipes/bioconductor-epivizrstandalone/meta.yaml index b24c7637053f2..a141eba8a8f27 100644 --- a/recipes/bioconductor-epivizrstandalone/meta.yaml +++ b/recipes/bioconductor-epivizrstandalone/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cab65c8a4b24d30beb55a608d6fbdc62 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-erccdashboard/meta.yaml b/recipes/bioconductor-erccdashboard/meta.yaml index a93dbc1238a15..122e814515cc0 100644 --- a/recipes/bioconductor-erccdashboard/meta.yaml +++ b/recipes/bioconductor-erccdashboard/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1032ec195ee26ce0239d120c955a83f9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-erma/meta.yaml b/recipes/bioconductor-erma/meta.yaml index 39820c8dfc627..8778a4dca0f3b 100644 --- a/recipes/bioconductor-erma/meta.yaml +++ b/recipes/bioconductor-erma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b42e8f00156c28d2698ba16c5585b758 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,7 +27,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicfiles >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' @@ -43,7 +43,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicfiles >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' diff --git a/recipes/bioconductor-erssa/meta.yaml b/recipes/bioconductor-erssa/meta.yaml index b5da311975fdb..7be486e37dcf8 100644 --- a/recipes/bioconductor-erssa/meta.yaml +++ b/recipes/bioconductor-erssa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 96c579e7c9d1351f8c6dc94e2c3bb38c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-esatac/meta.yaml b/recipes/bioconductor-esatac/meta.yaml index c72176ea0d2dd..31999ffc7bfac 100644 --- a/recipes/bioconductor-esatac/meta.yaml +++ b/recipes/bioconductor-esatac/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.6.0" %} +{% set version = "1.6.1" %} {% set name = "esATAC" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 2099b8e6a287346bd8bff922615fe429 + md5: ae20e0a977233e9604c01f0b1a634932 build: number: 0 rpaths: diff --git a/recipes/bioconductor-esetvis/meta.yaml b/recipes/bioconductor-esetvis/meta.yaml index 3898789d95776..3d6eb90d422d4 100644 --- a/recipes/bioconductor-esetvis/meta.yaml +++ b/recipes/bioconductor-esetvis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0d9a30c4788017d0dd9aa162ce949901 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-estrogen/meta.yaml b/recipes/bioconductor-estrogen/meta.yaml index 933690dbbdb52..a91b3648ac179 100644 --- a/recipes/bioconductor-estrogen/meta.yaml +++ b/recipes/bioconductor-estrogen/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fe5ddaafa6641e710a5cf76fb47a9989 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-estrogen/post-link.sh b/recipes/bioconductor-estrogen/post-link.sh index b46a677b4d812..ff6da9f4e0ea0 100644 --- a/recipes/bioconductor-estrogen/post-link.sh +++ b/recipes/bioconductor-estrogen/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/estrogen_1.30.0.tar.gz" "https://bioarchive.galaxyproject.org/estrogen_1.30.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-estrogen/bioconductor-estrogen_1.30.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-estrogen/bioconductor-estrogen_1.30.0_src_all.tar.gz" ) MD5="fe5ddaafa6641e710a5cf76fb47a9989" diff --git a/recipes/bioconductor-etec16s/meta.yaml b/recipes/bioconductor-etec16s/meta.yaml index 8ef898e0ee024..4b533b7109717 100644 --- a/recipes/bioconductor-etec16s/meta.yaml +++ b/recipes/bioconductor-etec16s/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d59c6663c4df8f745e0b326cb712137b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-etec16s/post-link.sh b/recipes/bioconductor-etec16s/post-link.sh index c1d2569af1e83..8af8f410f580c 100644 --- a/recipes/bioconductor-etec16s/post-link.sh +++ b/recipes/bioconductor-etec16s/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/etec16s_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/etec16s_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-etec16s/bioconductor-etec16s_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-etec16s/bioconductor-etec16s_1.12.0_src_all.tar.gz" ) MD5="d59c6663c4df8f745e0b326cb712137b" diff --git a/recipes/bioconductor-eudysbiome/meta.yaml b/recipes/bioconductor-eudysbiome/meta.yaml index 03f1839a8ca84..9795853dcca90 100644 --- a/recipes/bioconductor-eudysbiome/meta.yaml +++ b/recipes/bioconductor-eudysbiome/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 047a92ad163d17b14f550850e37eb0e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-eupathdb/meta.yaml b/recipes/bioconductor-eupathdb/meta.yaml index a673524688354..37c81d91c62b8 100644 --- a/recipes/bioconductor-eupathdb/meta.yaml +++ b/recipes/bioconductor-eupathdb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1451c3ab6c224d9a4cfbdf27dc5c2680 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-evaluomer/meta.yaml b/recipes/bioconductor-evaluomer/meta.yaml index 86c3ec5cc17ed..0b6bf89d3f4cc 100644 --- a/recipes/bioconductor-evaluomer/meta.yaml +++ b/recipes/bioconductor-evaluomer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 06a1b1383ff3000956f41296b02850cb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-eventpointer/meta.yaml b/recipes/bioconductor-eventpointer/meta.yaml index cceb8e1d1c44b..57e43dd299eba 100644 --- a/recipes/bioconductor-eventpointer/meta.yaml +++ b/recipes/bioconductor-eventpointer/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.2.0" %} +{% set version = "2.2.4" %} {% set name = "EventPointer" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 390e6ac5a06cc6d500f4c6796fb65ae5 + md5: afdedb4d78043df647149eab0cba0a3e build: number: 0 rpaths: diff --git a/recipes/bioconductor-excluster/meta.yaml b/recipes/bioconductor-excluster/meta.yaml index 7ff16da1ec6f6..2c40311cbbd64 100644 --- a/recipes/bioconductor-excluster/meta.yaml +++ b/recipes/bioconductor-excluster/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5028118a73918c8857db5fd7e96db56f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-eximir/meta.yaml b/recipes/bioconductor-eximir/meta.yaml index 929fb0d9670a1..7051fbd0e3e49 100644 --- a/recipes/bioconductor-eximir/meta.yaml +++ b/recipes/bioconductor-eximir/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4dd952a0c5f77f86265721357dc47d1f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-exomecopy/meta.yaml b/recipes/bioconductor-exomecopy/meta.yaml index 3527b70d63fdc..804c793c06cfa 100644 --- a/recipes/bioconductor-exomecopy/meta.yaml +++ b/recipes/bioconductor-exomecopy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e68955655de5d7df8b919f6b029b3be0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-exomepeak/meta.yaml b/recipes/bioconductor-exomepeak/meta.yaml index 5dcb566f6fac0..b98a3a026ab4c 100644 --- a/recipes/bioconductor-exomepeak/meta.yaml +++ b/recipes/bioconductor-exomepeak/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3456fc99d03482a26b4cd24a3333f7eb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-experimenthub/meta.yaml b/recipes/bioconductor-experimenthub/meta.yaml index de3266420a65a..6236f154e3bfb 100644 --- a/recipes/bioconductor-experimenthub/meta.yaml +++ b/recipes/bioconductor-experimenthub/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: de16efc050b3675e822fbd241b1068c3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-experimenthubdata/meta.yaml b/recipes/bioconductor-experimenthubdata/meta.yaml index 0d4be4c84a269..b7ed38de32910 100644 --- a/recipes/bioconductor-experimenthubdata/meta.yaml +++ b/recipes/bioconductor-experimenthubdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a7707d43fbbd0db88936ba6a99a53400 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-explorase/meta.yaml b/recipes/bioconductor-explorase/meta.yaml index 3aa89e251e4b2..01046fe08d0d7 100644 --- a/recipes/bioconductor-explorase/meta.yaml +++ b/recipes/bioconductor-explorase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 21248c0c7488ee0bf6077ccb03290d0c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-expressionatlas/meta.yaml b/recipes/bioconductor-expressionatlas/meta.yaml index 79beb2a130935..e0a63d3790c51 100644 --- a/recipes/bioconductor-expressionatlas/meta.yaml +++ b/recipes/bioconductor-expressionatlas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a14c5b3cbe7c1c11e6f7b12290762eae build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-expressionview/meta.yaml b/recipes/bioconductor-expressionview/meta.yaml index df50bade65aaa..65266d229fa0c 100644 --- a/recipes/bioconductor-expressionview/meta.yaml +++ b/recipes/bioconductor-expressionview/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 42823dd1a231c96c1c8484403e95b652 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-faahko/meta.yaml b/recipes/bioconductor-faahko/meta.yaml index 72b5e315b0998..eba7f45ceccbf 100644 --- a/recipes/bioconductor-faahko/meta.yaml +++ b/recipes/bioconductor-faahko/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c2d5a234c32448986696671867e5fbca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-faahko/post-link.sh b/recipes/bioconductor-faahko/post-link.sh index 5275e4a2f275a..b6dd93545c179 100644 --- a/recipes/bioconductor-faahko/post-link.sh +++ b/recipes/bioconductor-faahko/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/faahKO_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/faahKO_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-faahko/bioconductor-faahko_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-faahko/bioconductor-faahko_1.24.0_src_all.tar.gz" ) MD5="c2d5a234c32448986696671867e5fbca" diff --git a/recipes/bioconductor-fabia/meta.yaml b/recipes/bioconductor-fabia/meta.yaml index b0139a23226f7..8013861d5d624 100644 --- a/recipes/bioconductor-fabia/meta.yaml +++ b/recipes/bioconductor-fabia/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6c36dc1231f55f6469d11f4b76a49acc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fabiadata/meta.yaml b/recipes/bioconductor-fabiadata/meta.yaml index de3dcc6bff1c2..f10c5a590d8fd 100644 --- a/recipes/bioconductor-fabiadata/meta.yaml +++ b/recipes/bioconductor-fabiadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ebba780603b8886835107e4653c27d6d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fabiadata/post-link.sh b/recipes/bioconductor-fabiadata/post-link.sh index 3fb4c6acd84e1..972edd206733c 100644 --- a/recipes/bioconductor-fabiadata/post-link.sh +++ b/recipes/bioconductor-fabiadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/fabiaData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/fabiaData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-fabiadata/bioconductor-fabiadata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-fabiadata/bioconductor-fabiadata_1.22.0_src_all.tar.gz" ) MD5="ebba780603b8886835107e4653c27d6d" diff --git a/recipes/bioconductor-facopy.annot/meta.yaml b/recipes/bioconductor-facopy.annot/meta.yaml index 0691d37df5f3f..6fb7eca7bb6f4 100644 --- a/recipes/bioconductor-facopy.annot/meta.yaml +++ b/recipes/bioconductor-facopy.annot/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5a332eb0a856a4bd83e8d6e2236fabc4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-facopy.annot/post-link.sh b/recipes/bioconductor-facopy.annot/post-link.sh index b3859560a5c7a..50a6462982b63 100644 --- a/recipes/bioconductor-facopy.annot/post-link.sh +++ b/recipes/bioconductor-facopy.annot/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/facopy.annot_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/facopy.annot_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-facopy.annot/bioconductor-facopy.annot_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-facopy.annot/bioconductor-facopy.annot_1.4.0_src_all.tar.gz" ) MD5="5a332eb0a856a4bd83e8d6e2236fabc4" diff --git a/recipes/bioconductor-facsdorit/meta.yaml b/recipes/bioconductor-facsdorit/meta.yaml index 44c49d5007ab6..684209aaf69ae 100644 --- a/recipes/bioconductor-facsdorit/meta.yaml +++ b/recipes/bioconductor-facsdorit/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dcf6e4b99ee9e013e30ebd0f8ec678d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-facsdorit/post-link.sh b/recipes/bioconductor-facsdorit/post-link.sh index 6a670721d56bb..ef8da3b8a536a 100644 --- a/recipes/bioconductor-facsdorit/post-link.sh +++ b/recipes/bioconductor-facsdorit/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/facsDorit_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/facsDorit_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-facsdorit/bioconductor-facsdorit_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-facsdorit/bioconductor-facsdorit_1.26.0_src_all.tar.gz" ) MD5="dcf6e4b99ee9e013e30ebd0f8ec678d0" diff --git a/recipes/bioconductor-factdesign/meta.yaml b/recipes/bioconductor-factdesign/meta.yaml index ac78e0215eb27..51cad66f446ca 100644 --- a/recipes/bioconductor-factdesign/meta.yaml +++ b/recipes/bioconductor-factdesign/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9db80d51dde4fe4debf4bcd1317e331d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-famagg/meta.yaml b/recipes/bioconductor-famagg/meta.yaml index be73682865ecb..4f576193c70af 100644 --- a/recipes/bioconductor-famagg/meta.yaml +++ b/recipes/bioconductor-famagg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d73b990b471a5bbc9a5f4a52010fdc1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fantom3and4cage/meta.yaml b/recipes/bioconductor-fantom3and4cage/meta.yaml index b3294356529a1..292c1cfc85130 100644 --- a/recipes/bioconductor-fantom3and4cage/meta.yaml +++ b/recipes/bioconductor-fantom3and4cage/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bfadfb9fe266c14e13c78de6887e8270 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fantom3and4cage/post-link.sh b/recipes/bioconductor-fantom3and4cage/post-link.sh index 86ba8f3688179..5fb036f33003d 100644 --- a/recipes/bioconductor-fantom3and4cage/post-link.sh +++ b/recipes/bioconductor-fantom3and4cage/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FANTOM3and4CAGE_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/FANTOM3and4CAGE_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-fantom3and4cage/bioconductor-fantom3and4cage_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-fantom3and4cage/bioconductor-fantom3and4cage_1.20.0_src_all.tar.gz" ) MD5="bfadfb9fe266c14e13c78de6887e8270" diff --git a/recipes/bioconductor-farms/meta.yaml b/recipes/bioconductor-farms/meta.yaml index 5ca38a23ff7f4..71b72a8e1aa01 100644 --- a/recipes/bioconductor-farms/meta.yaml +++ b/recipes/bioconductor-farms/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e03fed5237d059cc504f8311600938e1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fastliquidassociation/meta.yaml b/recipes/bioconductor-fastliquidassociation/meta.yaml index 650ca668fc32b..a3e6876a18733 100644 --- a/recipes/bioconductor-fastliquidassociation/meta.yaml +++ b/recipes/bioconductor-fastliquidassociation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 86c29b5cd8edd17a1844abbc2c40281d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fastqcleaner/meta.yaml b/recipes/bioconductor-fastqcleaner/meta.yaml index 19edb052b0eaf..111e24c31f94e 100644 --- a/recipes/bioconductor-fastqcleaner/meta.yaml +++ b/recipes/bioconductor-fastqcleaner/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9fd90848cb095f8768c8aa22cf426ab4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fastseg/meta.yaml b/recipes/bioconductor-fastseg/meta.yaml index 47fcc28c8eeb9..6ccd7703cd98f 100644 --- a/recipes/bioconductor-fastseg/meta.yaml +++ b/recipes/bioconductor-fastseg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3f4f576809b0b9de45d4e8ef2947eea6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fcbf/meta.yaml b/recipes/bioconductor-fcbf/meta.yaml index e198faaf2fba0..c06a6c5a8a236 100644 --- a/recipes/bioconductor-fcbf/meta.yaml +++ b/recipes/bioconductor-fcbf/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.1.1" %} +{% set version = "1.2.2" %} {% set name = "FCBF" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 4e239aa44d73220cddf8a7c7bf6855a2 + md5: f30aa510ded43443116bcca239f44058 build: number: 0 rpaths: @@ -24,11 +24,13 @@ requirements: - r-base - r-ggplot2 - r-gridextra + - r-pbapply run: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - r-base - r-ggplot2 - r-gridextra + - r-pbapply test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-fccac/meta.yaml b/recipes/bioconductor-fccac/meta.yaml index cda912e4c57ee..bf62162cdf48a 100644 --- a/recipes/bioconductor-fccac/meta.yaml +++ b/recipes/bioconductor-fccac/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6614471a57447b3ba938fb723cd9e661 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fci/build.sh b/recipes/bioconductor-fci/build.sh index 068014183bd4e..d87a754453352 100644 --- a/recipes/bioconductor-fci/build.sh +++ b/recipes/bioconductor-fci/build.sh @@ -1,5 +1,4 @@ #!/bin/bash -export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 mv DESCRIPTION DESCRIPTION.old grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION mkdir -p ~/.R @@ -9,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R CMD INSTALL --build . diff --git a/recipes/bioconductor-fci/meta.yaml b/recipes/bioconductor-fci/meta.yaml index 279e2c30eebd9..8c586e091b5f5 100644 --- a/recipes/bioconductor-fci/meta.yaml +++ b/recipes/bioconductor-fci/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d886adcdcb84a88b0c24d8f4ae4d910a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -20,12 +20,12 @@ build: # Suggests: knitr, rmarkdown, BiocStyle requirements: build: - - {{ cdt('mesa-libgl-devel') }} - - {{ cdt('mesa-dri-drivers') }} - - {{ cdt('libselinux') }} - - {{ cdt('libxdamage') }} - - {{ cdt('libxxf86vm') }} - - {{ cdt('libxfixes') }} + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - r-base - r-fnn @@ -44,7 +44,7 @@ requirements: - r-zoo test: commands: - - LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64:/usr/lib/x86_64-linux-gnu/" $R -e "library('{{ name }}')" + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>= 2)' diff --git a/recipes/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml b/recipes/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml index ac31c114bb17e..cb2088a87e59d 100644 --- a/recipes/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml +++ b/recipes/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 99a610eb895470e3d945acc5cfb3ebe6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fdb.infiniummethylation.hg18/meta.yaml b/recipes/bioconductor-fdb.infiniummethylation.hg18/meta.yaml index 81c7861a00c03..982df36e4f6ee 100644 --- a/recipes/bioconductor-fdb.infiniummethylation.hg18/meta.yaml +++ b/recipes/bioconductor-fdb.infiniummethylation.hg18/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 95ceab50d0a7c3d417cee12fbe3defb3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fdb.infiniummethylation.hg19/meta.yaml b/recipes/bioconductor-fdb.infiniummethylation.hg19/meta.yaml index 18fc3c478e0b7..3fca0cb27f059 100644 --- a/recipes/bioconductor-fdb.infiniummethylation.hg19/meta.yaml +++ b/recipes/bioconductor-fdb.infiniummethylation.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b8b1abc599b9556b9fe9c6e824cb2697 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fdb.ucsc.snp135common.hg19/meta.yaml b/recipes/bioconductor-fdb.ucsc.snp135common.hg19/meta.yaml index ea7b8a1891179..4cdcd843a2407 100644 --- a/recipes/bioconductor-fdb.ucsc.snp135common.hg19/meta.yaml +++ b/recipes/bioconductor-fdb.ucsc.snp135common.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0cdca5fa595bb69464016ceb97635f78 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fdb.ucsc.snp137common.hg19/meta.yaml b/recipes/bioconductor-fdb.ucsc.snp137common.hg19/meta.yaml index 55b24c86938ad..55df964a25f79 100644 --- a/recipes/bioconductor-fdb.ucsc.snp137common.hg19/meta.yaml +++ b/recipes/bioconductor-fdb.ucsc.snp137common.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dac83f2d2f9ea9f033e50beac5c44838 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fdb.ucsc.trnas/meta.yaml b/recipes/bioconductor-fdb.ucsc.trnas/meta.yaml index ebc7aa91e90f7..c3ed86e9af507 100644 --- a/recipes/bioconductor-fdb.ucsc.trnas/meta.yaml +++ b/recipes/bioconductor-fdb.ucsc.trnas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 77bfdadd4d9f995a72b001e4e41792fa build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fdrame/meta.yaml b/recipes/bioconductor-fdrame/meta.yaml index ce67dbbf0e0a4..2d4ba854a49b1 100644 --- a/recipes/bioconductor-fdrame/meta.yaml +++ b/recipes/bioconductor-fdrame/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8bb3059973a217274a7d8dec8a1250a3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fella/meta.yaml b/recipes/bioconductor-fella/meta.yaml index 1fdaca533f436..80e9f97c57149 100644 --- a/recipes/bioconductor-fella/meta.yaml +++ b/recipes/bioconductor-fella/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 25073ad00d5fbb978994cd4da5b403d5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fem/meta.yaml b/recipes/bioconductor-fem/meta.yaml index cd12a6d988ba1..77e25345f954a 100644 --- a/recipes/bioconductor-fem/meta.yaml +++ b/recipes/bioconductor-fem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0dfe9b41772263030ef193759c90acc3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ffpe/meta.yaml b/recipes/bioconductor-ffpe/meta.yaml index 0c3e44583628e..fe79a5400b322 100644 --- a/recipes/bioconductor-ffpe/meta.yaml +++ b/recipes/bioconductor-ffpe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 05ad7dc16b2f849f392123a3a6a8b7d2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ffpeexampledata/meta.yaml b/recipes/bioconductor-ffpeexampledata/meta.yaml index 9edbd9420a46d..26bb75c3efa0e 100644 --- a/recipes/bioconductor-ffpeexampledata/meta.yaml +++ b/recipes/bioconductor-ffpeexampledata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cc909cc2b13a7cc9a8238bdab9f68d08 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ffpeexampledata/post-link.sh b/recipes/bioconductor-ffpeexampledata/post-link.sh index 1990920b2e0a0..7f6809093ba66 100644 --- a/recipes/bioconductor-ffpeexampledata/post-link.sh +++ b/recipes/bioconductor-ffpeexampledata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ffpeExampleData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ffpeExampleData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ffpeexampledata/bioconductor-ffpeexampledata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ffpeexampledata/bioconductor-ffpeexampledata_1.22.0_src_all.tar.gz" ) MD5="cc909cc2b13a7cc9a8238bdab9f68d08" diff --git a/recipes/bioconductor-fgnet/meta.yaml b/recipes/bioconductor-fgnet/meta.yaml index bc4945b2605c2..5234e7585f02b 100644 --- a/recipes/bioconductor-fgnet/meta.yaml +++ b/recipes/bioconductor-fgnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 86c490d5ddaab231d0dfdd862f6aed95 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fgsea/meta.yaml b/recipes/bioconductor-fgsea/meta.yaml index 07f23100632c7..21d1b14d0d811 100644 --- a/recipes/bioconductor-fgsea/meta.yaml +++ b/recipes/bioconductor-fgsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4e28e16ce0ef3b3cd01eecd80e51a4fe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fibroeset/meta.yaml b/recipes/bioconductor-fibroeset/meta.yaml index 99d6161d2db77..401cb405a679e 100644 --- a/recipes/bioconductor-fibroeset/meta.yaml +++ b/recipes/bioconductor-fibroeset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cb7df36fe536a6bdbefeddf2086ec477 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fibroeset/post-link.sh b/recipes/bioconductor-fibroeset/post-link.sh index b2dd0d815d9b8..fec7344813496 100644 --- a/recipes/bioconductor-fibroeset/post-link.sh +++ b/recipes/bioconductor-fibroeset/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/fibroEset_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/fibroEset_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-fibroeset/bioconductor-fibroeset_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-fibroeset/bioconductor-fibroeset_1.26.0_src_all.tar.gz" ) MD5="cb7df36fe536a6bdbefeddf2086ec477" diff --git a/recipes/bioconductor-findmyfriends/meta.yaml b/recipes/bioconductor-findmyfriends/meta.yaml index eaaa4f4d6d7eb..8a8ffd9d166a4 100644 --- a/recipes/bioconductor-findmyfriends/meta.yaml +++ b/recipes/bioconductor-findmyfriends/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8f41164987f56ae09297da848cc88b31 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fis/meta.yaml b/recipes/bioconductor-fis/meta.yaml index eba0486a83911..cdbb1d80ed0f8 100644 --- a/recipes/bioconductor-fis/meta.yaml +++ b/recipes/bioconductor-fis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 26a808973c479d338754411a994a3df9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fis/post-link.sh b/recipes/bioconductor-fis/post-link.sh index 88f123c3c6291..09659cac07b79 100644 --- a/recipes/bioconductor-fis/post-link.sh +++ b/recipes/bioconductor-fis/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FIs_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/FIs_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-fis/bioconductor-fis_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-fis/bioconductor-fis_1.12.0_src_all.tar.gz" ) MD5="26a808973c479d338754411a994a3df9" diff --git a/recipes/bioconductor-fishalyser/meta.yaml b/recipes/bioconductor-fishalyser/meta.yaml index daefe252124a2..45657f7922025 100644 --- a/recipes/bioconductor-fishalyser/meta.yaml +++ b/recipes/bioconductor-fishalyser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: be6da4b0fcd9884da0ee3d01c3dcdf37 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fishpond/meta.yaml b/recipes/bioconductor-fishpond/meta.yaml index a379f025b0251..30574a8196e3d 100644 --- a/recipes/bioconductor-fishpond/meta.yaml +++ b/recipes/bioconductor-fishpond/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "fishpond" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 388955bba65408b9a29e29a2e9bff2ee + md5: 5b1ab589ae429f6617d50568a41c355f build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: testthat, knitr, rmarkdown, macrophage, tximeta, org.Hs.eg.db, DESeq2, apeglm +# Suggests: testthat, knitr, rmarkdown, macrophage, tximeta, org.Hs.eg.db, samr, DESeq2, apeglm requirements: host: - 'bioconductor-qvalue >=2.16.0,<2.17.0' @@ -25,8 +25,8 @@ requirements: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - r-abind - r-base + - r-gtools - r-matrixstats - - r-samr - r-svmisc run: - 'bioconductor-qvalue >=2.16.0,<2.17.0' @@ -34,8 +34,8 @@ requirements: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - r-abind - r-base + - r-gtools - r-matrixstats - - r-samr - r-svmisc test: commands: diff --git a/recipes/bioconductor-fission/meta.yaml b/recipes/bioconductor-fission/meta.yaml index 0be7436eba0a3..6042c088cb898 100644 --- a/recipes/bioconductor-fission/meta.yaml +++ b/recipes/bioconductor-fission/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9e37bceecdb13c6f82799730387e02d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fission/post-link.sh b/recipes/bioconductor-fission/post-link.sh index d05557795a17a..b73069e6ee346 100644 --- a/recipes/bioconductor-fission/post-link.sh +++ b/recipes/bioconductor-fission/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/fission_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/fission_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-fission/bioconductor-fission_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-fission/bioconductor-fission_1.4.0_src_all.tar.gz" ) MD5="9e37bceecdb13c6f82799730387e02d0" diff --git a/recipes/bioconductor-fitcons.ucsc.hg19/meta.yaml b/recipes/bioconductor-fitcons.ucsc.hg19/meta.yaml index 53062f7468dc7..8655c6b9edc91 100644 --- a/recipes/bioconductor-fitcons.ucsc.hg19/meta.yaml +++ b/recipes/bioconductor-fitcons.ucsc.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 53d954890ec9b91084664a10161ce391 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fithic/meta.yaml b/recipes/bioconductor-fithic/meta.yaml index 033d608ddf2d9..9f3015b7fd8e3 100644 --- a/recipes/bioconductor-fithic/meta.yaml +++ b/recipes/bioconductor-fithic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9ad2ef5671bfce808db7f9f61c64b93d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flagme/meta.yaml b/recipes/bioconductor-flagme/meta.yaml index 0aa3eb906a143..b6648ca9b2188 100644 --- a/recipes/bioconductor-flagme/meta.yaml +++ b/recipes/bioconductor-flagme/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 836cd0c2d6ef6d6f58af43228416412d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fletcher2013a/meta.yaml b/recipes/bioconductor-fletcher2013a/meta.yaml index 91f886c28312a..a6bc28404b277 100644 --- a/recipes/bioconductor-fletcher2013a/meta.yaml +++ b/recipes/bioconductor-fletcher2013a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3e34329457960bd66816855ecaba1584 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fletcher2013a/post-link.sh b/recipes/bioconductor-fletcher2013a/post-link.sh index d37c55311fbff..19048ffeec62b 100644 --- a/recipes/bioconductor-fletcher2013a/post-link.sh +++ b/recipes/bioconductor-fletcher2013a/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Fletcher2013a_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/Fletcher2013a_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-fletcher2013a/bioconductor-fletcher2013a_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-fletcher2013a/bioconductor-fletcher2013a_1.20.0_src_all.tar.gz" ) MD5="3e34329457960bd66816855ecaba1584" diff --git a/recipes/bioconductor-fletcher2013b/meta.yaml b/recipes/bioconductor-fletcher2013b/meta.yaml index d132dd9af2154..8c7615908c18f 100644 --- a/recipes/bioconductor-fletcher2013b/meta.yaml +++ b/recipes/bioconductor-fletcher2013b/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5da665ab15174d34747bfea5b972d48b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fletcher2013b/post-link.sh b/recipes/bioconductor-fletcher2013b/post-link.sh index 29df460366431..8b54d77fbf733 100644 --- a/recipes/bioconductor-fletcher2013b/post-link.sh +++ b/recipes/bioconductor-fletcher2013b/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Fletcher2013b_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/Fletcher2013b_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-fletcher2013b/bioconductor-fletcher2013b_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-fletcher2013b/bioconductor-fletcher2013b_1.20.0_src_all.tar.gz" ) MD5="5da665ab15174d34747bfea5b972d48b" diff --git a/recipes/bioconductor-flowai/meta.yaml b/recipes/bioconductor-flowai/meta.yaml index 3c12e06edf5a6..db47ae873cb93 100644 --- a/recipes/bioconductor-flowai/meta.yaml +++ b/recipes/bioconductor-flowai/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c887df5730d374cb7db2a7ef93524fe8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowbeads/meta.yaml b/recipes/bioconductor-flowbeads/meta.yaml index c350a5adc3658..b4aa31e0d6471 100644 --- a/recipes/bioconductor-flowbeads/meta.yaml +++ b/recipes/bioconductor-flowbeads/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aa74d00c38b7ea468cf450e3ab01001e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowbin/meta.yaml b/recipes/bioconductor-flowbin/meta.yaml index 4228f1307e21b..7e36943eaaf37 100644 --- a/recipes/bioconductor-flowbin/meta.yaml +++ b/recipes/bioconductor-flowbin/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bb3ae805b33e7df21ecf640f8cd5874f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowcatchr/meta.yaml b/recipes/bioconductor-flowcatchr/meta.yaml index e889e36f0ef02..93a9b1b9dec99 100644 --- a/recipes/bioconductor-flowcatchr/meta.yaml +++ b/recipes/bioconductor-flowcatchr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9c3d6e42f7c1073343ca5c0854422759 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -28,7 +28,6 @@ requirements: - r-colorramps - r-plotly - r-shiny - - imagemagick run: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' - 'bioconductor-ebimage >=4.26.0,<4.27.0' @@ -37,7 +36,6 @@ requirements: - r-colorramps - r-plotly - r-shiny - - imagemagick test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-flowchic/meta.yaml b/recipes/bioconductor-flowchic/meta.yaml index 3a5fc4c317ec2..66b94a933c166 100644 --- a/recipes/bioconductor-flowchic/meta.yaml +++ b/recipes/bioconductor-flowchic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 63c39e1f2a05a49e65601574812b1a21 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowcl/meta.yaml b/recipes/bioconductor-flowcl/meta.yaml index 032da59e63ebd..9ef0e93aa8318 100644 --- a/recipes/bioconductor-flowcl/meta.yaml +++ b/recipes/bioconductor-flowcl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0144cde0951e98a4f7a8471693807a52 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowclean/meta.yaml b/recipes/bioconductor-flowclean/meta.yaml index 4a40740dd39c8..55d8337acfbf9 100644 --- a/recipes/bioconductor-flowclean/meta.yaml +++ b/recipes/bioconductor-flowclean/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2b64b477a320b1858313596eb698a805 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowclust/meta.yaml b/recipes/bioconductor-flowclust/meta.yaml index 1657f467a6347..3111a6a7b408f 100644 --- a/recipes/bioconductor-flowclust/meta.yaml +++ b/recipes/bioconductor-flowclust/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 53d5656c14e1ba05708c2492ec629315 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowcore/meta.yaml b/recipes/bioconductor-flowcore/meta.yaml index 118e69aa559ca..7d7b215614432 100644 --- a/recipes/bioconductor-flowcore/meta.yaml +++ b/recipes/bioconductor-flowcore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd5fe2da3e045833d245472bfb1d92df build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowcybar/meta.yaml b/recipes/bioconductor-flowcybar/meta.yaml index 6d561e1b06197..5441a74cd53ca 100644 --- a/recipes/bioconductor-flowcybar/meta.yaml +++ b/recipes/bioconductor-flowcybar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3a40a7203f7e9b7ea9fd8b14a61e30cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowdensity/meta.yaml b/recipes/bioconductor-flowdensity/meta.yaml index 09446f44044e7..eb970501c530d 100644 --- a/recipes/bioconductor-flowdensity/meta.yaml +++ b/recipes/bioconductor-flowdensity/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8f3b83a8621c85305349c9e6e4a07e73 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -28,7 +28,6 @@ requirements: - r-rfoc - r-rgeos - r-sp - - geos >=3.2.0 run: - 'bioconductor-flowcore >=1.50.0,<1.51.0' - 'bioconductor-flowworkspace >=3.32.0,<3.33.0' @@ -38,7 +37,6 @@ requirements: - r-rfoc - r-rgeos - r-sp - - geos >=3.2.0 test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-flowfit/meta.yaml b/recipes/bioconductor-flowfit/meta.yaml index 18bc12ddb7d33..dec6eceb9919d 100644 --- a/recipes/bioconductor-flowfit/meta.yaml +++ b/recipes/bioconductor-flowfit/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bebb60e166df9b96234595340d3ce45e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowfitexampledata/meta.yaml b/recipes/bioconductor-flowfitexampledata/meta.yaml index af992b41ef0bc..b16da41e4c745 100644 --- a/recipes/bioconductor-flowfitexampledata/meta.yaml +++ b/recipes/bioconductor-flowfitexampledata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d5627c525cb0ab48377638d0af2e8c3c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowfitexampledata/post-link.sh b/recipes/bioconductor-flowfitexampledata/post-link.sh index a43ffc8891c3d..a4ebbd4446ac0 100644 --- a/recipes/bioconductor-flowfitexampledata/post-link.sh +++ b/recipes/bioconductor-flowfitexampledata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/flowFitExampleData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/flowFitExampleData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowfitexampledata/bioconductor-flowfitexampledata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowfitexampledata/bioconductor-flowfitexampledata_1.20.0_src_all.tar.gz" ) MD5="d5627c525cb0ab48377638d0af2e8c3c" diff --git a/recipes/bioconductor-flowfp/meta.yaml b/recipes/bioconductor-flowfp/meta.yaml index f2080bae7fd3e..202575fa96817 100644 --- a/recipes/bioconductor-flowfp/meta.yaml +++ b/recipes/bioconductor-flowfp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 42394f73038de936b2d9ad3b82bceee4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowmap/meta.yaml b/recipes/bioconductor-flowmap/meta.yaml index a6efb5832047a..fa27c9c37a905 100644 --- a/recipes/bioconductor-flowmap/meta.yaml +++ b/recipes/bioconductor-flowmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1956f3a204de01fecfbeb7ad53d2f824 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowmatch/meta.yaml b/recipes/bioconductor-flowmatch/meta.yaml index 8ad5c98196721..ee43deb892fcd 100644 --- a/recipes/bioconductor-flowmatch/meta.yaml +++ b/recipes/bioconductor-flowmatch/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a9f89f20a689dcf0acfb8f6f72fe47e8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowmeans/build.sh b/recipes/bioconductor-flowmeans/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-flowmeans/build.sh +++ b/recipes/bioconductor-flowmeans/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-flowmeans/meta.yaml b/recipes/bioconductor-flowmeans/meta.yaml index 60820f0c34b88..e0cebdbd7a47c 100644 --- a/recipes/bioconductor-flowmeans/meta.yaml +++ b/recipes/bioconductor-flowmeans/meta.yaml @@ -12,12 +12,19 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 26cf203fb97eed85439fc524aa63c39a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-flowcore >=1.50.0,<1.51.0' @@ -32,7 +39,7 @@ requirements: - r-rrcov test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 @@ -40,4 +47,3 @@ about: extra: container: extended-base: true - diff --git a/recipes/bioconductor-flowmerge/build.sh b/recipes/bioconductor-flowmerge/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-flowmerge/build.sh +++ b/recipes/bioconductor-flowmerge/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-flowmerge/meta.yaml b/recipes/bioconductor-flowmerge/meta.yaml index 92dc2c511586e..74281855af3d9 100644 --- a/recipes/bioconductor-flowmerge/meta.yaml +++ b/recipes/bioconductor-flowmerge/meta.yaml @@ -12,13 +12,20 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aa5796d15c5bbe1e10f1d1204cafe657 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic # Suggests: knitr, rmarkdown requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-flowclust >=3.22.0,<3.23.0' - 'bioconductor-flowcore >=1.50.0,<1.51.0' @@ -41,7 +48,7 @@ requirements: - r-snow test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 @@ -49,4 +56,3 @@ about: extra: container: extended-base: true - diff --git a/recipes/bioconductor-flowpeaks/meta.yaml b/recipes/bioconductor-flowpeaks/meta.yaml index 7e495ad5914a0..691d00e1ac346 100644 --- a/recipes/bioconductor-flowpeaks/meta.yaml +++ b/recipes/bioconductor-flowpeaks/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8af65bebd3bc3545a27d8f0d9da6c741 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -20,10 +20,8 @@ build: requirements: host: - r-base - - gsl run: - r-base - - gsl build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-flowploidy/meta.yaml b/recipes/bioconductor-flowploidy/meta.yaml index b0293ff578585..f872b56969559 100644 --- a/recipes/bioconductor-flowploidy/meta.yaml +++ b/recipes/bioconductor-flowploidy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8e4270702378029e598d7b82be4177a4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowploidydata/meta.yaml b/recipes/bioconductor-flowploidydata/meta.yaml index 35b30d51475ea..258e1a6925615 100644 --- a/recipes/bioconductor-flowploidydata/meta.yaml +++ b/recipes/bioconductor-flowploidydata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e207b89cdef6679d0ee10063a582c930 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowploidydata/post-link.sh b/recipes/bioconductor-flowploidydata/post-link.sh index c60bfa5265ddb..a6891dbf5d3f7 100644 --- a/recipes/bioconductor-flowploidydata/post-link.sh +++ b/recipes/bioconductor-flowploidydata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/flowPloidyData_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/flowPloidyData_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowploidydata/bioconductor-flowploidydata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowploidydata/bioconductor-flowploidydata_1.10.0_src_all.tar.gz" ) MD5="e207b89cdef6679d0ee10063a582c930" diff --git a/recipes/bioconductor-flowplots/meta.yaml b/recipes/bioconductor-flowplots/meta.yaml index e5d64b6b49503..1d10239ba5fdb 100644 --- a/recipes/bioconductor-flowplots/meta.yaml +++ b/recipes/bioconductor-flowplots/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7006726f05d103ef51ab895d105c2b5e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowqb/meta.yaml b/recipes/bioconductor-flowqb/meta.yaml index 74929b0101b88..5ecb16515a358 100644 --- a/recipes/bioconductor-flowqb/meta.yaml +++ b/recipes/bioconductor-flowqb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3326238deb71a39ac4cfa69c29dc76c1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowqbdata/meta.yaml b/recipes/bioconductor-flowqbdata/meta.yaml index d77b2f93528b9..953063f9f009c 100644 --- a/recipes/bioconductor-flowqbdata/meta.yaml +++ b/recipes/bioconductor-flowqbdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e5d94c8fb66f811c34a7a92ef607f20d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowqbdata/post-link.sh b/recipes/bioconductor-flowqbdata/post-link.sh index 4d7d117294267..147f0b2256d42 100644 --- a/recipes/bioconductor-flowqbdata/post-link.sh +++ b/recipes/bioconductor-flowqbdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/flowQBData_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/flowQBData_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowqbdata/bioconductor-flowqbdata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowqbdata/bioconductor-flowqbdata_1.10.0_src_all.tar.gz" ) MD5="e5d94c8fb66f811c34a7a92ef607f20d" diff --git a/recipes/bioconductor-flowrepositoryr/meta.yaml b/recipes/bioconductor-flowrepositoryr/meta.yaml index 399c4294982ce..5248225d0b484 100644 --- a/recipes/bioconductor-flowrepositoryr/meta.yaml +++ b/recipes/bioconductor-flowrepositoryr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 412477b926637675d6c9b2dbd0d07c1f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowsom/meta.yaml b/recipes/bioconductor-flowsom/meta.yaml index e8990fe77c7f9..e9e2cb48f1c1b 100644 --- a/recipes/bioconductor-flowsom/meta.yaml +++ b/recipes/bioconductor-flowsom/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b28182a7c8e7d0a062c93d7e709ab789 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowsorted.blood.450k/meta.yaml b/recipes/bioconductor-flowsorted.blood.450k/meta.yaml index b2d1c9e768aac..bbd5c284a3bc4 100644 --- a/recipes/bioconductor-flowsorted.blood.450k/meta.yaml +++ b/recipes/bioconductor-flowsorted.blood.450k/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d2a79cbca36828a67db9655e7e23e059 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowsorted.blood.450k/post-link.sh b/recipes/bioconductor-flowsorted.blood.450k/post-link.sh index 9e1faa7cefcca..a7874623cbedf 100644 --- a/recipes/bioconductor-flowsorted.blood.450k/post-link.sh +++ b/recipes/bioconductor-flowsorted.blood.450k/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FlowSorted.Blood.450k_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/FlowSorted.Blood.450k_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowsorted.blood.450k/bioconductor-flowsorted.blood.450k_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowsorted.blood.450k/bioconductor-flowsorted.blood.450k_1.22.0_src_all.tar.gz" ) MD5="d2a79cbca36828a67db9655e7e23e059" diff --git a/recipes/bioconductor-flowsorted.blood.epic/meta.yaml b/recipes/bioconductor-flowsorted.blood.epic/meta.yaml index 5ce566669829b..45978b78fe7b6 100644 --- a/recipes/bioconductor-flowsorted.blood.epic/meta.yaml +++ b/recipes/bioconductor-flowsorted.blood.epic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4e6f8a48f8d8504c3027429fb164eb98 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowsorted.blood.epic/post-link.sh b/recipes/bioconductor-flowsorted.blood.epic/post-link.sh index 551376e03a159..22990dd154a2e 100644 --- a/recipes/bioconductor-flowsorted.blood.epic/post-link.sh +++ b/recipes/bioconductor-flowsorted.blood.epic/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FlowSorted.Blood.EPIC_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/FlowSorted.Blood.EPIC_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowsorted.blood.epic/bioconductor-flowsorted.blood.epic_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowsorted.blood.epic/bioconductor-flowsorted.blood.epic_1.2.0_src_all.tar.gz" ) MD5="4e6f8a48f8d8504c3027429fb164eb98" diff --git a/recipes/bioconductor-flowsorted.cordblood.450k/meta.yaml b/recipes/bioconductor-flowsorted.cordblood.450k/meta.yaml index 2553aca8a0148..1feb1ce846ae6 100644 --- a/recipes/bioconductor-flowsorted.cordblood.450k/meta.yaml +++ b/recipes/bioconductor-flowsorted.cordblood.450k/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 35c1420b23f1016c0953af3f67a48e07 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowsorted.cordblood.450k/post-link.sh b/recipes/bioconductor-flowsorted.cordblood.450k/post-link.sh index b8560d8858d90..ad87ca2c1e404 100644 --- a/recipes/bioconductor-flowsorted.cordblood.450k/post-link.sh +++ b/recipes/bioconductor-flowsorted.cordblood.450k/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FlowSorted.CordBlood.450k_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/FlowSorted.CordBlood.450k_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowsorted.cordblood.450k/bioconductor-flowsorted.cordblood.450k_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowsorted.cordblood.450k/bioconductor-flowsorted.cordblood.450k_1.12.0_src_all.tar.gz" ) MD5="35c1420b23f1016c0953af3f67a48e07" diff --git a/recipes/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml b/recipes/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml index 3d53291d71cb8..565f47299967f 100644 --- a/recipes/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml +++ b/recipes/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 526f5a9879e6ae163dcbea71951cd91c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowsorted.cordbloodcombined.450k/post-link.sh b/recipes/bioconductor-flowsorted.cordbloodcombined.450k/post-link.sh index af235037c9d3c..b21c1260e6c30 100644 --- a/recipes/bioconductor-flowsorted.cordbloodcombined.450k/post-link.sh +++ b/recipes/bioconductor-flowsorted.cordbloodcombined.450k/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FlowSorted.CordBloodCombined.450k_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/FlowSorted.CordBloodCombined.450k_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowsorted.cordbloodcombined.450k/bioconductor-flowsorted.cordbloodcombined.450k_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowsorted.cordbloodcombined.450k/bioconductor-flowsorted.cordbloodcombined.450k_1.0.0_src_all.tar.gz" ) MD5="526f5a9879e6ae163dcbea71951cd91c" diff --git a/recipes/bioconductor-flowsorted.cordbloodnorway.450k/meta.yaml b/recipes/bioconductor-flowsorted.cordbloodnorway.450k/meta.yaml index 3f64e57a79159..11077bd4a2db5 100644 --- a/recipes/bioconductor-flowsorted.cordbloodnorway.450k/meta.yaml +++ b/recipes/bioconductor-flowsorted.cordbloodnorway.450k/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 83e0a618318a466dbb7df19db7340909 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowsorted.cordbloodnorway.450k/post-link.sh b/recipes/bioconductor-flowsorted.cordbloodnorway.450k/post-link.sh index 48207917a5635..f9b60b8b0f7ca 100644 --- a/recipes/bioconductor-flowsorted.cordbloodnorway.450k/post-link.sh +++ b/recipes/bioconductor-flowsorted.cordbloodnorway.450k/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FlowSorted.CordBloodNorway.450k_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/FlowSorted.CordBloodNorway.450k_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowsorted.cordbloodnorway.450k/bioconductor-flowsorted.cordbloodnorway.450k_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowsorted.cordbloodnorway.450k/bioconductor-flowsorted.cordbloodnorway.450k_1.10.0_src_all.tar.gz" ) MD5="83e0a618318a466dbb7df19db7340909" diff --git a/recipes/bioconductor-flowsorted.dlpfc.450k/meta.yaml b/recipes/bioconductor-flowsorted.dlpfc.450k/meta.yaml index f1f015780513c..dd78ce803e56d 100644 --- a/recipes/bioconductor-flowsorted.dlpfc.450k/meta.yaml +++ b/recipes/bioconductor-flowsorted.dlpfc.450k/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2079268ebe8b094cc960b96c9ab94876 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowsorted.dlpfc.450k/post-link.sh b/recipes/bioconductor-flowsorted.dlpfc.450k/post-link.sh index 00e3b87b053e8..2ed941c027205 100644 --- a/recipes/bioconductor-flowsorted.dlpfc.450k/post-link.sh +++ b/recipes/bioconductor-flowsorted.dlpfc.450k/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FlowSorted.DLPFC.450k_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/FlowSorted.DLPFC.450k_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowsorted.dlpfc.450k/bioconductor-flowsorted.dlpfc.450k_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowsorted.dlpfc.450k/bioconductor-flowsorted.dlpfc.450k_1.20.0_src_all.tar.gz" ) MD5="2079268ebe8b094cc960b96c9ab94876" diff --git a/recipes/bioconductor-flowstats/meta.yaml b/recipes/bioconductor-flowstats/meta.yaml index bf9ef04525ff9..14ff18649db1f 100644 --- a/recipes/bioconductor-flowstats/meta.yaml +++ b/recipes/bioconductor-flowstats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e79d22f2752f9f575bd057c3bed7fd5b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowtime/meta.yaml b/recipes/bioconductor-flowtime/meta.yaml index d3f10bafe4d19..e84ef49ee42a4 100644 --- a/recipes/bioconductor-flowtime/meta.yaml +++ b/recipes/bioconductor-flowtime/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d14bb00e157e0c1204f1304d9106b693 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowtrans/meta.yaml b/recipes/bioconductor-flowtrans/meta.yaml index 7a6acb09cda4a..bc0175a50784d 100644 --- a/recipes/bioconductor-flowtrans/meta.yaml +++ b/recipes/bioconductor-flowtrans/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5be3fa82b2892bc99ad35307f9395b35 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowtype/build.sh b/recipes/bioconductor-flowtype/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-flowtype/build.sh +++ b/recipes/bioconductor-flowtype/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-flowtype/meta.yaml b/recipes/bioconductor-flowtype/meta.yaml index e991013d11b86..44d445eb25d02 100644 --- a/recipes/bioconductor-flowtype/meta.yaml +++ b/recipes/bioconductor-flowtype/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ee8256e879c82ce3ea542245b829c72a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -44,9 +44,16 @@ requirements: - {{ compiler('c') }} - {{ compiler('cxx') }} - make + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] + test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 @@ -54,4 +61,3 @@ about: extra: container: extended-base: true - diff --git a/recipes/bioconductor-flowutils/meta.yaml b/recipes/bioconductor-flowutils/meta.yaml index de8a21c2090eb..3293efead4180 100644 --- a/recipes/bioconductor-flowutils/meta.yaml +++ b/recipes/bioconductor-flowutils/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6e5a358c3a1fef2abfe65b50f0dbc32f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowviz/meta.yaml b/recipes/bioconductor-flowviz/meta.yaml index d410cc69c277d..9f124ad47189f 100644 --- a/recipes/bioconductor-flowviz/meta.yaml +++ b/recipes/bioconductor-flowviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6919f8a0332621f4805e2b395c9c58b7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowvs/meta.yaml b/recipes/bioconductor-flowvs/meta.yaml index 095886d516c2d..07efe40e1ac93 100644 --- a/recipes/bioconductor-flowvs/meta.yaml +++ b/recipes/bioconductor-flowvs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b664e794b1e3998631475b893d92bc39 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowworkspace/meta.yaml b/recipes/bioconductor-flowworkspace/meta.yaml index 70ed901e91f3d..1c188c77db7a9 100644 --- a/recipes/bioconductor-flowworkspace/meta.yaml +++ b/recipes/bioconductor-flowworkspace/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 797fa4879c1d4bab3f8daf1a845eac98 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowworkspacedata/meta.yaml b/recipes/bioconductor-flowworkspacedata/meta.yaml index 5f7900cf7336d..1319c5a59854e 100644 --- a/recipes/bioconductor-flowworkspacedata/meta.yaml +++ b/recipes/bioconductor-flowworkspacedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c729e940217ce7298e58ddb4b654b85a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-flowworkspacedata/post-link.sh b/recipes/bioconductor-flowworkspacedata/post-link.sh index 2be33751d0472..ef0006ffa0ea2 100644 --- a/recipes/bioconductor-flowworkspacedata/post-link.sh +++ b/recipes/bioconductor-flowworkspacedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/flowWorkspaceData_2.20.0.tar.gz" "https://bioarchive.galaxyproject.org/flowWorkspaceData_2.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-flowworkspacedata/bioconductor-flowworkspacedata_2.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-flowworkspacedata/bioconductor-flowworkspacedata_2.20.0_src_all.tar.gz" ) MD5="c729e940217ce7298e58ddb4b654b85a" diff --git a/recipes/bioconductor-fly.db0/meta.yaml b/recipes/bioconductor-fly.db0/meta.yaml index af3766cad685a..75b637b96e491 100644 --- a/recipes/bioconductor-fly.db0/meta.yaml +++ b/recipes/bioconductor-fly.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 96b1c49edc7c11bc6a76f74c15308053 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-fly.db0/post-link.sh b/recipes/bioconductor-fly.db0/post-link.sh index 7f8de655203a4..76ae4017b4ca5 100644 --- a/recipes/bioconductor-fly.db0/post-link.sh +++ b/recipes/bioconductor-fly.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/fly.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/fly.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-fly.db0/bioconductor-fly.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-fly.db0/bioconductor-fly.db0_3.8.2_src_all.tar.gz" ) MD5="96b1c49edc7c11bc6a76f74c15308053" diff --git a/recipes/bioconductor-fmcsr/meta.yaml b/recipes/bioconductor-fmcsr/meta.yaml index 21a0babb5ec03..987e9515b2b33 100644 --- a/recipes/bioconductor-fmcsr/meta.yaml +++ b/recipes/bioconductor-fmcsr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a4e4eb7851b2c51f6f21a85ac7af7247 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-focalcall/meta.yaml b/recipes/bioconductor-focalcall/meta.yaml index db906285ce0d5..dda2b4df012ac 100644 --- a/recipes/bioconductor-focalcall/meta.yaml +++ b/recipes/bioconductor-focalcall/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c555b50351bca8977b62353027cc35f1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-foldgo/meta.yaml b/recipes/bioconductor-foldgo/meta.yaml index afe1083242c72..99b0d966590d9 100644 --- a/recipes/bioconductor-foldgo/meta.yaml +++ b/recipes/bioconductor-foldgo/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.3" %} {% set name = "FoldGO" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 38aba737bd38b3346c7ef5457cffe0ae + md5: df4fabb59f2def7a932a0b2bfdfa31fc build: number: 0 rpaths: diff --git a/recipes/bioconductor-fourcseq/meta.yaml b/recipes/bioconductor-fourcseq/meta.yaml index cfd2220fad20b..4fb54b1710ea3 100644 --- a/recipes/bioconductor-fourcseq/meta.yaml +++ b/recipes/bioconductor-fourcseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8433a631778a0686ed1107a965e96e8b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-frgepistasis/meta.yaml b/recipes/bioconductor-frgepistasis/meta.yaml index 77cdf7c0342e3..46faf594357c1 100644 --- a/recipes/bioconductor-frgepistasis/meta.yaml +++ b/recipes/bioconductor-frgepistasis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 37952e856c57599225394728b3730b97 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-frma/meta.yaml b/recipes/bioconductor-frma/meta.yaml index 90bebae641438..49180527e84cd 100644 --- a/recipes/bioconductor-frma/meta.yaml +++ b/recipes/bioconductor-frma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 94bf551993ea56f77e48330bfe13b0db build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-frmaexampledata/meta.yaml b/recipes/bioconductor-frmaexampledata/meta.yaml index fc255e347fdb4..b4746a797c999 100644 --- a/recipes/bioconductor-frmaexampledata/meta.yaml +++ b/recipes/bioconductor-frmaexampledata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3eb2349bbcc2b56bc60f2f7911e6d7cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-frmaexampledata/post-link.sh b/recipes/bioconductor-frmaexampledata/post-link.sh index 331be912b1c37..9a58d23675004 100644 --- a/recipes/bioconductor-frmaexampledata/post-link.sh +++ b/recipes/bioconductor-frmaexampledata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/frmaExampleData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/frmaExampleData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-frmaexampledata/bioconductor-frmaexampledata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-frmaexampledata/bioconductor-frmaexampledata_1.20.0_src_all.tar.gz" ) MD5="3eb2349bbcc2b56bc60f2f7911e6d7cc" diff --git a/recipes/bioconductor-frmatools/meta.yaml b/recipes/bioconductor-frmatools/meta.yaml index 662f0ac01e822..0d6edcc0b840e 100644 --- a/recipes/bioconductor-frmatools/meta.yaml +++ b/recipes/bioconductor-frmatools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: db1ec01c20b52ddc34d3c8161bf13da4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-funchip/meta.yaml b/recipes/bioconductor-funchip/meta.yaml index db0b9f29a388b..46dbd05b8afa9 100644 --- a/recipes/bioconductor-funchip/meta.yaml +++ b/recipes/bioconductor-funchip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 24e2ce91810cb2a528e349b51e968597 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-funcisnp.data/meta.yaml b/recipes/bioconductor-funcisnp.data/meta.yaml index 9e480cd0a42db..256a334a5b10b 100644 --- a/recipes/bioconductor-funcisnp.data/meta.yaml +++ b/recipes/bioconductor-funcisnp.data/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 693316a2d7cea94fbf95e20e011ae1be build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-funcisnp.data/post-link.sh b/recipes/bioconductor-funcisnp.data/post-link.sh index bd2816173965a..e8227ee6bc547 100644 --- a/recipes/bioconductor-funcisnp.data/post-link.sh +++ b/recipes/bioconductor-funcisnp.data/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/FunciSNP.data_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/FunciSNP.data_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-funcisnp.data/bioconductor-funcisnp.data_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-funcisnp.data/bioconductor-funcisnp.data_1.20.0_src_all.tar.gz" ) MD5="693316a2d7cea94fbf95e20e011ae1be" diff --git a/recipes/bioconductor-funcisnp/meta.yaml b/recipes/bioconductor-funcisnp/meta.yaml index b0c6e3a43ef83..bc632ff77ed55 100644 --- a/recipes/bioconductor-funcisnp/meta.yaml +++ b/recipes/bioconductor-funcisnp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 62d1b1948e8ebd9737593809f8644870 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-funtoonorm/meta.yaml b/recipes/bioconductor-funtoonorm/meta.yaml index efe51cf97599a..714743363e913 100644 --- a/recipes/bioconductor-funtoonorm/meta.yaml +++ b/recipes/bioconductor-funtoonorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b6d50989a81ea88fe52f9bf110a7bd17 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-furrowseg/meta.yaml b/recipes/bioconductor-furrowseg/meta.yaml index 3114c05e37be3..4d1ac6a39cc1c 100644 --- a/recipes/bioconductor-furrowseg/meta.yaml +++ b/recipes/bioconductor-furrowseg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ce4d21cb772147f45976e3e47612cfb0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-furrowseg/post-link.sh b/recipes/bioconductor-furrowseg/post-link.sh index 12dee654afd50..25d7847f80391 100644 --- a/recipes/bioconductor-furrowseg/post-link.sh +++ b/recipes/bioconductor-furrowseg/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/furrowSeg_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/furrowSeg_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-furrowseg/bioconductor-furrowseg_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-furrowseg/bioconductor-furrowseg_1.12.0_src_all.tar.gz" ) MD5="ce4d21cb772147f45976e3e47612cfb0" diff --git a/recipes/bioconductor-ga4ghclient/meta.yaml b/recipes/bioconductor-ga4ghclient/meta.yaml index e64030c3c5995..04f3580e071a2 100644 --- a/recipes/bioconductor-ga4ghclient/meta.yaml +++ b/recipes/bioconductor-ga4ghclient/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ef72497f8aed503e012fa063162a496 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ga4ghshiny/meta.yaml b/recipes/bioconductor-ga4ghshiny/meta.yaml index 8b3bf27dbf9cc..28825829140f3 100644 --- a/recipes/bioconductor-ga4ghshiny/meta.yaml +++ b/recipes/bioconductor-ga4ghshiny/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a619b2ae29713b73728f89295c804fe0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gaga/meta.yaml b/recipes/bioconductor-gaga/meta.yaml index 9265b259ad70e..60ba6477eb606 100644 --- a/recipes/bioconductor-gaga/meta.yaml +++ b/recipes/bioconductor-gaga/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fe0fd738660de0e168906463bee2143c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gage/meta.yaml b/recipes/bioconductor-gage/meta.yaml index 0ca92cdc85ff4..685889a875a99 100644 --- a/recipes/bioconductor-gage/meta.yaml +++ b/recipes/bioconductor-gage/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 986f20d5fa1a55d8f9a6f90e42ffbf73 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gagedata/meta.yaml b/recipes/bioconductor-gagedata/meta.yaml index 0dd14d07c4c6e..aca74968e5fe3 100644 --- a/recipes/bioconductor-gagedata/meta.yaml +++ b/recipes/bioconductor-gagedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b20e038013ae19b70c5dc543fea69efe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gagedata/post-link.sh b/recipes/bioconductor-gagedata/post-link.sh index 37a294261e5c2..6096f90bc0500 100644 --- a/recipes/bioconductor-gagedata/post-link.sh +++ b/recipes/bioconductor-gagedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/gageData_2.22.0.tar.gz" "https://bioarchive.galaxyproject.org/gageData_2.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gagedata/bioconductor-gagedata_2.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gagedata/bioconductor-gagedata_2.22.0_src_all.tar.gz" ) MD5="b20e038013ae19b70c5dc543fea69efe" diff --git a/recipes/bioconductor-gaggle/meta.yaml b/recipes/bioconductor-gaggle/meta.yaml index 1ccf4dac6729b..c74bf719109ca 100644 --- a/recipes/bioconductor-gaggle/meta.yaml +++ b/recipes/bioconductor-gaggle/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4c1228a547ec5dd7bc84989fe799167c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gaia/meta.yaml b/recipes/bioconductor-gaia/meta.yaml index 2a0c4860d0ed1..6b8e23ec75a33 100644 --- a/recipes/bioconductor-gaia/meta.yaml +++ b/recipes/bioconductor-gaia/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1f9c21a6827807196e692492a66421a4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gapgom/meta.yaml b/recipes/bioconductor-gapgom/meta.yaml index 4f31438ede8ba..07240d4060c66 100644 --- a/recipes/bioconductor-gapgom/meta.yaml +++ b/recipes/bioconductor-gapgom/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f759c198b3ba235a97ca2aa9774957c6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gaprediction/meta.yaml b/recipes/bioconductor-gaprediction/meta.yaml index 15ba8aa66c192..760a8d7aab33c 100644 --- a/recipes/bioconductor-gaprediction/meta.yaml +++ b/recipes/bioconductor-gaprediction/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 90976d9f97e8ca28b0f6f54e07a142a5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-garfield/meta.yaml b/recipes/bioconductor-garfield/meta.yaml index b614e8b65eb84..6ed8a37bef0c3 100644 --- a/recipes/bioconductor-garfield/meta.yaml +++ b/recipes/bioconductor-garfield/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6716cb811197c02cd261b63f47272001 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gars/meta.yaml b/recipes/bioconductor-gars/meta.yaml index 1abe5e20240be..4c810f647b042 100644 --- a/recipes/bioconductor-gars/meta.yaml +++ b/recipes/bioconductor-gars/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b665e44406eda49f0709b6fd442b69ec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gaschyhs/meta.yaml b/recipes/bioconductor-gaschyhs/meta.yaml index 03bc7146350a8..8bbd4c510f739 100644 --- a/recipes/bioconductor-gaschyhs/meta.yaml +++ b/recipes/bioconductor-gaschyhs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 640ea3dc1bccf57861211b0f6395ec1b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gaschyhs/post-link.sh b/recipes/bioconductor-gaschyhs/post-link.sh index 58ee910de7082..709491f93f555 100644 --- a/recipes/bioconductor-gaschyhs/post-link.sh +++ b/recipes/bioconductor-gaschyhs/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/gaschYHS_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/gaschYHS_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gaschyhs/bioconductor-gaschyhs_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gaschyhs/bioconductor-gaschyhs_1.22.0_src_all.tar.gz" ) MD5="640ea3dc1bccf57861211b0f6395ec1b" diff --git a/recipes/bioconductor-gatefinder/meta.yaml b/recipes/bioconductor-gatefinder/meta.yaml index 9a9dd1f210626..5a35657ddc2c9 100644 --- a/recipes/bioconductor-gatefinder/meta.yaml +++ b/recipes/bioconductor-gatefinder/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 761325ed0ae4c8fd95f7e6209b21a4ce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gatingmldata/meta.yaml b/recipes/bioconductor-gatingmldata/meta.yaml index 21fa073f61adc..59ab51498008d 100644 --- a/recipes/bioconductor-gatingmldata/meta.yaml +++ b/recipes/bioconductor-gatingmldata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8738620aac52004fefa9a3af7194df75 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gatingmldata/post-link.sh b/recipes/bioconductor-gatingmldata/post-link.sh index 1a7bf1df165b3..75290cd6a6a9a 100644 --- a/recipes/bioconductor-gatingmldata/post-link.sh +++ b/recipes/bioconductor-gatingmldata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/gatingMLData_2.24.0.tar.gz" "https://bioarchive.galaxyproject.org/gatingMLData_2.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gatingmldata/bioconductor-gatingmldata_2.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gatingmldata/bioconductor-gatingmldata_2.24.0_src_all.tar.gz" ) MD5="8738620aac52004fefa9a3af7194df75" diff --git a/recipes/bioconductor-gcapc/meta.yaml b/recipes/bioconductor-gcapc/meta.yaml index 0f4ac33ab79ec..73a51c17f1daa 100644 --- a/recipes/bioconductor-gcapc/meta.yaml +++ b/recipes/bioconductor-gcapc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f607d7621f7ace1805fcd7a3afd84641 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gcatest/meta.yaml b/recipes/bioconductor-gcatest/meta.yaml index 2f8fb8efe4c4f..8890c3322fcf9 100644 --- a/recipes/bioconductor-gcatest/meta.yaml +++ b/recipes/bioconductor-gcatest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 443b739eb0572f57d9a0a6d7e4a2a620 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gcmap/meta.yaml b/recipes/bioconductor-gcmap/meta.yaml index f923b2c8977d3..969d5ad5b5b10 100644 --- a/recipes/bioconductor-gcmap/meta.yaml +++ b/recipes/bioconductor-gcmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 059af72e07332cff9038a6abe84cf21a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gcmapweb/meta.yaml b/recipes/bioconductor-gcmapweb/meta.yaml index 37db43f251bc9..981d78b7730fd 100644 --- a/recipes/bioconductor-gcmapweb/meta.yaml +++ b/recipes/bioconductor-gcmapweb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 271ff957589aeabcef3b64198399ad4d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gcrisprtools/meta.yaml b/recipes/bioconductor-gcrisprtools/meta.yaml index 40f3cc1084f09..e4b6c7b03ce62 100644 --- a/recipes/bioconductor-gcrisprtools/meta.yaml +++ b/recipes/bioconductor-gcrisprtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e5485064448e1a89aedae9dbb1725be1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gcrma/meta.yaml b/recipes/bioconductor-gcrma/meta.yaml index 860aa082f72d2..44d3f082910ad 100644 --- a/recipes/bioconductor-gcrma/meta.yaml +++ b/recipes/bioconductor-gcrma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 62510ade73f9c0b8823e51b6bff2c322 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gcspikelite/meta.yaml b/recipes/bioconductor-gcspikelite/meta.yaml index 6aca6897360ea..1db5f2f819051 100644 --- a/recipes/bioconductor-gcspikelite/meta.yaml +++ b/recipes/bioconductor-gcspikelite/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 008f920fa946568d0e31d4333e2fe28c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gcspikelite/post-link.sh b/recipes/bioconductor-gcspikelite/post-link.sh index 25ba2a28abbb5..7c26efef55ab5 100644 --- a/recipes/bioconductor-gcspikelite/post-link.sh +++ b/recipes/bioconductor-gcspikelite/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/gcspikelite_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/gcspikelite_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gcspikelite/bioconductor-gcspikelite_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gcspikelite/bioconductor-gcspikelite_1.22.0_src_all.tar.gz" ) MD5="008f920fa946568d0e31d4333e2fe28c" diff --git a/recipes/bioconductor-gdcrnatools/meta.yaml b/recipes/bioconductor-gdcrnatools/meta.yaml index 3690eec145f25..6f69600333dba 100644 --- a/recipes/bioconductor-gdcrnatools/meta.yaml +++ b/recipes/bioconductor-gdcrnatools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4dcda733dd967b458c3c2299a5ac3f0e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gdsarray/meta.yaml b/recipes/bioconductor-gdsarray/meta.yaml index b2eeb4a003a0d..5135cb19728ea 100644 --- a/recipes/bioconductor-gdsarray/meta.yaml +++ b/recipes/bioconductor-gdsarray/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.2" %} {% set name = "GDSArray" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 182eb14be19507ec332ea86f92eec9c1 + md5: f5ff717369cb6c0267dc12c9d9eff387 build: number: 0 rpaths: diff --git a/recipes/bioconductor-gdsfmt/meta.yaml b/recipes/bioconductor-gdsfmt/meta.yaml index 5fedf30373cda..506f0de8e4c3b 100644 --- a/recipes/bioconductor-gdsfmt/meta.yaml +++ b/recipes/bioconductor-gdsfmt/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5778f3ca0a10bc914759350f8d42e091 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geecc/meta.yaml b/recipes/bioconductor-geecc/meta.yaml index d6176c4be0acf..602967f56c90e 100644 --- a/recipes/bioconductor-geecc/meta.yaml +++ b/recipes/bioconductor-geecc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4f779900b8bc8e0953aa230712cc1f61 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gem/meta.yaml b/recipes/bioconductor-gem/meta.yaml index f07928c80e411..c158dde044784 100644 --- a/recipes/bioconductor-gem/meta.yaml +++ b/recipes/bioconductor-gem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2e92486e419e74aa7da4884e857cb7ad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genarise/meta.yaml b/recipes/bioconductor-genarise/meta.yaml index 30203a403c61b..730862755dd52 100644 --- a/recipes/bioconductor-genarise/meta.yaml +++ b/recipes/bioconductor-genarise/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 402bb601fc9494da58dacac7c66457f6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genbankr/meta.yaml b/recipes/bioconductor-genbankr/meta.yaml index 79fe08524ec24..84034f8d990e7 100644 --- a/recipes/bioconductor-genbankr/meta.yaml +++ b/recipes/bioconductor-genbankr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 282798884cfbad30dc4ff75b1498c910 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneaccord/meta.yaml b/recipes/bioconductor-geneaccord/meta.yaml index 671a769eeffec..b771970863b8f 100644 --- a/recipes/bioconductor-geneaccord/meta.yaml +++ b/recipes/bioconductor-geneaccord/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2af2f56aea9f6d6e079a19365ece474a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneanswers/meta.yaml b/recipes/bioconductor-geneanswers/meta.yaml index a8177c41a2376..adb7df0bfe8ad 100644 --- a/recipes/bioconductor-geneanswers/meta.yaml +++ b/recipes/bioconductor-geneanswers/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd8e5e90f98efbb2045e11d42e1b1f36 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneattribution/meta.yaml b/recipes/bioconductor-geneattribution/meta.yaml index 4db4000922b5d..82109efbf7d67 100644 --- a/recipes/bioconductor-geneattribution/meta.yaml +++ b/recipes/bioconductor-geneattribution/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 37a9d2c93f2b96fd64ca5e27574680a0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genebreak/meta.yaml b/recipes/bioconductor-genebreak/meta.yaml index 3f6dc5acbf301..f497ec0146e4d 100644 --- a/recipes/bioconductor-genebreak/meta.yaml +++ b/recipes/bioconductor-genebreak/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dc709035c22b79fe16ce899a4e300857 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneclassifiers/meta.yaml b/recipes/bioconductor-geneclassifiers/meta.yaml index 2274568a3ec8d..03d6e2750b97e 100644 --- a/recipes/bioconductor-geneclassifiers/meta.yaml +++ b/recipes/bioconductor-geneclassifiers/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 70331d8e3d86ebc811c144dd58759ca4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneexpressionsignature/meta.yaml b/recipes/bioconductor-geneexpressionsignature/meta.yaml index cea78c036ed00..1bbb4638b18a6 100644 --- a/recipes/bioconductor-geneexpressionsignature/meta.yaml +++ b/recipes/bioconductor-geneexpressionsignature/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 295460a18d140851e6f3852e80973cd4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genefilter/meta.yaml b/recipes/bioconductor-genefilter/meta.yaml index 0fb34033dd65b..11ccf7cb49f2f 100644 --- a/recipes/bioconductor-genefilter/meta.yaml +++ b/recipes/bioconductor-genefilter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 89a16c8a1c9ec26f6429981b785a15b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genefu/meta.yaml b/recipes/bioconductor-genefu/meta.yaml index ecba655532a0e..7e8821c026a17 100644 --- a/recipes/bioconductor-genefu/meta.yaml +++ b/recipes/bioconductor-genefu/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 55607b25477679e847b5febd2b8345e0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genega/meta.yaml b/recipes/bioconductor-genega/meta.yaml index 1e812c0f99c18..ba96c236240f6 100644 --- a/recipes/bioconductor-genega/meta.yaml +++ b/recipes/bioconductor-genega/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e4fe3036db49cde6d708962fd1ed1739 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genegeneinter/meta.yaml b/recipes/bioconductor-genegeneinter/meta.yaml index fbe335bb23020..0552dbf30c19c 100644 --- a/recipes/bioconductor-genegeneinter/meta.yaml +++ b/recipes/bioconductor-genegeneinter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 31d000883a38923e0e8b964c92f73d40 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genelendatabase/meta.yaml b/recipes/bioconductor-genelendatabase/meta.yaml index 8e76dbf29cb25..ed4b3b6c0f944 100644 --- a/recipes/bioconductor-genelendatabase/meta.yaml +++ b/recipes/bioconductor-genelendatabase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 53df16996486e637bf7a98b5498525ff build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genelendatabase/post-link.sh b/recipes/bioconductor-genelendatabase/post-link.sh index 98b1ccd642d7f..9299220c2fd90 100644 --- a/recipes/bioconductor-genelendatabase/post-link.sh +++ b/recipes/bioconductor-genelendatabase/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/geneLenDataBase_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/geneLenDataBase_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-genelendatabase/bioconductor-genelendatabase_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-genelendatabase/bioconductor-genelendatabase_1.20.0_src_all.tar.gz" ) MD5="53df16996486e637bf7a98b5498525ff" diff --git a/recipes/bioconductor-genemeta/meta.yaml b/recipes/bioconductor-genemeta/meta.yaml index d07dd603952b0..5e88d72912488 100644 --- a/recipes/bioconductor-genemeta/meta.yaml +++ b/recipes/bioconductor-genemeta/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: edea7656bc37bd90cf806f5bffead15f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genenetworkbuilder/meta.yaml b/recipes/bioconductor-genenetworkbuilder/meta.yaml index 6c5765a3110ee..e3ac9c5d6866c 100644 --- a/recipes/bioconductor-genenetworkbuilder/meta.yaml +++ b/recipes/bioconductor-genenetworkbuilder/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.26.0" %} +{% set version = "1.26.1" %} {% set name = "GeneNetworkBuilder" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: a7c3a4d30cfa4fb7df90b203456c5497 + md5: 2368103d418be3c5f50cae8c80967cd1 build: number: 0 rpaths: diff --git a/recipes/bioconductor-geneoverlap/meta.yaml b/recipes/bioconductor-geneoverlap/meta.yaml index f86415b5bba11..d749cfd66164b 100644 --- a/recipes/bioconductor-geneoverlap/meta.yaml +++ b/recipes/bioconductor-geneoverlap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c16764bedae345b804a1178d788f2ce0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneplast.data.string.v91/meta.yaml b/recipes/bioconductor-geneplast.data.string.v91/meta.yaml index aea2e46c075e4..b35f12a19c858 100644 --- a/recipes/bioconductor-geneplast.data.string.v91/meta.yaml +++ b/recipes/bioconductor-geneplast.data.string.v91/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 86433f8489d9228c5ed73e2b75a55398 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneplast/meta.yaml b/recipes/bioconductor-geneplast/meta.yaml index 1800639081e76..78681ab3d2c7a 100644 --- a/recipes/bioconductor-geneplast/meta.yaml +++ b/recipes/bioconductor-geneplast/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.10.0" %} +{% set version = "1.10.3" %} {% set name = "geneplast" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 3430edc008f854a9b733136da225883b + md5: 0d89206caa35c9c0d8f7f91cf98f15c4 build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown +# Suggests: RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown, Fletcher2013b, geneplast.data.string.v91, ggplot2, ggpubr requirements: host: - r-ape diff --git a/recipes/bioconductor-geneplotter/meta.yaml b/recipes/bioconductor-geneplotter/meta.yaml index 233827497f8ff..81b3fa447966b 100644 --- a/recipes/bioconductor-geneplotter/meta.yaml +++ b/recipes/bioconductor-geneplotter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f682017835f9a7eeffa925eaac8f71f9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-generecommender/meta.yaml b/recipes/bioconductor-generecommender/meta.yaml index ada1d66c7ba12..a3154267e0a63 100644 --- a/recipes/bioconductor-generecommender/meta.yaml +++ b/recipes/bioconductor-generecommender/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3d86561defb5cdd99161a27b05877bab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-generegionscan/meta.yaml b/recipes/bioconductor-generegionscan/meta.yaml index 345b0cc2c25dd..3439124147af0 100644 --- a/recipes/bioconductor-generegionscan/meta.yaml +++ b/recipes/bioconductor-generegionscan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 68b83d6f500c10572e4d015ba84ccb66 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-generxcluster/meta.yaml b/recipes/bioconductor-generxcluster/meta.yaml index c437788e5cb37..7f5bb72c7e552 100644 --- a/recipes/bioconductor-generxcluster/meta.yaml +++ b/recipes/bioconductor-generxcluster/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8c38b2da8fef36460b58499de0326f98 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneselectmmd/meta.yaml b/recipes/bioconductor-geneselectmmd/meta.yaml index c15b2af846975..3c9f549e1f79a 100644 --- a/recipes/bioconductor-geneselectmmd/meta.yaml +++ b/recipes/bioconductor-geneselectmmd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d872e68b8285183d0d7ab04aa7233f22 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genesis/meta.yaml b/recipes/bioconductor-genesis/meta.yaml index 38b8bba984a56..2500c1be0e68d 100644 --- a/recipes/bioconductor-genesis/meta.yaml +++ b/recipes/bioconductor-genesis/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.14.0" %} +{% set version = "2.14.3" %} {% set name = "GENESIS" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: d2d7616788ab5d2621a7aa0fe65780d7 + md5: d4a86b91e3098ddedaf9c39fbfd8b9ab build: number: 0 rpaths: diff --git a/recipes/bioconductor-genestructuretools/meta.yaml b/recipes/bioconductor-genestructuretools/meta.yaml index 5406a72cbbe5f..62033e820a90c 100644 --- a/recipes/bioconductor-genestructuretools/meta.yaml +++ b/recipes/bioconductor-genestructuretools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 05cb8f5f2ca9b74c09c5633ff75050d9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genetclassifier/meta.yaml b/recipes/bioconductor-genetclassifier/meta.yaml index b792228fa69dc..51a2b779ee9f0 100644 --- a/recipes/bioconductor-genetclassifier/meta.yaml +++ b/recipes/bioconductor-genetclassifier/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 47c050a36340a35356171d886ccd9cf7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneticsdesign/meta.yaml b/recipes/bioconductor-geneticsdesign/meta.yaml index aa5030191f87f..455d3461021ce 100644 --- a/recipes/bioconductor-geneticsdesign/meta.yaml +++ b/recipes/bioconductor-geneticsdesign/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5219e9f8a29fe16b38de31f69c170236 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geneticsped/meta.yaml b/recipes/bioconductor-geneticsped/meta.yaml index fe5b0d115e287..f9ac9ead899e8 100644 --- a/recipes/bioconductor-geneticsped/meta.yaml +++ b/recipes/bioconductor-geneticsped/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bbe9e968038a3b327d34e53292cdbbd5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genextender/meta.yaml b/recipes/bioconductor-genextender/meta.yaml index eaba77d6c7a8c..f68a4d38d401a 100644 --- a/recipes/bioconductor-genextender/meta.yaml +++ b/recipes/bioconductor-genextender/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 450c027fe6c2ae4934dd24a8686e2236 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genie3/meta.yaml b/recipes/bioconductor-genie3/meta.yaml index 43f2b999e8f7a..ebbf1b318a565 100644 --- a/recipes/bioconductor-genie3/meta.yaml +++ b/recipes/bioconductor-genie3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 535e4bf9a25c52f26feb09ac5e790016 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genocn/meta.yaml b/recipes/bioconductor-genocn/meta.yaml index d748ac68eed11..4b6d2c4db4310 100644 --- a/recipes/bioconductor-genocn/meta.yaml +++ b/recipes/bioconductor-genocn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 90b9be077f52a563e6d3a046c3c8a6af build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genogam/meta.yaml b/recipes/bioconductor-genogam/meta.yaml index e03a6e97fc53e..e158e79554175 100644 --- a/recipes/bioconductor-genogam/meta.yaml +++ b/recipes/bioconductor-genogam/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 10eeda50dcae803a3fc0cffcce6eefad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomation/meta.yaml b/recipes/bioconductor-genomation/meta.yaml index 4c40eedcef42b..478ce9a32362e 100644 --- a/recipes/bioconductor-genomation/meta.yaml +++ b/recipes/bioconductor-genomation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a7ad497efb9e2fda03c6c37ce19eed8c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomationdata/meta.yaml b/recipes/bioconductor-genomationdata/meta.yaml index 8f7592de7fa31..2b5421c0767e8 100644 --- a/recipes/bioconductor-genomationdata/meta.yaml +++ b/recipes/bioconductor-genomationdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e9b054305d2ce85aeb1bca338eb07b66 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomationdata/post-link.sh b/recipes/bioconductor-genomationdata/post-link.sh index 6ad7d7899939b..ff435244b37df 100644 --- a/recipes/bioconductor-genomationdata/post-link.sh +++ b/recipes/bioconductor-genomationdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/genomationData_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/genomationData_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-genomationdata/bioconductor-genomationdata_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-genomationdata/bioconductor-genomationdata_1.16.0_src_all.tar.gz" ) MD5="e9b054305d2ce85aeb1bca338eb07b66" diff --git a/recipes/bioconductor-genomegraphs/meta.yaml b/recipes/bioconductor-genomegraphs/meta.yaml index 027ee231edd19..43c22b499e74c 100644 --- a/recipes/bioconductor-genomegraphs/meta.yaml +++ b/recipes/bioconductor-genomegraphs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 67809498b9dfae83aabac0bf220eb35f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomeinfodb/meta.yaml b/recipes/bioconductor-genomeinfodb/meta.yaml index ff934a4ba7475..f8debccbd8d25 100644 --- a/recipes/bioconductor-genomeinfodb/meta.yaml +++ b/recipes/bioconductor-genomeinfodb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cecf189c70fce6130d357c0a8c46eb01 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomeinfodbdata/meta.yaml b/recipes/bioconductor-genomeinfodbdata/meta.yaml index 39ae7e375d46e..01ad5cb3a0928 100644 --- a/recipes/bioconductor-genomeinfodbdata/meta.yaml +++ b/recipes/bioconductor-genomeinfodbdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2fd536521151e2ff37217b5cfee8cec4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomeinfodbdata/post-link.sh b/recipes/bioconductor-genomeinfodbdata/post-link.sh index 3275453cefde4..427e8d24d3552 100644 --- a/recipes/bioconductor-genomeinfodbdata/post-link.sh +++ b/recipes/bioconductor-genomeinfodbdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/GenomeInfoDbData_1.2.1.tar.gz" "https://bioarchive.galaxyproject.org/GenomeInfoDbData_1.2.1.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-genomeinfodbdata/bioconductor-genomeinfodbdata_1.2.1_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-genomeinfodbdata/bioconductor-genomeinfodbdata_1.2.1_src_all.tar.gz" ) MD5="2fd536521151e2ff37217b5cfee8cec4" diff --git a/recipes/bioconductor-genomeintervals/meta.yaml b/recipes/bioconductor-genomeintervals/meta.yaml index c207458c1f8fb..4196daeff5bc2 100644 --- a/recipes/bioconductor-genomeintervals/meta.yaml +++ b/recipes/bioconductor-genomeintervals/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 43bb686102c90ce961b0b6351e0e3589 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomes/meta.yaml b/recipes/bioconductor-genomes/meta.yaml index a55f4d23dc9bc..10431cc4395fd 100644 --- a/recipes/bioconductor-genomes/meta.yaml +++ b/recipes/bioconductor-genomes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a077a69631cbe6acd0cd2e691c7cae06 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomewidesnp5crlmm/meta.yaml b/recipes/bioconductor-genomewidesnp5crlmm/meta.yaml index c1dba211cf865..bd68d0f2d6a0f 100644 --- a/recipes/bioconductor-genomewidesnp5crlmm/meta.yaml +++ b/recipes/bioconductor-genomewidesnp5crlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cc24140cd17758b8e09f4fe6c931526a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomewidesnp6crlmm/meta.yaml b/recipes/bioconductor-genomewidesnp6crlmm/meta.yaml index 5f556fe7315df..78df063c04cc1 100644 --- a/recipes/bioconductor-genomewidesnp6crlmm/meta.yaml +++ b/recipes/bioconductor-genomewidesnp6crlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 13dd5aef3d814524896f2f3013beb78b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomicalignments/meta.yaml b/recipes/bioconductor-genomicalignments/meta.yaml index d14a204d4e904..e3832f6c0bfe7 100644 --- a/recipes/bioconductor-genomicalignments/meta.yaml +++ b/recipes/bioconductor-genomicalignments/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.20.0" %} +{% set version = "1.20.1" %} {% set name = "GenomicAlignments" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 2db1b0e1295c63bca03ea88183210c80 + md5: dd8feb48156b562146ea74b699432d1b build: number: 0 rpaths: diff --git a/recipes/bioconductor-genomicdatacommons/meta.yaml b/recipes/bioconductor-genomicdatacommons/meta.yaml index 573e9a8dfb08f..bab482cf92f2b 100644 --- a/recipes/bioconductor-genomicdatacommons/meta.yaml +++ b/recipes/bioconductor-genomicdatacommons/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7a1b67231b1ccc299aa857334cc6b8fb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomicfeatures/meta.yaml b/recipes/bioconductor-genomicfeatures/meta.yaml index 45120bd1fae3a..70e6b811486f8 100644 --- a/recipes/bioconductor-genomicfeatures/meta.yaml +++ b/recipes/bioconductor-genomicfeatures/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.36.0" %} +{% set version = "1.36.4" %} {% set name = "GenomicFeatures" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 2ad51098b8d4532a76224a93cf862657 + md5: 863880059ab7513c986cea6c5eea669d build: number: 0 rpaths: diff --git a/recipes/bioconductor-genomicfiles/meta.yaml b/recipes/bioconductor-genomicfiles/meta.yaml index 3028155aa588d..fb1d539fba407 100644 --- a/recipes/bioconductor-genomicfiles/meta.yaml +++ b/recipes/bioconductor-genomicfiles/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 315822cd8b9c8a8be88deb9aebf37e56 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomicinteractions/meta.yaml b/recipes/bioconductor-genomicinteractions/meta.yaml index 1c4d2609fd060..173d983dfe42b 100644 --- a/recipes/bioconductor-genomicinteractions/meta.yaml +++ b/recipes/bioconductor-genomicinteractions/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e3c3434c6842987b4e120331c50d2f38 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomicranges/meta.yaml b/recipes/bioconductor-genomicranges/meta.yaml index 526c928942de2..a3b6539c5a6d2 100644 --- a/recipes/bioconductor-genomicranges/meta.yaml +++ b/recipes/bioconductor-genomicranges/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3b37cea5d6fcdef3ed57e80cdd7dc5b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genomicscores/meta.yaml b/recipes/bioconductor-genomicscores/meta.yaml index 30ab2a0b9aa4c..f55b825358e37 100644 --- a/recipes/bioconductor-genomicscores/meta.yaml +++ b/recipes/bioconductor-genomicscores/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} {% set name = "GenomicScores" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: c030f1bdb93d85cecc0b039cc07462df + md5: 38d1e0f6d4972ea49776b64b4973c22b build: number: 0 rpaths: diff --git a/recipes/bioconductor-genomictuples/meta.yaml b/recipes/bioconductor-genomictuples/meta.yaml index b8b5b06dec510..3beb5fd2b3f35 100644 --- a/recipes/bioconductor-genomictuples/meta.yaml +++ b/recipes/bioconductor-genomictuples/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 31d317d5a9fcdcea3e3f3944e8cd9a6e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genominator/meta.yaml b/recipes/bioconductor-genominator/meta.yaml index cd13d599de298..40a503691ec03 100644 --- a/recipes/bioconductor-genominator/meta.yaml +++ b/recipes/bioconductor-genominator/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3d84c0c525066a75bba4249dc5676d07 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genoset/meta.yaml b/recipes/bioconductor-genoset/meta.yaml index f7f6b4d8602bc..001aa80344ea8 100644 --- a/recipes/bioconductor-genoset/meta.yaml +++ b/recipes/bioconductor-genoset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9c639a14b97c90b50581c7c44fa2575e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genotypeeval/meta.yaml b/recipes/bioconductor-genotypeeval/meta.yaml index 45a2fe67a2abc..40848bf07b7e8 100644 --- a/recipes/bioconductor-genotypeeval/meta.yaml +++ b/recipes/bioconductor-genotypeeval/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5f5c8d95fb9dd6fa0487c43c400d5515 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genphen/meta.yaml b/recipes/bioconductor-genphen/meta.yaml index 26a01aa5bacea..7b758992965aa 100644 --- a/recipes/bioconductor-genphen/meta.yaml +++ b/recipes/bioconductor-genphen/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 639411d203a20fcf40382048173545e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genrank/meta.yaml b/recipes/bioconductor-genrank/meta.yaml index 5c796cd7cd82b..7972ea0d9f5d0 100644 --- a/recipes/bioconductor-genrank/meta.yaml +++ b/recipes/bioconductor-genrank/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dad9e212df456a6ccd2c25ca658ec132 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-genvisr/meta.yaml b/recipes/bioconductor-genvisr/meta.yaml index 7d29994d3bbe2..7729890b7a483 100644 --- a/recipes/bioconductor-genvisr/meta.yaml +++ b/recipes/bioconductor-genvisr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 742fdff945254b0cc3f72e99d46065e1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geometadb/meta.yaml b/recipes/bioconductor-geometadb/meta.yaml index 09defaa5e0b87..05ae1f38db55d 100644 --- a/recipes/bioconductor-geometadb/meta.yaml +++ b/recipes/bioconductor-geometadb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f6d5d27fe6addf6f4daf72b82372b8ad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geoquery/meta.yaml b/recipes/bioconductor-geoquery/meta.yaml index ec97ca99fbe97..d67141d3ffd0e 100644 --- a/recipes/bioconductor-geoquery/meta.yaml +++ b/recipes/bioconductor-geoquery/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ab0f2d2a69f1cbd845ab7cbe225c3ba9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geosubmission/meta.yaml b/recipes/bioconductor-geosubmission/meta.yaml index b1735db6aadc0..50729dbff484a 100644 --- a/recipes/bioconductor-geosubmission/meta.yaml +++ b/recipes/bioconductor-geosubmission/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4bc67c34e3a62253a1b0e79e6cc915e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gep2pep/meta.yaml b/recipes/bioconductor-gep2pep/meta.yaml index 84d233ea9ac44..e2dbf8197e232 100644 --- a/recipes/bioconductor-gep2pep/meta.yaml +++ b/recipes/bioconductor-gep2pep/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d4bdd65369f474f7b3d17ac060fc0347 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gesper/meta.yaml b/recipes/bioconductor-gesper/meta.yaml index 67179b305f12c..eb6c60b575866 100644 --- a/recipes/bioconductor-gesper/meta.yaml +++ b/recipes/bioconductor-gesper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d2b3ea34d9d1c043f889a02fb111451b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geuvadistranscriptexpr/meta.yaml b/recipes/bioconductor-geuvadistranscriptexpr/meta.yaml index 076fe501abf68..8aa1dd8c80f52 100644 --- a/recipes/bioconductor-geuvadistranscriptexpr/meta.yaml +++ b/recipes/bioconductor-geuvadistranscriptexpr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ece1f0f2d431b75bca527b79f319c9a0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geuvadistranscriptexpr/post-link.sh b/recipes/bioconductor-geuvadistranscriptexpr/post-link.sh index 2c3f0f3cd141f..4dead7c033c80 100644 --- a/recipes/bioconductor-geuvadistranscriptexpr/post-link.sh +++ b/recipes/bioconductor-geuvadistranscriptexpr/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/GeuvadisTranscriptExpr_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/GeuvadisTranscriptExpr_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-geuvadistranscriptexpr/bioconductor-geuvadistranscriptexpr_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-geuvadistranscriptexpr/bioconductor-geuvadistranscriptexpr_1.12.0_src_all.tar.gz" ) MD5="ece1f0f2d431b75bca527b79f319c9a0" diff --git a/recipes/bioconductor-geuvpack/meta.yaml b/recipes/bioconductor-geuvpack/meta.yaml index 6c72bbb8629b7..e8f07d690c912 100644 --- a/recipes/bioconductor-geuvpack/meta.yaml +++ b/recipes/bioconductor-geuvpack/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ab9980646eee0afbfb64f8009fc0862e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geuvpack/post-link.sh b/recipes/bioconductor-geuvpack/post-link.sh index 869b1ff9d8557..27aad59a90a0f 100644 --- a/recipes/bioconductor-geuvpack/post-link.sh +++ b/recipes/bioconductor-geuvpack/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/geuvPack_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/geuvPack_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-geuvpack/bioconductor-geuvpack_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-geuvpack/bioconductor-geuvpack_1.16.0_src_all.tar.gz" ) MD5="ab9980646eee0afbfb64f8009fc0862e" diff --git a/recipes/bioconductor-geuvstore2/meta.yaml b/recipes/bioconductor-geuvstore2/meta.yaml index bb99454f2c3d0..a385d939d382f 100644 --- a/recipes/bioconductor-geuvstore2/meta.yaml +++ b/recipes/bioconductor-geuvstore2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ca0b70a5e2a1b47dd19f9e9566dc8411 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-geuvstore2/post-link.sh b/recipes/bioconductor-geuvstore2/post-link.sh index 4e7d956324fa5..675658efd87df 100644 --- a/recipes/bioconductor-geuvstore2/post-link.sh +++ b/recipes/bioconductor-geuvstore2/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/geuvStore2_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/geuvStore2_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-geuvstore2/bioconductor-geuvstore2_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-geuvstore2/bioconductor-geuvstore2_1.14.0_src_all.tar.gz" ) MD5="ca0b70a5e2a1b47dd19f9e9566dc8411" diff --git a/recipes/bioconductor-gewist/meta.yaml b/recipes/bioconductor-gewist/meta.yaml index 4ad5fbaeac5e2..8d7ec6febdf45 100644 --- a/recipes/bioconductor-gewist/meta.yaml +++ b/recipes/bioconductor-gewist/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eed2a055a18ee166af153d06ca0410ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ggbase/meta.yaml b/recipes/bioconductor-ggbase/meta.yaml index d536687fc9ec4..e082c0701814e 100644 --- a/recipes/bioconductor-ggbase/meta.yaml +++ b/recipes/bioconductor-ggbase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 40c2bc7b7cb9bfdb3fca63e092e29888 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ggbio/meta.yaml b/recipes/bioconductor-ggbio/meta.yaml index 32050b340b5fd..a0b9e6e558318 100644 --- a/recipes/bioconductor-ggbio/meta.yaml +++ b/recipes/bioconductor-ggbio/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5ee3dd6b46d554ca569c2b9dc71e429d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ggcyto/meta.yaml b/recipes/bioconductor-ggcyto/meta.yaml index b56cca3099f67..0df426986b6ab 100644 --- a/recipes/bioconductor-ggcyto/meta.yaml +++ b/recipes/bioconductor-ggcyto/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4c9443a3bbee4ff09ef9b8e413b40328 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ggdata/meta.yaml b/recipes/bioconductor-ggdata/meta.yaml index 843405a2882f9..a38076728aa26 100644 --- a/recipes/bioconductor-ggdata/meta.yaml +++ b/recipes/bioconductor-ggdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: afba50713e07d019b729a86fda04580e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ggdata/post-link.sh b/recipes/bioconductor-ggdata/post-link.sh index 91831c7a0580b..ad6e5b2f03d03 100644 --- a/recipes/bioconductor-ggdata/post-link.sh +++ b/recipes/bioconductor-ggdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/GGdata_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/GGdata_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ggdata/bioconductor-ggdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ggdata/bioconductor-ggdata_1.22.0_src_all.tar.gz" ) MD5="afba50713e07d019b729a86fda04580e" diff --git a/recipes/bioconductor-gghumanmethcancerpanelv1.db/meta.yaml b/recipes/bioconductor-gghumanmethcancerpanelv1.db/meta.yaml index b8ca1c123352d..8ac07c6d8bec1 100644 --- a/recipes/bioconductor-gghumanmethcancerpanelv1.db/meta.yaml +++ b/recipes/bioconductor-gghumanmethcancerpanelv1.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e8f4a37182b175fb33dd54f8093e6f52 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ggtools/meta.yaml b/recipes/bioconductor-ggtools/meta.yaml index 3af6d97a86bb2..b359aa4bd18a9 100644 --- a/recipes/bioconductor-ggtools/meta.yaml +++ b/recipes/bioconductor-ggtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b54d30694006d2f291c7b717a39c56d3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -28,7 +28,7 @@ requirements: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-ggbase >=3.46.0,<3.47.0' - 'bioconductor-gviz >=1.28.0,<1.29.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' @@ -54,7 +54,7 @@ requirements: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-ggbase >=3.46.0,<3.47.0' - 'bioconductor-gviz >=1.28.0,<1.29.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' diff --git a/recipes/bioconductor-ggtree/meta.yaml b/recipes/bioconductor-ggtree/meta.yaml index 56562b7adc642..1005ea0df194c 100644 --- a/recipes/bioconductor-ggtree/meta.yaml +++ b/recipes/bioconductor-ggtree/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.16.0" %} +{% set version = "1.16.3" %} {% set name = "ggtree" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 82f310db99b36c69f5118195d6a37596 + md5: 6e949fb51d7a38df10669612475e4939 build: number: 0 rpaths: diff --git a/recipes/bioconductor-gigsea/meta.yaml b/recipes/bioconductor-gigsea/meta.yaml index 8b4ebc2a46bb3..343063c73350e 100644 --- a/recipes/bioconductor-gigsea/meta.yaml +++ b/recipes/bioconductor-gigsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 722ecfa98d287f8380af786f160492f9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gigseadata/meta.yaml b/recipes/bioconductor-gigseadata/meta.yaml index 4ac57b022fbc3..664e7eb4215a7 100644 --- a/recipes/bioconductor-gigseadata/meta.yaml +++ b/recipes/bioconductor-gigseadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9179864b9233f0010eb2f0fb58317ae5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gigseadata/post-link.sh b/recipes/bioconductor-gigseadata/post-link.sh index 6cb9258f48ea5..065eda0200e9f 100644 --- a/recipes/bioconductor-gigseadata/post-link.sh +++ b/recipes/bioconductor-gigseadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/GIGSEAdata_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/GIGSEAdata_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gigseadata/bioconductor-gigseadata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gigseadata/bioconductor-gigseadata_1.2.0_src_all.tar.gz" ) MD5="9179864b9233f0010eb2f0fb58317ae5" diff --git a/recipes/bioconductor-girafe/meta.yaml b/recipes/bioconductor-girafe/meta.yaml index a704d35f7ff5c..e9b60e7c2bbdb 100644 --- a/recipes/bioconductor-girafe/meta.yaml +++ b/recipes/bioconductor-girafe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: da9585bea6624a78478137c4ccb901c1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gispa/meta.yaml b/recipes/bioconductor-gispa/meta.yaml index 7ea719713018a..e34faec4e032b 100644 --- a/recipes/bioconductor-gispa/meta.yaml +++ b/recipes/bioconductor-gispa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 375f9485d8ba68a0267fa3d38fcaba0f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-glad/meta.yaml b/recipes/bioconductor-glad/meta.yaml index 463ac6d9937c3..785e803a4b985 100644 --- a/recipes/bioconductor-glad/meta.yaml +++ b/recipes/bioconductor-glad/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3f5b35a21a75186227d262647b59f35b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gladiatox/meta.yaml b/recipes/bioconductor-gladiatox/meta.yaml index 514cd73afba09..481d1e703edb5 100644 --- a/recipes/bioconductor-gladiatox/meta.yaml +++ b/recipes/bioconductor-gladiatox/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bd7ad2050bd0e42d250712d6d72be21f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-glimma/meta.yaml b/recipes/bioconductor-glimma/meta.yaml index 1ff7d6ac27247..ffad2212ac1e5 100644 --- a/recipes/bioconductor-glimma/meta.yaml +++ b/recipes/bioconductor-glimma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8fe9db52a5ebc432f8cab7071d33a14d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-glmsparsenet/meta.yaml b/recipes/bioconductor-glmsparsenet/meta.yaml index 103bb9d8dc882..b1cce09407d7b 100644 --- a/recipes/bioconductor-glmsparsenet/meta.yaml +++ b/recipes/bioconductor-glmsparsenet/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.1.2" %} +{% set version = "1.2.0" %} {% set name = "glmSparseNet" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 1c15c6b25738dd2382996f65c9385a39 + md5: 817ed7ae4523b36a77614b93c9bdf173 build: number: 0 rpaths: @@ -30,7 +30,7 @@ requirements: - r-futile.logger - r-ggplot2 - r-glmnet - - r-loose.rock + - 'r-loose.rock >=1.0.12' - r-matrix - r-readr - r-reshape2 @@ -50,7 +50,7 @@ requirements: - r-futile.logger - r-ggplot2 - r-glmnet - - r-loose.rock + - 'r-loose.rock >=1.0.12' - r-matrix - r-readr - r-reshape2 diff --git a/recipes/bioconductor-globalancova/meta.yaml b/recipes/bioconductor-globalancova/meta.yaml index c2b973257efc2..becf2fbe997be 100644 --- a/recipes/bioconductor-globalancova/meta.yaml +++ b/recipes/bioconductor-globalancova/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 24e42662d9e3fd5eea193bad02300c8f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-globalseq/meta.yaml b/recipes/bioconductor-globalseq/meta.yaml index cc1536873bbba..1cb2535ec4b90 100644 --- a/recipes/bioconductor-globalseq/meta.yaml +++ b/recipes/bioconductor-globalseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0052e28fb11a8c9575baa1a55b4a3b74 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-globaltest/meta.yaml b/recipes/bioconductor-globaltest/meta.yaml index 2889153bad05a..c1177ffdc1cbb 100644 --- a/recipes/bioconductor-globaltest/meta.yaml +++ b/recipes/bioconductor-globaltest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a93ffe229a13c2b8ae1e0bfab3ae7088 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gmapr/build.sh b/recipes/bioconductor-gmapr/build.sh index c1d13421f5f1e..66c9e80b86719 100644 --- a/recipes/bioconductor-gmapr/build.sh +++ b/recipes/bioconductor-gmapr/build.sh @@ -8,4 +8,7 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +if [[ "$OSTYPE" == "darwin"* ]]; then + sed -i.bak 's/gmapR.so/gmapR.dylib/' src/Makefile +fi +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-gmapr/meta.yaml b/recipes/bioconductor-gmapr/meta.yaml index bfd53924ce3c1..39f982cd272b0 100644 --- a/recipes/bioconductor-gmapr/meta.yaml +++ b/recipes/bioconductor-gmapr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f7730c3b5581e3ce7b4ef1b3093ba1ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gmrp/meta.yaml b/recipes/bioconductor-gmrp/meta.yaml index 9eb169f6b53d5..8147ed3528584 100644 --- a/recipes/bioconductor-gmrp/meta.yaml +++ b/recipes/bioconductor-gmrp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e11678c64a96380d6c9e45e55d4625a8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gnet2/meta.yaml b/recipes/bioconductor-gnet2/meta.yaml index 6e48719b4f613..cf9f078322cea 100644 --- a/recipes/bioconductor-gnet2/meta.yaml +++ b/recipes/bioconductor-gnet2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2bf1f758fca46085479a0bde5375fc15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-go.db/meta.yaml b/recipes/bioconductor-go.db/meta.yaml index ca2a4ac0b0c70..7a4e6ac178088 100644 --- a/recipes/bioconductor-go.db/meta.yaml +++ b/recipes/bioconductor-go.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 63669b6fceef7ba0d6a2c36b7d8cf796 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-go.db/post-link.sh b/recipes/bioconductor-go.db/post-link.sh index 75539cf062ba9..c09df08325602 100644 --- a/recipes/bioconductor-go.db/post-link.sh +++ b/recipes/bioconductor-go.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/GO.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/GO.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-go.db/bioconductor-go.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-go.db/bioconductor-go.db_3.8.2_src_all.tar.gz" ) MD5="63669b6fceef7ba0d6a2c36b7d8cf796" diff --git a/recipes/bioconductor-goexpress/meta.yaml b/recipes/bioconductor-goexpress/meta.yaml index cb1c18e5c6329..2a2ebafe32846 100644 --- a/recipes/bioconductor-goexpress/meta.yaml +++ b/recipes/bioconductor-goexpress/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 629c508e879921a4a5e8e8a77f8d0bd6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gofuncr/meta.yaml b/recipes/bioconductor-gofuncr/meta.yaml index 3bd2166d1bb93..acc8f04278087 100644 --- a/recipes/bioconductor-gofuncr/meta.yaml +++ b/recipes/bioconductor-gofuncr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 74726fe990476fa6b666cf2b5bb9eba4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gofunction/meta.yaml b/recipes/bioconductor-gofunction/meta.yaml index ddf3896d74880..ee464b4193f9e 100644 --- a/recipes/bioconductor-gofunction/meta.yaml +++ b/recipes/bioconductor-gofunction/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2c06746ecbd128cf9b3015f1b02562e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-golubesets/meta.yaml b/recipes/bioconductor-golubesets/meta.yaml index 4bcfb87ea46fd..d26833bcd970c 100644 --- a/recipes/bioconductor-golubesets/meta.yaml +++ b/recipes/bioconductor-golubesets/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3e7e78f951be8c6542fd6de61eabd92e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-golubesets/post-link.sh b/recipes/bioconductor-golubesets/post-link.sh index 36839d8027073..2e8669e12a25b 100644 --- a/recipes/bioconductor-golubesets/post-link.sh +++ b/recipes/bioconductor-golubesets/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/golubEsets_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/golubEsets_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-golubesets/bioconductor-golubesets_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-golubesets/bioconductor-golubesets_1.26.0_src_all.tar.gz" ) MD5="3e7e78f951be8c6542fd6de61eabd92e" diff --git a/recipes/bioconductor-gopro/meta.yaml b/recipes/bioconductor-gopro/meta.yaml index 58da93836e16b..5658d04c39875 100644 --- a/recipes/bioconductor-gopro/meta.yaml +++ b/recipes/bioconductor-gopro/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 32d15cff75940d97854d32a844fa5fdb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-goprofiles/meta.yaml b/recipes/bioconductor-goprofiles/meta.yaml index 7f0a95fd303e8..f971b207f06bd 100644 --- a/recipes/bioconductor-goprofiles/meta.yaml +++ b/recipes/bioconductor-goprofiles/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd64c57600d8c94f0e32f8dd51e0f2f3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gosemsim/meta.yaml b/recipes/bioconductor-gosemsim/meta.yaml index 3e414a59927de..524bd49a65020 100644 --- a/recipes/bioconductor-gosemsim/meta.yaml +++ b/recipes/bioconductor-gosemsim/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7c3863de574a9827b66b3fec462ae4d8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-goseq/meta.yaml b/recipes/bioconductor-goseq/meta.yaml index f0869e33d48db..801e67174f695 100644 --- a/recipes/bioconductor-goseq/meta.yaml +++ b/recipes/bioconductor-goseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4d129450dfb15d6d4c0dfaad38049082 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gosim/meta.yaml b/recipes/bioconductor-gosim/meta.yaml index eaa75c24ce5a0..9b8c5335dcf89 100644 --- a/recipes/bioconductor-gosim/meta.yaml +++ b/recipes/bioconductor-gosim/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a40a2a17bb04a80fa603731be6cc7874 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gostag/meta.yaml b/recipes/bioconductor-gostag/meta.yaml index 116c314be3a17..5d3a99009af31 100644 --- a/recipes/bioconductor-gostag/meta.yaml +++ b/recipes/bioconductor-gostag/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9cc1c101e786c4d899963065072348c0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gostats/meta.yaml b/recipes/bioconductor-gostats/meta.yaml index e793569efc3ad..616fac40d8fec 100644 --- a/recipes/bioconductor-gostats/meta.yaml +++ b/recipes/bioconductor-gostats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 18ba9b92fb8f33ed241d15ea0a6c8b06 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gosummaries/meta.yaml b/recipes/bioconductor-gosummaries/meta.yaml index 252288e719c07..d857451bbb09a 100644 --- a/recipes/bioconductor-gosummaries/meta.yaml +++ b/recipes/bioconductor-gosummaries/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 58fda5df6b523c4d578e9fdc3ae05ee1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gothic/meta.yaml b/recipes/bioconductor-gothic/meta.yaml index 9123e56294987..65b66d8c7d026 100644 --- a/recipes/bioconductor-gothic/meta.yaml +++ b/recipes/bioconductor-gothic/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.19.0" %} +{% set version = "1.20.6" %} {% set name = "GOTHiC" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 83bc5e03acace1872290c6c134ca2014 + md5: d330a36156c60c46f952b1b63aa69a52 build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: HiCDataLymphoblast +# Suggests: HiCDataLymphoblast, parallel requirements: host: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' @@ -30,6 +30,7 @@ requirements: - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - 'bioconductor-shortread >=1.42.0,<1.43.0' - r-base + - r-biocmanager - r-data.table - r-ggplot2 run: @@ -43,6 +44,7 @@ requirements: - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - 'bioconductor-shortread >=1.42.0,<1.43.0' - r-base + - r-biocmanager - r-data.table - r-ggplot2 test: diff --git a/recipes/bioconductor-gotools/meta.yaml b/recipes/bioconductor-gotools/meta.yaml index 6379d7387978e..1557085cec74a 100644 --- a/recipes/bioconductor-gotools/meta.yaml +++ b/recipes/bioconductor-gotools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e2d72bfb02d9979dfeef7e6bc5d17c65 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gp53cdf/meta.yaml b/recipes/bioconductor-gp53cdf/meta.yaml index f8ebc247e57c6..4d58bda143ff7 100644 --- a/recipes/bioconductor-gp53cdf/meta.yaml +++ b/recipes/bioconductor-gp53cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2887dd15d3fa29b5c13b068c8d641f61 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gpart/meta.yaml b/recipes/bioconductor-gpart/meta.yaml index 0489ddd85f269..28f8674a6faf7 100644 --- a/recipes/bioconductor-gpart/meta.yaml +++ b/recipes/bioconductor-gpart/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1331072984139386a31e1218ad5d5203 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,7 +22,7 @@ requirements: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-biomart >=2.40.0,<2.41.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-organismdbi >=1.26.0,<1.27.0' - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.4.0,<3.5.0' @@ -34,7 +34,7 @@ requirements: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-biomart >=2.40.0,<2.41.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-organismdbi >=1.26.0,<1.27.0' - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.4.0,<3.5.0' diff --git a/recipes/bioconductor-gpls/meta.yaml b/recipes/bioconductor-gpls/meta.yaml index 90e009b752a4f..9dd45c80b5c62 100644 --- a/recipes/bioconductor-gpls/meta.yaml +++ b/recipes/bioconductor-gpls/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 13093d7b8ea0811da3ff37cb5f332ac3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gprege/meta.yaml b/recipes/bioconductor-gprege/meta.yaml index 9cddf5fe60088..35080240d4821 100644 --- a/recipes/bioconductor-gprege/meta.yaml +++ b/recipes/bioconductor-gprege/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9c0b44c318ff09818ff49a50e0fee651 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gqtlbase/meta.yaml b/recipes/bioconductor-gqtlbase/meta.yaml index 3cba63d905ebe..92c0d4a1930bf 100644 --- a/recipes/bioconductor-gqtlbase/meta.yaml +++ b/recipes/bioconductor-gqtlbase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 73e850aa5a1ff008660ac575a99e8006 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gqtlstats/meta.yaml b/recipes/bioconductor-gqtlstats/meta.yaml index ce164e51b9cdf..1aac59ec48963 100644 --- a/recipes/bioconductor-gqtlstats/meta.yaml +++ b/recipes/bioconductor-gqtlstats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ebda0ef678142318e1aa07668efea57f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -29,7 +29,7 @@ requirements: - 'bioconductor-genomicfiles >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-gqtlbase >=1.16.0,<1.17.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' @@ -61,7 +61,7 @@ requirements: - 'bioconductor-genomicfiles >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-gqtlbase >=1.16.0,<1.17.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' diff --git a/recipes/bioconductor-graper/meta.yaml b/recipes/bioconductor-graper/meta.yaml index 9c1d8020c254f..01b7c145111b3 100644 --- a/recipes/bioconductor-graper/meta.yaml +++ b/recipes/bioconductor-graper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3cf8669879141e500e5f69ec7004637b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-graph/meta.yaml b/recipes/bioconductor-graph/meta.yaml index 72f9b03f8a193..577da07452cf3 100644 --- a/recipes/bioconductor-graph/meta.yaml +++ b/recipes/bioconductor-graph/meta.yaml @@ -11,8 +11,10 @@ source: - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5b665791d49e3e87757e6f0cf1c27acf + patches: + - Makevars.patch build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-graphalignment/meta.yaml b/recipes/bioconductor-graphalignment/meta.yaml index b670cf85964b3..794a50c316e7c 100644 --- a/recipes/bioconductor-graphalignment/meta.yaml +++ b/recipes/bioconductor-graphalignment/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7001972152fb1cd966f873d62f6100ff build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-graphat/meta.yaml b/recipes/bioconductor-graphat/meta.yaml index 7f166dc2b2b0a..8cf7c515d4dbb 100644 --- a/recipes/bioconductor-graphat/meta.yaml +++ b/recipes/bioconductor-graphat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1cb0ccafa1dc19eda5c0dd9c628df925 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-graphite/meta.yaml b/recipes/bioconductor-graphite/meta.yaml index 3df5a8f0ca1a2..592f09d81b0cf 100644 --- a/recipes/bioconductor-graphite/meta.yaml +++ b/recipes/bioconductor-graphite/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 559dbd9b8368b238afaa3784083fb4dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-graphpac/meta.yaml b/recipes/bioconductor-graphpac/meta.yaml index 7eae07d7123e7..47ae95ab85daa 100644 --- a/recipes/bioconductor-graphpac/meta.yaml +++ b/recipes/bioconductor-graphpac/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9b4dbec7c57284685df2391f3d95e8c0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-grasp2db/meta.yaml b/recipes/bioconductor-grasp2db/meta.yaml index 3f2b663d691d7..f61ba80a04af8 100644 --- a/recipes/bioconductor-grasp2db/meta.yaml +++ b/recipes/bioconductor-grasp2db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3fc90fc7c99e7da51dcbb687fd2d5515 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-greengenes13.5mgdb/meta.yaml b/recipes/bioconductor-greengenes13.5mgdb/meta.yaml index 25041777efad6..12076a31b7038 100644 --- a/recipes/bioconductor-greengenes13.5mgdb/meta.yaml +++ b/recipes/bioconductor-greengenes13.5mgdb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c06d8d5b702636bb5fb3e6229869578c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-grenits/meta.yaml b/recipes/bioconductor-grenits/meta.yaml index 58f28f83aa011..09b2319127007 100644 --- a/recipes/bioconductor-grenits/meta.yaml +++ b/recipes/bioconductor-grenits/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 92261713a716c49379d2ee4b6e2c6308 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-greylistchip/meta.yaml b/recipes/bioconductor-greylistchip/meta.yaml index 875b3b188a057..cea13867d49d3 100644 --- a/recipes/bioconductor-greylistchip/meta.yaml +++ b/recipes/bioconductor-greylistchip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c0294f8e0ec2b37ace8520022cc71000 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-grmetrics/meta.yaml b/recipes/bioconductor-grmetrics/meta.yaml index 612ad8765fc1a..fb4c05b8eb826 100644 --- a/recipes/bioconductor-grmetrics/meta.yaml +++ b/recipes/bioconductor-grmetrics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 30fe04b3ef445896e2551fcc7ba75eaa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-grndata/meta.yaml b/recipes/bioconductor-grndata/meta.yaml index be9ae9ac49245..ee417803083a9 100644 --- a/recipes/bioconductor-grndata/meta.yaml +++ b/recipes/bioconductor-grndata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f68d2293bf9ad882ff9f061266f63fd1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-grndata/post-link.sh b/recipes/bioconductor-grndata/post-link.sh index 6e024cbebfb5f..8169de1df12ea 100644 --- a/recipes/bioconductor-grndata/post-link.sh +++ b/recipes/bioconductor-grndata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/grndata_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/grndata_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-grndata/bioconductor-grndata_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-grndata/bioconductor-grndata_1.16.0_src_all.tar.gz" ) MD5="f68d2293bf9ad882ff9f061266f63fd1" diff --git a/recipes/bioconductor-grohmm/meta.yaml b/recipes/bioconductor-grohmm/meta.yaml index 057ccb38c8835..9cede893169ad 100644 --- a/recipes/bioconductor-grohmm/meta.yaml +++ b/recipes/bioconductor-grohmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8983dcbac6cd3cf84433640e07ea4207 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-grridge/meta.yaml b/recipes/bioconductor-grridge/meta.yaml index 398aaaf4885e5..091afed404a3b 100644 --- a/recipes/bioconductor-grridge/meta.yaml +++ b/recipes/bioconductor-grridge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 15d439eaf17d228970bce90e32c35825 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsalightning/meta.yaml b/recipes/bioconductor-gsalightning/meta.yaml index 0021e22322b12..28b9acba9419d 100644 --- a/recipes/bioconductor-gsalightning/meta.yaml +++ b/recipes/bioconductor-gsalightning/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 88df9d921afbca1265815c27f4f4532b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsar/meta.yaml b/recipes/bioconductor-gsar/meta.yaml index 2da9bf431b8ce..e314f839644f9 100644 --- a/recipes/bioconductor-gsar/meta.yaml +++ b/recipes/bioconductor-gsar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f53c56d21969b346b9ddd9da63bb45c0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsbenchmark/meta.yaml b/recipes/bioconductor-gsbenchmark/meta.yaml index 5f2629567c676..83baf807f1a7b 100644 --- a/recipes/bioconductor-gsbenchmark/meta.yaml +++ b/recipes/bioconductor-gsbenchmark/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a59a7b4328531cb827db30a0cabe0c5f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsbenchmark/post-link.sh b/recipes/bioconductor-gsbenchmark/post-link.sh index ac84063b34e4f..01b36e9445082 100644 --- a/recipes/bioconductor-gsbenchmark/post-link.sh +++ b/recipes/bioconductor-gsbenchmark/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/GSBenchMark_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/GSBenchMark_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gsbenchmark/bioconductor-gsbenchmark_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gsbenchmark/bioconductor-gsbenchmark_1.4.0_src_all.tar.gz" ) MD5="a59a7b4328531cb827db30a0cabe0c5f" diff --git a/recipes/bioconductor-gsca/meta.yaml b/recipes/bioconductor-gsca/meta.yaml index 6a17d5aef044f..4375eea3d06ef 100644 --- a/recipes/bioconductor-gsca/meta.yaml +++ b/recipes/bioconductor-gsca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ff07dab7380213bff28935f8f9d362b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gse62944/meta.yaml b/recipes/bioconductor-gse62944/meta.yaml index f5f05108b688b..1d05a64eca854 100644 --- a/recipes/bioconductor-gse62944/meta.yaml +++ b/recipes/bioconductor-gse62944/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 817f3700ad4889d79e78336b42bd802b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gse62944/post-link.sh b/recipes/bioconductor-gse62944/post-link.sh index 10eb305aeacf2..b4d6ff7dcf45b 100644 --- a/recipes/bioconductor-gse62944/post-link.sh +++ b/recipes/bioconductor-gse62944/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/GSE62944_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/GSE62944_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gse62944/bioconductor-gse62944_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gse62944/bioconductor-gse62944_1.12.0_src_all.tar.gz" ) MD5="817f3700ad4889d79e78336b42bd802b" diff --git a/recipes/bioconductor-gseabase/meta.yaml b/recipes/bioconductor-gseabase/meta.yaml index 359b1e1799bc0..7b44035af3a7e 100644 --- a/recipes/bioconductor-gseabase/meta.yaml +++ b/recipes/bioconductor-gseabase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6e562d9bbdc3e1305b0af55f106e418f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gseabenchmarker/meta.yaml b/recipes/bioconductor-gseabenchmarker/meta.yaml index de20edfa5c70f..7824f5c209b46 100644 --- a/recipes/bioconductor-gseabenchmarker/meta.yaml +++ b/recipes/bioconductor-gseabenchmarker/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6666b019e68213e8fb990d28955ade35 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsealm/meta.yaml b/recipes/bioconductor-gsealm/meta.yaml index fef76d4c261d4..4cd32d5188a06 100644 --- a/recipes/bioconductor-gsealm/meta.yaml +++ b/recipes/bioconductor-gsealm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 44954c57f7ebdd5e32d0a86d2961a28c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsean/meta.yaml b/recipes/bioconductor-gsean/meta.yaml index 58d6e55e40bbf..ae55ce99d9ffd 100644 --- a/recipes/bioconductor-gsean/meta.yaml +++ b/recipes/bioconductor-gsean/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f6381b7ee7c8d515568c970921768f54 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gskb/meta.yaml b/recipes/bioconductor-gskb/meta.yaml index 4b143b0f3c490..5a104fea4e076 100644 --- a/recipes/bioconductor-gskb/meta.yaml +++ b/recipes/bioconductor-gskb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b6a505908c6339c2cc3e5f9b937737aa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gskb/post-link.sh b/recipes/bioconductor-gskb/post-link.sh index 5d0002ec95edb..484401c7d5354 100644 --- a/recipes/bioconductor-gskb/post-link.sh +++ b/recipes/bioconductor-gskb/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/gskb_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/gskb_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gskb/bioconductor-gskb_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gskb/bioconductor-gskb_1.16.0_src_all.tar.gz" ) MD5="b6a505908c6339c2cc3e5f9b937737aa" diff --git a/recipes/bioconductor-gsreg/meta.yaml b/recipes/bioconductor-gsreg/meta.yaml index 36090b31dbe1e..1aedda7520aa3 100644 --- a/recipes/bioconductor-gsreg/meta.yaml +++ b/recipes/bioconductor-gsreg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 75a7727c6c3ec5dddbd7fe272c65b2d1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,13 +21,13 @@ requirements: host: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-org.hs.eg.db >=3.8.0,<3.9.0' - r-base run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-org.hs.eg.db >=3.8.0,<3.9.0' - r-base build: diff --git a/recipes/bioconductor-gsri/meta.yaml b/recipes/bioconductor-gsri/meta.yaml index 3090efbb14589..58dcc426fc0e4 100644 --- a/recipes/bioconductor-gsri/meta.yaml +++ b/recipes/bioconductor-gsri/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fb44aa45a4375a0e2b7b6ed0c4604285 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsva/meta.yaml b/recipes/bioconductor-gsva/meta.yaml index cfd70fd35ec50..492eeff9d9541 100644 --- a/recipes/bioconductor-gsva/meta.yaml +++ b/recipes/bioconductor-gsva/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fbf37c12f2e4ddbefffe06d68a49c54c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsvadata/meta.yaml b/recipes/bioconductor-gsvadata/meta.yaml index d529cf46ebdaa..cf91c98ec6f8b 100644 --- a/recipes/bioconductor-gsvadata/meta.yaml +++ b/recipes/bioconductor-gsvadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 484d17c3ba9983370f7d91f8db3899e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gsvadata/post-link.sh b/recipes/bioconductor-gsvadata/post-link.sh index bc937217fa2f7..a7342f8a14674 100644 --- a/recipes/bioconductor-gsvadata/post-link.sh +++ b/recipes/bioconductor-gsvadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/GSVAdata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/GSVAdata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gsvadata/bioconductor-gsvadata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gsvadata/bioconductor-gsvadata_1.20.0_src_all.tar.gz" ) MD5="484d17c3ba9983370f7d91f8db3899e7" diff --git a/recipes/bioconductor-gtrellis/meta.yaml b/recipes/bioconductor-gtrellis/meta.yaml index af68174f67f90..03fb6c4f46e7c 100644 --- a/recipes/bioconductor-gtrellis/meta.yaml +++ b/recipes/bioconductor-gtrellis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b3c146b4dab9ee1afcdceefd70895da3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-guideseq/meta.yaml b/recipes/bioconductor-guideseq/meta.yaml index 7d2d7bf4887ac..7fdacb5be13e9 100644 --- a/recipes/bioconductor-guideseq/meta.yaml +++ b/recipes/bioconductor-guideseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1f6c785e409fd430fd39babe82a8b53d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-guitar/meta.yaml b/recipes/bioconductor-guitar/meta.yaml index 70d3501e5cb17..0d5849c3f65e8 100644 --- a/recipes/bioconductor-guitar/meta.yaml +++ b/recipes/bioconductor-guitar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6d39650e6b2647c97fdb54ff80fa1357 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gviz/meta.yaml b/recipes/bioconductor-gviz/meta.yaml index 9759173a80c23..3446ead075540 100644 --- a/recipes/bioconductor-gviz/meta.yaml +++ b/recipes/bioconductor-gviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e8371fbbacb745b624330b721c905be2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gwascat/meta.yaml b/recipes/bioconductor-gwascat/meta.yaml index 0536c2284bf66..2253f0362a9fe 100644 --- a/recipes/bioconductor-gwascat/meta.yaml +++ b/recipes/bioconductor-gwascat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2d207fdbf68b17a46b2c3b78ea275455 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -26,7 +26,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' @@ -39,7 +39,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' diff --git a/recipes/bioconductor-gwasdata/meta.yaml b/recipes/bioconductor-gwasdata/meta.yaml index 9c4c70bbd844c..f67d764fbdd11 100644 --- a/recipes/bioconductor-gwasdata/meta.yaml +++ b/recipes/bioconductor-gwasdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4e1c2ce5dfcb6411e5b6d6690aeeb369 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gwasdata/post-link.sh b/recipes/bioconductor-gwasdata/post-link.sh index 58082a4e227bb..a907816251fbc 100644 --- a/recipes/bioconductor-gwasdata/post-link.sh +++ b/recipes/bioconductor-gwasdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/GWASdata_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/GWASdata_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-gwasdata/bioconductor-gwasdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-gwasdata/bioconductor-gwasdata_1.22.0_src_all.tar.gz" ) MD5="4e1c2ce5dfcb6411e5b6d6690aeeb369" diff --git a/recipes/bioconductor-gwastools/meta.yaml b/recipes/bioconductor-gwastools/meta.yaml index 09d1a71d15aea..578e6664117c1 100644 --- a/recipes/bioconductor-gwastools/meta.yaml +++ b/recipes/bioconductor-gwastools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f97345ccabcee4ef4fbc4308bfdad16 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-gwasurvivr/meta.yaml b/recipes/bioconductor-gwasurvivr/meta.yaml index 5740b2ada82cb..7f03578c875fe 100644 --- a/recipes/bioconductor-gwasurvivr/meta.yaml +++ b/recipes/bioconductor-gwasurvivr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4903756809691e97955b79d0f185aa1f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-h10kcod.db/meta.yaml b/recipes/bioconductor-h10kcod.db/meta.yaml index 20ee9880ea60b..06ef1a4434196 100644 --- a/recipes/bioconductor-h10kcod.db/meta.yaml +++ b/recipes/bioconductor-h10kcod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a555739cea229f286953c3297c145e9c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-h20kcod.db/meta.yaml b/recipes/bioconductor-h20kcod.db/meta.yaml index 95900259f9f71..c663dec1070c2 100644 --- a/recipes/bioconductor-h20kcod.db/meta.yaml +++ b/recipes/bioconductor-h20kcod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3647facb272f58424f4c94ef92e8ee45 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-h5vc/meta.yaml b/recipes/bioconductor-h5vc/meta.yaml index d5ba7d1dd357c..2ca416ae5d5b3 100644 --- a/recipes/bioconductor-h5vc/meta.yaml +++ b/recipes/bioconductor-h5vc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7e2c123b13cf7d854810bb8e47c93e8a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-h5vcdata/meta.yaml b/recipes/bioconductor-h5vcdata/meta.yaml index e4cc241e9dae1..48b6166d01a29 100644 --- a/recipes/bioconductor-h5vcdata/meta.yaml +++ b/recipes/bioconductor-h5vcdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cd3b929b2cde6716aa26ffd790f350da build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-h5vcdata/post-link.sh b/recipes/bioconductor-h5vcdata/post-link.sh index 2cece8d586fde..2242fd6d84f18 100644 --- a/recipes/bioconductor-h5vcdata/post-link.sh +++ b/recipes/bioconductor-h5vcdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/h5vcData_2.4.0.tar.gz" "https://bioarchive.galaxyproject.org/h5vcData_2.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-h5vcdata/bioconductor-h5vcdata_2.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-h5vcdata/bioconductor-h5vcdata_2.4.0_src_all.tar.gz" ) MD5="cd3b929b2cde6716aa26ffd790f350da" diff --git a/recipes/bioconductor-hapfabia/meta.yaml b/recipes/bioconductor-hapfabia/meta.yaml index bef86b5387f66..caeb761e0e1e5 100644 --- a/recipes/bioconductor-hapfabia/meta.yaml +++ b/recipes/bioconductor-hapfabia/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a63686618465f59c0545d0b36c51f238 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hapmap100khind/meta.yaml b/recipes/bioconductor-hapmap100khind/meta.yaml index cd8d675b95d9f..a4edbbbaf8546 100644 --- a/recipes/bioconductor-hapmap100khind/meta.yaml +++ b/recipes/bioconductor-hapmap100khind/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a5072491e91e762e1ec95fe998413f77 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hapmap100khind/post-link.sh b/recipes/bioconductor-hapmap100khind/post-link.sh index 07e4fa2242bac..d4f363a57cca6 100644 --- a/recipes/bioconductor-hapmap100khind/post-link.sh +++ b/recipes/bioconductor-hapmap100khind/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hapmap100khind_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/hapmap100khind_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hapmap100khind/bioconductor-hapmap100khind_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hapmap100khind/bioconductor-hapmap100khind_1.26.0_src_all.tar.gz" ) MD5="a5072491e91e762e1ec95fe998413f77" diff --git a/recipes/bioconductor-hapmap100kxba/meta.yaml b/recipes/bioconductor-hapmap100kxba/meta.yaml index 50b5e6e2ef567..e67afd9395524 100644 --- a/recipes/bioconductor-hapmap100kxba/meta.yaml +++ b/recipes/bioconductor-hapmap100kxba/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 11ec72b847b929a9697461cb7143ecc1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hapmap100kxba/post-link.sh b/recipes/bioconductor-hapmap100kxba/post-link.sh index 1fc0a8c7a6e24..3dbcdae87b17f 100644 --- a/recipes/bioconductor-hapmap100kxba/post-link.sh +++ b/recipes/bioconductor-hapmap100kxba/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hapmap100kxba_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/hapmap100kxba_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hapmap100kxba/bioconductor-hapmap100kxba_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hapmap100kxba/bioconductor-hapmap100kxba_1.26.0_src_all.tar.gz" ) MD5="11ec72b847b929a9697461cb7143ecc1" diff --git a/recipes/bioconductor-hapmap370k/meta.yaml b/recipes/bioconductor-hapmap370k/meta.yaml index d9dc9c910c6af..a5a5fcb89a844 100644 --- a/recipes/bioconductor-hapmap370k/meta.yaml +++ b/recipes/bioconductor-hapmap370k/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 569556341a45da799372aaf1012be72e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hapmap500knsp/meta.yaml b/recipes/bioconductor-hapmap500knsp/meta.yaml index f4624fadd0967..a3d9034a7c266 100644 --- a/recipes/bioconductor-hapmap500knsp/meta.yaml +++ b/recipes/bioconductor-hapmap500knsp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c78f3012d3aee6bcfe793a7f14cdac6d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hapmap500knsp/post-link.sh b/recipes/bioconductor-hapmap500knsp/post-link.sh index b9531c5050153..fb935abed9aa9 100644 --- a/recipes/bioconductor-hapmap500knsp/post-link.sh +++ b/recipes/bioconductor-hapmap500knsp/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hapmap500knsp_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/hapmap500knsp_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hapmap500knsp/bioconductor-hapmap500knsp_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hapmap500knsp/bioconductor-hapmap500knsp_1.26.0_src_all.tar.gz" ) MD5="c78f3012d3aee6bcfe793a7f14cdac6d" diff --git a/recipes/bioconductor-hapmap500ksty/meta.yaml b/recipes/bioconductor-hapmap500ksty/meta.yaml index 8e8c231b0602d..6df8f1dfa67cf 100644 --- a/recipes/bioconductor-hapmap500ksty/meta.yaml +++ b/recipes/bioconductor-hapmap500ksty/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c9c6bd3acf4e2ab7e7beb7ad6a9dbb8f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hapmap500ksty/post-link.sh b/recipes/bioconductor-hapmap500ksty/post-link.sh index acc67c21fecde..c0dcdbeb574e1 100644 --- a/recipes/bioconductor-hapmap500ksty/post-link.sh +++ b/recipes/bioconductor-hapmap500ksty/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hapmap500ksty_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/hapmap500ksty_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hapmap500ksty/bioconductor-hapmap500ksty_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hapmap500ksty/bioconductor-hapmap500ksty_1.26.0_src_all.tar.gz" ) MD5="c9c6bd3acf4e2ab7e7beb7ad6a9dbb8f" diff --git a/recipes/bioconductor-hapmapsnp5/meta.yaml b/recipes/bioconductor-hapmapsnp5/meta.yaml index 6ba56c04140aa..a0f11c71240d8 100644 --- a/recipes/bioconductor-hapmapsnp5/meta.yaml +++ b/recipes/bioconductor-hapmapsnp5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0ca43c40b0ef668b56edefa059dead89 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hapmapsnp5/post-link.sh b/recipes/bioconductor-hapmapsnp5/post-link.sh index 53787d9039f0f..55a4d925a2e50 100644 --- a/recipes/bioconductor-hapmapsnp5/post-link.sh +++ b/recipes/bioconductor-hapmapsnp5/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hapmapsnp5_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/hapmapsnp5_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hapmapsnp5/bioconductor-hapmapsnp5_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hapmapsnp5/bioconductor-hapmapsnp5_1.26.0_src_all.tar.gz" ) MD5="0ca43c40b0ef668b56edefa059dead89" diff --git a/recipes/bioconductor-hapmapsnp6/meta.yaml b/recipes/bioconductor-hapmapsnp6/meta.yaml index d2720f7a743c7..d31e79894113b 100644 --- a/recipes/bioconductor-hapmapsnp6/meta.yaml +++ b/recipes/bioconductor-hapmapsnp6/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: df63dbabc0405f8f09ca76aecd6077b8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hapmapsnp6/post-link.sh b/recipes/bioconductor-hapmapsnp6/post-link.sh index 87e3c80e1f98d..40bdbeaf7d2c9 100644 --- a/recipes/bioconductor-hapmapsnp6/post-link.sh +++ b/recipes/bioconductor-hapmapsnp6/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hapmapsnp6_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/hapmapsnp6_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hapmapsnp6/bioconductor-hapmapsnp6_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hapmapsnp6/bioconductor-hapmapsnp6_1.26.0_src_all.tar.gz" ) MD5="df63dbabc0405f8f09ca76aecd6077b8" diff --git a/recipes/bioconductor-harbchip/meta.yaml b/recipes/bioconductor-harbchip/meta.yaml index e454d946ef47a..6ae42dfadf942 100644 --- a/recipes/bioconductor-harbchip/meta.yaml +++ b/recipes/bioconductor-harbchip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8b019087317d308012e39effa61094d7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-harbchip/post-link.sh b/recipes/bioconductor-harbchip/post-link.sh index f79b89f0c40ab..788b00b74ec98 100644 --- a/recipes/bioconductor-harbchip/post-link.sh +++ b/recipes/bioconductor-harbchip/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/harbChIP_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/harbChIP_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-harbchip/bioconductor-harbchip_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-harbchip/bioconductor-harbchip_1.22.0_src_all.tar.gz" ) MD5="8b019087317d308012e39effa61094d7" diff --git a/recipes/bioconductor-harman/meta.yaml b/recipes/bioconductor-harman/meta.yaml index 48c0525518381..bbdf7426700b5 100644 --- a/recipes/bioconductor-harman/meta.yaml +++ b/recipes/bioconductor-harman/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 52cf3b3f74e74865d98703cb842681aa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-harmandata/meta.yaml b/recipes/bioconductor-harmandata/meta.yaml index e41a8df09b8fd..2b39841086333 100644 --- a/recipes/bioconductor-harmandata/meta.yaml +++ b/recipes/bioconductor-harmandata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e556ea2db6907201425241a1251c4149 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-harmandata/post-link.sh b/recipes/bioconductor-harmandata/post-link.sh index bec9c3d7f096d..cc828c1f4eb83 100644 --- a/recipes/bioconductor-harmandata/post-link.sh +++ b/recipes/bioconductor-harmandata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HarmanData_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/HarmanData_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-harmandata/bioconductor-harmandata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-harmandata/bioconductor-harmandata_1.12.0_src_all.tar.gz" ) MD5="e556ea2db6907201425241a1251c4149" diff --git a/recipes/bioconductor-harmonizedtcgadata/meta.yaml b/recipes/bioconductor-harmonizedtcgadata/meta.yaml index e0ac3b27527e3..2c783816ec6a9 100644 --- a/recipes/bioconductor-harmonizedtcgadata/meta.yaml +++ b/recipes/bioconductor-harmonizedtcgadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 90382d0b019354adb9ec7253737a1a5b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-harmonizedtcgadata/post-link.sh b/recipes/bioconductor-harmonizedtcgadata/post-link.sh index 72dace4128e8c..15cb576d1b716 100644 --- a/recipes/bioconductor-harmonizedtcgadata/post-link.sh +++ b/recipes/bioconductor-harmonizedtcgadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HarmonizedTCGAData_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/HarmonizedTCGAData_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-harmonizedtcgadata/bioconductor-harmonizedtcgadata_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-harmonizedtcgadata/bioconductor-harmonizedtcgadata_1.6.0_src_all.tar.gz" ) MD5="90382d0b019354adb9ec7253737a1a5b" diff --git a/recipes/bioconductor-harshlight/meta.yaml b/recipes/bioconductor-harshlight/meta.yaml index c4074476a0676..4e855787a53b9 100644 --- a/recipes/bioconductor-harshlight/meta.yaml +++ b/recipes/bioconductor-harshlight/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd903a7f83459d6bf07f5ee37b2b606e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hcabrowser/meta.yaml b/recipes/bioconductor-hcabrowser/meta.yaml index 8bbce04fcc437..28727bae2595a 100644 --- a/recipes/bioconductor-hcabrowser/meta.yaml +++ b/recipes/bioconductor-hcabrowser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d8001d23d6f8fb7c2f812eda0120ed19 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hcadata/meta.yaml b/recipes/bioconductor-hcadata/meta.yaml index a7a805cc10f0e..8c8200ca82660 100644 --- a/recipes/bioconductor-hcadata/meta.yaml +++ b/recipes/bioconductor-hcadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1a28dbab85f7d88dc4d525dbdb7f6757 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hcadata/post-link.sh b/recipes/bioconductor-hcadata/post-link.sh index d49c5478671ef..3788b178c30c0 100644 --- a/recipes/bioconductor-hcadata/post-link.sh +++ b/recipes/bioconductor-hcadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HCAData_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/HCAData_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hcadata/bioconductor-hcadata_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hcadata/bioconductor-hcadata_1.0.0_src_all.tar.gz" ) MD5="1a28dbab85f7d88dc4d525dbdb7f6757" diff --git a/recipes/bioconductor-hcg110.db/meta.yaml b/recipes/bioconductor-hcg110.db/meta.yaml index 879cb2893bc57..89f46371b397d 100644 --- a/recipes/bioconductor-hcg110.db/meta.yaml +++ b/recipes/bioconductor-hcg110.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eaba09d7e88bb913fd18f4e8fb72760b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hcg110cdf/meta.yaml b/recipes/bioconductor-hcg110cdf/meta.yaml index 4d6cb7a00a5d4..dad92dc912609 100644 --- a/recipes/bioconductor-hcg110cdf/meta.yaml +++ b/recipes/bioconductor-hcg110cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b53167876217ddb301204719da23eafc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hcg110probe/meta.yaml b/recipes/bioconductor-hcg110probe/meta.yaml index f05eaa16db855..8ac3a3091c365 100644 --- a/recipes/bioconductor-hcg110probe/meta.yaml +++ b/recipes/bioconductor-hcg110probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 51af8d6a7090ea7c5fe630dcea68bfb3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hd2013sgi/meta.yaml b/recipes/bioconductor-hd2013sgi/meta.yaml index 63399d9d547bd..103bcdb5bfb4c 100644 --- a/recipes/bioconductor-hd2013sgi/meta.yaml +++ b/recipes/bioconductor-hd2013sgi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bc5df4cfc33cf00def4c05aa6f6d78c9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hd2013sgi/post-link.sh b/recipes/bioconductor-hd2013sgi/post-link.sh index ae838e3479cfc..75e0e174a2b40 100644 --- a/recipes/bioconductor-hd2013sgi/post-link.sh +++ b/recipes/bioconductor-hd2013sgi/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HD2013SGI_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/HD2013SGI_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hd2013sgi/bioconductor-hd2013sgi_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hd2013sgi/bioconductor-hd2013sgi_1.24.0_src_all.tar.gz" ) MD5="bc5df4cfc33cf00def4c05aa6f6d78c9" diff --git a/recipes/bioconductor-hdcytodata/meta.yaml b/recipes/bioconductor-hdcytodata/meta.yaml index fffc98c53111d..99d296f4a3284 100644 --- a/recipes/bioconductor-hdcytodata/meta.yaml +++ b/recipes/bioconductor-hdcytodata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7e6294543c192c0a089c6eb1c6c406ce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hdcytodata/post-link.sh b/recipes/bioconductor-hdcytodata/post-link.sh index a06d6ffa0a028..53175b9514ccc 100644 --- a/recipes/bioconductor-hdcytodata/post-link.sh +++ b/recipes/bioconductor-hdcytodata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HDCytoData_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/HDCytoData_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hdcytodata/bioconductor-hdcytodata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hdcytodata/bioconductor-hdcytodata_1.4.0_src_all.tar.gz" ) MD5="7e6294543c192c0a089c6eb1c6c406ce" diff --git a/recipes/bioconductor-hdf5array/meta.yaml b/recipes/bioconductor-hdf5array/meta.yaml index c7960c76861c1..799ff0a11f6a2 100644 --- a/recipes/bioconductor-hdf5array/meta.yaml +++ b/recipes/bioconductor-hdf5array/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.0" %} +{% set version = "1.12.1" %} {% set name = "HDF5Array" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 9672128c2746cb7170b63f1a58d1d7cf + md5: dd67e1f670a830eedce958e2f6df4351 build: number: 0 rpaths: diff --git a/recipes/bioconductor-hdtd/meta.yaml b/recipes/bioconductor-hdtd/meta.yaml index 2687fa6b2457e..e485d8ad7cc70 100644 --- a/recipes/bioconductor-hdtd/meta.yaml +++ b/recipes/bioconductor-hdtd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 96e4ebd46143fc76f1a8fd2f91978c14 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-healthyflowdata/meta.yaml b/recipes/bioconductor-healthyflowdata/meta.yaml index 315e205a4da36..08f654bd5b1b9 100644 --- a/recipes/bioconductor-healthyflowdata/meta.yaml +++ b/recipes/bioconductor-healthyflowdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e68c9638bbe2a477a0d8cf2b99d7fd3c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-healthyflowdata/post-link.sh b/recipes/bioconductor-healthyflowdata/post-link.sh index dc27e1b2b22da..ea766212511e6 100644 --- a/recipes/bioconductor-healthyflowdata/post-link.sh +++ b/recipes/bioconductor-healthyflowdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/healthyFlowData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/healthyFlowData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-healthyflowdata/bioconductor-healthyflowdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-healthyflowdata/bioconductor-healthyflowdata_1.22.0_src_all.tar.gz" ) MD5="e68c9638bbe2a477a0d8cf2b99d7fd3c" diff --git a/recipes/bioconductor-heatmaps/meta.yaml b/recipes/bioconductor-heatmaps/meta.yaml index 08adc4ffbad9b..1450273f61a4c 100644 --- a/recipes/bioconductor-heatmaps/meta.yaml +++ b/recipes/bioconductor-heatmaps/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3f929be2441b272387c5a7e59289cc47 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-heatplus/meta.yaml b/recipes/bioconductor-heatplus/meta.yaml index b0f018dff8927..0076d89315d63 100644 --- a/recipes/bioconductor-heatplus/meta.yaml +++ b/recipes/bioconductor-heatplus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f2b40b768decb8a280ab1d5bb4212d14 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-heebodata/meta.yaml b/recipes/bioconductor-heebodata/meta.yaml index f83392a22ee77..3932ae10e1a58 100644 --- a/recipes/bioconductor-heebodata/meta.yaml +++ b/recipes/bioconductor-heebodata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 76163c616e6f8e975962b0b0ad45da7f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-heebodata/post-link.sh b/recipes/bioconductor-heebodata/post-link.sh index 6e140e6f3e567..233d0c1c953f5 100644 --- a/recipes/bioconductor-heebodata/post-link.sh +++ b/recipes/bioconductor-heebodata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HEEBOdata_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/HEEBOdata_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-heebodata/bioconductor-heebodata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-heebodata/bioconductor-heebodata_1.22.0_src_all.tar.gz" ) MD5="76163c616e6f8e975962b0b0ad45da7f" diff --git a/recipes/bioconductor-helloranges/meta.yaml b/recipes/bioconductor-helloranges/meta.yaml index 02500bb27dc3f..5916d759d2044 100644 --- a/recipes/bioconductor-helloranges/meta.yaml +++ b/recipes/bioconductor-helloranges/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2162f8502e0051913184575fbed4ac7b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hellorangesdata/meta.yaml b/recipes/bioconductor-hellorangesdata/meta.yaml index 8b6da806fd8dc..fb60a3d477810 100644 --- a/recipes/bioconductor-hellorangesdata/meta.yaml +++ b/recipes/bioconductor-hellorangesdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 25607b151c01f459bf0673a7a1fe6ea7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hellorangesdata/post-link.sh b/recipes/bioconductor-hellorangesdata/post-link.sh index 5ace22c99e9aa..7bc097b9dcadd 100644 --- a/recipes/bioconductor-hellorangesdata/post-link.sh +++ b/recipes/bioconductor-hellorangesdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HelloRangesData_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/HelloRangesData_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hellorangesdata/bioconductor-hellorangesdata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hellorangesdata/bioconductor-hellorangesdata_1.10.0_src_all.tar.gz" ) MD5="25607b151c01f459bf0673a7a1fe6ea7" diff --git a/recipes/bioconductor-help/meta.yaml b/recipes/bioconductor-help/meta.yaml index 9c89b2028498d..728f34a4f5fa0 100644 --- a/recipes/bioconductor-help/meta.yaml +++ b/recipes/bioconductor-help/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 779de524a7e41ec6fcdc7fe2f45e252b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hem/meta.yaml b/recipes/bioconductor-hem/meta.yaml index 2900c484aad39..291afd2e123c3 100644 --- a/recipes/bioconductor-hem/meta.yaml +++ b/recipes/bioconductor-hem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ac3fc2efa22e3d98e544b79834d337d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgfocus.db/meta.yaml b/recipes/bioconductor-hgfocus.db/meta.yaml index 432c8a8b22920..af29387cce9a2 100644 --- a/recipes/bioconductor-hgfocus.db/meta.yaml +++ b/recipes/bioconductor-hgfocus.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7fb2bb82975ff21d075d3c8ce6f8162a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgfocuscdf/meta.yaml b/recipes/bioconductor-hgfocuscdf/meta.yaml index 981af01bf86b8..31e0af2f518fe 100644 --- a/recipes/bioconductor-hgfocuscdf/meta.yaml +++ b/recipes/bioconductor-hgfocuscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9883e53bfd9ddb9ad5f3a9c2e47bbd2c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgfocusprobe/meta.yaml b/recipes/bioconductor-hgfocusprobe/meta.yaml index 6319f23b895de..501d5832f5bf8 100644 --- a/recipes/bioconductor-hgfocusprobe/meta.yaml +++ b/recipes/bioconductor-hgfocusprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0a399ed276b89e3d80946b6cbbf167b4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133a.db/meta.yaml b/recipes/bioconductor-hgu133a.db/meta.yaml index c28917467fcbe..5f05817807b77 100644 --- a/recipes/bioconductor-hgu133a.db/meta.yaml +++ b/recipes/bioconductor-hgu133a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ce0397160fe78a92671e492a22542a79 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133a2.db/meta.yaml b/recipes/bioconductor-hgu133a2.db/meta.yaml index 9043739f751a7..bf159e558e722 100644 --- a/recipes/bioconductor-hgu133a2.db/meta.yaml +++ b/recipes/bioconductor-hgu133a2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 15cad9bc3f5ef6fca5300638a9c8bb86 build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133a2cdf/meta.yaml b/recipes/bioconductor-hgu133a2cdf/meta.yaml index 0851ef6e8c06d..9a3f865425376 100644 --- a/recipes/bioconductor-hgu133a2cdf/meta.yaml +++ b/recipes/bioconductor-hgu133a2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 566bc70f0bb94a376bf88f191a2f067e build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133a2frmavecs/meta.yaml b/recipes/bioconductor-hgu133a2frmavecs/meta.yaml index 3dc2f917cf193..a63c682f303c0 100644 --- a/recipes/bioconductor-hgu133a2frmavecs/meta.yaml +++ b/recipes/bioconductor-hgu133a2frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4bf8cf5cbaf288ce0a9618d764c87044 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133a2probe/meta.yaml b/recipes/bioconductor-hgu133a2probe/meta.yaml index eb9c5db2f2c71..cf4b79d5c3ba5 100644 --- a/recipes/bioconductor-hgu133a2probe/meta.yaml +++ b/recipes/bioconductor-hgu133a2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 736b43cfc37a297ccc0d30cb75fcc95a build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133abarcodevecs/meta.yaml b/recipes/bioconductor-hgu133abarcodevecs/meta.yaml index 74ba35b2598b7..ebf3bb2d9561d 100644 --- a/recipes/bioconductor-hgu133abarcodevecs/meta.yaml +++ b/recipes/bioconductor-hgu133abarcodevecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c3a80fbd654d19c76355f818e4e19b24 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133abarcodevecs/post-link.sh b/recipes/bioconductor-hgu133abarcodevecs/post-link.sh index 4700e66f0db63..b83f8a0c9bcd9 100644 --- a/recipes/bioconductor-hgu133abarcodevecs/post-link.sh +++ b/recipes/bioconductor-hgu133abarcodevecs/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hgu133abarcodevecs_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/hgu133abarcodevecs_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hgu133abarcodevecs/bioconductor-hgu133abarcodevecs_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hgu133abarcodevecs/bioconductor-hgu133abarcodevecs_1.22.0_src_all.tar.gz" ) MD5="c3a80fbd654d19c76355f818e4e19b24" diff --git a/recipes/bioconductor-hgu133acdf/meta.yaml b/recipes/bioconductor-hgu133acdf/meta.yaml index 34c31a3f12c69..196d12e0a2936 100644 --- a/recipes/bioconductor-hgu133acdf/meta.yaml +++ b/recipes/bioconductor-hgu133acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d3e0e22b2d3943d26c94e7c01b91035c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133afrmavecs/meta.yaml b/recipes/bioconductor-hgu133afrmavecs/meta.yaml index e3bcf86fd36c1..2b390704d72c9 100644 --- a/recipes/bioconductor-hgu133afrmavecs/meta.yaml +++ b/recipes/bioconductor-hgu133afrmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 85034ab02491f5b3699d210cef50812d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133aprobe/meta.yaml b/recipes/bioconductor-hgu133aprobe/meta.yaml index 67a6acc73e8cf..3c3348dafb265 100644 --- a/recipes/bioconductor-hgu133aprobe/meta.yaml +++ b/recipes/bioconductor-hgu133aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 76cd9c54b0a8a0240dbb0fc758959d62 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133atagcdf/meta.yaml b/recipes/bioconductor-hgu133atagcdf/meta.yaml index 83498b5cdaff3..8bc3894294af6 100644 --- a/recipes/bioconductor-hgu133atagcdf/meta.yaml +++ b/recipes/bioconductor-hgu133atagcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 01f8809e0deb5b83f3f0decec881a1d8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133atagprobe/meta.yaml b/recipes/bioconductor-hgu133atagprobe/meta.yaml index 49d95f01b1ebf..003040796fbf3 100644 --- a/recipes/bioconductor-hgu133atagprobe/meta.yaml +++ b/recipes/bioconductor-hgu133atagprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 97aeaf9ac9450369cf030581b8ec5a53 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133b.db/meta.yaml b/recipes/bioconductor-hgu133b.db/meta.yaml index bf835df4dfa1e..729c051feaf57 100644 --- a/recipes/bioconductor-hgu133b.db/meta.yaml +++ b/recipes/bioconductor-hgu133b.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3e7c3fa57703d21d4a7624a45d921b24 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133bcdf/meta.yaml b/recipes/bioconductor-hgu133bcdf/meta.yaml index 3d5d6f8cb90d7..b9457b61c8ae7 100644 --- a/recipes/bioconductor-hgu133bcdf/meta.yaml +++ b/recipes/bioconductor-hgu133bcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 649aaa5e6275be6ee4d24d80ca390ea5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133bprobe/meta.yaml b/recipes/bioconductor-hgu133bprobe/meta.yaml index 6249d8f376531..8baff00ed7704 100644 --- a/recipes/bioconductor-hgu133bprobe/meta.yaml +++ b/recipes/bioconductor-hgu133bprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 203750510e51450e1267e08c241151c4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133plus2.db/meta.yaml b/recipes/bioconductor-hgu133plus2.db/meta.yaml index 8f9a9a25c7f6d..e8f5b3d2be0ec 100644 --- a/recipes/bioconductor-hgu133plus2.db/meta.yaml +++ b/recipes/bioconductor-hgu133plus2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 45a376b6092da75907b9e73bbd90e5bf build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133plus2barcodevecs/meta.yaml b/recipes/bioconductor-hgu133plus2barcodevecs/meta.yaml index 1043e8dd43430..6909af721a8cb 100644 --- a/recipes/bioconductor-hgu133plus2barcodevecs/meta.yaml +++ b/recipes/bioconductor-hgu133plus2barcodevecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 48c436478b8b6da87385b0d4f8d3e205 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133plus2barcodevecs/post-link.sh b/recipes/bioconductor-hgu133plus2barcodevecs/post-link.sh index eb47399a1c345..75dd03115e040 100644 --- a/recipes/bioconductor-hgu133plus2barcodevecs/post-link.sh +++ b/recipes/bioconductor-hgu133plus2barcodevecs/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hgu133plus2barcodevecs_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/hgu133plus2barcodevecs_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hgu133plus2barcodevecs/bioconductor-hgu133plus2barcodevecs_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hgu133plus2barcodevecs/bioconductor-hgu133plus2barcodevecs_1.22.0_src_all.tar.gz" ) MD5="48c436478b8b6da87385b0d4f8d3e205" diff --git a/recipes/bioconductor-hgu133plus2cdf/meta.yaml b/recipes/bioconductor-hgu133plus2cdf/meta.yaml index e6b9b1de2fb8d..1e4cb98eb3e19 100644 --- a/recipes/bioconductor-hgu133plus2cdf/meta.yaml +++ b/recipes/bioconductor-hgu133plus2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 284fef2f0b777d7b53451538ddd53de3 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133plus2cellscore/meta.yaml b/recipes/bioconductor-hgu133plus2cellscore/meta.yaml index 84bd8fa766b40..8c54ee6bbb45a 100644 --- a/recipes/bioconductor-hgu133plus2cellscore/meta.yaml +++ b/recipes/bioconductor-hgu133plus2cellscore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: db5ad2756c518d14e1f2ed55e3794d16 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133plus2cellscore/post-link.sh b/recipes/bioconductor-hgu133plus2cellscore/post-link.sh index b2f226759c46b..0078181c8de8d 100644 --- a/recipes/bioconductor-hgu133plus2cellscore/post-link.sh +++ b/recipes/bioconductor-hgu133plus2cellscore/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hgu133plus2CellScore_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/hgu133plus2CellScore_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hgu133plus2cellscore/bioconductor-hgu133plus2cellscore_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hgu133plus2cellscore/bioconductor-hgu133plus2cellscore_1.4.0_src_all.tar.gz" ) MD5="db5ad2756c518d14e1f2ed55e3794d16" diff --git a/recipes/bioconductor-hgu133plus2frmavecs/meta.yaml b/recipes/bioconductor-hgu133plus2frmavecs/meta.yaml index 5f7616d2552bf..866e15bd4f3d9 100644 --- a/recipes/bioconductor-hgu133plus2frmavecs/meta.yaml +++ b/recipes/bioconductor-hgu133plus2frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a4781cbcccc1ee17dfd16259f1c7bebc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu133plus2probe/meta.yaml b/recipes/bioconductor-hgu133plus2probe/meta.yaml index 2dbdb0cb26d2f..88dedbea813fe 100644 --- a/recipes/bioconductor-hgu133plus2probe/meta.yaml +++ b/recipes/bioconductor-hgu133plus2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7a244787a0269bc72732ac3d830f34dd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu219.db/meta.yaml b/recipes/bioconductor-hgu219.db/meta.yaml index 10443f05db367..402a69e8d7306 100644 --- a/recipes/bioconductor-hgu219.db/meta.yaml +++ b/recipes/bioconductor-hgu219.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a4a0fd2ac170a75d8b17618615fcd7a0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu219cdf/meta.yaml b/recipes/bioconductor-hgu219cdf/meta.yaml index cc00fcaf1ed1d..253413b2ad452 100644 --- a/recipes/bioconductor-hgu219cdf/meta.yaml +++ b/recipes/bioconductor-hgu219cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 157a4280a9de960902260ab18f678949 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu219probe/meta.yaml b/recipes/bioconductor-hgu219probe/meta.yaml index dc65881e5b271..2b21ccdbff415 100644 --- a/recipes/bioconductor-hgu219probe/meta.yaml +++ b/recipes/bioconductor-hgu219probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c5bb2f7b2e0f8fa89e6a30befaee6497 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu2beta7/meta.yaml b/recipes/bioconductor-hgu2beta7/meta.yaml index d927ad5e5ceca..757c75213f67a 100644 --- a/recipes/bioconductor-hgu2beta7/meta.yaml +++ b/recipes/bioconductor-hgu2beta7/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 26d4ad63ca4429968dbdd8d981436c13 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu2beta7/post-link.sh b/recipes/bioconductor-hgu2beta7/post-link.sh index 785ce7e4f7833..c6cac8b3a5084 100644 --- a/recipes/bioconductor-hgu2beta7/post-link.sh +++ b/recipes/bioconductor-hgu2beta7/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hgu2beta7_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/hgu2beta7_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hgu2beta7/bioconductor-hgu2beta7_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hgu2beta7/bioconductor-hgu2beta7_1.24.0_src_all.tar.gz" ) MD5="26d4ad63ca4429968dbdd8d981436c13" diff --git a/recipes/bioconductor-hgu95a.db/meta.yaml b/recipes/bioconductor-hgu95a.db/meta.yaml index 22a9e068eba98..72b833d2a8712 100644 --- a/recipes/bioconductor-hgu95a.db/meta.yaml +++ b/recipes/bioconductor-hgu95a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e509dd32292601d81af8aa61ec782ca7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95acdf/meta.yaml b/recipes/bioconductor-hgu95acdf/meta.yaml index 67121a654aabf..be4e663aa30f3 100644 --- a/recipes/bioconductor-hgu95acdf/meta.yaml +++ b/recipes/bioconductor-hgu95acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: afc999d77b1532154d45911ad15a5897 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95aprobe/meta.yaml b/recipes/bioconductor-hgu95aprobe/meta.yaml index 83580c93f08fc..485c11f3cdf5f 100644 --- a/recipes/bioconductor-hgu95aprobe/meta.yaml +++ b/recipes/bioconductor-hgu95aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 67d94ecdc1889acc19dafd19d26700a2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95av2.db/meta.yaml b/recipes/bioconductor-hgu95av2.db/meta.yaml index b5dd767997dd2..89d18d4077724 100644 --- a/recipes/bioconductor-hgu95av2.db/meta.yaml +++ b/recipes/bioconductor-hgu95av2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a0ee1ba7f115a1504ca89619a0bc56dd build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95av2/meta.yaml b/recipes/bioconductor-hgu95av2/meta.yaml index c6e7386147232..30ae020039661 100644 --- a/recipes/bioconductor-hgu95av2/meta.yaml +++ b/recipes/bioconductor-hgu95av2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b92585c0f43e91bd1abd234b9465a6a7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95av2cdf/meta.yaml b/recipes/bioconductor-hgu95av2cdf/meta.yaml index 7c6760486583c..5eb231c04562c 100644 --- a/recipes/bioconductor-hgu95av2cdf/meta.yaml +++ b/recipes/bioconductor-hgu95av2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 026bae2f76433593f75ca6c79bc9a9d0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95av2probe/meta.yaml b/recipes/bioconductor-hgu95av2probe/meta.yaml index 602e9356e7ad4..df2ea3a4f2e55 100644 --- a/recipes/bioconductor-hgu95av2probe/meta.yaml +++ b/recipes/bioconductor-hgu95av2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d3efb56f7e7a264b633fac787a5a2b95 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95b.db/meta.yaml b/recipes/bioconductor-hgu95b.db/meta.yaml index 34349d9151f8b..eb58164baee6f 100644 --- a/recipes/bioconductor-hgu95b.db/meta.yaml +++ b/recipes/bioconductor-hgu95b.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c532e54fd7087f1b1cce0c1e61ae1c16 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95bcdf/meta.yaml b/recipes/bioconductor-hgu95bcdf/meta.yaml index b5f6297031a07..ab537d556fca3 100644 --- a/recipes/bioconductor-hgu95bcdf/meta.yaml +++ b/recipes/bioconductor-hgu95bcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e6e56b7a107bb2df25b3c25a8191385d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95bprobe/meta.yaml b/recipes/bioconductor-hgu95bprobe/meta.yaml index 935a30f80b112..b79e35354daf1 100644 --- a/recipes/bioconductor-hgu95bprobe/meta.yaml +++ b/recipes/bioconductor-hgu95bprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 60dcb57fd402dc24d53ef9390c893cfc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95c.db/meta.yaml b/recipes/bioconductor-hgu95c.db/meta.yaml index 3bd1c3a791597..25f856d732524 100644 --- a/recipes/bioconductor-hgu95c.db/meta.yaml +++ b/recipes/bioconductor-hgu95c.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 273595199acfafe4c50182916c9893ca build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95ccdf/meta.yaml b/recipes/bioconductor-hgu95ccdf/meta.yaml index 3f20f06c0fa33..dd356a30f821c 100644 --- a/recipes/bioconductor-hgu95ccdf/meta.yaml +++ b/recipes/bioconductor-hgu95ccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 976151eac05c320aec7a24397a6b5806 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95cprobe/meta.yaml b/recipes/bioconductor-hgu95cprobe/meta.yaml index 8212820b083aa..eb702157954dc 100644 --- a/recipes/bioconductor-hgu95cprobe/meta.yaml +++ b/recipes/bioconductor-hgu95cprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3fe935a52c70105dc7a214174c946455 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95d.db/meta.yaml b/recipes/bioconductor-hgu95d.db/meta.yaml index 67e588496db2d..9401276604a85 100644 --- a/recipes/bioconductor-hgu95d.db/meta.yaml +++ b/recipes/bioconductor-hgu95d.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e56da8022bb88c1cd495ea516eae6613 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95dcdf/meta.yaml b/recipes/bioconductor-hgu95dcdf/meta.yaml index 74a2b2847faa3..b1afa3e7bb14d 100644 --- a/recipes/bioconductor-hgu95dcdf/meta.yaml +++ b/recipes/bioconductor-hgu95dcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 36e11ff001b1bec3f34ba7c93132ad6f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95dprobe/meta.yaml b/recipes/bioconductor-hgu95dprobe/meta.yaml index 82e645661f0f9..5f895320d8d39 100644 --- a/recipes/bioconductor-hgu95dprobe/meta.yaml +++ b/recipes/bioconductor-hgu95dprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 165ce5029f49fc515b9ee0e6a6a29cb5 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95e.db/meta.yaml b/recipes/bioconductor-hgu95e.db/meta.yaml index 9e278b04edb17..7d02d9df6a5c4 100644 --- a/recipes/bioconductor-hgu95e.db/meta.yaml +++ b/recipes/bioconductor-hgu95e.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 18bbf38f91172616a7f78e63e85630e5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95ecdf/meta.yaml b/recipes/bioconductor-hgu95ecdf/meta.yaml index 013683f094fe0..849d0f480202b 100644 --- a/recipes/bioconductor-hgu95ecdf/meta.yaml +++ b/recipes/bioconductor-hgu95ecdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fa27cfff62a38fc51640d797bd628105 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgu95eprobe/meta.yaml b/recipes/bioconductor-hgu95eprobe/meta.yaml index 13eba9f98f2c9..6c81f2ff8371c 100644 --- a/recipes/bioconductor-hgu95eprobe/meta.yaml +++ b/recipes/bioconductor-hgu95eprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9e5407ab80c5bbb4065484be0b9c6191 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hguatlas13k.db/meta.yaml b/recipes/bioconductor-hguatlas13k.db/meta.yaml index 9e09d5623147b..d7ad5605519ae 100644 --- a/recipes/bioconductor-hguatlas13k.db/meta.yaml +++ b/recipes/bioconductor-hguatlas13k.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ab9ffe1a1de44c0f938129f193e7fb63 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgubeta7.db/meta.yaml b/recipes/bioconductor-hgubeta7.db/meta.yaml index 688b6e7bbd6e3..97aaabb8517fd 100644 --- a/recipes/bioconductor-hgubeta7.db/meta.yaml +++ b/recipes/bioconductor-hgubeta7.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1b8b065f95d2089985f59f22dcabc824 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgudkfz31.db/meta.yaml b/recipes/bioconductor-hgudkfz31.db/meta.yaml index 37dc2a8dc655d..6557a028cf483 100644 --- a/recipes/bioconductor-hgudkfz31.db/meta.yaml +++ b/recipes/bioconductor-hgudkfz31.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fa3ba493cebdac4253dea8fe5d58452b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgug4100a.db/meta.yaml b/recipes/bioconductor-hgug4100a.db/meta.yaml index 4e2b286e18421..6c5e1f87a75a8 100644 --- a/recipes/bioconductor-hgug4100a.db/meta.yaml +++ b/recipes/bioconductor-hgug4100a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b7856928278a77d71f963410ea4f2376 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgug4101a.db/meta.yaml b/recipes/bioconductor-hgug4101a.db/meta.yaml index 1db5cfc8f3e1b..ad3d54301bb8c 100644 --- a/recipes/bioconductor-hgug4101a.db/meta.yaml +++ b/recipes/bioconductor-hgug4101a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e4731217efbffd05d3ee7eec68ce0aa0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgug4110b.db/meta.yaml b/recipes/bioconductor-hgug4110b.db/meta.yaml index 8f8a176e3a82b..71fe31e06f971 100644 --- a/recipes/bioconductor-hgug4110b.db/meta.yaml +++ b/recipes/bioconductor-hgug4110b.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a9edcdbc121f22d4dec335a64598ff0e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgug4111a.db/meta.yaml b/recipes/bioconductor-hgug4111a.db/meta.yaml index 8020d3e54fa9f..077a37be006a3 100644 --- a/recipes/bioconductor-hgug4111a.db/meta.yaml +++ b/recipes/bioconductor-hgug4111a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a5f2c3b463915fa1ab0ca21e6b0f5840 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgug4112a.db/meta.yaml b/recipes/bioconductor-hgug4112a.db/meta.yaml index bc84ac833ce0c..759fa71601160 100644 --- a/recipes/bioconductor-hgug4112a.db/meta.yaml +++ b/recipes/bioconductor-hgug4112a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 67ecf8c887e2ebe1941cc51d0f5fb468 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hgug4845a.db/meta.yaml b/recipes/bioconductor-hgug4845a.db/meta.yaml index ebb43b9510d9c..903812a37277f 100644 --- a/recipes/bioconductor-hgug4845a.db/meta.yaml +++ b/recipes/bioconductor-hgug4845a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 46133d7bcb6d8c24c026304e8ddd150d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hguqiagenv3.db/meta.yaml b/recipes/bioconductor-hguqiagenv3.db/meta.yaml index 54476fe653a04..66858c9d64755 100644 --- a/recipes/bioconductor-hguqiagenv3.db/meta.yaml +++ b/recipes/bioconductor-hguqiagenv3.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 91ebb82e773ff799befdb8921b38e90e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hi16cod.db/meta.yaml b/recipes/bioconductor-hi16cod.db/meta.yaml index b2d204e88826e..9da8639b21800 100644 --- a/recipes/bioconductor-hi16cod.db/meta.yaml +++ b/recipes/bioconductor-hi16cod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: abdc77937e8d37fa5468691376ceb6a5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hiannotator/meta.yaml b/recipes/bioconductor-hiannotator/meta.yaml index 3c86ba9d04f05..ef568337ed1a6 100644 --- a/recipes/bioconductor-hiannotator/meta.yaml +++ b/recipes/bioconductor-hiannotator/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5e82f0d2242854d2462903c158f78b0c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hibag/meta.yaml b/recipes/bioconductor-hibag/meta.yaml index 07e1dfc91263d..dfa2c2c03b725 100644 --- a/recipes/bioconductor-hibag/meta.yaml +++ b/recipes/bioconductor-hibag/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 726af2e377f5adb21cbceeadfc75e7d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hicbricks/meta.yaml b/recipes/bioconductor-hicbricks/meta.yaml index 4af156ed7a084..a6c6709c8bb0f 100644 --- a/recipes/bioconductor-hicbricks/meta.yaml +++ b/recipes/bioconductor-hicbricks/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3b982b5180601d94f1d5d0dfb4e96665 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hiccompare/meta.yaml b/recipes/bioconductor-hiccompare/meta.yaml index dd31c8a19bbdb..e904406fbcd96 100644 --- a/recipes/bioconductor-hiccompare/meta.yaml +++ b/recipes/bioconductor-hiccompare/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89f5a317b6381160c2ef31d6b2d8c553 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hicdatahumanimr90/meta.yaml b/recipes/bioconductor-hicdatahumanimr90/meta.yaml index 9dcc2ca3282ab..7a525b2022bb3 100644 --- a/recipes/bioconductor-hicdatahumanimr90/meta.yaml +++ b/recipes/bioconductor-hicdatahumanimr90/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d7687765d6d2bee5988b52c927a1c6c3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hicdatahumanimr90/post-link.sh b/recipes/bioconductor-hicdatahumanimr90/post-link.sh index 3f8f287609327..a2d373793c83d 100644 --- a/recipes/bioconductor-hicdatahumanimr90/post-link.sh +++ b/recipes/bioconductor-hicdatahumanimr90/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HiCDataHumanIMR90_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/HiCDataHumanIMR90_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hicdatahumanimr90/bioconductor-hicdatahumanimr90_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hicdatahumanimr90/bioconductor-hicdatahumanimr90_1.4.0_src_all.tar.gz" ) MD5="d7687765d6d2bee5988b52c927a1c6c3" diff --git a/recipes/bioconductor-hicdatalymphoblast/meta.yaml b/recipes/bioconductor-hicdatalymphoblast/meta.yaml index bbc8d62aa590c..80533c1097a96 100644 --- a/recipes/bioconductor-hicdatalymphoblast/meta.yaml +++ b/recipes/bioconductor-hicdatalymphoblast/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6b12b6d3851d638acdab1a15a9225b92 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hicdatalymphoblast/post-link.sh b/recipes/bioconductor-hicdatalymphoblast/post-link.sh index 7e186e4d91dcd..d53ecc702e5c1 100644 --- a/recipes/bioconductor-hicdatalymphoblast/post-link.sh +++ b/recipes/bioconductor-hicdatalymphoblast/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HiCDataLymphoblast_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/HiCDataLymphoblast_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hicdatalymphoblast/bioconductor-hicdatalymphoblast_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hicdatalymphoblast/bioconductor-hicdatalymphoblast_1.20.0_src_all.tar.gz" ) MD5="6b12b6d3851d638acdab1a15a9225b92" diff --git a/recipes/bioconductor-hicrep/meta.yaml b/recipes/bioconductor-hicrep/meta.yaml index 0e17aa99fed9d..4051ea6e34ffb 100644 --- a/recipes/bioconductor-hicrep/meta.yaml +++ b/recipes/bioconductor-hicrep/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8eb8f8a4541cfd57b3dbdb43e83dafac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hiergwas/meta.yaml b/recipes/bioconductor-hiergwas/meta.yaml index 65ebe02734136..92b0f9601bff9 100644 --- a/recipes/bioconductor-hiergwas/meta.yaml +++ b/recipes/bioconductor-hiergwas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 517560970b191c05a63c080c2abe8956 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hierinf/meta.yaml b/recipes/bioconductor-hierinf/meta.yaml index 6d3b0aa26e22b..c8b669880c488 100644 --- a/recipes/bioconductor-hierinf/meta.yaml +++ b/recipes/bioconductor-hierinf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4c22ae972ff46a7b71014120383c3cf9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hiiragi2013/meta.yaml b/recipes/bioconductor-hiiragi2013/meta.yaml index b6026cf9627c6..3c3fbacb568e5 100644 --- a/recipes/bioconductor-hiiragi2013/meta.yaml +++ b/recipes/bioconductor-hiiragi2013/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c8382abd59d8f36b4ab89b63d0a7a438 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hiiragi2013/post-link.sh b/recipes/bioconductor-hiiragi2013/post-link.sh index da562979bac34..17c7f09c7ed26 100644 --- a/recipes/bioconductor-hiiragi2013/post-link.sh +++ b/recipes/bioconductor-hiiragi2013/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Hiiragi2013_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/Hiiragi2013_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hiiragi2013/bioconductor-hiiragi2013_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hiiragi2013/bioconductor-hiiragi2013_1.20.0_src_all.tar.gz" ) MD5="c8382abd59d8f36b4ab89b63d0a7a438" diff --git a/recipes/bioconductor-hilbertcurve/meta.yaml b/recipes/bioconductor-hilbertcurve/meta.yaml index 246e9b5e474bd..ed8a127f4d9f4 100644 --- a/recipes/bioconductor-hilbertcurve/meta.yaml +++ b/recipes/bioconductor-hilbertcurve/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0f13456bc1c6c31c6d12556d7a4d756f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hilbertvis/meta.yaml b/recipes/bioconductor-hilbertvis/meta.yaml index 32531b980ee8a..5f3a540e5622f 100644 --- a/recipes/bioconductor-hilbertvis/meta.yaml +++ b/recipes/bioconductor-hilbertvis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b944cceadff5086688b47e2b5141b7dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hilbertvisgui/meta.yaml b/recipes/bioconductor-hilbertvisgui/meta.yaml index f7596bf107b33..ca297431573e6 100644 --- a/recipes/bioconductor-hilbertvisgui/meta.yaml +++ b/recipes/bioconductor-hilbertvisgui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 267f2b6f362c492e5452fc3ee14e2ee4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,7 +22,6 @@ requirements: host: - 'bioconductor-hilbertvis >=1.42.0,<1.43.0' - r-base - - {{ cdt("gtkmm24") }} run: - 'bioconductor-hilbertvis >=1.42.0,<1.43.0' - r-base diff --git a/recipes/bioconductor-hipathia/meta.yaml b/recipes/bioconductor-hipathia/meta.yaml index 556f9e59ce2bd..efcffa8463b8c 100644 --- a/recipes/bioconductor-hipathia/meta.yaml +++ b/recipes/bioconductor-hipathia/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f7a13083f09722dba0d15cfea6fc3c8f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hireadsprocessor/meta.yaml b/recipes/bioconductor-hireadsprocessor/meta.yaml index d4cdf020d21ab..996726cbebbb7 100644 --- a/recipes/bioconductor-hireadsprocessor/meta.yaml +++ b/recipes/bioconductor-hireadsprocessor/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.19.0" %} +{% set version = "1.20.1" %} {% set name = "hiReadsProcessor" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: b73e50b02447211af7a7586757d3eb92 + md5: b4a03ff6f6b0a2a2f88958dee8b1775e build: number: 0 rpaths: @@ -27,7 +27,6 @@ requirements: - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-hiannotator >=1.18.0,<1.19.0' - - 'bioconductor-rsffreader >=0.32.0,<0.33.0' - r-base - r-dplyr - r-readxl @@ -39,7 +38,6 @@ requirements: - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-hiannotator >=1.18.0,<1.19.0' - - 'bioconductor-rsffreader >=0.32.0,<0.33.0' - r-base - r-dplyr - r-readxl diff --git a/recipes/bioconductor-hireewas/meta.yaml b/recipes/bioconductor-hireewas/meta.yaml index e7291c1a2d000..2851762e252cc 100644 --- a/recipes/bioconductor-hireewas/meta.yaml +++ b/recipes/bioconductor-hireewas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a885a8f029685d397a5572c26f02d054 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hitc/meta.yaml b/recipes/bioconductor-hitc/meta.yaml index efdd4e51daf33..706093ed406c7 100644 --- a/recipes/bioconductor-hitc/meta.yaml +++ b/recipes/bioconductor-hitc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 80af3724d38ab86abf8f7e0eb0fb1649 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hivcdnavantwout03/meta.yaml b/recipes/bioconductor-hivcdnavantwout03/meta.yaml index c6617249ac76e..c5428240f3438 100644 --- a/recipes/bioconductor-hivcdnavantwout03/meta.yaml +++ b/recipes/bioconductor-hivcdnavantwout03/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3978039dba5000fa5456c7fac8082002 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hivcdnavantwout03/post-link.sh b/recipes/bioconductor-hivcdnavantwout03/post-link.sh index 3248677f6208f..ea8d1d104a2bc 100644 --- a/recipes/bioconductor-hivcdnavantwout03/post-link.sh +++ b/recipes/bioconductor-hivcdnavantwout03/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HIVcDNAvantWout03_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/HIVcDNAvantWout03_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hivcdnavantwout03/bioconductor-hivcdnavantwout03_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hivcdnavantwout03/bioconductor-hivcdnavantwout03_1.24.0_src_all.tar.gz" ) MD5="3978039dba5000fa5456c7fac8082002" diff --git a/recipes/bioconductor-hivprtplus2cdf/meta.yaml b/recipes/bioconductor-hivprtplus2cdf/meta.yaml index fa84cde769617..46f5c74aad34a 100644 --- a/recipes/bioconductor-hivprtplus2cdf/meta.yaml +++ b/recipes/bioconductor-hivprtplus2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 143d9c2f5f328786bae7bb8dc4daf261 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hmdbquery/meta.yaml b/recipes/bioconductor-hmdbquery/meta.yaml index a5282a8b5ba44..8740d9f9c5e75 100644 --- a/recipes/bioconductor-hmdbquery/meta.yaml +++ b/recipes/bioconductor-hmdbquery/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 07e6442e9fa2d86e879df03d9472b6fe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hmmcopy/meta.yaml b/recipes/bioconductor-hmmcopy/meta.yaml index 2423dea914ae1..218cb58be9bb5 100644 --- a/recipes/bioconductor-hmmcopy/meta.yaml +++ b/recipes/bioconductor-hmmcopy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e18ef3f2af6b9d913c127002b9ca729b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hmp16sdata/meta.yaml b/recipes/bioconductor-hmp16sdata/meta.yaml index f697f707416f9..d2fd416364a59 100644 --- a/recipes/bioconductor-hmp16sdata/meta.yaml +++ b/recipes/bioconductor-hmp16sdata/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.3.2" %} +{% set version = "1.4.1" %} {% set name = "HMP16SData" %} {% set bioc = "3.9" %} @@ -10,9 +10,9 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: af1f24921e331d20bb1181483588a36d + md5: a0bd3005be9fff33b7c6e07ba303664f build: - number: 1 + number: 0 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hmp16sdata/post-link.sh b/recipes/bioconductor-hmp16sdata/post-link.sh index d3aa1de38712a..03a151f95ade7 100644 --- a/recipes/bioconductor-hmp16sdata/post-link.sh +++ b/recipes/bioconductor-hmp16sdata/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="HMP16SData_1.3.2.tar.gz" +FN="HMP16SData_1.4.1.tar.gz" URLS=( - "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HMP16SData_1.3.2.tar.gz" - "https://bioarchive.galaxyproject.org/HMP16SData_1.3.2.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-hmp16sdata/bioconductor-hmp16sdata_1.3.2_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HMP16SData_1.4.1.tar.gz" + "https://bioarchive.galaxyproject.org/HMP16SData_1.4.1.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hmp16sdata/bioconductor-hmp16sdata_1.4.1_src_all.tar.gz" ) -MD5="af1f24921e331d20bb1181483588a36d" +MD5="a0bd3005be9fff33b7c6e07ba303664f" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable diff --git a/recipes/bioconductor-hmyrib36/meta.yaml b/recipes/bioconductor-hmyrib36/meta.yaml index b1b20bda1b29d..16760ad6891ca 100644 --- a/recipes/bioconductor-hmyrib36/meta.yaml +++ b/recipes/bioconductor-hmyrib36/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e08284e8555bcedcdbdb4b1aa677b748 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hmyrib36/post-link.sh b/recipes/bioconductor-hmyrib36/post-link.sh index 6447498c8c9af..3ed22122ee3d0 100644 --- a/recipes/bioconductor-hmyrib36/post-link.sh +++ b/recipes/bioconductor-hmyrib36/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/hmyriB36_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/hmyriB36_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hmyrib36/bioconductor-hmyrib36_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hmyrib36/bioconductor-hmyrib36_1.20.0_src_all.tar.gz" ) MD5="e08284e8555bcedcdbdb4b1aa677b748" diff --git a/recipes/bioconductor-hom.at.inp.db/meta.yaml b/recipes/bioconductor-hom.at.inp.db/meta.yaml index 7977d4e1bf7a0..188d1ea587e2c 100644 --- a/recipes/bioconductor-hom.at.inp.db/meta.yaml +++ b/recipes/bioconductor-hom.at.inp.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9d96d343202848e129b96e5e234bd269 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hom.ce.inp.db/meta.yaml b/recipes/bioconductor-hom.ce.inp.db/meta.yaml index a45fddc2659ad..aaad74c431b42 100644 --- a/recipes/bioconductor-hom.ce.inp.db/meta.yaml +++ b/recipes/bioconductor-hom.ce.inp.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 914b04390edfc06466fddd3bab1a5806 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hom.dm.inp.db/meta.yaml b/recipes/bioconductor-hom.dm.inp.db/meta.yaml index 3858d54b6fdb2..84977eb8bd4ae 100644 --- a/recipes/bioconductor-hom.dm.inp.db/meta.yaml +++ b/recipes/bioconductor-hom.dm.inp.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 24599bd0267b6b6f83d9a27d42d72221 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hom.dr.inp.db/meta.yaml b/recipes/bioconductor-hom.dr.inp.db/meta.yaml index 8b53c80b988f6..e0982c0fd8d60 100644 --- a/recipes/bioconductor-hom.dr.inp.db/meta.yaml +++ b/recipes/bioconductor-hom.dr.inp.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d3e588cb6116354605a024ed3e7f5c4e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hom.hs.inp.db/meta.yaml b/recipes/bioconductor-hom.hs.inp.db/meta.yaml index 73b10332e81a1..1f63c3d77d820 100644 --- a/recipes/bioconductor-hom.hs.inp.db/meta.yaml +++ b/recipes/bioconductor-hom.hs.inp.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b0708148e9c6656527e004fbaf80c05c build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hom.mm.inp.db/meta.yaml b/recipes/bioconductor-hom.mm.inp.db/meta.yaml index eb2c910298d8b..1f67fb00d0f6d 100644 --- a/recipes/bioconductor-hom.mm.inp.db/meta.yaml +++ b/recipes/bioconductor-hom.mm.inp.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 27d49db64f3f6049210456121f33d6c0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hom.rn.inp.db/meta.yaml b/recipes/bioconductor-hom.rn.inp.db/meta.yaml index 64bacdf68c7b4..19fce460d2d76 100644 --- a/recipes/bioconductor-hom.rn.inp.db/meta.yaml +++ b/recipes/bioconductor-hom.rn.inp.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 17cf02b55681712da40405ffcd81ea5b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hom.sc.inp.db/meta.yaml b/recipes/bioconductor-hom.sc.inp.db/meta.yaml index b6b04e4793b48..24304d7086881 100644 --- a/recipes/bioconductor-hom.sc.inp.db/meta.yaml +++ b/recipes/bioconductor-hom.sc.inp.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e3f58421e9067e8109e3e077b0109511 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-homo.sapiens/meta.yaml b/recipes/bioconductor-homo.sapiens/meta.yaml index 06c4447904d0d..6770fb412b808 100644 --- a/recipes/bioconductor-homo.sapiens/meta.yaml +++ b/recipes/bioconductor-homo.sapiens/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 653b60cfcdaefd171729115cd629b585 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hopach/meta.yaml b/recipes/bioconductor-hopach/meta.yaml index 989ea7bfb0031..88bf00eb00798 100644 --- a/recipes/bioconductor-hopach/meta.yaml +++ b/recipes/bioconductor-hopach/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a38ccfbd7bd30f6258d05248aea93788 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hpaanalyze/meta.yaml b/recipes/bioconductor-hpaanalyze/meta.yaml index 99c29c57ea1d0..28be4f539e689 100644 --- a/recipes/bioconductor-hpaanalyze/meta.yaml +++ b/recipes/bioconductor-hpaanalyze/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.1" %} {% set name = "HPAanalyze" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: a9b46d0c9adc901e15595ec3e0416312 + md5: 6aa86b4a8d20f43ee34299a921ad326c build: number: 0 rpaths: @@ -22,26 +22,22 @@ requirements: host: - 'bioconductor-hpar >=1.26.0,<1.27.0' - r-base - - r-cowplot - r-dplyr - r-ggplot2 - - r-magrittr + - r-gridextra - r-openxlsx - r-readr - - r-reshape2 - r-tibble - r-tidyr - r-xml2 run: - 'bioconductor-hpar >=1.26.0,<1.27.0' - r-base - - r-cowplot - r-dplyr - r-ggplot2 - - r-magrittr + - r-gridextra - r-openxlsx - r-readr - - r-reshape2 - r-tibble - r-tidyr - r-xml2 diff --git a/recipes/bioconductor-hpannot/meta.yaml b/recipes/bioconductor-hpannot/meta.yaml index d36254df7d99b..0e2708e9274e6 100644 --- a/recipes/bioconductor-hpannot/meta.yaml +++ b/recipes/bioconductor-hpannot/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7a1254a1d184b1a065f5f24d266cebdc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hpannot/post-link.sh b/recipes/bioconductor-hpannot/post-link.sh index 22dd97b538f66..d14d51a960ea4 100644 --- a/recipes/bioconductor-hpannot/post-link.sh +++ b/recipes/bioconductor-hpannot/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/hpAnnot_1.0.1.tar.gz" "https://bioarchive.galaxyproject.org/hpAnnot_1.0.1.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hpannot/bioconductor-hpannot_1.0.1_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hpannot/bioconductor-hpannot_1.0.1_src_all.tar.gz" ) MD5="7a1254a1d184b1a065f5f24d266cebdc" diff --git a/recipes/bioconductor-hpar/meta.yaml b/recipes/bioconductor-hpar/meta.yaml index cba2db58a93a6..e77aebb243fe8 100644 --- a/recipes/bioconductor-hpar/meta.yaml +++ b/recipes/bioconductor-hpar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c4c17d1b40dd4a13e17a570ebae93480 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hs25kresogen.db/meta.yaml b/recipes/bioconductor-hs25kresogen.db/meta.yaml index 668a0f2b1ce1c..e5e29f047002a 100644 --- a/recipes/bioconductor-hs25kresogen.db/meta.yaml +++ b/recipes/bioconductor-hs25kresogen.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a3800d072ce0e5f6f5d8299538b99cca build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hs6ug171.db/meta.yaml b/recipes/bioconductor-hs6ug171.db/meta.yaml index c30c7a918a28f..1898653aa525e 100644 --- a/recipes/bioconductor-hs6ug171.db/meta.yaml +++ b/recipes/bioconductor-hs6ug171.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7aaf8a2441941f70247275c93735ed3b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hsagilentdesign026652.db/meta.yaml b/recipes/bioconductor-hsagilentdesign026652.db/meta.yaml index 2124675f72b50..b4d67d499a9e0 100644 --- a/recipes/bioconductor-hsagilentdesign026652.db/meta.yaml +++ b/recipes/bioconductor-hsagilentdesign026652.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dcd2c748bf9d7c002611cd5cf2ff38c0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hsmmsinglecell/meta.yaml b/recipes/bioconductor-hsmmsinglecell/meta.yaml index 22e9b306951f4..8097c2a2ad992 100644 --- a/recipes/bioconductor-hsmmsinglecell/meta.yaml +++ b/recipes/bioconductor-hsmmsinglecell/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ee141b0de4637baf95d871cb0ff163b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hsmmsinglecell/post-link.sh b/recipes/bioconductor-hsmmsinglecell/post-link.sh index 591fac6e4dc86..63954b8a84b19 100644 --- a/recipes/bioconductor-hsmmsinglecell/post-link.sh +++ b/recipes/bioconductor-hsmmsinglecell/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HSMMSingleCell_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/HSMMSingleCell_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-hsmmsinglecell/bioconductor-hsmmsinglecell_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-hsmmsinglecell/bioconductor-hsmmsinglecell_1.4.0_src_all.tar.gz" ) MD5="8ee141b0de4637baf95d871cb0ff163b" diff --git a/recipes/bioconductor-hspec/meta.yaml b/recipes/bioconductor-hspec/meta.yaml index 3703b81594872..231c7304e7245 100644 --- a/recipes/bioconductor-hspec/meta.yaml +++ b/recipes/bioconductor-hspec/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0ade3e3147c8f0086e9be2312cccdfeb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hspeccdf/meta.yaml b/recipes/bioconductor-hspeccdf/meta.yaml index b67a199b314c3..d45fdd70f3f63 100644 --- a/recipes/bioconductor-hspeccdf/meta.yaml +++ b/recipes/bioconductor-hspeccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 89f81adf91094710558ce6aec79fc7fd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hta20probeset.db/meta.yaml b/recipes/bioconductor-hta20probeset.db/meta.yaml index aa748fa1573c3..425ac1d4dec2b 100644 --- a/recipes/bioconductor-hta20probeset.db/meta.yaml +++ b/recipes/bioconductor-hta20probeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d2123b0ecd324626b06a920f947a114e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hta20transcriptcluster.db/meta.yaml b/recipes/bioconductor-hta20transcriptcluster.db/meta.yaml index b68fb4d54889b..f84ec77746a1c 100644 --- a/recipes/bioconductor-hta20transcriptcluster.db/meta.yaml +++ b/recipes/bioconductor-hta20transcriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c7cdfe80bf2f7aa86fa3caff6da0c34c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133a.db/meta.yaml b/recipes/bioconductor-hthgu133a.db/meta.yaml index a58481e7d7291..a829f11a2c6b0 100644 --- a/recipes/bioconductor-hthgu133a.db/meta.yaml +++ b/recipes/bioconductor-hthgu133a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: df8c18dcb8d0adfb6f7a9306cbe9b162 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133acdf/meta.yaml b/recipes/bioconductor-hthgu133acdf/meta.yaml index e880e96e4adbe..29fca2cc7db2f 100644 --- a/recipes/bioconductor-hthgu133acdf/meta.yaml +++ b/recipes/bioconductor-hthgu133acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b92e543867f1f0c08bfa9299e123d608 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133afrmavecs/meta.yaml b/recipes/bioconductor-hthgu133afrmavecs/meta.yaml index d51529116b1d2..5dc6678dd655d 100644 --- a/recipes/bioconductor-hthgu133afrmavecs/meta.yaml +++ b/recipes/bioconductor-hthgu133afrmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: be3f3d67a94dca3b080c184fba5ff6d8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133aprobe/meta.yaml b/recipes/bioconductor-hthgu133aprobe/meta.yaml index 5489ff8a6b073..ff7b2989b020d 100644 --- a/recipes/bioconductor-hthgu133aprobe/meta.yaml +++ b/recipes/bioconductor-hthgu133aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cdc17ea670719f055ee75bea1415c754 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133b.db/meta.yaml b/recipes/bioconductor-hthgu133b.db/meta.yaml index d2bf6540803bd..a54279845035f 100644 --- a/recipes/bioconductor-hthgu133b.db/meta.yaml +++ b/recipes/bioconductor-hthgu133b.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a6dfceb47a306ec5365d8376dbb036c7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133bcdf/meta.yaml b/recipes/bioconductor-hthgu133bcdf/meta.yaml index 57c64805ed04b..0670947e44a03 100644 --- a/recipes/bioconductor-hthgu133bcdf/meta.yaml +++ b/recipes/bioconductor-hthgu133bcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 935ae53fb168d9c7890d71020ef4c366 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133bprobe/meta.yaml b/recipes/bioconductor-hthgu133bprobe/meta.yaml index e0a3978b2875b..6a58612700c2e 100644 --- a/recipes/bioconductor-hthgu133bprobe/meta.yaml +++ b/recipes/bioconductor-hthgu133bprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8a2e306638a81fdec3b10a014c04c6b9 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133pluspmcdf/meta.yaml b/recipes/bioconductor-hthgu133pluspmcdf/meta.yaml index b1227f5601495..b94a7b200cc79 100644 --- a/recipes/bioconductor-hthgu133pluspmcdf/meta.yaml +++ b/recipes/bioconductor-hthgu133pluspmcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 56d15101d59decac7811caa15b349a9c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hthgu133pluspmprobe/meta.yaml b/recipes/bioconductor-hthgu133pluspmprobe/meta.yaml index b4b29053714f6..b921d17d59174 100644 --- a/recipes/bioconductor-hthgu133pluspmprobe/meta.yaml +++ b/recipes/bioconductor-hthgu133pluspmprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 74713e822a689007892d0eb92dbd456b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htmg430acdf/meta.yaml b/recipes/bioconductor-htmg430acdf/meta.yaml index 86d80f02e3caa..d2c5d56e1f944 100644 --- a/recipes/bioconductor-htmg430acdf/meta.yaml +++ b/recipes/bioconductor-htmg430acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: aef7a3c3af7d2624ee6fc6f2d22472e2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htmg430aprobe/meta.yaml b/recipes/bioconductor-htmg430aprobe/meta.yaml index a80e460c160c1..a5244a3c99939 100644 --- a/recipes/bioconductor-htmg430aprobe/meta.yaml +++ b/recipes/bioconductor-htmg430aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e50cc49b8887b6ef8ee1152ec12d5010 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htmg430bcdf/meta.yaml b/recipes/bioconductor-htmg430bcdf/meta.yaml index 568023f6b2f6f..8f9162ed460f5 100644 --- a/recipes/bioconductor-htmg430bcdf/meta.yaml +++ b/recipes/bioconductor-htmg430bcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 53cc1408504a5f07b5655aa46b969157 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htmg430bprobe/meta.yaml b/recipes/bioconductor-htmg430bprobe/meta.yaml index 197a6f7708e95..2dbf5aeefa66d 100644 --- a/recipes/bioconductor-htmg430bprobe/meta.yaml +++ b/recipes/bioconductor-htmg430bprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f0e3eb56925d786762dee0c2dc82b530 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htmg430pmcdf/meta.yaml b/recipes/bioconductor-htmg430pmcdf/meta.yaml index f47a47db644aa..be07c961e9153 100644 --- a/recipes/bioconductor-htmg430pmcdf/meta.yaml +++ b/recipes/bioconductor-htmg430pmcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 016a54b47adbbed7db989787646a0084 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htmg430pmprobe/meta.yaml b/recipes/bioconductor-htmg430pmprobe/meta.yaml index 1341d9e6650ce..67e9752e352ee 100644 --- a/recipes/bioconductor-htmg430pmprobe/meta.yaml +++ b/recipes/bioconductor-htmg430pmprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f0e053fcc0ca4b5f8c539fc0a3fcb076 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htqpcr/meta.yaml b/recipes/bioconductor-htqpcr/meta.yaml index ee3ab0ef7c6eb..4f28be66c8c7d 100644 --- a/recipes/bioconductor-htqpcr/meta.yaml +++ b/recipes/bioconductor-htqpcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cbef56085d20388836c255a4db656852 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htrat230pmcdf/meta.yaml b/recipes/bioconductor-htrat230pmcdf/meta.yaml index da34afe1da5d4..266a3c2bbfbd7 100644 --- a/recipes/bioconductor-htrat230pmcdf/meta.yaml +++ b/recipes/bioconductor-htrat230pmcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c6683d16e8aacccd326f7a7eebb79b98 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htrat230pmprobe/meta.yaml b/recipes/bioconductor-htrat230pmprobe/meta.yaml index 94c8bd848a520..c3d07fcc73bbc 100644 --- a/recipes/bioconductor-htrat230pmprobe/meta.yaml +++ b/recipes/bioconductor-htrat230pmprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e4deeca2dc406367ac4a347e370267cf build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htratfocuscdf/meta.yaml b/recipes/bioconductor-htratfocuscdf/meta.yaml index 8aad0476d6e8b..462288043286f 100644 --- a/recipes/bioconductor-htratfocuscdf/meta.yaml +++ b/recipes/bioconductor-htratfocuscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 04b4952f7d8b607a7eb0f779c08c57dc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htratfocusprobe/meta.yaml b/recipes/bioconductor-htratfocusprobe/meta.yaml index 788476fe1615b..c69a5b2194b3b 100644 --- a/recipes/bioconductor-htratfocusprobe/meta.yaml +++ b/recipes/bioconductor-htratfocusprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 26a0963d8aff314a4a1f2c47e9147a8a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htsanalyzer/meta.yaml b/recipes/bioconductor-htsanalyzer/meta.yaml index d641ffc5d7cf0..1ab20d3da4b73 100644 --- a/recipes/bioconductor-htsanalyzer/meta.yaml +++ b/recipes/bioconductor-htsanalyzer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b9f2093f422cb35e3f3fe2f4730ae15f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htseqgenie/meta.yaml b/recipes/bioconductor-htseqgenie/meta.yaml index 1051139ed7839..4026b1ef85e2f 100644 --- a/recipes/bioconductor-htseqgenie/meta.yaml +++ b/recipes/bioconductor-htseqgenie/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d46082df22d3f967a24751a34d62a293 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htseqtools/meta.yaml b/recipes/bioconductor-htseqtools/meta.yaml index e20bd51f89f3c..df8b9052c91d6 100644 --- a/recipes/bioconductor-htseqtools/meta.yaml +++ b/recipes/bioconductor-htseqtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 67c17cf06f81100c8d00c6e62abb7a56 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-htsfilter/meta.yaml b/recipes/bioconductor-htsfilter/meta.yaml index ffa2155e44ddf..1f117e4f4afc9 100644 --- a/recipes/bioconductor-htsfilter/meta.yaml +++ b/recipes/bioconductor-htsfilter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 81e0bf6630e03003acf58479e7a2dff1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksuba.db/meta.yaml b/recipes/bioconductor-hu35ksuba.db/meta.yaml index 04eefb355a67e..0068a8adc9766 100644 --- a/recipes/bioconductor-hu35ksuba.db/meta.yaml +++ b/recipes/bioconductor-hu35ksuba.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eef6de6790e904d0b63a3ec8faba2962 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubacdf/meta.yaml b/recipes/bioconductor-hu35ksubacdf/meta.yaml index 5170ddd8669fd..6081e1761f579 100644 --- a/recipes/bioconductor-hu35ksubacdf/meta.yaml +++ b/recipes/bioconductor-hu35ksubacdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c8b82c4755eb62818ca0dbf22de5d25e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubaprobe/meta.yaml b/recipes/bioconductor-hu35ksubaprobe/meta.yaml index e45563099cd75..e6921581484d5 100644 --- a/recipes/bioconductor-hu35ksubaprobe/meta.yaml +++ b/recipes/bioconductor-hu35ksubaprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 49bd19ec3b6404211f2e410e473fa644 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubb.db/meta.yaml b/recipes/bioconductor-hu35ksubb.db/meta.yaml index ea5681249e142..b4b5130552efc 100644 --- a/recipes/bioconductor-hu35ksubb.db/meta.yaml +++ b/recipes/bioconductor-hu35ksubb.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b49fc7bda2b0879d1be1ac0061a7ea98 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubbcdf/meta.yaml b/recipes/bioconductor-hu35ksubbcdf/meta.yaml index 482eb4d96a6d1..db6dd17e82860 100644 --- a/recipes/bioconductor-hu35ksubbcdf/meta.yaml +++ b/recipes/bioconductor-hu35ksubbcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d873b6c521e926b331f799baf10a4e13 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubbprobe/meta.yaml b/recipes/bioconductor-hu35ksubbprobe/meta.yaml index 2bcc9da599fef..a1e283e9a9fa7 100644 --- a/recipes/bioconductor-hu35ksubbprobe/meta.yaml +++ b/recipes/bioconductor-hu35ksubbprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0a63051d0faf38a56f17d5865cbed9b1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubc.db/meta.yaml b/recipes/bioconductor-hu35ksubc.db/meta.yaml index 38c89c6f73c22..0d89c4f9ad9c8 100644 --- a/recipes/bioconductor-hu35ksubc.db/meta.yaml +++ b/recipes/bioconductor-hu35ksubc.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f3c215dc2ddbab7ddcdbf015495f87b3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubccdf/meta.yaml b/recipes/bioconductor-hu35ksubccdf/meta.yaml index cd2821d9f86e2..b1611f3a6b18a 100644 --- a/recipes/bioconductor-hu35ksubccdf/meta.yaml +++ b/recipes/bioconductor-hu35ksubccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: de96e69680c5f8747c99d170272d7c3c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubcprobe/meta.yaml b/recipes/bioconductor-hu35ksubcprobe/meta.yaml index 74e46696a0807..8ce0c262b283f 100644 --- a/recipes/bioconductor-hu35ksubcprobe/meta.yaml +++ b/recipes/bioconductor-hu35ksubcprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b10453ea061b09172192bd21baa9083d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubd.db/meta.yaml b/recipes/bioconductor-hu35ksubd.db/meta.yaml index 22d7c80ebe0ee..3528aa201b325 100644 --- a/recipes/bioconductor-hu35ksubd.db/meta.yaml +++ b/recipes/bioconductor-hu35ksubd.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9b8f09012d27c7b41e0d20321d83a625 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubdcdf/meta.yaml b/recipes/bioconductor-hu35ksubdcdf/meta.yaml index 1622258bb154d..6df61588b0f43 100644 --- a/recipes/bioconductor-hu35ksubdcdf/meta.yaml +++ b/recipes/bioconductor-hu35ksubdcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6f6423426969f306fb0d5171e75b5380 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu35ksubdprobe/meta.yaml b/recipes/bioconductor-hu35ksubdprobe/meta.yaml index 1bc55d73f07ef..f742e26c6ccee 100644 --- a/recipes/bioconductor-hu35ksubdprobe/meta.yaml +++ b/recipes/bioconductor-hu35ksubdprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 430a9b8ccd646d8cb06e6c1d750eec23 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu6800.db/meta.yaml b/recipes/bioconductor-hu6800.db/meta.yaml index 1b723983beb81..76c0e973a7e09 100644 --- a/recipes/bioconductor-hu6800.db/meta.yaml +++ b/recipes/bioconductor-hu6800.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7783c1539639aec9d3d736e38b4f028c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu6800cdf/meta.yaml b/recipes/bioconductor-hu6800cdf/meta.yaml index c4df2138c8a91..06619bff937c5 100644 --- a/recipes/bioconductor-hu6800cdf/meta.yaml +++ b/recipes/bioconductor-hu6800cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fa2b2ab8f3aba517c63ad2e65873d2f0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu6800probe/meta.yaml b/recipes/bioconductor-hu6800probe/meta.yaml index c25c40f7bd23e..03a4d017c5668 100644 --- a/recipes/bioconductor-hu6800probe/meta.yaml +++ b/recipes/bioconductor-hu6800probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7a2383bd870cbc0628c210174e911250 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu6800subacdf/meta.yaml b/recipes/bioconductor-hu6800subacdf/meta.yaml index 6916e94adcc87..4eb5d3461665c 100644 --- a/recipes/bioconductor-hu6800subacdf/meta.yaml +++ b/recipes/bioconductor-hu6800subacdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9e8ec301e066e400564976cd9750297e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu6800subbcdf/meta.yaml b/recipes/bioconductor-hu6800subbcdf/meta.yaml index bdc3b54e82ca6..76ea80355ce24 100644 --- a/recipes/bioconductor-hu6800subbcdf/meta.yaml +++ b/recipes/bioconductor-hu6800subbcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 529aad5e4e73594c8cb66274d7e4adc5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu6800subccdf/meta.yaml b/recipes/bioconductor-hu6800subccdf/meta.yaml index 4df494b2a1bbf..6cf09563c9410 100644 --- a/recipes/bioconductor-hu6800subccdf/meta.yaml +++ b/recipes/bioconductor-hu6800subccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 020fe3a6bdf44efbde15432b968433e8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hu6800subdcdf/meta.yaml b/recipes/bioconductor-hu6800subdcdf/meta.yaml index c291a458050f5..4d8af43970fbb 100644 --- a/recipes/bioconductor-hu6800subdcdf/meta.yaml +++ b/recipes/bioconductor-hu6800subdcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7966c21babb23e18cca4faafc8720f0a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-huex.1.0.st.v2frmavecs/meta.yaml b/recipes/bioconductor-huex.1.0.st.v2frmavecs/meta.yaml index d7e49faf3f74c..971aaad4d6116 100644 --- a/recipes/bioconductor-huex.1.0.st.v2frmavecs/meta.yaml +++ b/recipes/bioconductor-huex.1.0.st.v2frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 982935d07b526ff555790e309fe4147e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-huex10stprobeset.db/meta.yaml b/recipes/bioconductor-huex10stprobeset.db/meta.yaml index 35d16b0c80600..62fa8c9a19731 100644 --- a/recipes/bioconductor-huex10stprobeset.db/meta.yaml +++ b/recipes/bioconductor-huex10stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 52cf39820872de4ac5529aa1192328b5 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-huex10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-huex10sttranscriptcluster.db/meta.yaml index 6719e6041a28f..88012572e269a 100644 --- a/recipes/bioconductor-huex10sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-huex10sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7fb762002b5792c64ccafbd7bacf92a4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-huexexonprobesetlocation/meta.yaml b/recipes/bioconductor-huexexonprobesetlocation/meta.yaml index 8a66cad788db1..122a344b34882 100644 --- a/recipes/bioconductor-huexexonprobesetlocation/meta.yaml +++ b/recipes/bioconductor-huexexonprobesetlocation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 11bf1b88d9e90711b4064497f611da4f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-huexexonprobesetlocationhg18/meta.yaml b/recipes/bioconductor-huexexonprobesetlocationhg18/meta.yaml index b9298bc18150b..aad12ee7ea411 100644 --- a/recipes/bioconductor-huexexonprobesetlocationhg18/meta.yaml +++ b/recipes/bioconductor-huexexonprobesetlocationhg18/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bb00b7f5e4db2b04dca5951aa6bd073e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-huexexonprobesetlocationhg19/meta.yaml b/recipes/bioconductor-huexexonprobesetlocationhg19/meta.yaml index 09ca335c33def..2260f5d65ba71 100644 --- a/recipes/bioconductor-huexexonprobesetlocationhg19/meta.yaml +++ b/recipes/bioconductor-huexexonprobesetlocationhg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1a3843c95c82dc71a043d902961ba33a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene.1.0.st.v1frmavecs/meta.yaml b/recipes/bioconductor-hugene.1.0.st.v1frmavecs/meta.yaml index 3b0a111b19c1c..c5ebe09668577 100644 --- a/recipes/bioconductor-hugene.1.0.st.v1frmavecs/meta.yaml +++ b/recipes/bioconductor-hugene.1.0.st.v1frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 711a69e6fa6dd3737a90615222416dfc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene10stprobeset.db/meta.yaml b/recipes/bioconductor-hugene10stprobeset.db/meta.yaml index f1662525d40b8..035ffd6a96f46 100644 --- a/recipes/bioconductor-hugene10stprobeset.db/meta.yaml +++ b/recipes/bioconductor-hugene10stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8c138a26b4aa0391edd69ef6abed3247 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-hugene10sttranscriptcluster.db/meta.yaml index 47ca2ba952078..84119e6020023 100644 --- a/recipes/bioconductor-hugene10sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-hugene10sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d38c7a0fb26410d420e72c6aacf622ad build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene10stv1cdf/meta.yaml b/recipes/bioconductor-hugene10stv1cdf/meta.yaml index c6a6398f695e3..02f615283ef80 100644 --- a/recipes/bioconductor-hugene10stv1cdf/meta.yaml +++ b/recipes/bioconductor-hugene10stv1cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f1fb1c7076ac40b9e709f18e645d6181 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene10stv1probe/meta.yaml b/recipes/bioconductor-hugene10stv1probe/meta.yaml index cb7cd614e7a51..82843e2874a59 100644 --- a/recipes/bioconductor-hugene10stv1probe/meta.yaml +++ b/recipes/bioconductor-hugene10stv1probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6ed3c17dd026acf008658a5994044c62 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene11stprobeset.db/meta.yaml b/recipes/bioconductor-hugene11stprobeset.db/meta.yaml index 3c4cb0c1ad466..a96128e6a4dc6 100644 --- a/recipes/bioconductor-hugene11stprobeset.db/meta.yaml +++ b/recipes/bioconductor-hugene11stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 315c1dff0ba5240c6c5432d0dcc11eb1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene11sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-hugene11sttranscriptcluster.db/meta.yaml index 93e2a7d09259a..71d5775d2f4b9 100644 --- a/recipes/bioconductor-hugene11sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-hugene11sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0d366281eac2cba4b1fcfbe48596975a build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene20stprobeset.db/meta.yaml b/recipes/bioconductor-hugene20stprobeset.db/meta.yaml index 73ffbea64e04b..3d6f9b5347102 100644 --- a/recipes/bioconductor-hugene20stprobeset.db/meta.yaml +++ b/recipes/bioconductor-hugene20stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 17e599fe0f885f17de29a6174324054d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene20sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-hugene20sttranscriptcluster.db/meta.yaml index df9ef34cd02c8..d8df622bd4351 100644 --- a/recipes/bioconductor-hugene20sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-hugene20sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 85b23453d8e7c6c92673deaa7a82e51e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene21stprobeset.db/meta.yaml b/recipes/bioconductor-hugene21stprobeset.db/meta.yaml index 6da6a21a8143c..760195f878559 100644 --- a/recipes/bioconductor-hugene21stprobeset.db/meta.yaml +++ b/recipes/bioconductor-hugene21stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ad101fb652b87da23d17547268019bb8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hugene21sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-hugene21sttranscriptcluster.db/meta.yaml index cd2a167391ca5..562385b41a397 100644 --- a/recipes/bioconductor-hugene21sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-hugene21sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7d4d913f3e48f3eab45e036323d223b5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human.db0/meta.yaml b/recipes/bioconductor-human.db0/meta.yaml index 854b150526876..8d8f4a522b32c 100644 --- a/recipes/bioconductor-human.db0/meta.yaml +++ b/recipes/bioconductor-human.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b150cae85c2594ebb694fa1996895ac0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human.db0/post-link.sh b/recipes/bioconductor-human.db0/post-link.sh index c0e1b85c89583..022a86d7746b2 100644 --- a/recipes/bioconductor-human.db0/post-link.sh +++ b/recipes/bioconductor-human.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/human.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/human.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-human.db0/bioconductor-human.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-human.db0/bioconductor-human.db0_3.8.2_src_all.tar.gz" ) MD5="b150cae85c2594ebb694fa1996895ac0" diff --git a/recipes/bioconductor-human1mduov3bcrlmm/meta.yaml b/recipes/bioconductor-human1mduov3bcrlmm/meta.yaml index 4f520946bea50..2ff396cf80406 100644 --- a/recipes/bioconductor-human1mduov3bcrlmm/meta.yaml +++ b/recipes/bioconductor-human1mduov3bcrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0ff9f1e8bcc6348d6777bbb982ae0325 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human1mv1ccrlmm/meta.yaml b/recipes/bioconductor-human1mv1ccrlmm/meta.yaml index a4c3f8d392c55..71a40e65e6495 100644 --- a/recipes/bioconductor-human1mv1ccrlmm/meta.yaml +++ b/recipes/bioconductor-human1mv1ccrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b9f638c7b0ede50cb070f1bae85eb4dc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human370quadv3ccrlmm/meta.yaml b/recipes/bioconductor-human370quadv3ccrlmm/meta.yaml index 30c30f76ee59e..91583d1363e6b 100644 --- a/recipes/bioconductor-human370quadv3ccrlmm/meta.yaml +++ b/recipes/bioconductor-human370quadv3ccrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 33c3ccc3793ed95647418b746a5177f9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human370v1ccrlmm/meta.yaml b/recipes/bioconductor-human370v1ccrlmm/meta.yaml index 49aa59e8c3b0c..2877cab130552 100644 --- a/recipes/bioconductor-human370v1ccrlmm/meta.yaml +++ b/recipes/bioconductor-human370v1ccrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9ec4192f533faee2b14484de02548075 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human550v3bcrlmm/meta.yaml b/recipes/bioconductor-human550v3bcrlmm/meta.yaml index c349eb9b2da6f..f0490299b80ed 100644 --- a/recipes/bioconductor-human550v3bcrlmm/meta.yaml +++ b/recipes/bioconductor-human550v3bcrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 20e6b008fab5e1084354c87ad50d18a8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human610quadv1bcrlmm/meta.yaml b/recipes/bioconductor-human610quadv1bcrlmm/meta.yaml index b696357fcdddb..c08b441106132 100644 --- a/recipes/bioconductor-human610quadv1bcrlmm/meta.yaml +++ b/recipes/bioconductor-human610quadv1bcrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 609cf09410774e084ee6a3286652bb1a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human650v3acrlmm/meta.yaml b/recipes/bioconductor-human650v3acrlmm/meta.yaml index 1a336e9ff0bbf..8bce7982dd89f 100644 --- a/recipes/bioconductor-human650v3acrlmm/meta.yaml +++ b/recipes/bioconductor-human650v3acrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4b0de367ccc0f7499dcffe21ef1893c2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-human660quadv1acrlmm/meta.yaml b/recipes/bioconductor-human660quadv1acrlmm/meta.yaml index b2cddb6d0e9e4..97e76c6dfd709 100644 --- a/recipes/bioconductor-human660quadv1acrlmm/meta.yaml +++ b/recipes/bioconductor-human660quadv1acrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5fd2d94a462e150c888f13c5c0975c36 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humanaffydata/meta.yaml b/recipes/bioconductor-humanaffydata/meta.yaml index 03d8176edefbb..2be63ab99f5f8 100644 --- a/recipes/bioconductor-humanaffydata/meta.yaml +++ b/recipes/bioconductor-humanaffydata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d013a2b88fb9a47ff7cd962099c6fd28 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humanaffydata/post-link.sh b/recipes/bioconductor-humanaffydata/post-link.sh index a1389d26ff4c4..d997bf10e2b8d 100644 --- a/recipes/bioconductor-humanaffydata/post-link.sh +++ b/recipes/bioconductor-humanaffydata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/HumanAffyData_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/HumanAffyData_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-humanaffydata/bioconductor-humanaffydata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-humanaffydata/bioconductor-humanaffydata_1.10.0_src_all.tar.gz" ) MD5="d013a2b88fb9a47ff7cd962099c6fd28" diff --git a/recipes/bioconductor-humanchrloc/meta.yaml b/recipes/bioconductor-humanchrloc/meta.yaml index 0ef1ad097ae5a..194238e476a00 100644 --- a/recipes/bioconductor-humanchrloc/meta.yaml +++ b/recipes/bioconductor-humanchrloc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 113450c0822000c9b4e8a0141cf4b819 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humancytosnp12v2p1hcrlmm/meta.yaml b/recipes/bioconductor-humancytosnp12v2p1hcrlmm/meta.yaml index 9d742278759ca..e65e92c0a6387 100644 --- a/recipes/bioconductor-humancytosnp12v2p1hcrlmm/meta.yaml +++ b/recipes/bioconductor-humancytosnp12v2p1hcrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: edf80245ddb28afb9fbaa6668187bf3a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humanomni1quadv1bcrlmm/meta.yaml b/recipes/bioconductor-humanomni1quadv1bcrlmm/meta.yaml index e980b6992ab66..396fc9e797553 100644 --- a/recipes/bioconductor-humanomni1quadv1bcrlmm/meta.yaml +++ b/recipes/bioconductor-humanomni1quadv1bcrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e81b2603f37d4cda3f28cd69a7296a23 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humanomni25quadv1bcrlmm/meta.yaml b/recipes/bioconductor-humanomni25quadv1bcrlmm/meta.yaml index 694522881c4eb..8cf383cb394f8 100644 --- a/recipes/bioconductor-humanomni25quadv1bcrlmm/meta.yaml +++ b/recipes/bioconductor-humanomni25quadv1bcrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2ee1fa7bf712d7f81a167079c975d49f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humanomni5quadv1bcrlmm/meta.yaml b/recipes/bioconductor-humanomni5quadv1bcrlmm/meta.yaml index 103fbd1c4c050..d480b518596dc 100644 --- a/recipes/bioconductor-humanomni5quadv1bcrlmm/meta.yaml +++ b/recipes/bioconductor-humanomni5quadv1bcrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3ac4d6867c3d5590a6308d6edff0912b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humanomniexpress12v1bcrlmm/meta.yaml b/recipes/bioconductor-humanomniexpress12v1bcrlmm/meta.yaml index 35920c1cba561..5437710d9e966 100644 --- a/recipes/bioconductor-humanomniexpress12v1bcrlmm/meta.yaml +++ b/recipes/bioconductor-humanomniexpress12v1bcrlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: abdb730fc230db669e588e024ee7624b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humanstemcell/meta.yaml b/recipes/bioconductor-humanstemcell/meta.yaml index 1ae2875a122ef..a13e6569e167b 100644 --- a/recipes/bioconductor-humanstemcell/meta.yaml +++ b/recipes/bioconductor-humanstemcell/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c4dd3efd3d8f2024250bf8f0f0610e1b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-humanstemcell/post-link.sh b/recipes/bioconductor-humanstemcell/post-link.sh index f601515bcddce..529bbc6d1d2df 100644 --- a/recipes/bioconductor-humanstemcell/post-link.sh +++ b/recipes/bioconductor-humanstemcell/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/humanStemCell_0.24.0.tar.gz" "https://bioarchive.galaxyproject.org/humanStemCell_0.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-humanstemcell/bioconductor-humanstemcell_0.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-humanstemcell/bioconductor-humanstemcell_0.24.0_src_all.tar.gz" ) MD5="c4dd3efd3d8f2024250bf8f0f0610e1b" diff --git a/recipes/bioconductor-humantranscriptomecompendium/meta.yaml b/recipes/bioconductor-humantranscriptomecompendium/meta.yaml index 874626018a17e..170e377b18c8c 100644 --- a/recipes/bioconductor-humantranscriptomecompendium/meta.yaml +++ b/recipes/bioconductor-humantranscriptomecompendium/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 57b35d328e6a5a859ef4f27552f98955 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-huo22.db/meta.yaml b/recipes/bioconductor-huo22.db/meta.yaml index d53d07a7a61f3..7e4cbb2de4daf 100644 --- a/recipes/bioconductor-huo22.db/meta.yaml +++ b/recipes/bioconductor-huo22.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ddabf6c01f94c1dfd6ab35b40852828a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hwgcod.db/meta.yaml b/recipes/bioconductor-hwgcod.db/meta.yaml index f771438e6eae0..13a4d7132bc4a 100644 --- a/recipes/bioconductor-hwgcod.db/meta.yaml +++ b/recipes/bioconductor-hwgcod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a46bf1a242853bbab26351a11b18030a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hybridmtest/meta.yaml b/recipes/bioconductor-hybridmtest/meta.yaml index 61ec349295fcc..8d01832a01639 100644 --- a/recipes/bioconductor-hybridmtest/meta.yaml +++ b/recipes/bioconductor-hybridmtest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2adb9c6540ab27cedb4faa03e4583ac9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hyper/meta.yaml b/recipes/bioconductor-hyper/meta.yaml index 7ed9cb14184e9..c6c0d5afeb6a0 100644 --- a/recipes/bioconductor-hyper/meta.yaml +++ b/recipes/bioconductor-hyper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4f570fff06ca8963acdc11a0b8a3650b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-hyperdraw/meta.yaml b/recipes/bioconductor-hyperdraw/meta.yaml index 365ff7d2eeeee..cbdfda1bd00fa 100644 --- a/recipes/bioconductor-hyperdraw/meta.yaml +++ b/recipes/bioconductor-hyperdraw/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bee18ff39dabc8070d4158ab8744d35e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -24,13 +24,11 @@ requirements: - 'bioconductor-hypergraph >=1.56.0,<1.57.0' - 'bioconductor-rgraphviz >=2.28.0,<2.29.0' - r-base - - graphviz run: - 'bioconductor-graph >=1.62.0,<1.63.0' - 'bioconductor-hypergraph >=1.56.0,<1.57.0' - 'bioconductor-rgraphviz >=2.28.0,<2.29.0' - r-base - - graphviz test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-hypergraph/meta.yaml b/recipes/bioconductor-hypergraph/meta.yaml index bd62b74e2234f..951ef78a7c786 100644 --- a/recipes/bioconductor-hypergraph/meta.yaml +++ b/recipes/bioconductor-hypergraph/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1be01b3c5187c8683d98db1d2562b3eb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iaseq/meta.yaml b/recipes/bioconductor-iaseq/meta.yaml index ac509318fd3ca..6f90359d13e12 100644 --- a/recipes/bioconductor-iaseq/meta.yaml +++ b/recipes/bioconductor-iaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c075e378b12b5200ad884c08a9350651 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iasva/meta.yaml b/recipes/bioconductor-iasva/meta.yaml index 5af586a1fd975..ea8e9fe27480c 100644 --- a/recipes/bioconductor-iasva/meta.yaml +++ b/recipes/bioconductor-iasva/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 35ce6227d603e3cd72c02473af7e8a5b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ibbig/meta.yaml b/recipes/bioconductor-ibbig/meta.yaml index d3d3496a40711..e731b7032655f 100644 --- a/recipes/bioconductor-ibbig/meta.yaml +++ b/recipes/bioconductor-ibbig/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a8c422a7147d66279038caa3afbd353b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ibh/meta.yaml b/recipes/bioconductor-ibh/meta.yaml index a105c7d3d5b4a..1dd1fec52867b 100644 --- a/recipes/bioconductor-ibh/meta.yaml +++ b/recipes/bioconductor-ibh/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d647de7adf78295460f5242db08080d6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ibmq/meta.yaml b/recipes/bioconductor-ibmq/meta.yaml index 3631d527caff5..24425d0a6aec9 100644 --- a/recipes/bioconductor-ibmq/meta.yaml +++ b/recipes/bioconductor-ibmq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d578e07476692cef041d52c6e55c7a94 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,16 +22,12 @@ requirements: - 'bioconductor-biobase >=2.44.0,<2.45.0' - r-base - 'r-ggplot2 >=0.9.2' - - gsl run: - 'bioconductor-biobase >=2.44.0,<2.45.0' - r-base - 'r-ggplot2 >=0.9.2' - - gsl - - llvm-openmp # [osx] build: - {{ compiler('c') }} - - llvm-openmp # [osx] - automake - make test: diff --git a/recipes/bioconductor-icare/meta.yaml b/recipes/bioconductor-icare/meta.yaml index 261f14101d6e2..7cd64150811c2 100644 --- a/recipes/bioconductor-icare/meta.yaml +++ b/recipes/bioconductor-icare/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c919f4b68a344684f824fee6cc3cf899 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-icens/meta.yaml b/recipes/bioconductor-icens/meta.yaml index ef4fb50a73188..c92afae71de94 100644 --- a/recipes/bioconductor-icens/meta.yaml +++ b/recipes/bioconductor-icens/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5678e335cfd93285441e49987a9c6896 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-icetea/meta.yaml b/recipes/bioconductor-icetea/meta.yaml index 31501e9c7293f..d814317c0fc65 100644 --- a/recipes/bioconductor-icetea/meta.yaml +++ b/recipes/bioconductor-icetea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0e9cc78eaa1af347642bf79736f01f42 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-icheck/build.sh b/recipes/bioconductor-icheck/build.sh index c1d13421f5f1e..4b4a73a150a8f 100644 --- a/recipes/bioconductor-icheck/build.sh +++ b/recipes/bioconductor-icheck/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-icheck/meta.yaml b/recipes/bioconductor-icheck/meta.yaml index ce16fb5d9cc14..f9bf558134c08 100644 --- a/recipes/bioconductor-icheck/meta.yaml +++ b/recipes/bioconductor-icheck/meta.yaml @@ -12,12 +12,19 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 11e302f09eccac2f8ac6a5c774c9df7d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-affy >=1.62.0,<1.63.0' - 'bioconductor-biobase >=2.44.0,<2.45.0' @@ -48,7 +55,7 @@ requirements: - r-scatterplot3d test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>= 2)' @@ -56,4 +63,3 @@ about: extra: container: extended-base: true - diff --git a/recipes/bioconductor-ichip/meta.yaml b/recipes/bioconductor-ichip/meta.yaml index 91a60f0afea4c..b0349929bf7ca 100644 --- a/recipes/bioconductor-ichip/meta.yaml +++ b/recipes/bioconductor-ichip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c9a7577c9aa5e5deeb81cc7d75c92158 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iclusterplus/build.sh b/recipes/bioconductor-iclusterplus/build.sh index e4a35f042250a..c1d13421f5f1e 100644 --- a/recipes/bioconductor-iclusterplus/build.sh +++ b/recipes/bioconductor-iclusterplus/build.sh @@ -2,17 +2,10 @@ mv DESCRIPTION DESCRIPTION.old grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION mkdir -p ~/.R -if [[ "$HOST" == *"linux-gnu" ]]; then - ln -s $FC ${PREFIX}/bin/gfortran -fi echo -e "CC=$CC FC=$FC CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -sed -i.bak "s#FC=`grep '^FC ' ${R_HOME}/etc${R_ARCH}/Makeconf|cut -c6-`#FC=\"gfortran\"#" configure -$R CMD INSTALL --build . -if [[ "$HOST" == *"linux-gnu" ]]; then - rm ${PREFIX}/bin/gfortran -fi +$R CMD INSTALL --build . \ No newline at end of file diff --git a/recipes/bioconductor-iclusterplus/meta.yaml b/recipes/bioconductor-iclusterplus/meta.yaml index baf94ddcb7bda..54d80498f2236 100644 --- a/recipes/bioconductor-iclusterplus/meta.yaml +++ b/recipes/bioconductor-iclusterplus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eaa03f67d33b21acc645d6da575e8cbc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -20,8 +20,10 @@ build: requirements: host: - r-base + - expat run: - r-base + - expat build: - {{ compiler('c') }} - {{ compiler('fortran') }} diff --git a/recipes/bioconductor-icnv/meta.yaml b/recipes/bioconductor-icnv/meta.yaml index d65c8af0a70f6..c529da332b6ef 100644 --- a/recipes/bioconductor-icnv/meta.yaml +++ b/recipes/bioconductor-icnv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6bcbd715cf66112e385017113c0053ce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-icobra/meta.yaml b/recipes/bioconductor-icobra/meta.yaml index 7fee84fb0d3d9..a9909147c8406 100644 --- a/recipes/bioconductor-icobra/meta.yaml +++ b/recipes/bioconductor-icobra/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.0" %} +{% set version = "1.12.1" %} {% set name = "iCOBRA" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: ad14d6d8f8c46e9fc4ad287e2817fde0 + md5: 828a059e483805bce96828c45cf6e86e build: number: 0 rpaths: diff --git a/recipes/bioconductor-ideal/meta.yaml b/recipes/bioconductor-ideal/meta.yaml index 206ddb4f33d9e..e53d2b880b891 100644 --- a/recipes/bioconductor-ideal/meta.yaml +++ b/recipes/bioconductor-ideal/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2b1e74e31daa2cf05ec42f4a92fefe6b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ideoviz/meta.yaml b/recipes/bioconductor-ideoviz/meta.yaml index 57a0772fe245c..9feee1a60f310 100644 --- a/recipes/bioconductor-ideoviz/meta.yaml +++ b/recipes/bioconductor-ideoviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 34b57513cb86906e68de69fa85af6904 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-idiogram/meta.yaml b/recipes/bioconductor-idiogram/meta.yaml index 42f57b18e41e8..4730d7863292a 100644 --- a/recipes/bioconductor-idiogram/meta.yaml +++ b/recipes/bioconductor-idiogram/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2de17d1e45f463dc6fb1d54fde8b8520 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-idmappinganalysis/meta.yaml b/recipes/bioconductor-idmappinganalysis/meta.yaml index 4efc3ca442f35..d3476938cae38 100644 --- a/recipes/bioconductor-idmappinganalysis/meta.yaml +++ b/recipes/bioconductor-idmappinganalysis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 86f495894ba88140d217d1a26c492171 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-idmappingretrieval/meta.yaml b/recipes/bioconductor-idmappingretrieval/meta.yaml index 486ec4e339138..603d76ac2332a 100644 --- a/recipes/bioconductor-idmappingretrieval/meta.yaml +++ b/recipes/bioconductor-idmappingretrieval/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 227712f71934cd713feb497ceacb2849 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-igc/meta.yaml b/recipes/bioconductor-igc/meta.yaml index d9c3407795842..9df31e8daa53b 100644 --- a/recipes/bioconductor-igc/meta.yaml +++ b/recipes/bioconductor-igc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ec8a4c87e5d4db0f99530f45062fc34f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-igvr/meta.yaml b/recipes/bioconductor-igvr/meta.yaml index 3d661d45b00bd..f4640a87cc9a4 100644 --- a/recipes/bioconductor-igvr/meta.yaml +++ b/recipes/bioconductor-igvr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 40f1f3d7da5dd3bde91bcf550d964bec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ihw/meta.yaml b/recipes/bioconductor-ihw/meta.yaml index 190ff842d1eb8..d23e2be8ed1eb 100644 --- a/recipes/bioconductor-ihw/meta.yaml +++ b/recipes/bioconductor-ihw/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6a4b581a105d27072db9cb26a332de6e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ihwpaper/meta.yaml b/recipes/bioconductor-ihwpaper/meta.yaml index dc269791ce630..81519f1968212 100644 --- a/recipes/bioconductor-ihwpaper/meta.yaml +++ b/recipes/bioconductor-ihwpaper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e697c090241b0d3437827f2f375a4fcf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ihwpaper/post-link.sh b/recipes/bioconductor-ihwpaper/post-link.sh index ac06a6452315b..c39a4f0816938 100644 --- a/recipes/bioconductor-ihwpaper/post-link.sh +++ b/recipes/bioconductor-ihwpaper/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/IHWpaper_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/IHWpaper_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ihwpaper/bioconductor-ihwpaper_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ihwpaper/bioconductor-ihwpaper_1.12.0_src_all.tar.gz" ) MD5="e697c090241b0d3437827f2f375a4fcf" diff --git a/recipes/bioconductor-illumina450probevariants.db/meta.yaml b/recipes/bioconductor-illumina450probevariants.db/meta.yaml index 72368825bf810..9547e36acd55d 100644 --- a/recipes/bioconductor-illumina450probevariants.db/meta.yaml +++ b/recipes/bioconductor-illumina450probevariants.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 248d5c2f16cab95dafd3af53acd1b05f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illumina450probevariants.db/post-link.sh b/recipes/bioconductor-illumina450probevariants.db/post-link.sh index 40b1eaa78f90d..967aa727eb99d 100644 --- a/recipes/bioconductor-illumina450probevariants.db/post-link.sh +++ b/recipes/bioconductor-illumina450probevariants.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Illumina450ProbeVariants.db_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/Illumina450ProbeVariants.db_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-illumina450probevariants.db/bioconductor-illumina450probevariants.db_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-illumina450probevariants.db/bioconductor-illumina450probevariants.db_1.20.0_src_all.tar.gz" ) MD5="248d5c2f16cab95dafd3af53acd1b05f" diff --git a/recipes/bioconductor-illuminadatatestfiles/meta.yaml b/recipes/bioconductor-illuminadatatestfiles/meta.yaml index f4d079ae0708a..fe54cc28fbdee 100644 --- a/recipes/bioconductor-illuminadatatestfiles/meta.yaml +++ b/recipes/bioconductor-illuminadatatestfiles/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 546621b97e6be804d7e9db2262d4469e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminadatatestfiles/post-link.sh b/recipes/bioconductor-illuminadatatestfiles/post-link.sh index 261c188646bfe..ddc6a5fd932f5 100644 --- a/recipes/bioconductor-illuminadatatestfiles/post-link.sh +++ b/recipes/bioconductor-illuminadatatestfiles/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/IlluminaDataTestFiles_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/IlluminaDataTestFiles_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-illuminadatatestfiles/bioconductor-illuminadatatestfiles_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-illuminadatatestfiles/bioconductor-illuminadatatestfiles_1.22.0_src_all.tar.gz" ) MD5="546621b97e6be804d7e9db2262d4469e" diff --git a/recipes/bioconductor-illuminahumanmethylation27k.db/meta.yaml b/recipes/bioconductor-illuminahumanmethylation27k.db/meta.yaml index d170132ea9b6b..a168f107d9210 100644 --- a/recipes/bioconductor-illuminahumanmethylation27k.db/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylation27k.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 70586bda9db01d598723bb439c315367 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19/meta.yaml index 5bf6d59262eaf..29ce6d21eb845 100644 --- a/recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 765851336506120467c2e3cc6beef7ed build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylation27kmanifest/meta.yaml b/recipes/bioconductor-illuminahumanmethylation27kmanifest/meta.yaml index dbc5b18dd179c..b034fd29653f8 100644 --- a/recipes/bioconductor-illuminahumanmethylation27kmanifest/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylation27kmanifest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c4cdda637dccf85f193342c7262b02a6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19/meta.yaml index 151abc70a7b13..05b9332bd5236 100644 --- a/recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2f569646ca8adc49863224b1cd076a79 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylation450kmanifest/meta.yaml b/recipes/bioconductor-illuminahumanmethylation450kmanifest/meta.yaml index 78628288dccae..a4f1e4d72bd73 100644 --- a/recipes/bioconductor-illuminahumanmethylation450kmanifest/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylation450kmanifest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 664d1f5a3892974334faa26757269509 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylation450kprobe/meta.yaml b/recipes/bioconductor-illuminahumanmethylation450kprobe/meta.yaml index 9e8dd47bad330..75112659b9234 100644 --- a/recipes/bioconductor-illuminahumanmethylation450kprobe/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylation450kprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 84c31861fcbaddbf2a9c500b8d8d767d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19/meta.yaml index ac01bfbe8f117..d0a9ba49fc350 100644 --- a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6a8e2398a0f930aa7828a1412fb21e88 build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19/meta.yaml index 7ef4aeff18c33..c77b4a5bba57c 100644 --- a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2dac8e889486386eaea1bb7ce1beea2e build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19/meta.yaml index 0424f42f968a3..97ae4b16fedc5 100644 --- a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2d0c05917bcbf9ba1e354380d4e17a77 build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanmethylationepicmanifest/meta.yaml b/recipes/bioconductor-illuminahumanmethylationepicmanifest/meta.yaml index 21810fe87cbde..2566809f09591 100644 --- a/recipes/bioconductor-illuminahumanmethylationepicmanifest/meta.yaml +++ b/recipes/bioconductor-illuminahumanmethylationepicmanifest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c6b0268de177badfe0b8184002da7e16 build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanv1.db/meta.yaml b/recipes/bioconductor-illuminahumanv1.db/meta.yaml index ab6ef6065e12d..86d3d48d1c620 100644 --- a/recipes/bioconductor-illuminahumanv1.db/meta.yaml +++ b/recipes/bioconductor-illuminahumanv1.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2c362256b7be2861b8bf6e0d1fe46786 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanv2.db/meta.yaml b/recipes/bioconductor-illuminahumanv2.db/meta.yaml index 0c735a470b026..bba7256cd5e99 100644 --- a/recipes/bioconductor-illuminahumanv2.db/meta.yaml +++ b/recipes/bioconductor-illuminahumanv2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 006de5f671a9a68fb27a6b6bce39c555 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanv2beadid.db/meta.yaml b/recipes/bioconductor-illuminahumanv2beadid.db/meta.yaml index 3af5d5d874006..2ed657e7d451f 100644 --- a/recipes/bioconductor-illuminahumanv2beadid.db/meta.yaml +++ b/recipes/bioconductor-illuminahumanv2beadid.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b5a2b2deaa9a9b245a141043e7bc5270 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanv3.db/meta.yaml b/recipes/bioconductor-illuminahumanv3.db/meta.yaml index 59d763c72e984..2f70f21fcc321 100644 --- a/recipes/bioconductor-illuminahumanv3.db/meta.yaml +++ b/recipes/bioconductor-illuminahumanv3.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d9e7534f0b60f0e3e7473e545ef373d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanv4.db/meta.yaml b/recipes/bioconductor-illuminahumanv4.db/meta.yaml index 52893d2d4f085..49c94ef1bcaff 100644 --- a/recipes/bioconductor-illuminahumanv4.db/meta.yaml +++ b/recipes/bioconductor-illuminahumanv4.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 42d554559ac0106dc71317ffaf466421 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanwgdaslv3.db/meta.yaml b/recipes/bioconductor-illuminahumanwgdaslv3.db/meta.yaml index 3f2436ab070b0..4799914ac6666 100644 --- a/recipes/bioconductor-illuminahumanwgdaslv3.db/meta.yaml +++ b/recipes/bioconductor-illuminahumanwgdaslv3.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 32e8e24555c16f6d0148438d4a841ab8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminahumanwgdaslv4.db/meta.yaml b/recipes/bioconductor-illuminahumanwgdaslv4.db/meta.yaml index 2fef68db325e8..d7b6262f4a87d 100644 --- a/recipes/bioconductor-illuminahumanwgdaslv4.db/meta.yaml +++ b/recipes/bioconductor-illuminahumanwgdaslv4.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4cc1f192de838f2b6c1b148706d354ca build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminaio/meta.yaml b/recipes/bioconductor-illuminaio/meta.yaml index d93a3a76666a1..99ec6512e0795 100644 --- a/recipes/bioconductor-illuminaio/meta.yaml +++ b/recipes/bioconductor-illuminaio/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bfcf25ce8fe6d149909e61885527b966 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminamousev1.db/meta.yaml b/recipes/bioconductor-illuminamousev1.db/meta.yaml index ca3281ea81674..4f6c2e2d9f902 100644 --- a/recipes/bioconductor-illuminamousev1.db/meta.yaml +++ b/recipes/bioconductor-illuminamousev1.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 13818c3b9acabe75550492bbe638fc05 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminamousev1p1.db/meta.yaml b/recipes/bioconductor-illuminamousev1p1.db/meta.yaml index 823098b679ee2..a74a5ad273c9e 100644 --- a/recipes/bioconductor-illuminamousev1p1.db/meta.yaml +++ b/recipes/bioconductor-illuminamousev1p1.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f6a4af01480a6f8d1d2d9b9b64a2b073 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminamousev2.db/meta.yaml b/recipes/bioconductor-illuminamousev2.db/meta.yaml index ffedcd79a7cda..a8e9ffd79d72f 100644 --- a/recipes/bioconductor-illuminamousev2.db/meta.yaml +++ b/recipes/bioconductor-illuminamousev2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fba228a71f264f976d8cdb035861974d build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-illuminaratv1.db/meta.yaml b/recipes/bioconductor-illuminaratv1.db/meta.yaml index 23d99fa32180d..ca909b6d36f24 100644 --- a/recipes/bioconductor-illuminaratv1.db/meta.yaml +++ b/recipes/bioconductor-illuminaratv1.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5de2324d7b96c0cdb3301ef269341aa8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-imagehts/meta.yaml b/recipes/bioconductor-imagehts/meta.yaml index 4c141c5ca5702..9198d142dd3f4 100644 --- a/recipes/bioconductor-imagehts/meta.yaml +++ b/recipes/bioconductor-imagehts/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a2a6b427bd861f6f0e13b46f3c6bd6d3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-imas/meta.yaml b/recipes/bioconductor-imas/meta.yaml index 394b2a791df8e..c19c22d481a91 100644 --- a/recipes/bioconductor-imas/meta.yaml +++ b/recipes/bioconductor-imas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2bbe62f67811961074d499b7927f7465 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-imetagene/meta.yaml b/recipes/bioconductor-imetagene/meta.yaml index 4c98f735c9ead..9c8eb4792f919 100644 --- a/recipes/bioconductor-imetagene/meta.yaml +++ b/recipes/bioconductor-imetagene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 079bec706473caf6d5b36a0ecadbf963 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-imman/meta.yaml b/recipes/bioconductor-imman/meta.yaml index 61e688ef79ece..b815b9beac5f6 100644 --- a/recipes/bioconductor-imman/meta.yaml +++ b/recipes/bioconductor-imman/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0d83a0ca90c511709dc5f03f97a07d49 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-immunespacer/meta.yaml b/recipes/bioconductor-immunespacer/meta.yaml index b1ef593e17ecc..5efe0bb3b5192 100644 --- a/recipes/bioconductor-immunespacer/meta.yaml +++ b/recipes/bioconductor-immunespacer/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.0" %} +{% set version = "1.12.2" %} {% set name = "ImmuneSpaceR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: ac83d473e77b4b7d705faf9b1bae332f + md5: 2157e52581a662aeef30ba491ed7cb96 build: number: 0 rpaths: @@ -28,7 +28,7 @@ requirements: - r-curl - r-data.table - r-digest - - r-ggplot2 + - 'r-ggplot2 >=3.2.0' - r-gplots - 'r-heatmaply >=0.7.0' - r-httr @@ -48,7 +48,7 @@ requirements: - r-curl - r-data.table - r-digest - - r-ggplot2 + - 'r-ggplot2 >=3.2.0' - r-gplots - 'r-heatmaply >=0.7.0' - r-httr diff --git a/recipes/bioconductor-immunoclust/meta.yaml b/recipes/bioconductor-immunoclust/meta.yaml index a9d94e3689c9c..cdcfa7fd230e7 100644 --- a/recipes/bioconductor-immunoclust/meta.yaml +++ b/recipes/bioconductor-immunoclust/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 75cb645cc6c100e4899d21444fa92c85 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-impcdata/meta.yaml b/recipes/bioconductor-impcdata/meta.yaml index fca0af926366e..d3620064fdaa2 100644 --- a/recipes/bioconductor-impcdata/meta.yaml +++ b/recipes/bioconductor-impcdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 10a82494a1fc776a715f32bf010d6fcb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-impulsede/meta.yaml b/recipes/bioconductor-impulsede/meta.yaml index 00e7c0d4fc0eb..c0899db799bee 100644 --- a/recipes/bioconductor-impulsede/meta.yaml +++ b/recipes/bioconductor-impulsede/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d3fc8f7a9a204922e9b52a91bb2ae113 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-impulsede2/meta.yaml b/recipes/bioconductor-impulsede2/meta.yaml index 66320d128c99e..aa75c008ff677 100644 --- a/recipes/bioconductor-impulsede2/meta.yaml +++ b/recipes/bioconductor-impulsede2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d5c0703064c18d87df62b888b81d2569 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-impute/meta.yaml b/recipes/bioconductor-impute/meta.yaml index c38d2086a2a6c..a7a5a947daecb 100644 --- a/recipes/bioconductor-impute/meta.yaml +++ b/recipes/bioconductor-impute/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a2cd42f981e6f84c3d8dd43589cdf8ec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-indac.db/meta.yaml b/recipes/bioconductor-indac.db/meta.yaml index 9d2f09c9737f4..d29cc3663d619 100644 --- a/recipes/bioconductor-indac.db/meta.yaml +++ b/recipes/bioconductor-indac.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cba72edcf7278033151e0eac077d8ff8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-indeed/meta.yaml b/recipes/bioconductor-indeed/meta.yaml index 4e81490b4cd0c..d137d7363fea2 100644 --- a/recipes/bioconductor-indeed/meta.yaml +++ b/recipes/bioconductor-indeed/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2dfab78fbd3675f6b52145078dd60c03 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-infercnv/meta.yaml b/recipes/bioconductor-infercnv/meta.yaml index 67b21e3d77383..39ee9c5cad4ab 100644 --- a/recipes/bioconductor-infercnv/meta.yaml +++ b/recipes/bioconductor-infercnv/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.3" %} {% set name = "infercnv" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: c5b74cb8bed015e8d34749f59b1c4f4f + md5: 2c8e379f37ce19d57434d990692b7e0e build: number: 0 rpaths: @@ -47,7 +47,6 @@ requirements: - r-reshape - r-rjags - r-tidyr - - jags 4 run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-edger >=3.26.0,<3.27.0' @@ -75,7 +74,6 @@ requirements: - r-reshape - r-rjags - r-tidyr - - jags 4 test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-inpas/meta.yaml b/recipes/bioconductor-inpas/meta.yaml index 3b64952a54129..9d3d79ea0766c 100644 --- a/recipes/bioconductor-inpas/meta.yaml +++ b/recipes/bioconductor-inpas/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.16.0" %} +{% set version = "1.16.3" %} {% set name = "InPAS" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: ee79cfafe7ecf4a91e030071945f4fb8 + md5: f3a582128b32c2b70d5e093e6efe79a6 build: number: 0 rpaths: @@ -59,5 +59,5 @@ test: about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>= 2)' - summary: 'Alternative polyadenylation (APA) is one of the important post-transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites from RNAseq data. It leverages cleanUpdTSeq to fine tune identified APA sites.' + summary: 'Alternative polyadenylation (APA) is one of the important post-transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites due to internal-priming.' diff --git a/recipes/bioconductor-inpower/meta.yaml b/recipes/bioconductor-inpower/meta.yaml index 77bdb663d2216..a69e6fa75d3bf 100644 --- a/recipes/bioconductor-inpower/meta.yaml +++ b/recipes/bioconductor-inpower/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f2956f51c54c958ef26f6e5fb5514053 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-inspect/meta.yaml b/recipes/bioconductor-inspect/meta.yaml index cc483b1cfa09f..3a47c55be9349 100644 --- a/recipes/bioconductor-inspect/meta.yaml +++ b/recipes/bioconductor-inspect/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b7c4434d8f6346e3b3751eb8a7bd50f7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-intad/meta.yaml b/recipes/bioconductor-intad/meta.yaml index 941d9f0fdfc9b..2e4cc188b96de 100644 --- a/recipes/bioconductor-intad/meta.yaml +++ b/recipes/bioconductor-intad/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 629fffc8ce328eb60cfa3c52cc9b2907 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-intansv/meta.yaml b/recipes/bioconductor-intansv/meta.yaml index 6fdca452ad6c8..98a9c7d0fb29b 100644 --- a/recipes/bioconductor-intansv/meta.yaml +++ b/recipes/bioconductor-intansv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9e7fea98fb594a592249a9c8d7aadb8f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-interactionset/meta.yaml b/recipes/bioconductor-interactionset/meta.yaml index 437801d5fb651..1f3880269f4c9 100644 --- a/recipes/bioconductor-interactionset/meta.yaml +++ b/recipes/bioconductor-interactionset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 07e6970639ef0dbd8a73837560b37d61 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-interactivedisplay/meta.yaml b/recipes/bioconductor-interactivedisplay/meta.yaml index 5580d2cdeb99c..a5140bc3621d7 100644 --- a/recipes/bioconductor-interactivedisplay/meta.yaml +++ b/recipes/bioconductor-interactivedisplay/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9f41ae1b1f2663388f320e616e6f1c86 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-interactivedisplaybase/meta.yaml b/recipes/bioconductor-interactivedisplaybase/meta.yaml index b021c79289375..a6618198528a8 100644 --- a/recipes/bioconductor-interactivedisplaybase/meta.yaml +++ b/recipes/bioconductor-interactivedisplaybase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 69e4cf7831b72ac47f40df36c2db1ddb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-interest/meta.yaml b/recipes/bioconductor-interest/meta.yaml index df8560e573df4..4fa4a7c32ba7d 100644 --- a/recipes/bioconductor-interest/meta.yaml +++ b/recipes/bioconductor-interest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9b3f4c58a0efe17843478e5bc800486e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-interminer/meta.yaml b/recipes/bioconductor-interminer/meta.yaml index 0f2f89dffa0c9..212ad5571b2a1 100644 --- a/recipes/bioconductor-interminer/meta.yaml +++ b/recipes/bioconductor-interminer/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.6.0" %} +{% set version = "1.6.1" %} {% set name = "InterMineR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 9be486c5d330e6818f9373621381893d + md5: e705e0148a268717c461a2c188c1fd93 build: number: 0 rpaths: diff --git a/recipes/bioconductor-intramirexplorer/meta.yaml b/recipes/bioconductor-intramirexplorer/meta.yaml index a710a01f746a1..2a372b8a94056 100644 --- a/recipes/bioconductor-intramirexplorer/meta.yaml +++ b/recipes/bioconductor-intramirexplorer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2afcd5b9e14a10fef5cf8f4c9cfcbd3f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-inversion/meta.yaml b/recipes/bioconductor-inversion/meta.yaml index f0a527253ce4e..e3141473646cb 100644 --- a/recipes/bioconductor-inversion/meta.yaml +++ b/recipes/bioconductor-inversion/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8baae537f75d3a562e69b34a66def929 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ioniser/meta.yaml b/recipes/bioconductor-ioniser/meta.yaml index f2e1ed37cb715..378d299dd5438 100644 --- a/recipes/bioconductor-ioniser/meta.yaml +++ b/recipes/bioconductor-ioniser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 59bcb7f086b55f1551a88c2fb0542535 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ipac/meta.yaml b/recipes/bioconductor-ipac/meta.yaml index 1dd3dc6a0614e..cf47c59be6079 100644 --- a/recipes/bioconductor-ipac/meta.yaml +++ b/recipes/bioconductor-ipac/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1fdc1f29676fbb941f029d10b87044d2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ipddb/meta.yaml b/recipes/bioconductor-ipddb/meta.yaml index b286882dd00d4..141b9d51666ea 100644 --- a/recipes/bioconductor-ipddb/meta.yaml +++ b/recipes/bioconductor-ipddb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d9255c8440a60b0dff66aaf02291e498 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ipo/meta.yaml b/recipes/bioconductor-ipo/meta.yaml index 6c3ad74472a4b..c5c73a6d0e83d 100644 --- a/recipes/bioconductor-ipo/meta.yaml +++ b/recipes/bioconductor-ipo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dc27b55b709bae8e44e74d442792bcd8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ippd/meta.yaml b/recipes/bioconductor-ippd/meta.yaml index dc4384aa858fb..afb34bd921782 100644 --- a/recipes/bioconductor-ippd/meta.yaml +++ b/recipes/bioconductor-ippd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8945de40830ddf1cf423a7ebacd346e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iranges/meta.yaml b/recipes/bioconductor-iranges/meta.yaml index 4b4b1958decfc..e1449a5f1558c 100644 --- a/recipes/bioconductor-iranges/meta.yaml +++ b/recipes/bioconductor-iranges/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.18.0" %} +{% set version = "2.18.1" %} {% set name = "IRanges" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 3d00ac5aba67be591e3433abeb3c355d + md5: b549e2cc12cef49b47a4a8e1b71608b2 build: number: 0 rpaths: diff --git a/recipes/bioconductor-isee/meta.yaml b/recipes/bioconductor-isee/meta.yaml index 42be2b04d4a4e..3b815efc1617a 100644 --- a/recipes/bioconductor-isee/meta.yaml +++ b/recipes/bioconductor-isee/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 09c890984d49ca15e67da9c23b40bc28 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iseq/meta.yaml b/recipes/bioconductor-iseq/meta.yaml index 975442577447a..6b2e3984167fc 100644 --- a/recipes/bioconductor-iseq/meta.yaml +++ b/recipes/bioconductor-iseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 34fcf377d00fe05b4fb3fd030c73f960 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-isobar/meta.yaml b/recipes/bioconductor-isobar/meta.yaml index 61282d43c42d3..15dd2f6060bd0 100644 --- a/recipes/bioconductor-isobar/meta.yaml +++ b/recipes/bioconductor-isobar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b7ee8950caf1433708ff8ac6b95260d9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-isocorrector/meta.yaml b/recipes/bioconductor-isocorrector/meta.yaml index 1f422c53a7851..3e8b415526867 100644 --- a/recipes/bioconductor-isocorrector/meta.yaml +++ b/recipes/bioconductor-isocorrector/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.1" %} {% set name = "IsoCorrectoR" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: b4d5822280558aff3624199032462d2a + md5: a59a913c2c0af39cbdb3a126e15c7bf2 build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: knitr, rmarkdown, testthat +# Suggests: IsoCorrectoRGUI, knitr, rmarkdown, testthat requirements: host: - r-base @@ -47,7 +47,7 @@ test: about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-3 - summary: 'IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously). See the Bioconductor package IsoCorrectoRGUI for a graphical user interface to IsoCorrectoR. IsoCorrectoRGUI is currently only available in the devel version of Bioconductor.' + summary: 'IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously). See the Bioconductor package IsoCorrectoRGUI for a graphical user interface to IsoCorrectoR.' extra: parent_recipe: name: bioconductor-isocorrector diff --git a/recipes/bioconductor-isocorrectorgui/meta.yaml b/recipes/bioconductor-isocorrectorgui/meta.yaml index ea2f3b4ae9a86..074024835bb5e 100644 --- a/recipes/bioconductor-isocorrectorgui/meta.yaml +++ b/recipes/bioconductor-isocorrectorgui/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.2" %} {% set name = "IsoCorrectoRGUI" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 711d12a341ba39a55603fba3aa4c6161 + md5: 6b3b23893b98ae3f38e724ad10d6d91b build: number: 0 rpaths: diff --git a/recipes/bioconductor-isoformswitchanalyzer/meta.yaml b/recipes/bioconductor-isoformswitchanalyzer/meta.yaml index b0e768c2408a3..6e23a1ec1f0fc 100644 --- a/recipes/bioconductor-isoformswitchanalyzer/meta.yaml +++ b/recipes/bioconductor-isoformswitchanalyzer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7dd5e98185805f3db37b5721a227a9bb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-isogenegui/meta.yaml b/recipes/bioconductor-isogenegui/meta.yaml index 6cc0f5e9816bb..fe282f77b5c66 100644 --- a/recipes/bioconductor-isogenegui/meta.yaml +++ b/recipes/bioconductor-isogenegui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a14a8953f9c3cc6c45c5d22d0a9c0345 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-isolde/meta.yaml b/recipes/bioconductor-isolde/meta.yaml index cd2956fabb3c0..1c96accab4325 100644 --- a/recipes/bioconductor-isolde/meta.yaml +++ b/recipes/bioconductor-isolde/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 276c0974c5b41c30d6838ecb3a9c4432 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-isomirs/meta.yaml b/recipes/bioconductor-isomirs/meta.yaml index b737ca78f8d28..f10fb1f9faf6a 100644 --- a/recipes/bioconductor-isomirs/meta.yaml +++ b/recipes/bioconductor-isomirs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b4aed94aabd853358bfee3e7110766ab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-italics/meta.yaml b/recipes/bioconductor-italics/meta.yaml index 0ce24c5e94847..7774ce6ac09c1 100644 --- a/recipes/bioconductor-italics/meta.yaml +++ b/recipes/bioconductor-italics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e6f57ef7c5bbe5ed02dd9cb61250f250 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-italicsdata/meta.yaml b/recipes/bioconductor-italicsdata/meta.yaml index 930b8e4e4403a..fa478562074ad 100644 --- a/recipes/bioconductor-italicsdata/meta.yaml +++ b/recipes/bioconductor-italicsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 20e86e82a58cd3beddddf7ebd31f649b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-italicsdata/post-link.sh b/recipes/bioconductor-italicsdata/post-link.sh index 35ffdeb6fccf8..88afd52a8ba16 100644 --- a/recipes/bioconductor-italicsdata/post-link.sh +++ b/recipes/bioconductor-italicsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ITALICSData_2.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ITALICSData_2.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-italicsdata/bioconductor-italicsdata_2.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-italicsdata/bioconductor-italicsdata_2.22.0_src_all.tar.gz" ) MD5="20e86e82a58cd3beddddf7ebd31f649b" diff --git a/recipes/bioconductor-iterativebma/meta.yaml b/recipes/bioconductor-iterativebma/meta.yaml index 51a83d1996eb2..af162862ad0d8 100644 --- a/recipes/bioconductor-iterativebma/meta.yaml +++ b/recipes/bioconductor-iterativebma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c26210dc91288d115df41cc61354a7d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iterativebmasurv/meta.yaml b/recipes/bioconductor-iterativebmasurv/meta.yaml index 48b028538b799..285b7581e5665 100644 --- a/recipes/bioconductor-iterativebmasurv/meta.yaml +++ b/recipes/bioconductor-iterativebmasurv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aaa6fc21790a7635efadeed3a38844dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iterclust/meta.yaml b/recipes/bioconductor-iterclust/meta.yaml index a8c379eda74e4..ce716584b0eef 100644 --- a/recipes/bioconductor-iterclust/meta.yaml +++ b/recipes/bioconductor-iterclust/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 70ac9c78685bb43b679b7ff045973b48 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iteremoval/meta.yaml b/recipes/bioconductor-iteremoval/meta.yaml index 32653ef8f1ce7..54cc339d1f515 100644 --- a/recipes/bioconductor-iteremoval/meta.yaml +++ b/recipes/bioconductor-iteremoval/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c46186d3425702960b2a52b9abf95e7d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ivas/meta.yaml b/recipes/bioconductor-ivas/meta.yaml index 99a4e06b7cb33..a5aa7de62de1b 100644 --- a/recipes/bioconductor-ivas/meta.yaml +++ b/recipes/bioconductor-ivas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f47596c3dd0e30e36ffd95202598ffb5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ivygapse/meta.yaml b/recipes/bioconductor-ivygapse/meta.yaml index e2e8a13aa0e9c..655382302ed07 100644 --- a/recipes/bioconductor-ivygapse/meta.yaml +++ b/recipes/bioconductor-ivygapse/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d65a1bbbb18590ab5d4511c32db0b219 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iwtomics/meta.yaml b/recipes/bioconductor-iwtomics/meta.yaml index 53a7a0a8c61fe..4e93d2621dde7 100644 --- a/recipes/bioconductor-iwtomics/meta.yaml +++ b/recipes/bioconductor-iwtomics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 83f139dee1677f2058729a33253ff7af build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iyer517/meta.yaml b/recipes/bioconductor-iyer517/meta.yaml index 2af8c3b0a78d0..70adb4f73849b 100644 --- a/recipes/bioconductor-iyer517/meta.yaml +++ b/recipes/bioconductor-iyer517/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 22360bdd418629479e66c15026f99c7b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-iyer517/post-link.sh b/recipes/bioconductor-iyer517/post-link.sh index 7a95b835058ed..28c7bd9d628f6 100644 --- a/recipes/bioconductor-iyer517/post-link.sh +++ b/recipes/bioconductor-iyer517/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Iyer517_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/Iyer517_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-iyer517/bioconductor-iyer517_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-iyer517/bioconductor-iyer517_1.26.0_src_all.tar.gz" ) MD5="22360bdd418629479e66c15026f99c7b" diff --git a/recipes/bioconductor-jaspar2014/meta.yaml b/recipes/bioconductor-jaspar2014/meta.yaml index 26e2c2b4ec05f..631e47b75c5dd 100644 --- a/recipes/bioconductor-jaspar2014/meta.yaml +++ b/recipes/bioconductor-jaspar2014/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4e907b35b06421d73433cc13987ddb9a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-jaspar2014/post-link.sh b/recipes/bioconductor-jaspar2014/post-link.sh index c2734d02a5548..ff6dab44d831c 100644 --- a/recipes/bioconductor-jaspar2014/post-link.sh +++ b/recipes/bioconductor-jaspar2014/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/JASPAR2014_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/JASPAR2014_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-jaspar2014/bioconductor-jaspar2014_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-jaspar2014/bioconductor-jaspar2014_1.20.0_src_all.tar.gz" ) MD5="4e907b35b06421d73433cc13987ddb9a" diff --git a/recipes/bioconductor-jaspar2016/meta.yaml b/recipes/bioconductor-jaspar2016/meta.yaml index 94feda1156e7b..dac831f57d937 100644 --- a/recipes/bioconductor-jaspar2016/meta.yaml +++ b/recipes/bioconductor-jaspar2016/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 010a850897534622a73f91dedb64dc4e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-jaspar2016/post-link.sh b/recipes/bioconductor-jaspar2016/post-link.sh index fff3805a391e7..982a00d1813e4 100644 --- a/recipes/bioconductor-jaspar2016/post-link.sh +++ b/recipes/bioconductor-jaspar2016/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/JASPAR2016_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/JASPAR2016_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-jaspar2016/bioconductor-jaspar2016_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-jaspar2016/bioconductor-jaspar2016_1.12.0_src_all.tar.gz" ) MD5="010a850897534622a73f91dedb64dc4e" diff --git a/recipes/bioconductor-jaspar2018/meta.yaml b/recipes/bioconductor-jaspar2018/meta.yaml index 2293305ca3545..ff2f35ea3805c 100644 --- a/recipes/bioconductor-jaspar2018/meta.yaml +++ b/recipes/bioconductor-jaspar2018/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d91fce6ea0dc9fa6a3be6ebc05c1af5d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-jazaerimetadata.db/meta.yaml b/recipes/bioconductor-jazaerimetadata.db/meta.yaml index 14fb81944fc70..a5218128acdcf 100644 --- a/recipes/bioconductor-jazaerimetadata.db/meta.yaml +++ b/recipes/bioconductor-jazaerimetadata.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3a154a74ac2acebe3471b039c9d9a4dc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-jctseqdata/meta.yaml b/recipes/bioconductor-jctseqdata/meta.yaml index fd484086cc841..0943e4dbc6786 100644 --- a/recipes/bioconductor-jctseqdata/meta.yaml +++ b/recipes/bioconductor-jctseqdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 26cbe5468815dbc5bb9d0e86c90cb88d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-jctseqdata/post-link.sh b/recipes/bioconductor-jctseqdata/post-link.sh index db99eb992108a..a8e19b7325c45 100644 --- a/recipes/bioconductor-jctseqdata/post-link.sh +++ b/recipes/bioconductor-jctseqdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/JctSeqData_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/JctSeqData_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-jctseqdata/bioconductor-jctseqdata_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-jctseqdata/bioconductor-jctseqdata_1.14.0_src_all.tar.gz" ) MD5="26cbe5468815dbc5bb9d0e86c90cb88d" diff --git a/recipes/bioconductor-joda/meta.yaml b/recipes/bioconductor-joda/meta.yaml index 2eea7d148633d..7e5364e59efc5 100644 --- a/recipes/bioconductor-joda/meta.yaml +++ b/recipes/bioconductor-joda/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dd636d646cd32887e7482c3d33790873 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-junctionseq/meta.yaml b/recipes/bioconductor-junctionseq/meta.yaml index 264eeb48af632..c833bc262d13d 100644 --- a/recipes/bioconductor-junctionseq/meta.yaml +++ b/recipes/bioconductor-junctionseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c86ceab0a76520077f0faaadeb246c90 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-karyoploter/meta.yaml b/recipes/bioconductor-karyoploter/meta.yaml index f94c525e1cc9f..5d95b934eb758 100644 --- a/recipes/bioconductor-karyoploter/meta.yaml +++ b/recipes/bioconductor-karyoploter/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.10.0" %} +{% set version = "1.10.4" %} {% set name = "karyoploteR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: b773f86a0f6e6fc3f1350b1d4e86e134 + md5: e54ea3a3ac47de9d1182d4c44ee4667d build: number: 0 rpaths: diff --git a/recipes/bioconductor-kcsmart/meta.yaml b/recipes/bioconductor-kcsmart/meta.yaml index 53f40b49c681e..f3941d8882f83 100644 --- a/recipes/bioconductor-kcsmart/meta.yaml +++ b/recipes/bioconductor-kcsmart/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 35a417f9b9b31b4564cc1e471d4e5755 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kebabs/meta.yaml b/recipes/bioconductor-kebabs/meta.yaml index db1bc73ea98ab..0cedae80219fb 100644 --- a/recipes/bioconductor-kebabs/meta.yaml +++ b/recipes/bioconductor-kebabs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1ae029f6e3b610712443e5782250d37f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kegg.db/meta.yaml b/recipes/bioconductor-kegg.db/meta.yaml index e5077c88532a7..ad02cda4e597f 100644 --- a/recipes/bioconductor-kegg.db/meta.yaml +++ b/recipes/bioconductor-kegg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 023ac22f57063627c2e62d1ae5e011b0 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml b/recipes/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml index e3689fa23307a..adb8a55dbdae7 100644 --- a/recipes/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml +++ b/recipes/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d61c7d151e5cb9b955199a4b184a761 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-keggandmetacoredzpathwaysgeo/post-link.sh b/recipes/bioconductor-keggandmetacoredzpathwaysgeo/post-link.sh index 92b30a6dbe365..b2cd7a99b8469 100644 --- a/recipes/bioconductor-keggandmetacoredzpathwaysgeo/post-link.sh +++ b/recipes/bioconductor-keggandmetacoredzpathwaysgeo/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/KEGGandMetacoreDzPathwaysGEO_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/KEGGandMetacoreDzPathwaysGEO_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-keggandmetacoredzpathwaysgeo/bioconductor-keggandmetacoredzpathwaysgeo_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-keggandmetacoredzpathwaysgeo/bioconductor-keggandmetacoredzpathwaysgeo_1.4.0_src_all.tar.gz" ) MD5="7d61c7d151e5cb9b955199a4b184a761" diff --git a/recipes/bioconductor-keggdzpathwaysgeo/meta.yaml b/recipes/bioconductor-keggdzpathwaysgeo/meta.yaml index e11674803e212..1a119cd05e515 100644 --- a/recipes/bioconductor-keggdzpathwaysgeo/meta.yaml +++ b/recipes/bioconductor-keggdzpathwaysgeo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89a8755fa8639a60b631b1f72336e98f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-keggdzpathwaysgeo/post-link.sh b/recipes/bioconductor-keggdzpathwaysgeo/post-link.sh index 0d67fc87c4666..31468cb723f4a 100644 --- a/recipes/bioconductor-keggdzpathwaysgeo/post-link.sh +++ b/recipes/bioconductor-keggdzpathwaysgeo/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/KEGGdzPathwaysGEO_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/KEGGdzPathwaysGEO_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-keggdzpathwaysgeo/bioconductor-keggdzpathwaysgeo_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-keggdzpathwaysgeo/bioconductor-keggdzpathwaysgeo_1.22.0_src_all.tar.gz" ) MD5="89a8755fa8639a60b631b1f72336e98f" diff --git a/recipes/bioconductor-kegggraph/meta.yaml b/recipes/bioconductor-kegggraph/meta.yaml index b79fe590f4ba4..c55d0a49aa8fc 100644 --- a/recipes/bioconductor-kegggraph/meta.yaml +++ b/recipes/bioconductor-kegggraph/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e298c4cd0727be85b994ce6d55b231b1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kegglincs/meta.yaml b/recipes/bioconductor-kegglincs/meta.yaml index 3e3ffa0d64881..b2733ce1f43ca 100644 --- a/recipes/bioconductor-kegglincs/meta.yaml +++ b/recipes/bioconductor-kegglincs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 36bea9619be4db9dcb06b96fd1e3412e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -34,8 +34,6 @@ requirements: - r-plyr - r-rjsonio - r-xml - - cytoscape >=3.3.0 - - openjdk 8.* run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-hgu133a.db >=3.2.0,<3.3.0' @@ -50,8 +48,6 @@ requirements: - r-plyr - r-rjsonio - r-xml - - cytoscape >=3.3.0 - - openjdk 8.* test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-keggorthology/meta.yaml b/recipes/bioconductor-keggorthology/meta.yaml index be5bf136a557b..2b4f66d7d110c 100644 --- a/recipes/bioconductor-keggorthology/meta.yaml +++ b/recipes/bioconductor-keggorthology/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a469c9ebfc6aa734e7ff0a370a76ea76 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-keggprofile/meta.yaml b/recipes/bioconductor-keggprofile/meta.yaml index eb61d89179609..f1f7da1536489 100644 --- a/recipes/bioconductor-keggprofile/meta.yaml +++ b/recipes/bioconductor-keggprofile/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 91deb781c85b4721d458507ead2a49d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-keggrest/meta.yaml b/recipes/bioconductor-keggrest/meta.yaml index 68dc8b6d95ae9..70de8b648be61 100644 --- a/recipes/bioconductor-keggrest/meta.yaml +++ b/recipes/bioconductor-keggrest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 92afe9765a580a1c947fb6d5467c9eb7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kidpack/meta.yaml b/recipes/bioconductor-kidpack/meta.yaml index 53d5a0ec9168f..25e5e566b91c9 100644 --- a/recipes/bioconductor-kidpack/meta.yaml +++ b/recipes/bioconductor-kidpack/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 380a3108979f90114e23c9756fb10bd0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kidpack/post-link.sh b/recipes/bioconductor-kidpack/post-link.sh index 6ea5af25a64af..e8ba6230d2702 100644 --- a/recipes/bioconductor-kidpack/post-link.sh +++ b/recipes/bioconductor-kidpack/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/kidpack_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/kidpack_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-kidpack/bioconductor-kidpack_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-kidpack/bioconductor-kidpack_1.26.0_src_all.tar.gz" ) MD5="380a3108979f90114e23c9756fb10bd0" diff --git a/recipes/bioconductor-kimod/meta.yaml b/recipes/bioconductor-kimod/meta.yaml index 3b9f33bb12a91..96c1bc4bd03e8 100644 --- a/recipes/bioconductor-kimod/meta.yaml +++ b/recipes/bioconductor-kimod/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f5352633a9d77335245869357ea08738 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kinswingr/meta.yaml b/recipes/bioconductor-kinswingr/meta.yaml index 8d95fca484042..153b655e2aaa3 100644 --- a/recipes/bioconductor-kinswingr/meta.yaml +++ b/recipes/bioconductor-kinswingr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b0df202538b540f80dfc3ce1df2d5efa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kissde/meta.yaml b/recipes/bioconductor-kissde/meta.yaml index 42751197c284a..51e54f78d1441 100644 --- a/recipes/bioconductor-kissde/meta.yaml +++ b/recipes/bioconductor-kissde/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 46b4f2ecba916fb54ee06357be23a29c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kodata/meta.yaml b/recipes/bioconductor-kodata/meta.yaml index a53e2d8655a89..1e0413e0ccb64 100644 --- a/recipes/bioconductor-kodata/meta.yaml +++ b/recipes/bioconductor-kodata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4decbccf4763a957a56256bf026fd955 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-kodata/post-link.sh b/recipes/bioconductor-kodata/post-link.sh index 3c2cceb3fe1cf..8d09f70b5f102 100644 --- a/recipes/bioconductor-kodata/post-link.sh +++ b/recipes/bioconductor-kodata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/KOdata_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/KOdata_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-kodata/bioconductor-kodata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-kodata/bioconductor-kodata_1.10.0_src_all.tar.gz" ) MD5="4decbccf4763a957a56256bf026fd955" diff --git a/recipes/bioconductor-lapmix/meta.yaml b/recipes/bioconductor-lapmix/meta.yaml index 9e31235847e82..279f33370b6d7 100644 --- a/recipes/bioconductor-lapmix/meta.yaml +++ b/recipes/bioconductor-lapmix/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c651cdd30ef812c669b2b06561292126 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lapointe.db/meta.yaml b/recipes/bioconductor-lapointe.db/meta.yaml index a141813dd36b5..47a022c7ff30a 100644 --- a/recipes/bioconductor-lapointe.db/meta.yaml +++ b/recipes/bioconductor-lapointe.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 434b25ad7411201d8be6bb1a0463b387 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lbe/meta.yaml b/recipes/bioconductor-lbe/meta.yaml index 53afacd4de19a..4593e746e32e4 100644 --- a/recipes/bioconductor-lbe/meta.yaml +++ b/recipes/bioconductor-lbe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b202a9fa83581c2ced9eda1b4878cedb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ldblock/meta.yaml b/recipes/bioconductor-ldblock/meta.yaml index 0393ea5d26872..4dd7caf734db4 100644 --- a/recipes/bioconductor-ldblock/meta.yaml +++ b/recipes/bioconductor-ldblock/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d67febd9e2a3b7117ab236bb253826ba build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -25,7 +25,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicfiles >=1.20.0,<1.21.0' - 'bioconductor-go.db >=3.8.0,<3.9.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-snpstats >=1.34.0,<1.35.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' @@ -37,7 +37,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicfiles >=1.20.0,<1.21.0' - 'bioconductor-go.db >=3.8.0,<3.9.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-snpstats >=1.34.0,<1.35.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' diff --git a/recipes/bioconductor-lea/meta.yaml b/recipes/bioconductor-lea/meta.yaml index 38a24adc4a1a1..55ea1b576a770 100644 --- a/recipes/bioconductor-lea/meta.yaml +++ b/recipes/bioconductor-lea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a20d7c2992d2218b872b637768cd24a1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ledpred/meta.yaml b/recipes/bioconductor-ledpred/meta.yaml index 4164e8e08dae6..8cab526e146a4 100644 --- a/recipes/bioconductor-ledpred/meta.yaml +++ b/recipes/bioconductor-ledpred/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a8c110446d86b622593f1326c4757d3c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-leebamviews/meta.yaml b/recipes/bioconductor-leebamviews/meta.yaml index 0aa44b53f0cdf..421936b080f66 100644 --- a/recipes/bioconductor-leebamviews/meta.yaml +++ b/recipes/bioconductor-leebamviews/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6e912f317ff209d059e12093b2816993 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-leebamviews/post-link.sh b/recipes/bioconductor-leebamviews/post-link.sh index 92041f9528f15..aecb46f417382 100644 --- a/recipes/bioconductor-leebamviews/post-link.sh +++ b/recipes/bioconductor-leebamviews/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/leeBamViews_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/leeBamViews_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-leebamviews/bioconductor-leebamviews_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-leebamviews/bioconductor-leebamviews_1.20.0_src_all.tar.gz" ) MD5="6e912f317ff209d059e12093b2816993" diff --git a/recipes/bioconductor-les/meta.yaml b/recipes/bioconductor-les/meta.yaml index f3aa61a03f4bd..e9818e3274bcc 100644 --- a/recipes/bioconductor-les/meta.yaml +++ b/recipes/bioconductor-les/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 674dc44527723d71cfeccb035f328b1b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-leukemiaseset/meta.yaml b/recipes/bioconductor-leukemiaseset/meta.yaml index 479697fee9de4..8e004940e2a72 100644 --- a/recipes/bioconductor-leukemiaseset/meta.yaml +++ b/recipes/bioconductor-leukemiaseset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d8ae541fe7fb33d22bff4cbf35d73a2c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-leukemiaseset/post-link.sh b/recipes/bioconductor-leukemiaseset/post-link.sh index 1d0a9b9006469..9ba18a8156ff0 100644 --- a/recipes/bioconductor-leukemiaseset/post-link.sh +++ b/recipes/bioconductor-leukemiaseset/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/leukemiasEset_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/leukemiasEset_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-leukemiaseset/bioconductor-leukemiaseset_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-leukemiaseset/bioconductor-leukemiaseset_1.20.0_src_all.tar.gz" ) MD5="d8ae541fe7fb33d22bff4cbf35d73a2c" diff --git a/recipes/bioconductor-levi/meta.yaml b/recipes/bioconductor-levi/meta.yaml index de74a84021153..ca101276cebe4 100644 --- a/recipes/bioconductor-levi/meta.yaml +++ b/recipes/bioconductor-levi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0540fd445269f0f76b769c52390cad03 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lfa/meta.yaml b/recipes/bioconductor-lfa/meta.yaml index b72454ee47323..6d3ac4a732150 100644 --- a/recipes/bioconductor-lfa/meta.yaml +++ b/recipes/bioconductor-lfa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8ffc04644ae46e129d8f9c28094b67c1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-liebermanaidenhic2009/meta.yaml b/recipes/bioconductor-liebermanaidenhic2009/meta.yaml index b9ec022f2e750..4b64d9bea6bc2 100644 --- a/recipes/bioconductor-liebermanaidenhic2009/meta.yaml +++ b/recipes/bioconductor-liebermanaidenhic2009/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f5bbf8ccf81d37918ff8ab7d55d8c5cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-liebermanaidenhic2009/post-link.sh b/recipes/bioconductor-liebermanaidenhic2009/post-link.sh index bb6dab7171528..bca495e85c88d 100644 --- a/recipes/bioconductor-liebermanaidenhic2009/post-link.sh +++ b/recipes/bioconductor-liebermanaidenhic2009/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/LiebermanAidenHiC2009_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/LiebermanAidenHiC2009_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-liebermanaidenhic2009/bioconductor-liebermanaidenhic2009_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-liebermanaidenhic2009/bioconductor-liebermanaidenhic2009_0.22.0_src_all.tar.gz" ) MD5="f5bbf8ccf81d37918ff8ab7d55d8c5cc" diff --git a/recipes/bioconductor-limma/meta.yaml b/recipes/bioconductor-limma/meta.yaml index c5959ce797c60..3d13bdaeb91b8 100644 --- a/recipes/bioconductor-limma/meta.yaml +++ b/recipes/bioconductor-limma/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "3.40.0" %} +{% set version = "3.40.2" %} {% set name = "limma" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: e0f515b4bf85f94de2a8922da7b213a3 + md5: d5118571a486be9d8033dd67102d2fdf build: number: 0 rpaths: diff --git a/recipes/bioconductor-limmagui/meta.yaml b/recipes/bioconductor-limmagui/meta.yaml index d8f831be913ec..9fd8dc802308a 100644 --- a/recipes/bioconductor-limmagui/meta.yaml +++ b/recipes/bioconductor-limmagui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: da7cbfa9ead2ea122e7c1a4e4f048933 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-linc/meta.yaml b/recipes/bioconductor-linc/meta.yaml index fb49b3366313e..4e4560a055508 100644 --- a/recipes/bioconductor-linc/meta.yaml +++ b/recipes/bioconductor-linc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5b3d4f07c51e87efa8b1894f69cfd085 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lineagepulse/meta.yaml b/recipes/bioconductor-lineagepulse/meta.yaml index dbb71b4f41613..298cc9b3aa65a 100644 --- a/recipes/bioconductor-lineagepulse/meta.yaml +++ b/recipes/bioconductor-lineagepulse/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4284019bc000d29688f6141de4a5c344 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-linnorm/meta.yaml b/recipes/bioconductor-linnorm/meta.yaml index b89356693c9b7..938a965b00447 100644 --- a/recipes/bioconductor-linnorm/meta.yaml +++ b/recipes/bioconductor-linnorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f7a2a4de6993c6351ae07f7d70370deb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lipidr/meta.yaml b/recipes/bioconductor-lipidr/meta.yaml index 40e9cf19d7dca..fc805679366c3 100644 --- a/recipes/bioconductor-lipidr/meta.yaml +++ b/recipes/bioconductor-lipidr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a827e4309c6d3751f78e194bd2b4668d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-liquidassociation/meta.yaml b/recipes/bioconductor-liquidassociation/meta.yaml index ae56b07d14f85..509d7def1532a 100644 --- a/recipes/bioconductor-liquidassociation/meta.yaml +++ b/recipes/bioconductor-liquidassociation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ff9e0913456b720c8366e01ec419d48 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-listeretalbsseq/meta.yaml b/recipes/bioconductor-listeretalbsseq/meta.yaml index 8c8ad02bc82e7..f67bc42462ed2 100644 --- a/recipes/bioconductor-listeretalbsseq/meta.yaml +++ b/recipes/bioconductor-listeretalbsseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 65a04e46b826417c971c461fa1599ba2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-listeretalbsseq/post-link.sh b/recipes/bioconductor-listeretalbsseq/post-link.sh index f0e265d908e45..0d198171cf04a 100644 --- a/recipes/bioconductor-listeretalbsseq/post-link.sh +++ b/recipes/bioconductor-listeretalbsseq/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ListerEtAlBSseq_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/ListerEtAlBSseq_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-listeretalbsseq/bioconductor-listeretalbsseq_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-listeretalbsseq/bioconductor-listeretalbsseq_1.16.0_src_all.tar.gz" ) MD5="65a04e46b826417c971c461fa1599ba2" diff --git a/recipes/bioconductor-lmdme/meta.yaml b/recipes/bioconductor-lmdme/meta.yaml index c06eed41717de..510393696bf37 100644 --- a/recipes/bioconductor-lmdme/meta.yaml +++ b/recipes/bioconductor-lmdme/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 546f6d67cd946e4d9d81632e2214ee41 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lmgene/meta.yaml b/recipes/bioconductor-lmgene/meta.yaml index 46ad37ab86341..3c9274b8a5ea3 100644 --- a/recipes/bioconductor-lmgene/meta.yaml +++ b/recipes/bioconductor-lmgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0073afa14740274f430c190c90ae3f2b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lobstahs/meta.yaml b/recipes/bioconductor-lobstahs/meta.yaml index 8d3c1ed5df471..decdc207d21bd 100644 --- a/recipes/bioconductor-lobstahs/meta.yaml +++ b/recipes/bioconductor-lobstahs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4153540588b21a7939bcd124d4b01ed7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-loci2path/meta.yaml b/recipes/bioconductor-loci2path/meta.yaml index 55a2ff99fb8d5..d23c8a0e34000 100644 --- a/recipes/bioconductor-loci2path/meta.yaml +++ b/recipes/bioconductor-loci2path/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a887d9af75e7ab94335dd7335f3048f2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-logicfs/meta.yaml b/recipes/bioconductor-logicfs/meta.yaml index 6a8b56150731d..7ec6bc22dde84 100644 --- a/recipes/bioconductor-logicfs/meta.yaml +++ b/recipes/bioconductor-logicfs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a63b247f856912abb2fe160c3d3b7039 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-logitt/meta.yaml b/recipes/bioconductor-logitt/meta.yaml index e340da12c2681..e614e7eb152f9 100644 --- a/recipes/bioconductor-logitt/meta.yaml +++ b/recipes/bioconductor-logitt/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 26d824e6c1b564e3e6ad3d86f8765124 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-logolas/meta.yaml b/recipes/bioconductor-logolas/meta.yaml index 413ddb1b105b6..8cea91e8e4e1a 100644 --- a/recipes/bioconductor-logolas/meta.yaml +++ b/recipes/bioconductor-logolas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 72af8e4603d85cfe4c8c2e63bcdface6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lol/meta.yaml b/recipes/bioconductor-lol/meta.yaml index 2d201cdc36976..25e13dd76cde5 100644 --- a/recipes/bioconductor-lol/meta.yaml +++ b/recipes/bioconductor-lol/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5454962e90b5ded1b75a52788f8ddb31 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lola/meta.yaml b/recipes/bioconductor-lola/meta.yaml index 4ea545de220f2..176a7b1a72272 100644 --- a/recipes/bioconductor-lola/meta.yaml +++ b/recipes/bioconductor-lola/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c058753a3f86f5cecef272313d90f6b1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-loomexperiment/meta.yaml b/recipes/bioconductor-loomexperiment/meta.yaml index 2a8fd6cf7e096..30670d03cfb51 100644 --- a/recipes/bioconductor-loomexperiment/meta.yaml +++ b/recipes/bioconductor-loomexperiment/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a06d4541c1ab40fc8dd322308a3ea0d7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lowmaca/meta.yaml b/recipes/bioconductor-lowmaca/meta.yaml index ce10df0111e6f..6ac2aa4610416 100644 --- a/recipes/bioconductor-lowmaca/meta.yaml +++ b/recipes/bioconductor-lowmaca/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.14.0" %} +{% set version = "1.14.1" %} {% set name = "LowMACA" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 91e15e0134043b52a8e1780e67ccfe15 + md5: d1f3df0c3f461321cdc4474afd23df3b build: number: 0 rpaths: @@ -23,7 +23,7 @@ requirements: host: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' - 'bioconductor-biostrings >=2.52.0,<2.53.0' - - 'bioconductor-lowmacaannotation >=1.0.0,<1.1.0' + - 'bioconductor-lowmacaannotation >=0.99.0,<0.100.0' - 'bioconductor-motifstack >=1.28.0,<1.29.0' - r-base - r-cgdsr @@ -33,13 +33,10 @@ requirements: - r-rcolorbrewer - r-reshape2 - r-stringr - - clustalo - - ghostscript - - perl run: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' - 'bioconductor-biostrings >=2.52.0,<2.53.0' - - 'bioconductor-lowmacaannotation >=1.0.0,<1.1.0' + - 'bioconductor-lowmacaannotation >=0.99.0,<0.100.0' - 'bioconductor-motifstack >=1.28.0,<1.29.0' - r-base - r-cgdsr @@ -49,9 +46,6 @@ requirements: - r-rcolorbrewer - r-reshape2 - r-stringr - - clustalo - - ghostscript - - perl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lowmacaannotation/meta.yaml b/recipes/bioconductor-lowmacaannotation/meta.yaml index 5d34daaea2402..13954f7f26eed 100644 --- a/recipes/bioconductor-lowmacaannotation/meta.yaml +++ b/recipes/bioconductor-lowmacaannotation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9e0d3fe7f30fe48aef9c4387eb5bacfa build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lpe/meta.yaml b/recipes/bioconductor-lpe/meta.yaml index 9d9e819caa7fe..bf7cef941331e 100644 --- a/recipes/bioconductor-lpe/meta.yaml +++ b/recipes/bioconductor-lpe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1771e59d10976d6bc23c35a5b919c8fb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lpeadj/meta.yaml b/recipes/bioconductor-lpeadj/meta.yaml index 46561d52235c6..b4f1758dd6507 100644 --- a/recipes/bioconductor-lpeadj/meta.yaml +++ b/recipes/bioconductor-lpeadj/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 399c100e5653af8e3a44a40690d85961 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lpnet/meta.yaml b/recipes/bioconductor-lpnet/meta.yaml index 1b23cf21d5697..cb9bae8eeb6a0 100644 --- a/recipes/bioconductor-lpnet/meta.yaml +++ b/recipes/bioconductor-lpnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3c07b7d48480cc94e895140d38ac0767 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lpsymphony/meta.yaml b/recipes/bioconductor-lpsymphony/meta.yaml index 19563d9602b0b..fbeee2992b5c8 100644 --- a/recipes/bioconductor-lpsymphony/meta.yaml +++ b/recipes/bioconductor-lpsymphony/meta.yaml @@ -12,8 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: acce764137f7f9a82443decd693b5efb build: - number: 0 - skip: True # [osx] + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lrbase.ath.eg.db/meta.yaml b/recipes/bioconductor-lrbase.ath.eg.db/meta.yaml index ca67a7d1095b4..ce301997e0b8b 100644 --- a/recipes/bioconductor-lrbase.ath.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.ath.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Ath.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 6e0a90bea4464b7240e9232181f52dfe + md5: 838d02f51114efc4429ff764a75eb77b build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.ath.eg.db/post-link.sh b/recipes/bioconductor-lrbase.ath.eg.db/post-link.sh index 5eb0651a81207..e68d0c45efbda 100644 --- a/recipes/bioconductor-lrbase.ath.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.ath.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Ath.eg.db_0.99.1.tar.gz" +FN="LRBase.Ath.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Ath.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Ath.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.ath.eg.db/bioconductor-lrbase.ath.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Ath.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Ath.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.ath.eg.db/bioconductor-lrbase.ath.eg.db_1.1.0_src_all.tar.gz" ) -MD5="6e0a90bea4464b7240e9232181f52dfe" +MD5="838d02f51114efc4429ff764a75eb77b" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.bta.eg.db/meta.yaml b/recipes/bioconductor-lrbase.bta.eg.db/meta.yaml index 2b11c4b6f3844..1edc278f0015c 100644 --- a/recipes/bioconductor-lrbase.bta.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.bta.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Bta.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 86857900bc1930ba591657acf645da0c + md5: deb05b4f9528ef6790dc8be05b30adb0 build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.bta.eg.db/post-link.sh b/recipes/bioconductor-lrbase.bta.eg.db/post-link.sh index aceeebac86b9b..e3646d29fe687 100644 --- a/recipes/bioconductor-lrbase.bta.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.bta.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Bta.eg.db_0.99.1.tar.gz" +FN="LRBase.Bta.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Bta.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Bta.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.bta.eg.db/bioconductor-lrbase.bta.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Bta.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Bta.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.bta.eg.db/bioconductor-lrbase.bta.eg.db_1.1.0_src_all.tar.gz" ) -MD5="86857900bc1930ba591657acf645da0c" +MD5="deb05b4f9528ef6790dc8be05b30adb0" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.cel.eg.db/meta.yaml b/recipes/bioconductor-lrbase.cel.eg.db/meta.yaml index cae1f981fd8e9..4c0817a45ac88 100644 --- a/recipes/bioconductor-lrbase.cel.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.cel.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Cel.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 5dab8f6ffaaa906809ac88f08a19c1a8 + md5: 76561e9cfce1587099a9c73e693cfebe build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.cel.eg.db/post-link.sh b/recipes/bioconductor-lrbase.cel.eg.db/post-link.sh index 347f71f388924..e6e5dc6a44f76 100644 --- a/recipes/bioconductor-lrbase.cel.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.cel.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Cel.eg.db_0.99.1.tar.gz" +FN="LRBase.Cel.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Cel.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Cel.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.cel.eg.db/bioconductor-lrbase.cel.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Cel.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Cel.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.cel.eg.db/bioconductor-lrbase.cel.eg.db_1.1.0_src_all.tar.gz" ) -MD5="5dab8f6ffaaa906809ac88f08a19c1a8" +MD5="76561e9cfce1587099a9c73e693cfebe" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.dme.eg.db/meta.yaml b/recipes/bioconductor-lrbase.dme.eg.db/meta.yaml index a8992bae84fad..194e0365bb1dc 100644 --- a/recipes/bioconductor-lrbase.dme.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.dme.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Dme.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 7b6f9855980744f690dab1eb844b064c + md5: c46f598e6e70aae7cf3f080a1f021769 build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.dme.eg.db/post-link.sh b/recipes/bioconductor-lrbase.dme.eg.db/post-link.sh index 0ec4733f44b3f..2eba5a1f11cb0 100644 --- a/recipes/bioconductor-lrbase.dme.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.dme.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Dme.eg.db_0.99.1.tar.gz" +FN="LRBase.Dme.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Dme.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Dme.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.dme.eg.db/bioconductor-lrbase.dme.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Dme.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Dme.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.dme.eg.db/bioconductor-lrbase.dme.eg.db_1.1.0_src_all.tar.gz" ) -MD5="7b6f9855980744f690dab1eb844b064c" +MD5="c46f598e6e70aae7cf3f080a1f021769" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.dre.eg.db/meta.yaml b/recipes/bioconductor-lrbase.dre.eg.db/meta.yaml index 9404277bd0145..c830a6e60e6bc 100644 --- a/recipes/bioconductor-lrbase.dre.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.dre.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Dre.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: c42713ece3330b6905a5d7bca909e560 + md5: d58cbdec717b7a7b1d7f5ae2a915bbe2 build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.dre.eg.db/post-link.sh b/recipes/bioconductor-lrbase.dre.eg.db/post-link.sh index 671abaea9fa3d..c3fede865a495 100644 --- a/recipes/bioconductor-lrbase.dre.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.dre.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Dre.eg.db_0.99.1.tar.gz" +FN="LRBase.Dre.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Dre.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Dre.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.dre.eg.db/bioconductor-lrbase.dre.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Dre.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Dre.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.dre.eg.db/bioconductor-lrbase.dre.eg.db_1.1.0_src_all.tar.gz" ) -MD5="c42713ece3330b6905a5d7bca909e560" +MD5="d58cbdec717b7a7b1d7f5ae2a915bbe2" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.gga.eg.db/meta.yaml b/recipes/bioconductor-lrbase.gga.eg.db/meta.yaml index 539c2db8230b1..d34e8cddbab0e 100644 --- a/recipes/bioconductor-lrbase.gga.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.gga.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Gga.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 373e0e029475e91e3eacf59e600b375f + md5: ded5108020a9ea7a8354a6b1f64e5887 build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.gga.eg.db/post-link.sh b/recipes/bioconductor-lrbase.gga.eg.db/post-link.sh index 96480ed6e5cf3..8d35614d68fa5 100644 --- a/recipes/bioconductor-lrbase.gga.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.gga.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Gga.eg.db_0.99.1.tar.gz" +FN="LRBase.Gga.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Gga.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Gga.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.gga.eg.db/bioconductor-lrbase.gga.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Gga.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Gga.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.gga.eg.db/bioconductor-lrbase.gga.eg.db_1.1.0_src_all.tar.gz" ) -MD5="373e0e029475e91e3eacf59e600b375f" +MD5="ded5108020a9ea7a8354a6b1f64e5887" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.hsa.eg.db/meta.yaml b/recipes/bioconductor-lrbase.hsa.eg.db/meta.yaml index 50d84899b22f0..f0a63587c5f8c 100644 --- a/recipes/bioconductor-lrbase.hsa.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.hsa.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Hsa.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: e9efba6f9b13b7a82e1c33ce1f09ea70 + md5: 232e2fbbd43d08699580d6b742495536 build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.hsa.eg.db/post-link.sh b/recipes/bioconductor-lrbase.hsa.eg.db/post-link.sh index c10c513ff0574..df6435696015b 100644 --- a/recipes/bioconductor-lrbase.hsa.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.hsa.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Hsa.eg.db_0.99.1.tar.gz" +FN="LRBase.Hsa.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Hsa.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Hsa.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.hsa.eg.db/bioconductor-lrbase.hsa.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Hsa.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Hsa.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.hsa.eg.db/bioconductor-lrbase.hsa.eg.db_1.1.0_src_all.tar.gz" ) -MD5="e9efba6f9b13b7a82e1c33ce1f09ea70" +MD5="232e2fbbd43d08699580d6b742495536" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.mmu.eg.db/meta.yaml b/recipes/bioconductor-lrbase.mmu.eg.db/meta.yaml index 5177cb384ae50..00f00989d470f 100644 --- a/recipes/bioconductor-lrbase.mmu.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.mmu.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Mmu.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 53e34f533656c1fd9a883d8ba3524351 + md5: 0e44f23822dd13140e09307bdbb0cdb2 build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.mmu.eg.db/post-link.sh b/recipes/bioconductor-lrbase.mmu.eg.db/post-link.sh index 12e195e5f095a..6178801444fd4 100644 --- a/recipes/bioconductor-lrbase.mmu.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.mmu.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Mmu.eg.db_0.99.1.tar.gz" +FN="LRBase.Mmu.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Mmu.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Mmu.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.mmu.eg.db/bioconductor-lrbase.mmu.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Mmu.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Mmu.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.mmu.eg.db/bioconductor-lrbase.mmu.eg.db_1.1.0_src_all.tar.gz" ) -MD5="53e34f533656c1fd9a883d8ba3524351" +MD5="0e44f23822dd13140e09307bdbb0cdb2" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.pab.eg.db/meta.yaml b/recipes/bioconductor-lrbase.pab.eg.db/meta.yaml index 726aa61bd1e65..783befda20315 100644 --- a/recipes/bioconductor-lrbase.pab.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.pab.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Pab.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 7492982789b07131beb6f0f9d9ad6743 + md5: 0f10e9ac866f845857a1a871aaeca94f build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.pab.eg.db/post-link.sh b/recipes/bioconductor-lrbase.pab.eg.db/post-link.sh index 66c7eb83fc0cb..5e628ad0883b5 100644 --- a/recipes/bioconductor-lrbase.pab.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.pab.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Pab.eg.db_0.99.1.tar.gz" +FN="LRBase.Pab.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Pab.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Pab.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.pab.eg.db/bioconductor-lrbase.pab.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Pab.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Pab.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.pab.eg.db/bioconductor-lrbase.pab.eg.db_1.1.0_src_all.tar.gz" ) -MD5="7492982789b07131beb6f0f9d9ad6743" +MD5="0f10e9ac866f845857a1a871aaeca94f" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.rno.eg.db/meta.yaml b/recipes/bioconductor-lrbase.rno.eg.db/meta.yaml index cea5903cd5b14..3f03b9bc79ee3 100644 --- a/recipes/bioconductor-lrbase.rno.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.rno.eg.db/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Rno.eg.db" %} {% set bioc = "3.9" %} @@ -7,11 +7,12 @@ package: version: '{{ version }}' source: url: + - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 7b2e0f64dfbbfa91d07bdd7a580ac9a7 + md5: e2ce696113c8b988053044f5df5b38aa build: - number: 1 + number: 0 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lrbase.rno.eg.db/post-link.sh b/recipes/bioconductor-lrbase.rno.eg.db/post-link.sh index 3ea4b3cca3588..d840697f5ee75 100644 --- a/recipes/bioconductor-lrbase.rno.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.rno.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="bioconductor-lrbase.rno.eg.db_1.0.0_src_all.tar.gz" +FN="LRBase.Rno.eg.db_1.1.0.tar.gz" URLS=( - "https://bioarchive.galaxyproject.org/LRBase.Rno.eg.db_1.0.0.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.rno.eg.db/bioconductor-lrbase.rno.eg.db_1.0.0_src_all.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.rno.eg.db/bioconductor-lrbase.rno.eg.db_1.0.0_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Rno.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Rno.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.rno.eg.db/bioconductor-lrbase.rno.eg.db_1.1.0_src_all.tar.gz" ) -MD5="7b2e0f64dfbbfa91d07bdd7a580ac9a7" +MD5="e2ce696113c8b988053044f5df5b38aa" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable diff --git a/recipes/bioconductor-lrbase.ssc.eg.db/meta.yaml b/recipes/bioconductor-lrbase.ssc.eg.db/meta.yaml index 8b8a9c3e5f6fd..61a6b57167965 100644 --- a/recipes/bioconductor-lrbase.ssc.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.ssc.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Ssc.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 9d3d86ae876cccc7dd930ae11dfa9c65 + md5: 69c6671a220035023b7a3bb8c4d43258 build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.ssc.eg.db/post-link.sh b/recipes/bioconductor-lrbase.ssc.eg.db/post-link.sh index 62442c56caf92..dc530f080b3a2 100644 --- a/recipes/bioconductor-lrbase.ssc.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.ssc.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Ssc.eg.db_0.99.1.tar.gz" +FN="LRBase.Ssc.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Ssc.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Ssc.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.ssc.eg.db/bioconductor-lrbase.ssc.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Ssc.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Ssc.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.ssc.eg.db/bioconductor-lrbase.ssc.eg.db_1.1.0_src_all.tar.gz" ) -MD5="9d3d86ae876cccc7dd930ae11dfa9c65" +MD5="69c6671a220035023b7a3bb8c4d43258" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbase.xtr.eg.db/meta.yaml b/recipes/bioconductor-lrbase.xtr.eg.db/meta.yaml index 24d2a6f8caeb7..c45b98c99be35 100644 --- a/recipes/bioconductor-lrbase.xtr.eg.db/meta.yaml +++ b/recipes/bioconductor-lrbase.xtr.eg.db/meta.yaml @@ -1,6 +1,6 @@ -{% set version = "0.99.1" %} +{% set version = "1.1.0" %} {% set name = "LRBase.Xtr.eg.db" %} -{% set bioc = "3.8" %} +{% set bioc = "3.9" %} package: name: 'bioconductor-{{ name|lower }}' @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 15a623c432ff779fd062087b836eabbb + md5: 63701739513e0f845bd7328e0534b488 build: number: 0 rpaths: @@ -20,14 +20,14 @@ build: # Suggests: RUnit, BiocGenerics requirements: host: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite run: - - 'bioconductor-lrbasedbi >=1.0.0,<1.1.0' + - 'bioconductor-lrbasedbi >=1.2.0,<1.3.0' - r-base - r-rsqlite - - wget + - curl test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-lrbase.xtr.eg.db/post-link.sh b/recipes/bioconductor-lrbase.xtr.eg.db/post-link.sh index 38f89c9e3c066..dabc9650515c4 100644 --- a/recipes/bioconductor-lrbase.xtr.eg.db/post-link.sh +++ b/recipes/bioconductor-lrbase.xtr.eg.db/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="LRBase.Xtr.eg.db_0.99.1.tar.gz" +FN="LRBase.Xtr.eg.db_1.1.0.tar.gz" URLS=( - "https://bioconductor.org/packages/3.8/data/annotation/src/contrib/LRBase.Xtr.eg.db_0.99.1.tar.gz" - "https://bioarchive.galaxyproject.org/LRBase.Xtr.eg.db_0.99.1.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-lrbase.xtr.eg.db/bioconductor-lrbase.xtr.eg.db_0.99.1_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/LRBase.Xtr.eg.db_1.1.0.tar.gz" + "https://bioarchive.galaxyproject.org/LRBase.Xtr.eg.db_1.1.0.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lrbase.xtr.eg.db/bioconductor-lrbase.xtr.eg.db_1.1.0_src_all.tar.gz" ) -MD5="15a623c432ff779fd062087b836eabbb" +MD5="63701739513e0f845bd7328e0534b488" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable @@ -16,7 +16,7 @@ TARBALL=$STAGING/$FN SUCCESS=0 for URL in ${URLS[@]}; do - wget -O- -q $URL > $TARBALL + curl $URL > $TARBALL [[ $? == 0 ]] || continue # Platform-specific md5sum checks. diff --git a/recipes/bioconductor-lrbasedbi/meta.yaml b/recipes/bioconductor-lrbasedbi/meta.yaml index 12647b057ef2b..b406f22111efe 100644 --- a/recipes/bioconductor-lrbasedbi/meta.yaml +++ b/recipes/bioconductor-lrbasedbi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6ea76caccdee3afc0765ace6a3ee6370 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lumi/meta.yaml b/recipes/bioconductor-lumi/meta.yaml index 59571f855c5e8..6e75c3f23c02d 100644 --- a/recipes/bioconductor-lumi/meta.yaml +++ b/recipes/bioconductor-lumi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cb0925407710d86cc84f39ff5f971fe9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lumibarnes/meta.yaml b/recipes/bioconductor-lumibarnes/meta.yaml index 352e35f996059..3d87fbdc8e2f7 100644 --- a/recipes/bioconductor-lumibarnes/meta.yaml +++ b/recipes/bioconductor-lumibarnes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b611fcdaf9f3f878f2122a2a67fe946a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lumibarnes/post-link.sh b/recipes/bioconductor-lumibarnes/post-link.sh index 27f00281d12d4..51ad7f474f8b0 100644 --- a/recipes/bioconductor-lumibarnes/post-link.sh +++ b/recipes/bioconductor-lumibarnes/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/lumiBarnes_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/lumiBarnes_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-lumibarnes/bioconductor-lumibarnes_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lumibarnes/bioconductor-lumibarnes_1.24.0_src_all.tar.gz" ) MD5="b611fcdaf9f3f878f2122a2a67fe946a" diff --git a/recipes/bioconductor-lumihumanall.db/meta.yaml b/recipes/bioconductor-lumihumanall.db/meta.yaml index 7c6ce634d746c..3aaf56c7ac7b4 100644 --- a/recipes/bioconductor-lumihumanall.db/meta.yaml +++ b/recipes/bioconductor-lumihumanall.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ce7e219b50833ceab203f0bbfb11d917 build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lumihumanidmapping/meta.yaml b/recipes/bioconductor-lumihumanidmapping/meta.yaml index 1259647d56017..5b9befa0264a8 100644 --- a/recipes/bioconductor-lumihumanidmapping/meta.yaml +++ b/recipes/bioconductor-lumihumanidmapping/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 007e5aa2f1596cc08d888ba6dce7148a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lumimouseall.db/meta.yaml b/recipes/bioconductor-lumimouseall.db/meta.yaml index 663505b563e0b..79665dc232356 100644 --- a/recipes/bioconductor-lumimouseall.db/meta.yaml +++ b/recipes/bioconductor-lumimouseall.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f12330377aaddc83bfa9c37477b999e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lumimouseidmapping/meta.yaml b/recipes/bioconductor-lumimouseidmapping/meta.yaml index 9e3cd1011de7e..401c597cca682 100644 --- a/recipes/bioconductor-lumimouseidmapping/meta.yaml +++ b/recipes/bioconductor-lumimouseidmapping/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 305aba80ebf6ef4c26899302ea9e50e8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lumiratall.db/meta.yaml b/recipes/bioconductor-lumiratall.db/meta.yaml index 96002e0d2f0f8..7de2c9e2c66cf 100644 --- a/recipes/bioconductor-lumiratall.db/meta.yaml +++ b/recipes/bioconductor-lumiratall.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 65027624574d5e33f18b0a54a54f4be9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lumiratidmapping/meta.yaml b/recipes/bioconductor-lumiratidmapping/meta.yaml index a9e561916d2aa..e4013ec5657af 100644 --- a/recipes/bioconductor-lumiratidmapping/meta.yaml +++ b/recipes/bioconductor-lumiratidmapping/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1122fc25e3fff62678bed36f9d7b5709 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lungcanceracvssccgeo/meta.yaml b/recipes/bioconductor-lungcanceracvssccgeo/meta.yaml index 846ca91c550ac..de1109f9d8025 100644 --- a/recipes/bioconductor-lungcanceracvssccgeo/meta.yaml +++ b/recipes/bioconductor-lungcanceracvssccgeo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4a61ccf290a9409dc3126805139c4577 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lungcanceracvssccgeo/post-link.sh b/recipes/bioconductor-lungcanceracvssccgeo/post-link.sh index 03dfa6620ea89..188c9db59b518 100644 --- a/recipes/bioconductor-lungcanceracvssccgeo/post-link.sh +++ b/recipes/bioconductor-lungcanceracvssccgeo/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/LungCancerACvsSCCGEO_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/LungCancerACvsSCCGEO_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-lungcanceracvssccgeo/bioconductor-lungcanceracvssccgeo_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lungcanceracvssccgeo/bioconductor-lungcanceracvssccgeo_1.20.0_src_all.tar.gz" ) MD5="4a61ccf290a9409dc3126805139c4577" diff --git a/recipes/bioconductor-lungcancerlines/meta.yaml b/recipes/bioconductor-lungcancerlines/meta.yaml index 1d6b7394e82ab..b6401d536d5d8 100644 --- a/recipes/bioconductor-lungcancerlines/meta.yaml +++ b/recipes/bioconductor-lungcancerlines/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 96f8ced18a07cd538b51bd1d9bf5f50a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lungcancerlines/post-link.sh b/recipes/bioconductor-lungcancerlines/post-link.sh index 116d97f0ef957..227cafeacc27f 100644 --- a/recipes/bioconductor-lungcancerlines/post-link.sh +++ b/recipes/bioconductor-lungcancerlines/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/LungCancerLines_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/LungCancerLines_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-lungcancerlines/bioconductor-lungcancerlines_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lungcancerlines/bioconductor-lungcancerlines_0.22.0_src_all.tar.gz" ) MD5="96f8ced18a07cd538b51bd1d9bf5f50a" diff --git a/recipes/bioconductor-lungexpression/meta.yaml b/recipes/bioconductor-lungexpression/meta.yaml index 71704f22a015d..3091f9d302c38 100644 --- a/recipes/bioconductor-lungexpression/meta.yaml +++ b/recipes/bioconductor-lungexpression/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ca0abb60a770427af34dbe8f5498effc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lungexpression/post-link.sh b/recipes/bioconductor-lungexpression/post-link.sh index 2507147a3b176..28ea077be0046 100644 --- a/recipes/bioconductor-lungexpression/post-link.sh +++ b/recipes/bioconductor-lungexpression/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/lungExpression_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/lungExpression_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-lungexpression/bioconductor-lungexpression_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lungexpression/bioconductor-lungexpression_0.22.0_src_all.tar.gz" ) MD5="ca0abb60a770427af34dbe8f5498effc" diff --git a/recipes/bioconductor-lvsmirna/meta.yaml b/recipes/bioconductor-lvsmirna/meta.yaml index 1e281d7baf06b..f4f7f19417692 100644 --- a/recipes/bioconductor-lvsmirna/meta.yaml +++ b/recipes/bioconductor-lvsmirna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6e6961cde4bccf6e492cfe3283c2b490 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lydata/meta.yaml b/recipes/bioconductor-lydata/meta.yaml index 8efd1852e9696..e5fc0e6b96837 100644 --- a/recipes/bioconductor-lydata/meta.yaml +++ b/recipes/bioconductor-lydata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ddb7b13ac19ac940d615d9cb7ff14770 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-lydata/post-link.sh b/recipes/bioconductor-lydata/post-link.sh index af49d42fb182f..c7349705926f6 100644 --- a/recipes/bioconductor-lydata/post-link.sh +++ b/recipes/bioconductor-lydata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/lydata_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/lydata_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-lydata/bioconductor-lydata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-lydata/bioconductor-lydata_1.10.0_src_all.tar.gz" ) MD5="ddb7b13ac19ac940d615d9cb7ff14770" diff --git a/recipes/bioconductor-lymphoseq/meta.yaml b/recipes/bioconductor-lymphoseq/meta.yaml index 3436e7bd6814b..9e58f281db111 100644 --- a/recipes/bioconductor-lymphoseq/meta.yaml +++ b/recipes/bioconductor-lymphoseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8f0f2ee5a5a72794136a79e4ee8ecc98 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,7 +22,7 @@ requirements: host: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - 'bioconductor-ggtree >=1.16.0,<1.17.0' - - 'bioconductor-lymphoseqdb >=1.0.0,<1.1.0' + - 'bioconductor-lymphoseqdb >=0.99.0,<0.100.0' - 'bioconductor-msa >=1.16.0,<1.17.0' - r-base - r-circlize @@ -40,7 +40,7 @@ requirements: run: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - 'bioconductor-ggtree >=1.16.0,<1.17.0' - - 'bioconductor-lymphoseqdb >=1.0.0,<1.1.0' + - 'bioconductor-lymphoseqdb >=0.99.0,<0.100.0' - 'bioconductor-msa >=1.16.0,<1.17.0' - r-base - r-circlize diff --git a/recipes/bioconductor-lymphoseqdb/meta.yaml b/recipes/bioconductor-lymphoseqdb/meta.yaml index 264490cc25ab2..37d30fed0bbf3 100644 --- a/recipes/bioconductor-lymphoseqdb/meta.yaml +++ b/recipes/bioconductor-lymphoseqdb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 22fc0dc2439ef497982a5ffddda1e418 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-m10kcod.db/meta.yaml b/recipes/bioconductor-m10kcod.db/meta.yaml index ea2bc42faae2a..c3fe74f8dd31d 100644 --- a/recipes/bioconductor-m10kcod.db/meta.yaml +++ b/recipes/bioconductor-m10kcod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 04811628e4b37cd6d24e0b2a17d79ab8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-m20kcod.db/meta.yaml b/recipes/bioconductor-m20kcod.db/meta.yaml index f224557dc2a13..80562cbcccefd 100644 --- a/recipes/bioconductor-m20kcod.db/meta.yaml +++ b/recipes/bioconductor-m20kcod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f2f734fb41e1ae4e949abf09687733bf build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-m3c/meta.yaml b/recipes/bioconductor-m3c/meta.yaml index 465371e14ddad..51b6284cfcde9 100644 --- a/recipes/bioconductor-m3c/meta.yaml +++ b/recipes/bioconductor-m3c/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f23daab52c79f49bafba10a97f6bed97 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-m3d/meta.yaml b/recipes/bioconductor-m3d/meta.yaml index ea7fc8b604e62..ded3a54ed23ab 100644 --- a/recipes/bioconductor-m3d/meta.yaml +++ b/recipes/bioconductor-m3d/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 68024daf277220047ac158ce60b1f461 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-m3dexampledata/meta.yaml b/recipes/bioconductor-m3dexampledata/meta.yaml index b38adec8a1e1a..e265bfc6df208 100644 --- a/recipes/bioconductor-m3dexampledata/meta.yaml +++ b/recipes/bioconductor-m3dexampledata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ddaac0734044e83b21ecf67eb3532eb7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-m3dexampledata/post-link.sh b/recipes/bioconductor-m3dexampledata/post-link.sh index d2fddd33ac997..e10ae62fb269b 100644 --- a/recipes/bioconductor-m3dexampledata/post-link.sh +++ b/recipes/bioconductor-m3dexampledata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/M3DExampleData_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/M3DExampleData_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-m3dexampledata/bioconductor-m3dexampledata_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-m3dexampledata/bioconductor-m3dexampledata_1.10.0_src_all.tar.gz" ) MD5="ddaac0734044e83b21ecf67eb3532eb7" diff --git a/recipes/bioconductor-m3drop/meta.yaml b/recipes/bioconductor-m3drop/meta.yaml index 913be110d2876..2aa39afed159f 100644 --- a/recipes/bioconductor-m3drop/meta.yaml +++ b/recipes/bioconductor-m3drop/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9683152b6e21fa7f3078e84619bff56b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maanova/meta.yaml b/recipes/bioconductor-maanova/meta.yaml index 679abb608128d..16cd365bc2942 100644 --- a/recipes/bioconductor-maanova/meta.yaml +++ b/recipes/bioconductor-maanova/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5e95bee8b96e44435ec6d3d482ee2ceb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-macat/meta.yaml b/recipes/bioconductor-macat/meta.yaml index 535182c14efaa..d7dd75f957bae 100644 --- a/recipes/bioconductor-macat/meta.yaml +++ b/recipes/bioconductor-macat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f6f33205bbc943513b0ad8bcfcf1acfb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-macorrplot/meta.yaml b/recipes/bioconductor-macorrplot/meta.yaml index 7e8bf08773572..3c30bc03155fc 100644 --- a/recipes/bioconductor-macorrplot/meta.yaml +++ b/recipes/bioconductor-macorrplot/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e7a012e07292b0a09b4ab3b781d7e609 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-macpet/meta.yaml b/recipes/bioconductor-macpet/meta.yaml index 5f9dd10ae4714..256a77c0646a2 100644 --- a/recipes/bioconductor-macpet/meta.yaml +++ b/recipes/bioconductor-macpet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 194312a63083aaf1fe4333ecab11fd12 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-macrophage/meta.yaml b/recipes/bioconductor-macrophage/meta.yaml index b63f6187b89e0..f0960a8bac265 100644 --- a/recipes/bioconductor-macrophage/meta.yaml +++ b/recipes/bioconductor-macrophage/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 323708aa316444965821e5662ef2ee7d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-macrophage/post-link.sh b/recipes/bioconductor-macrophage/post-link.sh index d2da2cced8e9f..fc9eac0f8ea26 100644 --- a/recipes/bioconductor-macrophage/post-link.sh +++ b/recipes/bioconductor-macrophage/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/macrophage_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/macrophage_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-macrophage/bioconductor-macrophage_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-macrophage/bioconductor-macrophage_1.0.0_src_all.tar.gz" ) MD5="323708aa316444965821e5662ef2ee7d" diff --git a/recipes/bioconductor-made4/meta.yaml b/recipes/bioconductor-made4/meta.yaml index 17f0682197c93..05c0ec3166619 100644 --- a/recipes/bioconductor-made4/meta.yaml +++ b/recipes/bioconductor-made4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 00c2a89c91fb59c1ee485cd754d8f538 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-madseq/meta.yaml b/recipes/bioconductor-madseq/meta.yaml index 1bbbbea3ae9a0..43b969902937e 100644 --- a/recipes/bioconductor-madseq/meta.yaml +++ b/recipes/bioconductor-madseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7e62d154cf3cf3b0e18dd3987918ff47 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.1kgenomes.phase1.grch38/meta.yaml b/recipes/bioconductor-mafdb.1kgenomes.phase1.grch38/meta.yaml index fa4e8dd039917..960bf99febd4e 100644 --- a/recipes/bioconductor-mafdb.1kgenomes.phase1.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.1kgenomes.phase1.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 793705d2a4a4a80a770b436c0df52add build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.1kgenomes.phase1.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.1kgenomes.phase1.hs37d5/meta.yaml index a7d55a28bf9d3..10cd0d9a2f41f 100644 --- a/recipes/bioconductor-mafdb.1kgenomes.phase1.hs37d5/meta.yaml +++ b/recipes/bioconductor-mafdb.1kgenomes.phase1.hs37d5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a13d138f00d0f38642f1dfc6cc705050 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.1kgenomes.phase3.grch38/meta.yaml b/recipes/bioconductor-mafdb.1kgenomes.phase3.grch38/meta.yaml index 1a63b1fdacaf0..a6109b05accb3 100644 --- a/recipes/bioconductor-mafdb.1kgenomes.phase3.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.1kgenomes.phase3.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 062f9d00e3f0650806520cf39f3f9dac build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.1kgenomes.phase3.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.1kgenomes.phase3.hs37d5/meta.yaml index 018d616101c37..e1622f64dfced 100644 --- a/recipes/bioconductor-mafdb.1kgenomes.phase3.hs37d5/meta.yaml +++ b/recipes/bioconductor-mafdb.1kgenomes.phase3.hs37d5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a659554d3056e019b4f3a179e9628a2d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.esp6500si.v2.ssa137.grch38/meta.yaml b/recipes/bioconductor-mafdb.esp6500si.v2.ssa137.grch38/meta.yaml index 3150e86873da1..2e399e8962c93 100644 --- a/recipes/bioconductor-mafdb.esp6500si.v2.ssa137.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.esp6500si.v2.ssa137.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5c6afa001de76b91bc685c5c4b002b05 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5/meta.yaml index 3eda5fd1da6a9..adcd0a78f8c57 100644 --- a/recipes/bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5/meta.yaml +++ b/recipes/bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6ae9642f33195aca7c84240a8642eb8a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.exac.r1.0.grch38/meta.yaml b/recipes/bioconductor-mafdb.exac.r1.0.grch38/meta.yaml index 73e301e55dd08..e6f3935d03aea 100644 --- a/recipes/bioconductor-mafdb.exac.r1.0.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.exac.r1.0.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ab8ee4f77c84ecb0f8954f9cec199ef4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.exac.r1.0.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.exac.r1.0.hs37d5/meta.yaml index 117474de62500..6ed35f856e0c0 100644 --- a/recipes/bioconductor-mafdb.exac.r1.0.hs37d5/meta.yaml +++ b/recipes/bioconductor-mafdb.exac.r1.0.hs37d5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a4d494d62a02d808248a058e82e353fa build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml b/recipes/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml index 94502dcf5f3bf..d75e2f107f08e 100644 --- a/recipes/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3826e2d43f9b5cc614dec3ca1059b582 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5/meta.yaml index 19bddacf80394..76ce6748824de 100644 --- a/recipes/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5/meta.yaml +++ b/recipes/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f557aba8027c87df7bc0cac088b7eaa2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.gnomad.r2.0.1.grch38/meta.yaml b/recipes/bioconductor-mafdb.gnomad.r2.0.1.grch38/meta.yaml index 0d5bfa49e0057..5818f6a9d372d 100644 --- a/recipes/bioconductor-mafdb.gnomad.r2.0.1.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.gnomad.r2.0.1.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b20f9a0e1cc202c8ac9ee70e503ebada build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.gnomad.r2.0.1.grch38/post-link.sh b/recipes/bioconductor-mafdb.gnomad.r2.0.1.grch38/post-link.sh index 424af211b431c..1a243889c4a75 100644 --- a/recipes/bioconductor-mafdb.gnomad.r2.0.1.grch38/post-link.sh +++ b/recipes/bioconductor-mafdb.gnomad.r2.0.1.grch38/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MafDb.gnomAD.r2.0.1.GRCh38_3.9.0.tar.gz" "https://bioarchive.galaxyproject.org/MafDb.gnomAD.r2.0.1.GRCh38_3.9.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mafdb.gnomad.r2.0.1.grch38/bioconductor-mafdb.gnomad.r2.0.1.grch38_3.9.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mafdb.gnomad.r2.0.1.grch38/bioconductor-mafdb.gnomad.r2.0.1.grch38_3.9.0_src_all.tar.gz" ) MD5="b20f9a0e1cc202c8ac9ee70e503ebada" diff --git a/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/meta.yaml b/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/meta.yaml index bd8edaa2acaca..dd4cf666b968d 100644 --- a/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 867371efca8b4904f648ccb1e030213c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/post-link.sh b/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/post-link.sh index f7aa85e591160..403bfbb06cc9d 100644 --- a/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/post-link.sh +++ b/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MafDb.gnomAD.r2.1.GRCh38_3.9.0.tar.gz" "https://bioarchive.galaxyproject.org/MafDb.gnomAD.r2.1.GRCh38_3.9.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mafdb.gnomad.r2.1.grch38/bioconductor-mafdb.gnomad.r2.1.grch38_3.9.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mafdb.gnomad.r2.1.grch38/bioconductor-mafdb.gnomad.r2.1.grch38_3.9.0_src_all.tar.gz" ) MD5="867371efca8b4904f648ccb1e030213c" diff --git a/recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5/meta.yaml index 7b76fa5c0ef91..ec885100b7d4f 100644 --- a/recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5/meta.yaml +++ b/recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd068f564166d58bb18ebd380f6e431e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.gnomadex.r2.0.1.grch38/meta.yaml b/recipes/bioconductor-mafdb.gnomadex.r2.0.1.grch38/meta.yaml index e92e70e5aa1bf..0e900aa0adbe6 100644 --- a/recipes/bioconductor-mafdb.gnomadex.r2.0.1.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.gnomadex.r2.0.1.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dde927145675571aae324af3db7fe7be build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.gnomadex.r2.0.1.grch38/post-link.sh b/recipes/bioconductor-mafdb.gnomadex.r2.0.1.grch38/post-link.sh index 27705ed76fc9f..2d2161b411b9f 100644 --- a/recipes/bioconductor-mafdb.gnomadex.r2.0.1.grch38/post-link.sh +++ b/recipes/bioconductor-mafdb.gnomadex.r2.0.1.grch38/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MafDb.gnomADex.r2.0.1.GRCh38_3.9.0.tar.gz" "https://bioarchive.galaxyproject.org/MafDb.gnomADex.r2.0.1.GRCh38_3.9.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mafdb.gnomadex.r2.0.1.grch38/bioconductor-mafdb.gnomadex.r2.0.1.grch38_3.9.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mafdb.gnomadex.r2.0.1.grch38/bioconductor-mafdb.gnomadex.r2.0.1.grch38_3.9.0_src_all.tar.gz" ) MD5="dde927145675571aae324af3db7fe7be" diff --git a/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/meta.yaml b/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/meta.yaml index 91cb81e861acd..04b7b91809f01 100644 --- a/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/meta.yaml +++ b/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 16c0b79554bd5fc0b4942bba5eca1db2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/post-link.sh b/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/post-link.sh index b054010d220f3..fa36dd3639290 100644 --- a/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/post-link.sh +++ b/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MafDb.gnomADex.r2.1.GRCh38_3.9.0.tar.gz" "https://bioarchive.galaxyproject.org/MafDb.gnomADex.r2.1.GRCh38_3.9.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mafdb.gnomadex.r2.1.grch38/bioconductor-mafdb.gnomadex.r2.1.grch38_3.9.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mafdb.gnomadex.r2.1.grch38/bioconductor-mafdb.gnomadex.r2.1.grch38_3.9.0_src_all.tar.gz" ) MD5="16c0b79554bd5fc0b4942bba5eca1db2" diff --git a/recipes/bioconductor-mafdb.gnomadex.r2.1.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.gnomadex.r2.1.hs37d5/meta.yaml index 4234342d90cf1..b377347cfcbdb 100644 --- a/recipes/bioconductor-mafdb.gnomadex.r2.1.hs37d5/meta.yaml +++ b/recipes/bioconductor-mafdb.gnomadex.r2.1.hs37d5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 46272d8c1d0d811cf6471a7a6edd1ba2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.topmed.freeze5.hg19/meta.yaml b/recipes/bioconductor-mafdb.topmed.freeze5.hg19/meta.yaml index 243d6f34d08d0..882fdbe4604f0 100644 --- a/recipes/bioconductor-mafdb.topmed.freeze5.hg19/meta.yaml +++ b/recipes/bioconductor-mafdb.topmed.freeze5.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0606168d9e2764402a83042d57e6a87a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.topmed.freeze5.hg19/post-link.sh b/recipes/bioconductor-mafdb.topmed.freeze5.hg19/post-link.sh index ed9c300227858..15d1806f8df00 100644 --- a/recipes/bioconductor-mafdb.topmed.freeze5.hg19/post-link.sh +++ b/recipes/bioconductor-mafdb.topmed.freeze5.hg19/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MafDb.TOPMed.freeze5.hg19_3.9.0.tar.gz" "https://bioarchive.galaxyproject.org/MafDb.TOPMed.freeze5.hg19_3.9.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mafdb.topmed.freeze5.hg19/bioconductor-mafdb.topmed.freeze5.hg19_3.9.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mafdb.topmed.freeze5.hg19/bioconductor-mafdb.topmed.freeze5.hg19_3.9.0_src_all.tar.gz" ) MD5="0606168d9e2764402a83042d57e6a87a" diff --git a/recipes/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml b/recipes/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml index a640744815d87..f11c3fba8c9db 100644 --- a/recipes/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml +++ b/recipes/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b7522cfd7c3cd5266a0b7762ef5ba157 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mafdb.topmed.freeze5.hg38/post-link.sh b/recipes/bioconductor-mafdb.topmed.freeze5.hg38/post-link.sh index 870332296bc70..4ae9624c58720 100644 --- a/recipes/bioconductor-mafdb.topmed.freeze5.hg38/post-link.sh +++ b/recipes/bioconductor-mafdb.topmed.freeze5.hg38/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MafDb.TOPMed.freeze5.hg38_3.9.0.tar.gz" "https://bioarchive.galaxyproject.org/MafDb.TOPMed.freeze5.hg38_3.9.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mafdb.topmed.freeze5.hg38/bioconductor-mafdb.topmed.freeze5.hg38_3.9.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mafdb.topmed.freeze5.hg38/bioconductor-mafdb.topmed.freeze5.hg38_3.9.0_src_all.tar.gz" ) MD5="b7522cfd7c3cd5266a0b7762ef5ba157" diff --git a/recipes/bioconductor-maftools/meta.yaml b/recipes/bioconductor-maftools/meta.yaml index 354374b15fd84..861b11348a326 100644 --- a/recipes/bioconductor-maftools/meta.yaml +++ b/recipes/bioconductor-maftools/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.0.0" %} +{% set version = "2.0.10" %} {% set name = "maftools" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 5267d82afbeb9a7a1e4b7ba6b893fb72 + md5: f2cf698a95fe25ead9d5d384905edc1c build: number: 0 rpaths: diff --git a/recipes/bioconductor-mageckflute/meta.yaml b/recipes/bioconductor-mageckflute/meta.yaml index 5fdc88bd4327b..cc07eb5f6ed05 100644 --- a/recipes/bioconductor-mageckflute/meta.yaml +++ b/recipes/bioconductor-mageckflute/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.2" %} {% set name = "MAGeCKFlute" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 509658918962fbc8209d5199f640c8c4 + md5: 9b474aa27c03ace4385963c480d5df99 build: number: 0 rpaths: @@ -21,7 +21,6 @@ build: requirements: host: - 'bioconductor-biomart >=2.40.0,<2.41.0' - - 'bioconductor-bladderbatch >=1.22.0,<1.23.0' - 'bioconductor-clusterprofiler >=3.12.0,<3.13.0' - 'bioconductor-dose >=3.10.0,<3.11.0' - 'bioconductor-pathview >=1.24.0,<1.25.0' @@ -37,7 +36,6 @@ requirements: - r-png run: - 'bioconductor-biomart >=2.40.0,<2.41.0' - - 'bioconductor-bladderbatch >=1.22.0,<1.23.0' - 'bioconductor-clusterprofiler >=3.12.0,<3.13.0' - 'bioconductor-dose >=3.10.0,<3.11.0' - 'bioconductor-pathview >=1.24.0,<1.25.0' diff --git a/recipes/bioconductor-maigespack/meta.yaml b/recipes/bioconductor-maigespack/meta.yaml index 69ee8239cea69..b0247f9450861 100644 --- a/recipes/bioconductor-maigespack/meta.yaml +++ b/recipes/bioconductor-maigespack/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bd7b7b4a8952913853d1f25c342f671b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mait/meta.yaml b/recipes/bioconductor-mait/meta.yaml index 93ad061c729bb..0229f76f02215 100644 --- a/recipes/bioconductor-mait/meta.yaml +++ b/recipes/bioconductor-mait/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ebad68909a67b2224649a8ec8583d38c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maizecdf/meta.yaml b/recipes/bioconductor-maizecdf/meta.yaml index 4670a91d64fb7..377b46697514e 100644 --- a/recipes/bioconductor-maizecdf/meta.yaml +++ b/recipes/bioconductor-maizecdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f9dec9e46688d96daf1e07d4e815afb4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maizeprobe/meta.yaml b/recipes/bioconductor-maizeprobe/meta.yaml index 9b7c5ca35c263..3ca3f4a2626d1 100644 --- a/recipes/bioconductor-maizeprobe/meta.yaml +++ b/recipes/bioconductor-maizeprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ef7ba47de2346b3552621263399c05d1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-makecdfenv/meta.yaml b/recipes/bioconductor-makecdfenv/meta.yaml index 9cc243a1ad266..9bedcb66691dd 100644 --- a/recipes/bioconductor-makecdfenv/meta.yaml +++ b/recipes/bioconductor-makecdfenv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 79ef6ba4960a32d7691d7428a58aa89b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-malaria.db0/meta.yaml b/recipes/bioconductor-malaria.db0/meta.yaml index a5168b258f64b..e7dd9e2134f00 100644 --- a/recipes/bioconductor-malaria.db0/meta.yaml +++ b/recipes/bioconductor-malaria.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c6028e87fd7d4c72656a4f865d43e81a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-malaria.db0/post-link.sh b/recipes/bioconductor-malaria.db0/post-link.sh index 4c31c5e55348f..e1bdb36483b58 100644 --- a/recipes/bioconductor-malaria.db0/post-link.sh +++ b/recipes/bioconductor-malaria.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/malaria.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/malaria.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-malaria.db0/bioconductor-malaria.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-malaria.db0/bioconductor-malaria.db0_3.8.2_src_all.tar.gz" ) MD5="c6028e87fd7d4c72656a4f865d43e81a" diff --git a/recipes/bioconductor-mammaprintdata/meta.yaml b/recipes/bioconductor-mammaprintdata/meta.yaml index 93d30a0496002..ff055f1119db5 100644 --- a/recipes/bioconductor-mammaprintdata/meta.yaml +++ b/recipes/bioconductor-mammaprintdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 12cc4c98823e833df14c94a612bddad9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mammaprintdata/post-link.sh b/recipes/bioconductor-mammaprintdata/post-link.sh index 29acb2afc1521..970b025240a2e 100644 --- a/recipes/bioconductor-mammaprintdata/post-link.sh +++ b/recipes/bioconductor-mammaprintdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mammaPrintData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/mammaPrintData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mammaprintdata/bioconductor-mammaprintdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mammaprintdata/bioconductor-mammaprintdata_1.20.0_src_all.tar.gz" ) MD5="12cc4c98823e833df14c94a612bddad9" diff --git a/recipes/bioconductor-manor/meta.yaml b/recipes/bioconductor-manor/meta.yaml index ef57a514f6d40..1c913ad78c32f 100644 --- a/recipes/bioconductor-manor/meta.yaml +++ b/recipes/bioconductor-manor/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fa54da1038acb0b053315892539d8dd0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-manta/meta.yaml b/recipes/bioconductor-manta/meta.yaml index abec78d789dac..7622e7d825a1d 100644 --- a/recipes/bioconductor-manta/meta.yaml +++ b/recipes/bioconductor-manta/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0ceb88d84dff7742d4dcc6cc53e5ef2c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mantelcorr/meta.yaml b/recipes/bioconductor-mantelcorr/meta.yaml index f3f792d3cec26..07e35316a75f7 100644 --- a/recipes/bioconductor-mantelcorr/meta.yaml +++ b/recipes/bioconductor-mantelcorr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dd59c2cb7112102a25e153f10432ea6e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mapkl/build.sh b/recipes/bioconductor-mapkl/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-mapkl/build.sh +++ b/recipes/bioconductor-mapkl/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-mapkl/meta.yaml b/recipes/bioconductor-mapkl/meta.yaml index 8ad91efa2a358..1414de0fc5522 100644 --- a/recipes/bioconductor-mapkl/meta.yaml +++ b/recipes/bioconductor-mapkl/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.13.0" %} +{% set version = "1.14.1" %} {% set name = "mAPKL" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: e5763a6bb545a2f2cbc99b732717ada7 + md5: 116da278be7af23529028a147363ce80 build: number: 0 rpaths: @@ -19,6 +19,13 @@ build: noarch: generic # Suggests: BiocStyle, knitr, mAPKLData, hgu133plus2.db, RUnit, BiocGenerics requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-biobase >=2.44.0,<2.45.0' @@ -45,7 +52,7 @@ requirements: - r-parmigene test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>= 2)' diff --git a/recipes/bioconductor-mapkldata/meta.yaml b/recipes/bioconductor-mapkldata/meta.yaml index 2177acb72155a..fb78208cd9699 100644 --- a/recipes/bioconductor-mapkldata/meta.yaml +++ b/recipes/bioconductor-mapkldata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9a0bc0eb61a441595cbe17308a2c7d7c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mapkldata/post-link.sh b/recipes/bioconductor-mapkldata/post-link.sh index 03c56d84e8c3d..606f7efe731a0 100644 --- a/recipes/bioconductor-mapkldata/post-link.sh +++ b/recipes/bioconductor-mapkldata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mAPKLData_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/mAPKLData_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mapkldata/bioconductor-mapkldata_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mapkldata/bioconductor-mapkldata_1.16.0_src_all.tar.gz" ) MD5="9a0bc0eb61a441595cbe17308a2c7d7c" diff --git a/recipes/bioconductor-mapredictdsc/meta.yaml b/recipes/bioconductor-mapredictdsc/meta.yaml index ce238c33c6bc7..564bf8f067c3b 100644 --- a/recipes/bioconductor-mapredictdsc/meta.yaml +++ b/recipes/bioconductor-mapredictdsc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2d5cd443eb8639b69b8421686a834a79 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mapscape/meta.yaml b/recipes/bioconductor-mapscape/meta.yaml index f320ccce33a37..cbc5797bef782 100644 --- a/recipes/bioconductor-mapscape/meta.yaml +++ b/recipes/bioconductor-mapscape/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c9408c2837e9ddeacfcf9f676b4589d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maqcexpression4plex/meta.yaml b/recipes/bioconductor-maqcexpression4plex/meta.yaml index e72a2a8037f25..a1bd455530aa4 100644 --- a/recipes/bioconductor-maqcexpression4plex/meta.yaml +++ b/recipes/bioconductor-maqcexpression4plex/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fa9ecd1de4f0ee49935ea8620c3605e2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maqcexpression4plex/post-link.sh b/recipes/bioconductor-maqcexpression4plex/post-link.sh index a8af52a79173d..994d51233055b 100644 --- a/recipes/bioconductor-maqcexpression4plex/post-link.sh +++ b/recipes/bioconductor-maqcexpression4plex/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/maqcExpression4plex_1.28.0.tar.gz" "https://bioarchive.galaxyproject.org/maqcExpression4plex_1.28.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-maqcexpression4plex/bioconductor-maqcexpression4plex_1.28.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-maqcexpression4plex/bioconductor-maqcexpression4plex_1.28.0_src_all.tar.gz" ) MD5="fa9ecd1de4f0ee49935ea8620c3605e2" diff --git a/recipes/bioconductor-maqcsubset/meta.yaml b/recipes/bioconductor-maqcsubset/meta.yaml index 844cc24131d93..3418a00c9404a 100644 --- a/recipes/bioconductor-maqcsubset/meta.yaml +++ b/recipes/bioconductor-maqcsubset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 97b078cd701d3c46e2ad4342570b7e51 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maqcsubset/post-link.sh b/recipes/bioconductor-maqcsubset/post-link.sh index 36d1aa151bb76..471b20a032535 100644 --- a/recipes/bioconductor-maqcsubset/post-link.sh +++ b/recipes/bioconductor-maqcsubset/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MAQCsubset_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/MAQCsubset_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-maqcsubset/bioconductor-maqcsubset_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-maqcsubset/bioconductor-maqcsubset_1.22.0_src_all.tar.gz" ) MD5="97b078cd701d3c46e2ad4342570b7e51" diff --git a/recipes/bioconductor-maqcsubsetafx/meta.yaml b/recipes/bioconductor-maqcsubsetafx/meta.yaml index d89cc6ab25425..d3f5eda6670f1 100644 --- a/recipes/bioconductor-maqcsubsetafx/meta.yaml +++ b/recipes/bioconductor-maqcsubsetafx/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c361d50c4fa96fe0fb4a8fa47f5b1522 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maqcsubsetafx/post-link.sh b/recipes/bioconductor-maqcsubsetafx/post-link.sh index 5e1a015c7d1a8..55e409fb8ab91 100644 --- a/recipes/bioconductor-maqcsubsetafx/post-link.sh +++ b/recipes/bioconductor-maqcsubsetafx/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MAQCsubsetAFX_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/MAQCsubsetAFX_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-maqcsubsetafx/bioconductor-maqcsubsetafx_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-maqcsubsetafx/bioconductor-maqcsubsetafx_1.22.0_src_all.tar.gz" ) MD5="c361d50c4fa96fe0fb4a8fa47f5b1522" diff --git a/recipes/bioconductor-maqcsubsetilm/meta.yaml b/recipes/bioconductor-maqcsubsetilm/meta.yaml index ead3b5b04af99..131f3b3ee5135 100644 --- a/recipes/bioconductor-maqcsubsetilm/meta.yaml +++ b/recipes/bioconductor-maqcsubsetilm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 29ec94614e117e09ca659d61b071618b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maqcsubsetilm/post-link.sh b/recipes/bioconductor-maqcsubsetilm/post-link.sh index 81a28bce9d6c3..ac0e14cb7429e 100644 --- a/recipes/bioconductor-maqcsubsetilm/post-link.sh +++ b/recipes/bioconductor-maqcsubsetilm/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MAQCsubsetILM_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/MAQCsubsetILM_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-maqcsubsetilm/bioconductor-maqcsubsetilm_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-maqcsubsetilm/bioconductor-maqcsubsetilm_1.22.0_src_all.tar.gz" ) MD5="29ec94614e117e09ca659d61b071618b" diff --git a/recipes/bioconductor-marray/meta.yaml b/recipes/bioconductor-marray/meta.yaml index 9eaefbb3c3d46..77f1c7187a02d 100644 --- a/recipes/bioconductor-marray/meta.yaml +++ b/recipes/bioconductor-marray/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d2628eb19ca37a181402798dc8543ec9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-martini/meta.yaml b/recipes/bioconductor-martini/meta.yaml index 92414d514373d..c743174f3872a 100644 --- a/recipes/bioconductor-martini/meta.yaml +++ b/recipes/bioconductor-martini/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 55b0a9fc5a85e9499c83db57640c0472 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maser/meta.yaml b/recipes/bioconductor-maser/meta.yaml index 43aaa40dd112e..69f3d44718fd5 100644 --- a/recipes/bioconductor-maser/meta.yaml +++ b/recipes/bioconductor-maser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: faf35d96da67a1559eb6c9eb65b34280 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-masigpro/meta.yaml b/recipes/bioconductor-masigpro/meta.yaml index 75eeaa6e11daf..ea9a576d3ad0d 100644 --- a/recipes/bioconductor-masigpro/meta.yaml +++ b/recipes/bioconductor-masigpro/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0b3ed0e8fd063fbf6700d64d2300082a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maskbad/meta.yaml b/recipes/bioconductor-maskbad/meta.yaml index fbbc8e9bed30d..f612242c79221 100644 --- a/recipes/bioconductor-maskbad/meta.yaml +++ b/recipes/bioconductor-maskbad/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 908a121329b4d59a384fb44921547c5c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-massarray/meta.yaml b/recipes/bioconductor-massarray/meta.yaml index f74eb0c40d8cb..81667faf5698e 100644 --- a/recipes/bioconductor-massarray/meta.yaml +++ b/recipes/bioconductor-massarray/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9bcb895ad4c9c4e7100d65de88baf906 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-massir/meta.yaml b/recipes/bioconductor-massir/meta.yaml index b5b8801a52a5b..a41bb7d5a8947 100644 --- a/recipes/bioconductor-massir/meta.yaml +++ b/recipes/bioconductor-massir/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f5a3d0d1e7f63a5da7bd5dc4d7bfbbdd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-massspecwavelet/meta.yaml b/recipes/bioconductor-massspecwavelet/meta.yaml index a9101b4c7bb18..b29ac213101e3 100644 --- a/recipes/bioconductor-massspecwavelet/meta.yaml +++ b/recipes/bioconductor-massspecwavelet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6715f272814bb903e02be64a15d18a0c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mast/meta.yaml b/recipes/bioconductor-mast/meta.yaml index ccb9596dcbe50..62fe5327937a7 100644 --- a/recipes/bioconductor-mast/meta.yaml +++ b/recipes/bioconductor-mast/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6095a6cedbe585761fbb1c8df4ce9ea6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-matchbox/meta.yaml b/recipes/bioconductor-matchbox/meta.yaml index 803bd8bc72be2..e060edafba46a 100644 --- a/recipes/bioconductor-matchbox/meta.yaml +++ b/recipes/bioconductor-matchbox/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cb3a8fdbf40e1dc8d26533bb1fd6a7f8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-matrixrider/meta.yaml b/recipes/bioconductor-matrixrider/meta.yaml index 6aa2a4f87a6aa..8239fb63966a6 100644 --- a/recipes/bioconductor-matrixrider/meta.yaml +++ b/recipes/bioconductor-matrixrider/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7f85bfa32fc6a25b3b6987e8a3f064fa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-matter/meta.yaml b/recipes/bioconductor-matter/meta.yaml index a202a3a390a2a..e620d3c40e24e 100644 --- a/recipes/bioconductor-matter/meta.yaml +++ b/recipes/bioconductor-matter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 80c2d4693acc88b40867e100e4ade2dd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-maxcontrastprojection/meta.yaml b/recipes/bioconductor-maxcontrastprojection/meta.yaml index ba6f382151844..92f52290d3017 100644 --- a/recipes/bioconductor-maxcontrastprojection/meta.yaml +++ b/recipes/bioconductor-maxcontrastprojection/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a4636912f434c1ec7ecfe24743e77a06 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mbamethyl/meta.yaml b/recipes/bioconductor-mbamethyl/meta.yaml index a95e2621bfc26..38374aafeaccb 100644 --- a/recipes/bioconductor-mbamethyl/meta.yaml +++ b/recipes/bioconductor-mbamethyl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 46b488829917ef5750391463877be1ab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mbased/meta.yaml b/recipes/bioconductor-mbased/meta.yaml index f248c919d3efa..63deec80b765d 100644 --- a/recipes/bioconductor-mbased/meta.yaml +++ b/recipes/bioconductor-mbased/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 992a08870864f79fa226791b969c3b8b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mbcb/meta.yaml b/recipes/bioconductor-mbcb/meta.yaml index 2b83c96099c63..a5c9d19f54f30 100644 --- a/recipes/bioconductor-mbcb/meta.yaml +++ b/recipes/bioconductor-mbcb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fa2a4736e30c0df5d78602349fda7852 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mbkmeans/meta.yaml b/recipes/bioconductor-mbkmeans/meta.yaml index 7823b81a8c469..3671bbc96e8e8 100644 --- a/recipes/bioconductor-mbkmeans/meta.yaml +++ b/recipes/bioconductor-mbkmeans/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d48afe30bbd4b7fc336a4e3021442e73 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mbpcr/meta.yaml b/recipes/bioconductor-mbpcr/meta.yaml index e24e7b5601ca9..9c5522496b5a6 100644 --- a/recipes/bioconductor-mbpcr/meta.yaml +++ b/recipes/bioconductor-mbpcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c7a90c7e1527258452c9793cb06532ab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mbttest/meta.yaml b/recipes/bioconductor-mbttest/meta.yaml index b76aacf2e1d5a..61983151a0dc5 100644 --- a/recipes/bioconductor-mbttest/meta.yaml +++ b/recipes/bioconductor-mbttest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d65acd60c9194c071d70909738d8363c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mcagui/build.sh b/recipes/bioconductor-mcagui/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-mcagui/build.sh +++ b/recipes/bioconductor-mcagui/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-mcagui/meta.yaml b/recipes/bioconductor-mcagui/meta.yaml index 64ba74ba0388b..c7292f934143c 100644 --- a/recipes/bioconductor-mcagui/meta.yaml +++ b/recipes/bioconductor-mcagui/meta.yaml @@ -12,12 +12,19 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1b55ca169ec63abfd1a4ca454cbbd8a7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-otubase >=1.34.0,<1.35.0' - r-base @@ -42,9 +49,12 @@ requirements: - r-vegan test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>= 2)' summary: 'Microbial community analysis GUI for R using gWidgets.' +extra: + container: + extended-base: true diff --git a/recipes/bioconductor-mcbiclust/meta.yaml b/recipes/bioconductor-mcbiclust/meta.yaml index af73d0f40bd5a..7401c34413767 100644 --- a/recipes/bioconductor-mcbiclust/meta.yaml +++ b/recipes/bioconductor-mcbiclust/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 48e7603efa86b31fff7a2a9d50cf5b78 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mcrestimate/meta.yaml b/recipes/bioconductor-mcrestimate/meta.yaml index 9f01c39ac9892..0f0b810d3054b 100644 --- a/recipes/bioconductor-mcrestimate/meta.yaml +++ b/recipes/bioconductor-mcrestimate/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a76acf3b63978eb5a1cf9c99540c5d19 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mcsea/meta.yaml b/recipes/bioconductor-mcsea/meta.yaml index b32e3b73fda50..29867e788f6de 100644 --- a/recipes/bioconductor-mcsea/meta.yaml +++ b/recipes/bioconductor-mcsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7a9cabd1953c0e519ee9efe5fa6476d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -25,7 +25,7 @@ requirements: - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-gviz >=1.28.0,<1.29.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-mcseadata >=1.4.0,<1.5.0' @@ -39,7 +39,7 @@ requirements: - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-gviz >=1.28.0,<1.29.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-mcseadata >=1.4.0,<1.5.0' diff --git a/recipes/bioconductor-mcseadata/meta.yaml b/recipes/bioconductor-mcseadata/meta.yaml index c29cb7840b787..6051fb31553f4 100644 --- a/recipes/bioconductor-mcseadata/meta.yaml +++ b/recipes/bioconductor-mcseadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2ababb1156ca58b2075b8a78841f2d7b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mcseadata/post-link.sh b/recipes/bioconductor-mcseadata/post-link.sh index 249905aa32088..34dfea68b583c 100644 --- a/recipes/bioconductor-mcseadata/post-link.sh +++ b/recipes/bioconductor-mcseadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mCSEAdata_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/mCSEAdata_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mcseadata/bioconductor-mcseadata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mcseadata/bioconductor-mcseadata_1.4.0_src_all.tar.gz" ) MD5="2ababb1156ca58b2075b8a78841f2d7b" diff --git a/recipes/bioconductor-mcsurvdata/meta.yaml b/recipes/bioconductor-mcsurvdata/meta.yaml index 4550819e33736..d6a6208f7528a 100644 --- a/recipes/bioconductor-mcsurvdata/meta.yaml +++ b/recipes/bioconductor-mcsurvdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3e2204677f27ed5f9a47551a24963bdd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mcsurvdata/post-link.sh b/recipes/bioconductor-mcsurvdata/post-link.sh index 5b7189d731431..d0f44cda72e54 100644 --- a/recipes/bioconductor-mcsurvdata/post-link.sh +++ b/recipes/bioconductor-mcsurvdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mcsurvdata_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/mcsurvdata_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mcsurvdata/bioconductor-mcsurvdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mcsurvdata/bioconductor-mcsurvdata_1.2.0_src_all.tar.gz" ) MD5="3e2204677f27ed5f9a47551a24963bdd" diff --git a/recipes/bioconductor-mdgsa/meta.yaml b/recipes/bioconductor-mdgsa/meta.yaml index c58bff72c6fea..a41ef25335b65 100644 --- a/recipes/bioconductor-mdgsa/meta.yaml +++ b/recipes/bioconductor-mdgsa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d2c1c33f82b90c3c12dfa048b879d6aa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mdp/meta.yaml b/recipes/bioconductor-mdp/meta.yaml index a993dd2eb1e72..73a9df0266b45 100644 --- a/recipes/bioconductor-mdp/meta.yaml +++ b/recipes/bioconductor-mdp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 251498b10ed231066befda17a853a5b9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mdqc/meta.yaml b/recipes/bioconductor-mdqc/meta.yaml index 76761713664c7..c7f1ec784aef0 100644 --- a/recipes/bioconductor-mdqc/meta.yaml +++ b/recipes/bioconductor-mdqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 79dff4086686e27cc40bec33c13475b2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mdts/meta.yaml b/recipes/bioconductor-mdts/meta.yaml index e7e64925634ae..b833823c7fc40 100644 --- a/recipes/bioconductor-mdts/meta.yaml +++ b/recipes/bioconductor-mdts/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0e8eb9fb588b9952a92ce0dd081b70fc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-meal/meta.yaml b/recipes/bioconductor-meal/meta.yaml index 1d642842e7b7d..c9113d3cfaaac 100644 --- a/recipes/bioconductor-meal/meta.yaml +++ b/recipes/bioconductor-meal/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1d54fb22bf6fe39a3fbc7674e7d6372 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-measurementerror.cor/meta.yaml b/recipes/bioconductor-measurementerror.cor/meta.yaml index c7097e62dd965..f183ba8050657 100644 --- a/recipes/bioconductor-measurementerror.cor/meta.yaml +++ b/recipes/bioconductor-measurementerror.cor/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5a2fbc85ddce4e114407282ba1289d7a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-medicagocdf/meta.yaml b/recipes/bioconductor-medicagocdf/meta.yaml index 7088c01c62962..463dd5382e4a5 100644 --- a/recipes/bioconductor-medicagocdf/meta.yaml +++ b/recipes/bioconductor-medicagocdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1fbb2e4c070344d18e65f1b3993867db build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-medicagoprobe/meta.yaml b/recipes/bioconductor-medicagoprobe/meta.yaml index 420ef4e77402e..cebf5901f07a2 100644 --- a/recipes/bioconductor-medicagoprobe/meta.yaml +++ b/recipes/bioconductor-medicagoprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 83b9887ad2ed26c704b0ca7115e5838d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-medips/meta.yaml b/recipes/bioconductor-medips/meta.yaml index cded5c3397988..242b8c123dbe1 100644 --- a/recipes/bioconductor-medips/meta.yaml +++ b/recipes/bioconductor-medips/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 91aa3cc0532aa4d5778c256eea57e8de build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-medipsdata/meta.yaml b/recipes/bioconductor-medipsdata/meta.yaml index 84105a00ab43f..90f408e2b1bac 100644 --- a/recipes/bioconductor-medipsdata/meta.yaml +++ b/recipes/bioconductor-medipsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1f78f8ed24c8c17f2ceb8847a7b05ec1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-medipsdata/post-link.sh b/recipes/bioconductor-medipsdata/post-link.sh index 8be0d2f0d15ce..c08deed7ab1fc 100644 --- a/recipes/bioconductor-medipsdata/post-link.sh +++ b/recipes/bioconductor-medipsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MEDIPSData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/MEDIPSData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-medipsdata/bioconductor-medipsdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-medipsdata/bioconductor-medipsdata_1.20.0_src_all.tar.gz" ) MD5="1f78f8ed24c8c17f2ceb8847a7b05ec1" diff --git a/recipes/bioconductor-medme/meta.yaml b/recipes/bioconductor-medme/meta.yaml index 984b07f1ff4ee..ea3a35fed87b8 100644 --- a/recipes/bioconductor-medme/meta.yaml +++ b/recipes/bioconductor-medme/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 62985b7b4ebe51262d25380963c26d4a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-meebodata/meta.yaml b/recipes/bioconductor-meebodata/meta.yaml index f6078a3cc6ef9..f9c5b7b0870ce 100644 --- a/recipes/bioconductor-meebodata/meta.yaml +++ b/recipes/bioconductor-meebodata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 95cc758068d87d1b741390a5e0b5a30c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-meebodata/post-link.sh b/recipes/bioconductor-meebodata/post-link.sh index acc9a15d40215..22d31b828f309 100644 --- a/recipes/bioconductor-meebodata/post-link.sh +++ b/recipes/bioconductor-meebodata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MEEBOdata_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/MEEBOdata_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-meebodata/bioconductor-meebodata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-meebodata/bioconductor-meebodata_1.22.0_src_all.tar.gz" ) MD5="95cc758068d87d1b741390a5e0b5a30c" diff --git a/recipes/bioconductor-meigor/meta.yaml b/recipes/bioconductor-meigor/meta.yaml index a685c248888d6..224d8cc19ecd0 100644 --- a/recipes/bioconductor-meigor/meta.yaml +++ b/recipes/bioconductor-meigor/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7f8232f8bc699168903b7f124bd890eb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-melissa/meta.yaml b/recipes/bioconductor-melissa/meta.yaml index 194357fc70109..f5cf5d2b5645b 100644 --- a/recipes/bioconductor-melissa/meta.yaml +++ b/recipes/bioconductor-melissa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1c43fd1e2d6fd481079f43eac08c5483 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mergemaid/meta.yaml b/recipes/bioconductor-mergemaid/meta.yaml index 80cc5b3eddd00..7e3997ffa1a59 100644 --- a/recipes/bioconductor-mergemaid/meta.yaml +++ b/recipes/bioconductor-mergemaid/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 85560308a14870e7e571a1a517830836 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mergeomics/meta.yaml b/recipes/bioconductor-mergeomics/meta.yaml index c6dfeff4cb542..8e65a65b43e8d 100644 --- a/recipes/bioconductor-mergeomics/meta.yaml +++ b/recipes/bioconductor-mergeomics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b199d231ce140214caac7667f3142dad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.aca.eg.db/meta.yaml b/recipes/bioconductor-mesh.aca.eg.db/meta.yaml index f9398abce0271..b71968ea9c8c6 100644 --- a/recipes/bioconductor-mesh.aca.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.aca.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5e2a81ebf27098b81e4ed973301b2caa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.aca.eg.db/post-link.sh b/recipes/bioconductor-mesh.aca.eg.db/post-link.sh index 36d667fdfe753..190bf64899be2 100644 --- a/recipes/bioconductor-mesh.aca.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.aca.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Aca.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Aca.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.aca.eg.db/bioconductor-mesh.aca.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.aca.eg.db/bioconductor-mesh.aca.eg.db_1.12.0_src_all.tar.gz" ) MD5="5e2a81ebf27098b81e4ed973301b2caa" diff --git a/recipes/bioconductor-mesh.aga.pest.eg.db/meta.yaml b/recipes/bioconductor-mesh.aga.pest.eg.db/meta.yaml index a4d73c3ab227c..eaba4093defeb 100644 --- a/recipes/bioconductor-mesh.aga.pest.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.aga.pest.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 55d9c4c29db06de62d39143b2de46dbd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.aga.pest.eg.db/post-link.sh b/recipes/bioconductor-mesh.aga.pest.eg.db/post-link.sh index 388b62f5b1f63..69c587375fef3 100644 --- a/recipes/bioconductor-mesh.aga.pest.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.aga.pest.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Aga.PEST.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Aga.PEST.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.aga.pest.eg.db/bioconductor-mesh.aga.pest.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.aga.pest.eg.db/bioconductor-mesh.aga.pest.eg.db_1.12.0_src_all.tar.gz" ) MD5="55d9c4c29db06de62d39143b2de46dbd" diff --git a/recipes/bioconductor-mesh.ame.eg.db/meta.yaml b/recipes/bioconductor-mesh.ame.eg.db/meta.yaml index 93c5b47667649..e7efd0a480063 100644 --- a/recipes/bioconductor-mesh.ame.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.ame.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 77f92103ca5a4cc50d4faea41acf6e5d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.ame.eg.db/post-link.sh b/recipes/bioconductor-mesh.ame.eg.db/post-link.sh index b602f87beab33..92ae618158dc2 100644 --- a/recipes/bioconductor-mesh.ame.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.ame.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Ame.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Ame.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.ame.eg.db/bioconductor-mesh.ame.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.ame.eg.db/bioconductor-mesh.ame.eg.db_1.12.0_src_all.tar.gz" ) MD5="77f92103ca5a4cc50d4faea41acf6e5d" diff --git a/recipes/bioconductor-mesh.aml.eg.db/meta.yaml b/recipes/bioconductor-mesh.aml.eg.db/meta.yaml index f1821d9e73bbf..99ca644857fe5 100644 --- a/recipes/bioconductor-mesh.aml.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.aml.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d6b7340f71e068a815aec178367a4963 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.aml.eg.db/post-link.sh b/recipes/bioconductor-mesh.aml.eg.db/post-link.sh index 8241bdc380e70..b44322f14171e 100644 --- a/recipes/bioconductor-mesh.aml.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.aml.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Aml.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Aml.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.aml.eg.db/bioconductor-mesh.aml.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.aml.eg.db/bioconductor-mesh.aml.eg.db_1.12.0_src_all.tar.gz" ) MD5="d6b7340f71e068a815aec178367a4963" diff --git a/recipes/bioconductor-mesh.ana.eg.db/meta.yaml b/recipes/bioconductor-mesh.ana.eg.db/meta.yaml index ded12263aef65..766d20641c9f8 100644 --- a/recipes/bioconductor-mesh.ana.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.ana.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 32877b98b506fea152de79ddd580442e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.ana.eg.db/post-link.sh b/recipes/bioconductor-mesh.ana.eg.db/post-link.sh index 2e1456d8f5c48..edbba7f15106d 100644 --- a/recipes/bioconductor-mesh.ana.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.ana.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Ana.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Ana.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.ana.eg.db/bioconductor-mesh.ana.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.ana.eg.db/bioconductor-mesh.ana.eg.db_1.12.0_src_all.tar.gz" ) MD5="32877b98b506fea152de79ddd580442e" diff --git a/recipes/bioconductor-mesh.ani.fgsc.eg.db/meta.yaml b/recipes/bioconductor-mesh.ani.fgsc.eg.db/meta.yaml index aa805b457cddc..7c0688dc4a5c8 100644 --- a/recipes/bioconductor-mesh.ani.fgsc.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.ani.fgsc.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1d9c0e500981f4b7df7dc67e9c59d89 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.ani.fgsc.eg.db/post-link.sh b/recipes/bioconductor-mesh.ani.fgsc.eg.db/post-link.sh index 0e11dd99ed9a9..b3b07bad538ab 100644 --- a/recipes/bioconductor-mesh.ani.fgsc.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.ani.fgsc.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Ani.FGSC.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Ani.FGSC.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.ani.fgsc.eg.db/bioconductor-mesh.ani.fgsc.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.ani.fgsc.eg.db/bioconductor-mesh.ani.fgsc.eg.db_1.12.0_src_all.tar.gz" ) MD5="f1d9c0e500981f4b7df7dc67e9c59d89" diff --git a/recipes/bioconductor-mesh.aor.db/meta.yaml b/recipes/bioconductor-mesh.aor.db/meta.yaml index 0d66ad9d5223b..56274332e27c3 100644 --- a/recipes/bioconductor-mesh.aor.db/meta.yaml +++ b/recipes/bioconductor-mesh.aor.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ed748fe3fab893d25073a2ce14a8820f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.aor.db/post-link.sh b/recipes/bioconductor-mesh.aor.db/post-link.sh index fb597f41c2e86..0e3027ad0b7e3 100644 --- a/recipes/bioconductor-mesh.aor.db/post-link.sh +++ b/recipes/bioconductor-mesh.aor.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.AOR.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.AOR.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.aor.db/bioconductor-mesh.aor.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.aor.db/bioconductor-mesh.aor.db_1.12.0_src_all.tar.gz" ) MD5="ed748fe3fab893d25073a2ce14a8820f" diff --git a/recipes/bioconductor-mesh.ath.eg.db/meta.yaml b/recipes/bioconductor-mesh.ath.eg.db/meta.yaml index be42be1fd8616..25298056014b9 100644 --- a/recipes/bioconductor-mesh.ath.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.ath.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b051c34b72cccb24d822e1e4aa53ec52 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.ath.eg.db/post-link.sh b/recipes/bioconductor-mesh.ath.eg.db/post-link.sh index f13ae0d9ee410..1b7c45c29b79a 100644 --- a/recipes/bioconductor-mesh.ath.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.ath.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Ath.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Ath.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.ath.eg.db/bioconductor-mesh.ath.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.ath.eg.db/bioconductor-mesh.ath.eg.db_1.12.0_src_all.tar.gz" ) MD5="b051c34b72cccb24d822e1e4aa53ec52" diff --git a/recipes/bioconductor-mesh.bfl.eg.db/meta.yaml b/recipes/bioconductor-mesh.bfl.eg.db/meta.yaml index 8ae8e11bcca21..695b0652d8f99 100644 --- a/recipes/bioconductor-mesh.bfl.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.bfl.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e587f2b53c1ce51bcf241ee4c7a978a9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.bfl.eg.db/post-link.sh b/recipes/bioconductor-mesh.bfl.eg.db/post-link.sh index 2ddaa492aa84b..4cf030e144e1c 100644 --- a/recipes/bioconductor-mesh.bfl.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.bfl.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Bfl.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Bfl.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.bfl.eg.db/bioconductor-mesh.bfl.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.bfl.eg.db/bioconductor-mesh.bfl.eg.db_1.12.0_src_all.tar.gz" ) MD5="e587f2b53c1ce51bcf241ee4c7a978a9" diff --git a/recipes/bioconductor-mesh.bsu.168.eg.db/meta.yaml b/recipes/bioconductor-mesh.bsu.168.eg.db/meta.yaml index 1335a3cdfb5b5..3875a24780edf 100644 --- a/recipes/bioconductor-mesh.bsu.168.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.bsu.168.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89464279a892e7faab76f91a086b3fa4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.bsu.168.eg.db/post-link.sh b/recipes/bioconductor-mesh.bsu.168.eg.db/post-link.sh index a1e5bde8232f3..fcb754d8875ea 100644 --- a/recipes/bioconductor-mesh.bsu.168.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.bsu.168.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Bsu.168.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Bsu.168.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.bsu.168.eg.db/bioconductor-mesh.bsu.168.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.bsu.168.eg.db/bioconductor-mesh.bsu.168.eg.db_1.12.0_src_all.tar.gz" ) MD5="89464279a892e7faab76f91a086b3fa4" diff --git a/recipes/bioconductor-mesh.bta.eg.db/meta.yaml b/recipes/bioconductor-mesh.bta.eg.db/meta.yaml index 879547f234c15..36a8877dd8833 100644 --- a/recipes/bioconductor-mesh.bta.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.bta.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1b6213dfe7731258b867fbe8ede5e592 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.bta.eg.db/post-link.sh b/recipes/bioconductor-mesh.bta.eg.db/post-link.sh index 3e98e69ae09df..61c4825d087d2 100644 --- a/recipes/bioconductor-mesh.bta.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.bta.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Bta.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Bta.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.bta.eg.db/bioconductor-mesh.bta.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.bta.eg.db/bioconductor-mesh.bta.eg.db_1.12.0_src_all.tar.gz" ) MD5="1b6213dfe7731258b867fbe8ede5e592" diff --git a/recipes/bioconductor-mesh.cal.sc5314.eg.db/meta.yaml b/recipes/bioconductor-mesh.cal.sc5314.eg.db/meta.yaml index 6ff711ee86012..8aedb517dbeb7 100644 --- a/recipes/bioconductor-mesh.cal.sc5314.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.cal.sc5314.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 011b57f3115f1809dfd3af611c430734 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.cal.sc5314.eg.db/post-link.sh b/recipes/bioconductor-mesh.cal.sc5314.eg.db/post-link.sh index 1e7f33268902d..704bfe5ff568f 100644 --- a/recipes/bioconductor-mesh.cal.sc5314.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.cal.sc5314.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Cal.SC5314.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Cal.SC5314.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.cal.sc5314.eg.db/bioconductor-mesh.cal.sc5314.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.cal.sc5314.eg.db/bioconductor-mesh.cal.sc5314.eg.db_1.12.0_src_all.tar.gz" ) MD5="011b57f3115f1809dfd3af611c430734" diff --git a/recipes/bioconductor-mesh.cbr.eg.db/meta.yaml b/recipes/bioconductor-mesh.cbr.eg.db/meta.yaml index fffe558d3ec00..5c149ad5dd6a7 100644 --- a/recipes/bioconductor-mesh.cbr.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.cbr.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ea955abefc52da00ec50e395e3285692 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.cbr.eg.db/post-link.sh b/recipes/bioconductor-mesh.cbr.eg.db/post-link.sh index 70e27b45eeb6f..190dfd9b9ae44 100644 --- a/recipes/bioconductor-mesh.cbr.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.cbr.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Cbr.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Cbr.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.cbr.eg.db/bioconductor-mesh.cbr.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.cbr.eg.db/bioconductor-mesh.cbr.eg.db_1.12.0_src_all.tar.gz" ) MD5="ea955abefc52da00ec50e395e3285692" diff --git a/recipes/bioconductor-mesh.cel.eg.db/meta.yaml b/recipes/bioconductor-mesh.cel.eg.db/meta.yaml index 86954223e9d1b..78fb83bc24b37 100644 --- a/recipes/bioconductor-mesh.cel.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.cel.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3f373ac2b09e5049b85a9702fc64a957 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.cel.eg.db/post-link.sh b/recipes/bioconductor-mesh.cel.eg.db/post-link.sh index ee9591f8e0ed7..cb14ee1d1d49d 100644 --- a/recipes/bioconductor-mesh.cel.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.cel.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Cel.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Cel.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.cel.eg.db/bioconductor-mesh.cel.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.cel.eg.db/bioconductor-mesh.cel.eg.db_1.12.0_src_all.tar.gz" ) MD5="3f373ac2b09e5049b85a9702fc64a957" diff --git a/recipes/bioconductor-mesh.cfa.eg.db/meta.yaml b/recipes/bioconductor-mesh.cfa.eg.db/meta.yaml index 73b94a8ac9dac..210e10cc12afd 100644 --- a/recipes/bioconductor-mesh.cfa.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.cfa.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ec99f0c24e61b6c39335bbb2faf4ca3d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.cfa.eg.db/post-link.sh b/recipes/bioconductor-mesh.cfa.eg.db/post-link.sh index 5f9c6f96a872b..d92a19ea43993 100644 --- a/recipes/bioconductor-mesh.cfa.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.cfa.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Cfa.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Cfa.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.cfa.eg.db/bioconductor-mesh.cfa.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.cfa.eg.db/bioconductor-mesh.cfa.eg.db_1.12.0_src_all.tar.gz" ) MD5="ec99f0c24e61b6c39335bbb2faf4ca3d" diff --git a/recipes/bioconductor-mesh.cin.eg.db/meta.yaml b/recipes/bioconductor-mesh.cin.eg.db/meta.yaml index 5d6c63dc3f1a5..48493ec16f153 100644 --- a/recipes/bioconductor-mesh.cin.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.cin.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89b55b0ecb065acd391242d1d23136b2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.cin.eg.db/post-link.sh b/recipes/bioconductor-mesh.cin.eg.db/post-link.sh index 1f23513b314e1..fd81cef61e7d7 100644 --- a/recipes/bioconductor-mesh.cin.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.cin.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Cin.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Cin.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.cin.eg.db/bioconductor-mesh.cin.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.cin.eg.db/bioconductor-mesh.cin.eg.db_1.12.0_src_all.tar.gz" ) MD5="89b55b0ecb065acd391242d1d23136b2" diff --git a/recipes/bioconductor-mesh.cja.eg.db/meta.yaml b/recipes/bioconductor-mesh.cja.eg.db/meta.yaml index 251a6e0bdad0a..93fc85f312577 100644 --- a/recipes/bioconductor-mesh.cja.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.cja.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2182ecdced26c7705696f9c2453d7c24 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.cja.eg.db/post-link.sh b/recipes/bioconductor-mesh.cja.eg.db/post-link.sh index 975f013597def..c70bc1fa3229f 100644 --- a/recipes/bioconductor-mesh.cja.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.cja.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Cja.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Cja.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.cja.eg.db/bioconductor-mesh.cja.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.cja.eg.db/bioconductor-mesh.cja.eg.db_1.12.0_src_all.tar.gz" ) MD5="2182ecdced26c7705696f9c2453d7c24" diff --git a/recipes/bioconductor-mesh.cpo.eg.db/meta.yaml b/recipes/bioconductor-mesh.cpo.eg.db/meta.yaml index 506934b3f5e73..84dc6fa846d61 100644 --- a/recipes/bioconductor-mesh.cpo.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.cpo.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8d2f3999d655a72c3775080651944333 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.cpo.eg.db/post-link.sh b/recipes/bioconductor-mesh.cpo.eg.db/post-link.sh index aa9177d652563..53f6c33955018 100644 --- a/recipes/bioconductor-mesh.cpo.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.cpo.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Cpo.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Cpo.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.cpo.eg.db/bioconductor-mesh.cpo.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.cpo.eg.db/bioconductor-mesh.cpo.eg.db_1.12.0_src_all.tar.gz" ) MD5="8d2f3999d655a72c3775080651944333" diff --git a/recipes/bioconductor-mesh.cre.eg.db/meta.yaml b/recipes/bioconductor-mesh.cre.eg.db/meta.yaml index 7415458429ba0..8e5492c76fa86 100644 --- a/recipes/bioconductor-mesh.cre.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.cre.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 34a3c416c910bfbdde1febc66fcf8a02 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.cre.eg.db/post-link.sh b/recipes/bioconductor-mesh.cre.eg.db/post-link.sh index 9eb869bc2a1cb..e3292a603e7c0 100644 --- a/recipes/bioconductor-mesh.cre.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.cre.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Cre.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Cre.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.cre.eg.db/bioconductor-mesh.cre.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.cre.eg.db/bioconductor-mesh.cre.eg.db_1.12.0_src_all.tar.gz" ) MD5="34a3c416c910bfbdde1febc66fcf8a02" diff --git a/recipes/bioconductor-mesh.dan.eg.db/meta.yaml b/recipes/bioconductor-mesh.dan.eg.db/meta.yaml index 83605718c9bb9..e9104ac3bf965 100644 --- a/recipes/bioconductor-mesh.dan.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dan.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bac1907757c826866d96ea6a6f0290e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dan.eg.db/post-link.sh b/recipes/bioconductor-mesh.dan.eg.db/post-link.sh index 8bee837d570e0..cbedad345d599 100644 --- a/recipes/bioconductor-mesh.dan.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dan.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dan.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dan.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dan.eg.db/bioconductor-mesh.dan.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dan.eg.db/bioconductor-mesh.dan.eg.db_1.12.0_src_all.tar.gz" ) MD5="bac1907757c826866d96ea6a6f0290e7" diff --git a/recipes/bioconductor-mesh.db/meta.yaml b/recipes/bioconductor-mesh.db/meta.yaml index a30dd9158df30..f0394ab316835 100644 --- a/recipes/bioconductor-mesh.db/meta.yaml +++ b/recipes/bioconductor-mesh.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d4e468c076c3e7548f24a8a569c9e087 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.db/post-link.sh b/recipes/bioconductor-mesh.db/post-link.sh index 2d515b14bcb98..9881926b85813 100644 --- a/recipes/bioconductor-mesh.db/post-link.sh +++ b/recipes/bioconductor-mesh.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.db/bioconductor-mesh.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.db/bioconductor-mesh.db_1.12.0_src_all.tar.gz" ) MD5="d4e468c076c3e7548f24a8a569c9e087" diff --git a/recipes/bioconductor-mesh.dda.3937.eg.db/meta.yaml b/recipes/bioconductor-mesh.dda.3937.eg.db/meta.yaml index e6650a00f6e24..7270fbc0cea75 100644 --- a/recipes/bioconductor-mesh.dda.3937.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dda.3937.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5480a4fde51d0aaf3d33628fcd0c08bd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dda.3937.eg.db/post-link.sh b/recipes/bioconductor-mesh.dda.3937.eg.db/post-link.sh index 4a4f8126fb655..08e3a406b01b1 100644 --- a/recipes/bioconductor-mesh.dda.3937.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dda.3937.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dda.3937.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dda.3937.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dda.3937.eg.db/bioconductor-mesh.dda.3937.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dda.3937.eg.db/bioconductor-mesh.dda.3937.eg.db_1.12.0_src_all.tar.gz" ) MD5="5480a4fde51d0aaf3d33628fcd0c08bd" diff --git a/recipes/bioconductor-mesh.ddi.ax4.eg.db/meta.yaml b/recipes/bioconductor-mesh.ddi.ax4.eg.db/meta.yaml index 794944bb999ee..049ae81d31a42 100644 --- a/recipes/bioconductor-mesh.ddi.ax4.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.ddi.ax4.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 69e13d6fc6e627ae014dcc8813ab5e9a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.ddi.ax4.eg.db/post-link.sh b/recipes/bioconductor-mesh.ddi.ax4.eg.db/post-link.sh index 7d903b6c307f1..5a80f6d3b28eb 100644 --- a/recipes/bioconductor-mesh.ddi.ax4.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.ddi.ax4.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Ddi.AX4.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Ddi.AX4.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.ddi.ax4.eg.db/bioconductor-mesh.ddi.ax4.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.ddi.ax4.eg.db/bioconductor-mesh.ddi.ax4.eg.db_1.12.0_src_all.tar.gz" ) MD5="69e13d6fc6e627ae014dcc8813ab5e9a" diff --git a/recipes/bioconductor-mesh.der.eg.db/meta.yaml b/recipes/bioconductor-mesh.der.eg.db/meta.yaml index 88b0e6d054de2..8c0275f66def7 100644 --- a/recipes/bioconductor-mesh.der.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.der.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f45c156f0b1c80404a365c0fa72b40d1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.der.eg.db/post-link.sh b/recipes/bioconductor-mesh.der.eg.db/post-link.sh index 1f33e4524677b..013c7dea82341 100644 --- a/recipes/bioconductor-mesh.der.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.der.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Der.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Der.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.der.eg.db/bioconductor-mesh.der.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.der.eg.db/bioconductor-mesh.der.eg.db_1.12.0_src_all.tar.gz" ) MD5="f45c156f0b1c80404a365c0fa72b40d1" diff --git a/recipes/bioconductor-mesh.dgr.eg.db/meta.yaml b/recipes/bioconductor-mesh.dgr.eg.db/meta.yaml index 46be7b4a4f85e..e19afabf789a5 100644 --- a/recipes/bioconductor-mesh.dgr.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dgr.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5c897dd84151aac1251479dc95813d19 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dgr.eg.db/post-link.sh b/recipes/bioconductor-mesh.dgr.eg.db/post-link.sh index d395fa341fe97..cc2761838d107 100644 --- a/recipes/bioconductor-mesh.dgr.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dgr.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dgr.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dgr.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dgr.eg.db/bioconductor-mesh.dgr.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dgr.eg.db/bioconductor-mesh.dgr.eg.db_1.12.0_src_all.tar.gz" ) MD5="5c897dd84151aac1251479dc95813d19" diff --git a/recipes/bioconductor-mesh.dme.eg.db/meta.yaml b/recipes/bioconductor-mesh.dme.eg.db/meta.yaml index 415c70582c333..efe520031fe62 100644 --- a/recipes/bioconductor-mesh.dme.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dme.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 24b5a3cb6e8a5ad695d6282ac852475f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dme.eg.db/post-link.sh b/recipes/bioconductor-mesh.dme.eg.db/post-link.sh index 9c7dc41a9e0e1..c17a20570466b 100644 --- a/recipes/bioconductor-mesh.dme.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dme.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dme.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dme.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dme.eg.db/bioconductor-mesh.dme.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dme.eg.db/bioconductor-mesh.dme.eg.db_1.12.0_src_all.tar.gz" ) MD5="24b5a3cb6e8a5ad695d6282ac852475f" diff --git a/recipes/bioconductor-mesh.dmo.eg.db/meta.yaml b/recipes/bioconductor-mesh.dmo.eg.db/meta.yaml index b6469251a8cda..6518d34eca466 100644 --- a/recipes/bioconductor-mesh.dmo.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dmo.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89c488b437d119d4120b8e0709df5ed0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dmo.eg.db/post-link.sh b/recipes/bioconductor-mesh.dmo.eg.db/post-link.sh index 494afb9de29a7..364959d9f2cea 100644 --- a/recipes/bioconductor-mesh.dmo.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dmo.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dmo.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dmo.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dmo.eg.db/bioconductor-mesh.dmo.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dmo.eg.db/bioconductor-mesh.dmo.eg.db_1.12.0_src_all.tar.gz" ) MD5="89c488b437d119d4120b8e0709df5ed0" diff --git a/recipes/bioconductor-mesh.dpe.eg.db/meta.yaml b/recipes/bioconductor-mesh.dpe.eg.db/meta.yaml index 0150e7c8397b3..d9bef1bca0506 100644 --- a/recipes/bioconductor-mesh.dpe.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dpe.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 269bdc39765da0193b19ce6b408ceb3a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dpe.eg.db/post-link.sh b/recipes/bioconductor-mesh.dpe.eg.db/post-link.sh index 12c1dd1efa889..ebdb259cfc7a4 100644 --- a/recipes/bioconductor-mesh.dpe.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dpe.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dpe.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dpe.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dpe.eg.db/bioconductor-mesh.dpe.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dpe.eg.db/bioconductor-mesh.dpe.eg.db_1.12.0_src_all.tar.gz" ) MD5="269bdc39765da0193b19ce6b408ceb3a" diff --git a/recipes/bioconductor-mesh.dre.eg.db/meta.yaml b/recipes/bioconductor-mesh.dre.eg.db/meta.yaml index 792c985505370..291c920036cb2 100644 --- a/recipes/bioconductor-mesh.dre.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dre.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89700462b20d1077637a5ea827e41dce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dre.eg.db/post-link.sh b/recipes/bioconductor-mesh.dre.eg.db/post-link.sh index 60f14299eff92..fff57e0e45a9e 100644 --- a/recipes/bioconductor-mesh.dre.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dre.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dre.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dre.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dre.eg.db/bioconductor-mesh.dre.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dre.eg.db/bioconductor-mesh.dre.eg.db_1.12.0_src_all.tar.gz" ) MD5="89700462b20d1077637a5ea827e41dce" diff --git a/recipes/bioconductor-mesh.dse.eg.db/meta.yaml b/recipes/bioconductor-mesh.dse.eg.db/meta.yaml index f52c7781c9bca..12c5f64180c9e 100644 --- a/recipes/bioconductor-mesh.dse.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dse.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8276661907001767b21ace678385713d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dse.eg.db/post-link.sh b/recipes/bioconductor-mesh.dse.eg.db/post-link.sh index 8e6b49595ca18..8e20ea26e21e9 100644 --- a/recipes/bioconductor-mesh.dse.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dse.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dse.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dse.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dse.eg.db/bioconductor-mesh.dse.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dse.eg.db/bioconductor-mesh.dse.eg.db_1.12.0_src_all.tar.gz" ) MD5="8276661907001767b21ace678385713d" diff --git a/recipes/bioconductor-mesh.dsi.eg.db/meta.yaml b/recipes/bioconductor-mesh.dsi.eg.db/meta.yaml index e5dee4b7fbdff..c166e32cc506d 100644 --- a/recipes/bioconductor-mesh.dsi.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dsi.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6b5be7ed0d482654995818d5a4d40acf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dsi.eg.db/post-link.sh b/recipes/bioconductor-mesh.dsi.eg.db/post-link.sh index 0c7d4784ea58c..16e1bfc99bcfd 100644 --- a/recipes/bioconductor-mesh.dsi.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dsi.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dsi.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dsi.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dsi.eg.db/bioconductor-mesh.dsi.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dsi.eg.db/bioconductor-mesh.dsi.eg.db_1.12.0_src_all.tar.gz" ) MD5="6b5be7ed0d482654995818d5a4d40acf" diff --git a/recipes/bioconductor-mesh.dvi.eg.db/meta.yaml b/recipes/bioconductor-mesh.dvi.eg.db/meta.yaml index 62866c0edb85f..ce59380d44b7f 100644 --- a/recipes/bioconductor-mesh.dvi.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dvi.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d3ffd23cb6c89270b7919cccb922d57c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dvi.eg.db/post-link.sh b/recipes/bioconductor-mesh.dvi.eg.db/post-link.sh index 9cfe8d0f8b04c..4ca1023167b57 100644 --- a/recipes/bioconductor-mesh.dvi.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dvi.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dvi.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dvi.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dvi.eg.db/bioconductor-mesh.dvi.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dvi.eg.db/bioconductor-mesh.dvi.eg.db_1.12.0_src_all.tar.gz" ) MD5="d3ffd23cb6c89270b7919cccb922d57c" diff --git a/recipes/bioconductor-mesh.dya.eg.db/meta.yaml b/recipes/bioconductor-mesh.dya.eg.db/meta.yaml index 201d1d8d8c8fb..ecc6bd4066afb 100644 --- a/recipes/bioconductor-mesh.dya.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.dya.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a86aa0e7de6cd626aa26ce681988a7ef build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.dya.eg.db/post-link.sh b/recipes/bioconductor-mesh.dya.eg.db/post-link.sh index c09148f91fef2..111c19a9291fa 100644 --- a/recipes/bioconductor-mesh.dya.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.dya.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Dya.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Dya.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.dya.eg.db/bioconductor-mesh.dya.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.dya.eg.db/bioconductor-mesh.dya.eg.db_1.12.0_src_all.tar.gz" ) MD5="a86aa0e7de6cd626aa26ce681988a7ef" diff --git a/recipes/bioconductor-mesh.eco.55989.eg.db/meta.yaml b/recipes/bioconductor-mesh.eco.55989.eg.db/meta.yaml index f94636e0bfebe..819a0015ab0e9 100644 --- a/recipes/bioconductor-mesh.eco.55989.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.eco.55989.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5ce7bf538a544393e0a1f20447905f6e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.eco.55989.eg.db/post-link.sh b/recipes/bioconductor-mesh.eco.55989.eg.db/post-link.sh index 77b3ce008da9c..1d1a55a3c19ff 100644 --- a/recipes/bioconductor-mesh.eco.55989.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.eco.55989.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Eco.55989.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Eco.55989.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.55989.eg.db/bioconductor-mesh.eco.55989.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.55989.eg.db/bioconductor-mesh.eco.55989.eg.db_1.12.0_src_all.tar.gz" ) MD5="5ce7bf538a544393e0a1f20447905f6e" diff --git a/recipes/bioconductor-mesh.eco.ed1a.eg.db/meta.yaml b/recipes/bioconductor-mesh.eco.ed1a.eg.db/meta.yaml index 5ccf0a3cea45c..5f3821f457b82 100644 --- a/recipes/bioconductor-mesh.eco.ed1a.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.eco.ed1a.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 03e3d6d633bf57b80aeb866091ccebb5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.eco.ed1a.eg.db/post-link.sh b/recipes/bioconductor-mesh.eco.ed1a.eg.db/post-link.sh index 1e38147374fa6..2c7685fb1fea8 100644 --- a/recipes/bioconductor-mesh.eco.ed1a.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.eco.ed1a.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Eco.ED1a.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Eco.ED1a.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.ed1a.eg.db/bioconductor-mesh.eco.ed1a.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.ed1a.eg.db/bioconductor-mesh.eco.ed1a.eg.db_1.12.0_src_all.tar.gz" ) MD5="03e3d6d633bf57b80aeb866091ccebb5" diff --git a/recipes/bioconductor-mesh.eco.iai39.eg.db/meta.yaml b/recipes/bioconductor-mesh.eco.iai39.eg.db/meta.yaml index e21485baf794d..40d3d83dbf297 100644 --- a/recipes/bioconductor-mesh.eco.iai39.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.eco.iai39.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a08c7a3a0e24d574f230ccaa0fe077f2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.eco.iai39.eg.db/post-link.sh b/recipes/bioconductor-mesh.eco.iai39.eg.db/post-link.sh index 8de8c6f2bbb36..65024aa9d9fdf 100644 --- a/recipes/bioconductor-mesh.eco.iai39.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.eco.iai39.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Eco.IAI39.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Eco.IAI39.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.iai39.eg.db/bioconductor-mesh.eco.iai39.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.iai39.eg.db/bioconductor-mesh.eco.iai39.eg.db_1.12.0_src_all.tar.gz" ) MD5="a08c7a3a0e24d574f230ccaa0fe077f2" diff --git a/recipes/bioconductor-mesh.eco.k12.mg1655.eg.db/meta.yaml b/recipes/bioconductor-mesh.eco.k12.mg1655.eg.db/meta.yaml index 997db9628f557..09d24ee08cc54 100644 --- a/recipes/bioconductor-mesh.eco.k12.mg1655.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.eco.k12.mg1655.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 06187eebaa4970a42afc08a050e37c5b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.eco.k12.mg1655.eg.db/post-link.sh b/recipes/bioconductor-mesh.eco.k12.mg1655.eg.db/post-link.sh index 9b4d2c27653f9..da974e997a239 100644 --- a/recipes/bioconductor-mesh.eco.k12.mg1655.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.eco.k12.mg1655.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Eco.K12.MG1655.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Eco.K12.MG1655.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.k12.mg1655.eg.db/bioconductor-mesh.eco.k12.mg1655.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.k12.mg1655.eg.db/bioconductor-mesh.eco.k12.mg1655.eg.db_1.12.0_src_all.tar.gz" ) MD5="06187eebaa4970a42afc08a050e37c5b" diff --git a/recipes/bioconductor-mesh.eco.o157.h7.sakai.eg.db/meta.yaml b/recipes/bioconductor-mesh.eco.o157.h7.sakai.eg.db/meta.yaml index 07eb576b6d4e8..f5098465a8f63 100644 --- a/recipes/bioconductor-mesh.eco.o157.h7.sakai.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.eco.o157.h7.sakai.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2104ca21e2956dd186a0b15a0de27c08 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.eco.o157.h7.sakai.eg.db/post-link.sh b/recipes/bioconductor-mesh.eco.o157.h7.sakai.eg.db/post-link.sh index ade1d1b09fefd..cd86e0b4ac01e 100644 --- a/recipes/bioconductor-mesh.eco.o157.h7.sakai.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.eco.o157.h7.sakai.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Eco.O157.H7.Sakai.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Eco.O157.H7.Sakai.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.o157.h7.sakai.eg.db/bioconductor-mesh.eco.o157.h7.sakai.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.o157.h7.sakai.eg.db/bioconductor-mesh.eco.o157.h7.sakai.eg.db_1.12.0_src_all.tar.gz" ) MD5="2104ca21e2956dd186a0b15a0de27c08" diff --git a/recipes/bioconductor-mesh.eco.umn026.eg.db/meta.yaml b/recipes/bioconductor-mesh.eco.umn026.eg.db/meta.yaml index e79b6c4dbc077..58283249f83dc 100644 --- a/recipes/bioconductor-mesh.eco.umn026.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.eco.umn026.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d85896ef685ed1e603c8e3726c075c9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.eco.umn026.eg.db/post-link.sh b/recipes/bioconductor-mesh.eco.umn026.eg.db/post-link.sh index 36679f9fd4c9b..bb97c856ee32f 100644 --- a/recipes/bioconductor-mesh.eco.umn026.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.eco.umn026.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Eco.UMN026.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Eco.UMN026.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.umn026.eg.db/bioconductor-mesh.eco.umn026.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.eco.umn026.eg.db/bioconductor-mesh.eco.umn026.eg.db_1.12.0_src_all.tar.gz" ) MD5="7d85896ef685ed1e603c8e3726c075c9" diff --git a/recipes/bioconductor-mesh.eqc.eg.db/meta.yaml b/recipes/bioconductor-mesh.eqc.eg.db/meta.yaml index 7c36d54dd22f3..65292c3250345 100644 --- a/recipes/bioconductor-mesh.eqc.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.eqc.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 93f8af406857db4cd7684fb08feaea28 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.eqc.eg.db/post-link.sh b/recipes/bioconductor-mesh.eqc.eg.db/post-link.sh index 1942dd1c4faeb..d0bd512288bdc 100644 --- a/recipes/bioconductor-mesh.eqc.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.eqc.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Eqc.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Eqc.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.eqc.eg.db/bioconductor-mesh.eqc.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.eqc.eg.db/bioconductor-mesh.eqc.eg.db_1.12.0_src_all.tar.gz" ) MD5="93f8af406857db4cd7684fb08feaea28" diff --git a/recipes/bioconductor-mesh.gga.eg.db/meta.yaml b/recipes/bioconductor-mesh.gga.eg.db/meta.yaml index 4643196d5568c..4c90a3f8bf9b3 100644 --- a/recipes/bioconductor-mesh.gga.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.gga.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d95eac3889b634882499ab9a341aed74 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.gga.eg.db/post-link.sh b/recipes/bioconductor-mesh.gga.eg.db/post-link.sh index 17f9fb2474f4e..92db1619f4da4 100644 --- a/recipes/bioconductor-mesh.gga.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.gga.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Gga.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Gga.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.gga.eg.db/bioconductor-mesh.gga.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.gga.eg.db/bioconductor-mesh.gga.eg.db_1.12.0_src_all.tar.gz" ) MD5="d95eac3889b634882499ab9a341aed74" diff --git a/recipes/bioconductor-mesh.gma.eg.db/meta.yaml b/recipes/bioconductor-mesh.gma.eg.db/meta.yaml index 81216016094a0..92ab42622a3fc 100644 --- a/recipes/bioconductor-mesh.gma.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.gma.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2e9f6010abcbdae5138d90a6feb0b614 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.gma.eg.db/post-link.sh b/recipes/bioconductor-mesh.gma.eg.db/post-link.sh index 28b73eec25a2f..f3ab00793831d 100644 --- a/recipes/bioconductor-mesh.gma.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.gma.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Gma.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Gma.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.gma.eg.db/bioconductor-mesh.gma.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.gma.eg.db/bioconductor-mesh.gma.eg.db_1.12.0_src_all.tar.gz" ) MD5="2e9f6010abcbdae5138d90a6feb0b614" diff --git a/recipes/bioconductor-mesh.hsa.eg.db/meta.yaml b/recipes/bioconductor-mesh.hsa.eg.db/meta.yaml index 03e4dd87b84cf..9dfc2a75907d7 100644 --- a/recipes/bioconductor-mesh.hsa.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.hsa.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f501a99a6f8dee9d14290897f5b0051 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.hsa.eg.db/post-link.sh b/recipes/bioconductor-mesh.hsa.eg.db/post-link.sh index 2fc66c7b2c316..ef44d2b44c271 100644 --- a/recipes/bioconductor-mesh.hsa.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.hsa.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Hsa.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Hsa.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.hsa.eg.db/bioconductor-mesh.hsa.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.hsa.eg.db/bioconductor-mesh.hsa.eg.db_1.12.0_src_all.tar.gz" ) MD5="6f501a99a6f8dee9d14290897f5b0051" diff --git a/recipes/bioconductor-mesh.laf.eg.db/meta.yaml b/recipes/bioconductor-mesh.laf.eg.db/meta.yaml index 0b57e3a87addf..d5fe5f998f2f9 100644 --- a/recipes/bioconductor-mesh.laf.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.laf.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 309db1c0bfabafdf67dd7d8bd923a4bb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.laf.eg.db/post-link.sh b/recipes/bioconductor-mesh.laf.eg.db/post-link.sh index 017c32f0f8ef6..045484edf3947 100644 --- a/recipes/bioconductor-mesh.laf.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.laf.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Laf.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Laf.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.laf.eg.db/bioconductor-mesh.laf.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.laf.eg.db/bioconductor-mesh.laf.eg.db_1.12.0_src_all.tar.gz" ) MD5="309db1c0bfabafdf67dd7d8bd923a4bb" diff --git a/recipes/bioconductor-mesh.lma.eg.db/meta.yaml b/recipes/bioconductor-mesh.lma.eg.db/meta.yaml index 58f68dbb96e63..f770c87ab13a2 100644 --- a/recipes/bioconductor-mesh.lma.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.lma.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 721401ba48afbb7607bbeed319201dd6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.lma.eg.db/post-link.sh b/recipes/bioconductor-mesh.lma.eg.db/post-link.sh index 5745becf14692..01ae95873acc4 100644 --- a/recipes/bioconductor-mesh.lma.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.lma.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Lma.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Lma.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.lma.eg.db/bioconductor-mesh.lma.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.lma.eg.db/bioconductor-mesh.lma.eg.db_1.12.0_src_all.tar.gz" ) MD5="721401ba48afbb7607bbeed319201dd6" diff --git a/recipes/bioconductor-mesh.mdo.eg.db/meta.yaml b/recipes/bioconductor-mesh.mdo.eg.db/meta.yaml index 5ee59098226e9..31d970ef3ffb9 100644 --- a/recipes/bioconductor-mesh.mdo.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.mdo.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 56deff651c2d15ec96a0afc329ab6bb1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.mdo.eg.db/post-link.sh b/recipes/bioconductor-mesh.mdo.eg.db/post-link.sh index 28ac959f35f28..5cd80ecbb15c2 100644 --- a/recipes/bioconductor-mesh.mdo.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.mdo.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Mdo.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Mdo.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.mdo.eg.db/bioconductor-mesh.mdo.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.mdo.eg.db/bioconductor-mesh.mdo.eg.db_1.12.0_src_all.tar.gz" ) MD5="56deff651c2d15ec96a0afc329ab6bb1" diff --git a/recipes/bioconductor-mesh.mes.eg.db/meta.yaml b/recipes/bioconductor-mesh.mes.eg.db/meta.yaml index 562c38a788bec..d4d403634996a 100644 --- a/recipes/bioconductor-mesh.mes.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.mes.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4c65242716fb7aa5d5968a2d91307530 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.mes.eg.db/post-link.sh b/recipes/bioconductor-mesh.mes.eg.db/post-link.sh index 506320d5e1439..ba72a546146f3 100644 --- a/recipes/bioconductor-mesh.mes.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.mes.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Mes.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Mes.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.mes.eg.db/bioconductor-mesh.mes.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.mes.eg.db/bioconductor-mesh.mes.eg.db_1.12.0_src_all.tar.gz" ) MD5="4c65242716fb7aa5d5968a2d91307530" diff --git a/recipes/bioconductor-mesh.mga.eg.db/meta.yaml b/recipes/bioconductor-mesh.mga.eg.db/meta.yaml index 99ac004e755f6..d41cc8672ec33 100644 --- a/recipes/bioconductor-mesh.mga.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.mga.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 659315d8b301c67a59412bd4f0727f1b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.mga.eg.db/post-link.sh b/recipes/bioconductor-mesh.mga.eg.db/post-link.sh index cfd15b3b6a3aa..b3a562dffa337 100644 --- a/recipes/bioconductor-mesh.mga.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.mga.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Mga.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Mga.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.mga.eg.db/bioconductor-mesh.mga.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.mga.eg.db/bioconductor-mesh.mga.eg.db_1.12.0_src_all.tar.gz" ) MD5="659315d8b301c67a59412bd4f0727f1b" diff --git a/recipes/bioconductor-mesh.miy.eg.db/meta.yaml b/recipes/bioconductor-mesh.miy.eg.db/meta.yaml index a2534683b718c..503a65b4213ba 100644 --- a/recipes/bioconductor-mesh.miy.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.miy.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 522b6f0a257ff520c419c8d22969502c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.miy.eg.db/post-link.sh b/recipes/bioconductor-mesh.miy.eg.db/post-link.sh index 3c5c032c13eba..ade3aa03206e8 100644 --- a/recipes/bioconductor-mesh.miy.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.miy.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Miy.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Miy.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.miy.eg.db/bioconductor-mesh.miy.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.miy.eg.db/bioconductor-mesh.miy.eg.db_1.12.0_src_all.tar.gz" ) MD5="522b6f0a257ff520c419c8d22969502c" diff --git a/recipes/bioconductor-mesh.mml.eg.db/meta.yaml b/recipes/bioconductor-mesh.mml.eg.db/meta.yaml index 3b188a2ddfa04..03d827b175f33 100644 --- a/recipes/bioconductor-mesh.mml.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.mml.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a7cd43e9541c7b836118358b9165cbf5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.mml.eg.db/post-link.sh b/recipes/bioconductor-mesh.mml.eg.db/post-link.sh index ad9d21d3939fe..d2e3186e46bab 100644 --- a/recipes/bioconductor-mesh.mml.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.mml.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Mml.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Mml.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.mml.eg.db/bioconductor-mesh.mml.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.mml.eg.db/bioconductor-mesh.mml.eg.db_1.12.0_src_all.tar.gz" ) MD5="a7cd43e9541c7b836118358b9165cbf5" diff --git a/recipes/bioconductor-mesh.mmu.eg.db/meta.yaml b/recipes/bioconductor-mesh.mmu.eg.db/meta.yaml index 2385d27741fe5..13d0806b88af7 100644 --- a/recipes/bioconductor-mesh.mmu.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.mmu.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6a74e15d6f326ea1a59a9ac8dc40a35f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.mmu.eg.db/post-link.sh b/recipes/bioconductor-mesh.mmu.eg.db/post-link.sh index c9f1682a39912..4a8ea269ba520 100644 --- a/recipes/bioconductor-mesh.mmu.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.mmu.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Mmu.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Mmu.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.mmu.eg.db/bioconductor-mesh.mmu.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.mmu.eg.db/bioconductor-mesh.mmu.eg.db_1.12.0_src_all.tar.gz" ) MD5="6a74e15d6f326ea1a59a9ac8dc40a35f" diff --git a/recipes/bioconductor-mesh.mtr.eg.db/meta.yaml b/recipes/bioconductor-mesh.mtr.eg.db/meta.yaml index 5608cb449b8f3..4fe5de87f2281 100644 --- a/recipes/bioconductor-mesh.mtr.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.mtr.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: daf79961fe978d2b48c13dc3a3ba6725 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.mtr.eg.db/post-link.sh b/recipes/bioconductor-mesh.mtr.eg.db/post-link.sh index 94fec3430d0a9..3dc022691f2f9 100644 --- a/recipes/bioconductor-mesh.mtr.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.mtr.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Mtr.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Mtr.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.mtr.eg.db/bioconductor-mesh.mtr.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.mtr.eg.db/bioconductor-mesh.mtr.eg.db_1.12.0_src_all.tar.gz" ) MD5="daf79961fe978d2b48c13dc3a3ba6725" diff --git a/recipes/bioconductor-mesh.nle.eg.db/meta.yaml b/recipes/bioconductor-mesh.nle.eg.db/meta.yaml index 149ee06f76436..723d9063de904 100644 --- a/recipes/bioconductor-mesh.nle.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.nle.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 669f9d933f499d2ef95d14c1e35e6d60 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.nle.eg.db/post-link.sh b/recipes/bioconductor-mesh.nle.eg.db/post-link.sh index 0f56e73b5b9bc..b1f9144a6d532 100644 --- a/recipes/bioconductor-mesh.nle.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.nle.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Nle.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Nle.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.nle.eg.db/bioconductor-mesh.nle.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.nle.eg.db/bioconductor-mesh.nle.eg.db_1.12.0_src_all.tar.gz" ) MD5="669f9d933f499d2ef95d14c1e35e6d60" diff --git a/recipes/bioconductor-mesh.oan.eg.db/meta.yaml b/recipes/bioconductor-mesh.oan.eg.db/meta.yaml index 7ce69c9f444e4..9c04840c6e6eb 100644 --- a/recipes/bioconductor-mesh.oan.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.oan.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ecec08fc3217a3115b90b7ee25542181 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.oan.eg.db/post-link.sh b/recipes/bioconductor-mesh.oan.eg.db/post-link.sh index 47030913c9da5..e43f1fa055eeb 100644 --- a/recipes/bioconductor-mesh.oan.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.oan.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Oan.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Oan.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.oan.eg.db/bioconductor-mesh.oan.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.oan.eg.db/bioconductor-mesh.oan.eg.db_1.12.0_src_all.tar.gz" ) MD5="ecec08fc3217a3115b90b7ee25542181" diff --git a/recipes/bioconductor-mesh.ocu.eg.db/meta.yaml b/recipes/bioconductor-mesh.ocu.eg.db/meta.yaml index d59b5a5ecf1d4..7a8516f1f8c6e 100644 --- a/recipes/bioconductor-mesh.ocu.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.ocu.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dde3bb54635e7d29ce36442f765a4a4e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.ocu.eg.db/post-link.sh b/recipes/bioconductor-mesh.ocu.eg.db/post-link.sh index 4f263f58b5746..f799b80689962 100644 --- a/recipes/bioconductor-mesh.ocu.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.ocu.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Ocu.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Ocu.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.ocu.eg.db/bioconductor-mesh.ocu.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.ocu.eg.db/bioconductor-mesh.ocu.eg.db_1.12.0_src_all.tar.gz" ) MD5="dde3bb54635e7d29ce36442f765a4a4e" diff --git a/recipes/bioconductor-mesh.oni.eg.db/meta.yaml b/recipes/bioconductor-mesh.oni.eg.db/meta.yaml index 2e8df1d3531fd..d705ef2b11c71 100644 --- a/recipes/bioconductor-mesh.oni.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.oni.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1e60d2f6c0db960a61acac0edc115165 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.oni.eg.db/post-link.sh b/recipes/bioconductor-mesh.oni.eg.db/post-link.sh index 13a88b38ae19f..8e8f6d694fb3f 100644 --- a/recipes/bioconductor-mesh.oni.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.oni.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Oni.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Oni.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.oni.eg.db/bioconductor-mesh.oni.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.oni.eg.db/bioconductor-mesh.oni.eg.db_1.12.0_src_all.tar.gz" ) MD5="1e60d2f6c0db960a61acac0edc115165" diff --git a/recipes/bioconductor-mesh.osa.eg.db/meta.yaml b/recipes/bioconductor-mesh.osa.eg.db/meta.yaml index 7f2d8127d20df..8afc54d0a79e9 100644 --- a/recipes/bioconductor-mesh.osa.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.osa.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8b4f81cd17b23186cedd32cc171a0317 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.osa.eg.db/post-link.sh b/recipes/bioconductor-mesh.osa.eg.db/post-link.sh index 7872ccc3324bf..7126550b96ba1 100644 --- a/recipes/bioconductor-mesh.osa.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.osa.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Osa.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Osa.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.osa.eg.db/bioconductor-mesh.osa.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.osa.eg.db/bioconductor-mesh.osa.eg.db_1.12.0_src_all.tar.gz" ) MD5="8b4f81cd17b23186cedd32cc171a0317" diff --git a/recipes/bioconductor-mesh.pab.eg.db/meta.yaml b/recipes/bioconductor-mesh.pab.eg.db/meta.yaml index 10e9b87641137..d3438f4d5134c 100644 --- a/recipes/bioconductor-mesh.pab.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.pab.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 05e1649d5a99c21de690b75f52217bce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.pab.eg.db/post-link.sh b/recipes/bioconductor-mesh.pab.eg.db/post-link.sh index 35fa62b1b38ec..d6413a9a121bd 100644 --- a/recipes/bioconductor-mesh.pab.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.pab.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Pab.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Pab.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.pab.eg.db/bioconductor-mesh.pab.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.pab.eg.db/bioconductor-mesh.pab.eg.db_1.12.0_src_all.tar.gz" ) MD5="05e1649d5a99c21de690b75f52217bce" diff --git a/recipes/bioconductor-mesh.pae.pao1.eg.db/meta.yaml b/recipes/bioconductor-mesh.pae.pao1.eg.db/meta.yaml index ea1e5093c71e3..72535c814678e 100644 --- a/recipes/bioconductor-mesh.pae.pao1.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.pae.pao1.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aba001fa355b5dcfc3aee1fbd99a2db5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.pae.pao1.eg.db/post-link.sh b/recipes/bioconductor-mesh.pae.pao1.eg.db/post-link.sh index db096db973d97..ab0b7fa8ea965 100644 --- a/recipes/bioconductor-mesh.pae.pao1.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.pae.pao1.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Pae.PAO1.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Pae.PAO1.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.pae.pao1.eg.db/bioconductor-mesh.pae.pao1.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.pae.pao1.eg.db/bioconductor-mesh.pae.pao1.eg.db_1.12.0_src_all.tar.gz" ) MD5="aba001fa355b5dcfc3aee1fbd99a2db5" diff --git a/recipes/bioconductor-mesh.pcr.db/meta.yaml b/recipes/bioconductor-mesh.pcr.db/meta.yaml index fe163ab3ffb00..094ebb2ca3215 100644 --- a/recipes/bioconductor-mesh.pcr.db/meta.yaml +++ b/recipes/bioconductor-mesh.pcr.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4926de52ba0a431d445b50c8e0d9e2aa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.pcr.db/post-link.sh b/recipes/bioconductor-mesh.pcr.db/post-link.sh index 4b0500e2de4a5..044628bf4a93a 100644 --- a/recipes/bioconductor-mesh.pcr.db/post-link.sh +++ b/recipes/bioconductor-mesh.pcr.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.PCR.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.PCR.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.pcr.db/bioconductor-mesh.pcr.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.pcr.db/bioconductor-mesh.pcr.db_1.12.0_src_all.tar.gz" ) MD5="4926de52ba0a431d445b50c8e0d9e2aa" diff --git a/recipes/bioconductor-mesh.pfa.3d7.eg.db/meta.yaml b/recipes/bioconductor-mesh.pfa.3d7.eg.db/meta.yaml index c1bc5289a385b..7296270e4ac3d 100644 --- a/recipes/bioconductor-mesh.pfa.3d7.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.pfa.3d7.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d961776f4f0327b3225501536f72c5c1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.pfa.3d7.eg.db/post-link.sh b/recipes/bioconductor-mesh.pfa.3d7.eg.db/post-link.sh index 2c19bcedbca2c..f8d3b1d0da6a3 100644 --- a/recipes/bioconductor-mesh.pfa.3d7.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.pfa.3d7.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Pfa.3D7.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Pfa.3D7.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.pfa.3d7.eg.db/bioconductor-mesh.pfa.3d7.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.pfa.3d7.eg.db/bioconductor-mesh.pfa.3d7.eg.db_1.12.0_src_all.tar.gz" ) MD5="d961776f4f0327b3225501536f72c5c1" diff --git a/recipes/bioconductor-mesh.pto.eg.db/meta.yaml b/recipes/bioconductor-mesh.pto.eg.db/meta.yaml index 3fbad320dc510..59023a23e498d 100644 --- a/recipes/bioconductor-mesh.pto.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.pto.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1fe6e6cfae85bc91012c4c2f412574f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.pto.eg.db/post-link.sh b/recipes/bioconductor-mesh.pto.eg.db/post-link.sh index 88b07b7892a6f..61c14e51476cd 100644 --- a/recipes/bioconductor-mesh.pto.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.pto.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Pto.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Pto.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.pto.eg.db/bioconductor-mesh.pto.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.pto.eg.db/bioconductor-mesh.pto.eg.db_1.12.0_src_all.tar.gz" ) MD5="f1fe6e6cfae85bc91012c4c2f412574f" diff --git a/recipes/bioconductor-mesh.ptr.eg.db/meta.yaml b/recipes/bioconductor-mesh.ptr.eg.db/meta.yaml index b654e823386fb..3d87a5acdd540 100644 --- a/recipes/bioconductor-mesh.ptr.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.ptr.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 89378cdf2ec173927c6b13ff3a7773be build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.ptr.eg.db/post-link.sh b/recipes/bioconductor-mesh.ptr.eg.db/post-link.sh index 29ee7414cf4f9..2943dad012857 100644 --- a/recipes/bioconductor-mesh.ptr.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.ptr.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Ptr.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Ptr.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.ptr.eg.db/bioconductor-mesh.ptr.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.ptr.eg.db/bioconductor-mesh.ptr.eg.db_1.12.0_src_all.tar.gz" ) MD5="89378cdf2ec173927c6b13ff3a7773be" diff --git a/recipes/bioconductor-mesh.rno.eg.db/meta.yaml b/recipes/bioconductor-mesh.rno.eg.db/meta.yaml index ff9e6f5a06d6d..87b57e3657794 100644 --- a/recipes/bioconductor-mesh.rno.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.rno.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1af7cf2392bf2f1f12dd24018abedd0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.rno.eg.db/post-link.sh b/recipes/bioconductor-mesh.rno.eg.db/post-link.sh index e1587b6d024bd..4760da3eb5c88 100644 --- a/recipes/bioconductor-mesh.rno.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.rno.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Rno.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Rno.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.rno.eg.db/bioconductor-mesh.rno.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.rno.eg.db/bioconductor-mesh.rno.eg.db_1.12.0_src_all.tar.gz" ) MD5="f1af7cf2392bf2f1f12dd24018abedd0" diff --git a/recipes/bioconductor-mesh.sce.s288c.eg.db/meta.yaml b/recipes/bioconductor-mesh.sce.s288c.eg.db/meta.yaml index d4f27f4d9072c..17428ce6f6b11 100644 --- a/recipes/bioconductor-mesh.sce.s288c.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.sce.s288c.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 04c21f9e0331a3ac3daac4b6157df5bb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.sce.s288c.eg.db/post-link.sh b/recipes/bioconductor-mesh.sce.s288c.eg.db/post-link.sh index c5baa80bd66cf..25200bc2109a6 100644 --- a/recipes/bioconductor-mesh.sce.s288c.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.sce.s288c.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Sce.S288c.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Sce.S288c.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.sce.s288c.eg.db/bioconductor-mesh.sce.s288c.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.sce.s288c.eg.db/bioconductor-mesh.sce.s288c.eg.db_1.12.0_src_all.tar.gz" ) MD5="04c21f9e0331a3ac3daac4b6157df5bb" diff --git a/recipes/bioconductor-mesh.sco.a32.eg.db/meta.yaml b/recipes/bioconductor-mesh.sco.a32.eg.db/meta.yaml index 2f38be2f28cc3..57ceaa1bb8061 100644 --- a/recipes/bioconductor-mesh.sco.a32.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.sco.a32.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fb3a9481651a8c21f0a019c83eee2de2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.sco.a32.eg.db/post-link.sh b/recipes/bioconductor-mesh.sco.a32.eg.db/post-link.sh index 1fe3af74a22ec..9a2be6bd95283 100644 --- a/recipes/bioconductor-mesh.sco.a32.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.sco.a32.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Sco.A32.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Sco.A32.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.sco.a32.eg.db/bioconductor-mesh.sco.a32.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.sco.a32.eg.db/bioconductor-mesh.sco.a32.eg.db_1.12.0_src_all.tar.gz" ) MD5="fb3a9481651a8c21f0a019c83eee2de2" diff --git a/recipes/bioconductor-mesh.sil.eg.db/meta.yaml b/recipes/bioconductor-mesh.sil.eg.db/meta.yaml index 984ac0f563b87..33060d456ec99 100644 --- a/recipes/bioconductor-mesh.sil.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.sil.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd31b4ca3919da597e1f49ef6e94c81f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.sil.eg.db/post-link.sh b/recipes/bioconductor-mesh.sil.eg.db/post-link.sh index f72c2ee663a7b..051d21e176a31 100644 --- a/recipes/bioconductor-mesh.sil.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.sil.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Sil.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Sil.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.sil.eg.db/bioconductor-mesh.sil.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.sil.eg.db/bioconductor-mesh.sil.eg.db_1.12.0_src_all.tar.gz" ) MD5="fd31b4ca3919da597e1f49ef6e94c81f" diff --git a/recipes/bioconductor-mesh.spu.eg.db/meta.yaml b/recipes/bioconductor-mesh.spu.eg.db/meta.yaml index 5aff2dd668b60..8f084e3e7dd59 100644 --- a/recipes/bioconductor-mesh.spu.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.spu.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0c4afe697c0807f98c7654a380165fb6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.spu.eg.db/post-link.sh b/recipes/bioconductor-mesh.spu.eg.db/post-link.sh index 2aa1a53344c30..7982fcb084ac5 100644 --- a/recipes/bioconductor-mesh.spu.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.spu.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Spu.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Spu.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.spu.eg.db/bioconductor-mesh.spu.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.spu.eg.db/bioconductor-mesh.spu.eg.db_1.12.0_src_all.tar.gz" ) MD5="0c4afe697c0807f98c7654a380165fb6" diff --git a/recipes/bioconductor-mesh.ssc.eg.db/meta.yaml b/recipes/bioconductor-mesh.ssc.eg.db/meta.yaml index cb08af1f8a32a..f8a029c9d7efd 100644 --- a/recipes/bioconductor-mesh.ssc.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.ssc.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c402e9dffa1060d299977ecf77c95e31 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.ssc.eg.db/post-link.sh b/recipes/bioconductor-mesh.ssc.eg.db/post-link.sh index db5277aabd72f..1f6ffa0427eb2 100644 --- a/recipes/bioconductor-mesh.ssc.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.ssc.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Ssc.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Ssc.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.ssc.eg.db/bioconductor-mesh.ssc.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.ssc.eg.db/bioconductor-mesh.ssc.eg.db_1.12.0_src_all.tar.gz" ) MD5="c402e9dffa1060d299977ecf77c95e31" diff --git a/recipes/bioconductor-mesh.syn.eg.db/meta.yaml b/recipes/bioconductor-mesh.syn.eg.db/meta.yaml index cfccfcd92cc66..83c6a1494b13d 100644 --- a/recipes/bioconductor-mesh.syn.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.syn.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: be1717480eabc1ace26196d2608c39f5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.syn.eg.db/post-link.sh b/recipes/bioconductor-mesh.syn.eg.db/post-link.sh index 5bbf6307f3ea5..73df01879f72c 100644 --- a/recipes/bioconductor-mesh.syn.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.syn.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Syn.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Syn.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.syn.eg.db/bioconductor-mesh.syn.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.syn.eg.db/bioconductor-mesh.syn.eg.db_1.12.0_src_all.tar.gz" ) MD5="be1717480eabc1ace26196d2608c39f5" diff --git a/recipes/bioconductor-mesh.tbr.9274.eg.db/meta.yaml b/recipes/bioconductor-mesh.tbr.9274.eg.db/meta.yaml index 4549da4e030df..c3eb1f9fb822e 100644 --- a/recipes/bioconductor-mesh.tbr.9274.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.tbr.9274.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0736c3869de19755b03c7b9849c560f1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.tbr.9274.eg.db/post-link.sh b/recipes/bioconductor-mesh.tbr.9274.eg.db/post-link.sh index 6f38e91639c4c..7139458f83373 100644 --- a/recipes/bioconductor-mesh.tbr.9274.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.tbr.9274.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Tbr.9274.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Tbr.9274.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.tbr.9274.eg.db/bioconductor-mesh.tbr.9274.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.tbr.9274.eg.db/bioconductor-mesh.tbr.9274.eg.db_1.12.0_src_all.tar.gz" ) MD5="0736c3869de19755b03c7b9849c560f1" diff --git a/recipes/bioconductor-mesh.tgo.me49.eg.db/meta.yaml b/recipes/bioconductor-mesh.tgo.me49.eg.db/meta.yaml index 96c6f7a598316..d634d4d92815e 100644 --- a/recipes/bioconductor-mesh.tgo.me49.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.tgo.me49.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ef6c6bb69bb039dc3174a3a02e12156f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.tgo.me49.eg.db/post-link.sh b/recipes/bioconductor-mesh.tgo.me49.eg.db/post-link.sh index 2785fcb4012e9..3f762282c030a 100644 --- a/recipes/bioconductor-mesh.tgo.me49.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.tgo.me49.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Tgo.ME49.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Tgo.ME49.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.tgo.me49.eg.db/bioconductor-mesh.tgo.me49.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.tgo.me49.eg.db/bioconductor-mesh.tgo.me49.eg.db_1.12.0_src_all.tar.gz" ) MD5="ef6c6bb69bb039dc3174a3a02e12156f" diff --git a/recipes/bioconductor-mesh.tgu.eg.db/meta.yaml b/recipes/bioconductor-mesh.tgu.eg.db/meta.yaml index 93c83b21135be..5c57bfac67d08 100644 --- a/recipes/bioconductor-mesh.tgu.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.tgu.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 632ef7433017f0e48ca67da3c49f7939 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.tgu.eg.db/post-link.sh b/recipes/bioconductor-mesh.tgu.eg.db/post-link.sh index 26715b73841d7..4031d28bf650c 100644 --- a/recipes/bioconductor-mesh.tgu.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.tgu.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Tgu.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Tgu.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.tgu.eg.db/bioconductor-mesh.tgu.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.tgu.eg.db/bioconductor-mesh.tgu.eg.db_1.12.0_src_all.tar.gz" ) MD5="632ef7433017f0e48ca67da3c49f7939" diff --git a/recipes/bioconductor-mesh.vvi.eg.db/meta.yaml b/recipes/bioconductor-mesh.vvi.eg.db/meta.yaml index 2091020e998b5..c2e99ce8e222e 100644 --- a/recipes/bioconductor-mesh.vvi.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.vvi.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4d24b9a2d581e5d5afc86f939db963b1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.vvi.eg.db/post-link.sh b/recipes/bioconductor-mesh.vvi.eg.db/post-link.sh index 5c0e4a7c72367..32819c8a0e485 100644 --- a/recipes/bioconductor-mesh.vvi.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.vvi.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Vvi.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Vvi.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.vvi.eg.db/bioconductor-mesh.vvi.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.vvi.eg.db/bioconductor-mesh.vvi.eg.db_1.12.0_src_all.tar.gz" ) MD5="4d24b9a2d581e5d5afc86f939db963b1" diff --git a/recipes/bioconductor-mesh.xla.eg.db/meta.yaml b/recipes/bioconductor-mesh.xla.eg.db/meta.yaml index 9a616b0065194..588bcaaffc32c 100644 --- a/recipes/bioconductor-mesh.xla.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.xla.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c2ca106352ddfe896e2079037a67d0ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.xla.eg.db/post-link.sh b/recipes/bioconductor-mesh.xla.eg.db/post-link.sh index 713ebd583909c..ed438bb7649eb 100644 --- a/recipes/bioconductor-mesh.xla.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.xla.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Xla.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Xla.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.xla.eg.db/bioconductor-mesh.xla.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.xla.eg.db/bioconductor-mesh.xla.eg.db_1.12.0_src_all.tar.gz" ) MD5="c2ca106352ddfe896e2079037a67d0ee" diff --git a/recipes/bioconductor-mesh.xtr.eg.db/meta.yaml b/recipes/bioconductor-mesh.xtr.eg.db/meta.yaml index fd9ec72e35bb0..a82eb0602effe 100644 --- a/recipes/bioconductor-mesh.xtr.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.xtr.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aec288e916f0702d95b0d113d06c1a14 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.xtr.eg.db/post-link.sh b/recipes/bioconductor-mesh.xtr.eg.db/post-link.sh index 784de683023ce..77a499e6c9b9c 100644 --- a/recipes/bioconductor-mesh.xtr.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.xtr.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Xtr.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Xtr.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.xtr.eg.db/bioconductor-mesh.xtr.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.xtr.eg.db/bioconductor-mesh.xtr.eg.db_1.12.0_src_all.tar.gz" ) MD5="aec288e916f0702d95b0d113d06c1a14" diff --git a/recipes/bioconductor-mesh.zma.eg.db/meta.yaml b/recipes/bioconductor-mesh.zma.eg.db/meta.yaml index 9550e0b7f363b..1f4945e903f5d 100644 --- a/recipes/bioconductor-mesh.zma.eg.db/meta.yaml +++ b/recipes/bioconductor-mesh.zma.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6fae1bfade2e7144d9be54d50725cd89 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mesh.zma.eg.db/post-link.sh b/recipes/bioconductor-mesh.zma.eg.db/post-link.sh index f806c68302872..abd684b2ebded 100644 --- a/recipes/bioconductor-mesh.zma.eg.db/post-link.sh +++ b/recipes/bioconductor-mesh.zma.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/MeSH.Zma.eg.db_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/MeSH.Zma.eg.db_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mesh.zma.eg.db/bioconductor-mesh.zma.eg.db_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mesh.zma.eg.db/bioconductor-mesh.zma.eg.db_1.12.0_src_all.tar.gz" ) MD5="6fae1bfade2e7144d9be54d50725cd89" diff --git a/recipes/bioconductor-meshdbi/meta.yaml b/recipes/bioconductor-meshdbi/meta.yaml index 183adf24c83fa..67c5cf7c73ba2 100644 --- a/recipes/bioconductor-meshdbi/meta.yaml +++ b/recipes/bioconductor-meshdbi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8e5ddfc622ed4f0ea2380222996695f1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-meshes/meta.yaml b/recipes/bioconductor-meshes/meta.yaml index 5eca952c930fc..b046d3114f511 100644 --- a/recipes/bioconductor-meshes/meta.yaml +++ b/recipes/bioconductor-meshes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fee72009cb9fd04feef89fe26f569dc7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-meshr/meta.yaml b/recipes/bioconductor-meshr/meta.yaml index bd9b3ca7c9884..45bbe42e8d6f2 100644 --- a/recipes/bioconductor-meshr/meta.yaml +++ b/recipes/bioconductor-meshr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 14b9bd13f8dedc691b578adc0be88b04 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-messina/meta.yaml b/recipes/bioconductor-messina/meta.yaml index 8eb765b17e52f..a96609e40c3b3 100644 --- a/recipes/bioconductor-messina/meta.yaml +++ b/recipes/bioconductor-messina/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bfd3714601dfff75a4dd9be6c8a7a5d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metaarray/meta.yaml b/recipes/bioconductor-metaarray/meta.yaml index cbca6b7bcfad6..283da754a71fa 100644 --- a/recipes/bioconductor-metaarray/meta.yaml +++ b/recipes/bioconductor-metaarray/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 083da57aabf27d356e0de1b8cbab1320 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metab/meta.yaml b/recipes/bioconductor-metab/meta.yaml index e8d4e48522fa7..c8fe5f86589ea 100644 --- a/recipes/bioconductor-metab/meta.yaml +++ b/recipes/bioconductor-metab/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 72560743a678a57eb3a634be599a72fd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metabomxtr/meta.yaml b/recipes/bioconductor-metabomxtr/meta.yaml index a9e220b01b017..e7f11401df7af 100644 --- a/recipes/bioconductor-metabomxtr/meta.yaml +++ b/recipes/bioconductor-metabomxtr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9d9d01919c3c1a6862df51f84037f152 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metabosignal/meta.yaml b/recipes/bioconductor-metabosignal/meta.yaml index d5c6bb87496a0..b38e43141aae9 100644 --- a/recipes/bioconductor-metabosignal/meta.yaml +++ b/recipes/bioconductor-metabosignal/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0871a575a25e669e1419961747e5ad3f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,7 +22,7 @@ requirements: host: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-biomart >=2.40.0,<2.41.0' - - 'bioconductor-ensdb.hsapiens.v75 >=3.0.0,<3.1.0' + - 'bioconductor-ensdb.hsapiens.v75 >=2.99.0,<2.100.0' - 'bioconductor-hpar >=1.26.0,<1.27.0' - 'bioconductor-kegggraph >=1.44.0,<1.45.0' - 'bioconductor-keggrest >=1.24.0,<1.25.0' @@ -35,7 +35,7 @@ requirements: run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-biomart >=2.40.0,<2.41.0' - - 'bioconductor-ensdb.hsapiens.v75 >=3.0.0,<3.1.0' + - 'bioconductor-ensdb.hsapiens.v75 >=2.99.0,<2.100.0' - 'bioconductor-hpar >=1.26.0,<1.27.0' - 'bioconductor-kegggraph >=1.44.0,<1.45.0' - 'bioconductor-keggrest >=1.24.0,<1.25.0' diff --git a/recipes/bioconductor-metacca/meta.yaml b/recipes/bioconductor-metacca/meta.yaml index ec71bdc8129f4..232cf4e22ce8f 100644 --- a/recipes/bioconductor-metacca/meta.yaml +++ b/recipes/bioconductor-metacca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 02cd0b7e8ba5bf167a3313dd8397e03b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metacyto/meta.yaml b/recipes/bioconductor-metacyto/meta.yaml index a54fca9a4d698..5728e9809364a 100644 --- a/recipes/bioconductor-metacyto/meta.yaml +++ b/recipes/bioconductor-metacyto/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 38315a7bc63f03a7f2fdf63a04671134 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metagene/meta.yaml b/recipes/bioconductor-metagene/meta.yaml index d07aadd3cbeb2..3fe7deb615c07 100644 --- a/recipes/bioconductor-metagene/meta.yaml +++ b/recipes/bioconductor-metagene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dad27037a0cf662f0db8b1ebbe83f3c8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,7 +22,7 @@ requirements: host: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' - 'bioconductor-dbchip >=1.28.0,<1.29.0' - - 'bioconductor-ensdb.hsapiens.v86 >=3.0.0,<3.1.0' + - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0' - 'bioconductor-ensembldb >=2.8.0,<2.9.0' - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' @@ -44,7 +44,7 @@ requirements: run: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' - 'bioconductor-dbchip >=1.28.0,<1.29.0' - - 'bioconductor-ensdb.hsapiens.v86 >=3.0.0,<3.1.0' + - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0' - 'bioconductor-ensembldb >=2.8.0,<2.9.0' - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' diff --git a/recipes/bioconductor-metagene2/meta.yaml b/recipes/bioconductor-metagene2/meta.yaml index cf2c056050eca..caaa371aa76e4 100644 --- a/recipes/bioconductor-metagene2/meta.yaml +++ b/recipes/bioconductor-metagene2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 381dbccb0c6a7b747e5261115f1970cd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metagenomefeatures/meta.yaml b/recipes/bioconductor-metagenomefeatures/meta.yaml index c13cdb6b77f97..86f2bce42e34f 100644 --- a/recipes/bioconductor-metagenomefeatures/meta.yaml +++ b/recipes/bioconductor-metagenomefeatures/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1c3987396555e229b181613b022514d2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metagenomeseq/meta.yaml b/recipes/bioconductor-metagenomeseq/meta.yaml index 7bc019fe663ac..3efd8bcf1a637 100644 --- a/recipes/bioconductor-metagenomeseq/meta.yaml +++ b/recipes/bioconductor-metagenomeseq/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.26.0" %} +{% set version = "1.26.2" %} {% set name = "metagenomeSeq" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: bf7742b3561fbf9fd63ffc76ba8388f5 + md5: d1d80fac36e3c8e9063e40766910fccc build: number: 0 rpaths: diff --git a/recipes/bioconductor-metagxbreast/meta.yaml b/recipes/bioconductor-metagxbreast/meta.yaml index 19a2d06fad3ce..4d7a0358a94f0 100644 --- a/recipes/bioconductor-metagxbreast/meta.yaml +++ b/recipes/bioconductor-metagxbreast/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ebc1b88b0cbc809a6ee615a618ae9e87 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metagxbreast/post-link.sh b/recipes/bioconductor-metagxbreast/post-link.sh index f6c7ff84acad7..027b71fdb2fa3 100644 --- a/recipes/bioconductor-metagxbreast/post-link.sh +++ b/recipes/bioconductor-metagxbreast/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MetaGxBreast_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/MetaGxBreast_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-metagxbreast/bioconductor-metagxbreast_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-metagxbreast/bioconductor-metagxbreast_1.4.0_src_all.tar.gz" ) MD5="ebc1b88b0cbc809a6ee615a618ae9e87" diff --git a/recipes/bioconductor-metagxovarian/meta.yaml b/recipes/bioconductor-metagxovarian/meta.yaml index fb10d83e532bc..91e8072990063 100644 --- a/recipes/bioconductor-metagxovarian/meta.yaml +++ b/recipes/bioconductor-metagxovarian/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 19c08da41e05075e9498397490027658 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metagxovarian/post-link.sh b/recipes/bioconductor-metagxovarian/post-link.sh index 20ef91fc7c699..3001afa49c188 100644 --- a/recipes/bioconductor-metagxovarian/post-link.sh +++ b/recipes/bioconductor-metagxovarian/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MetaGxOvarian_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/MetaGxOvarian_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-metagxovarian/bioconductor-metagxovarian_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-metagxovarian/bioconductor-metagxovarian_1.4.0_src_all.tar.gz" ) MD5="19c08da41e05075e9498397490027658" diff --git a/recipes/bioconductor-metagxpancreas/meta.yaml b/recipes/bioconductor-metagxpancreas/meta.yaml index db2ef0b18a07b..18136c823694e 100644 --- a/recipes/bioconductor-metagxpancreas/meta.yaml +++ b/recipes/bioconductor-metagxpancreas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8c87608964940fa1f28b5713c6588414 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metagxpancreas/post-link.sh b/recipes/bioconductor-metagxpancreas/post-link.sh index aab54d1b4c847..89c0591dd68ab 100644 --- a/recipes/bioconductor-metagxpancreas/post-link.sh +++ b/recipes/bioconductor-metagxpancreas/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MetaGxPancreas_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/MetaGxPancreas_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-metagxpancreas/bioconductor-metagxpancreas_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-metagxpancreas/bioconductor-metagxpancreas_1.4.0_src_all.tar.gz" ) MD5="8c87608964940fa1f28b5713c6588414" diff --git a/recipes/bioconductor-metahdep/meta.yaml b/recipes/bioconductor-metahdep/meta.yaml index 4199040068496..a9014e948e54e 100644 --- a/recipes/bioconductor-metahdep/meta.yaml +++ b/recipes/bioconductor-metahdep/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 53978153bca3e1c0eeb53c335c52ece8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metams/meta.yaml b/recipes/bioconductor-metams/meta.yaml index a43456e7a003d..44d0e91fec452 100644 --- a/recipes/bioconductor-metams/meta.yaml +++ b/recipes/bioconductor-metams/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d8fe444714c4b37bd55b105fb733dbe6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metamsdata/meta.yaml b/recipes/bioconductor-metamsdata/meta.yaml index 10ab77671c2fe..84f1f2b637b93 100644 --- a/recipes/bioconductor-metamsdata/meta.yaml +++ b/recipes/bioconductor-metamsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 60703c7f827a3e2f1ca0abe3afa39d5b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metamsdata/post-link.sh b/recipes/bioconductor-metamsdata/post-link.sh index 6ba64fbab3332..6cc6de04ffa34 100644 --- a/recipes/bioconductor-metamsdata/post-link.sh +++ b/recipes/bioconductor-metamsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/metaMSdata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/metaMSdata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-metamsdata/bioconductor-metamsdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-metamsdata/bioconductor-metamsdata_1.20.0_src_all.tar.gz" ) MD5="60703c7f827a3e2f1ca0abe3afa39d5b" diff --git a/recipes/bioconductor-metaneighbor/meta.yaml b/recipes/bioconductor-metaneighbor/meta.yaml index a9ad215b663fe..bd999cf27effe 100644 --- a/recipes/bioconductor-metaneighbor/meta.yaml +++ b/recipes/bioconductor-metaneighbor/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a56fc917c62d35882e3cda1aa7132759 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metaseq/meta.yaml b/recipes/bioconductor-metaseq/meta.yaml index 23d0a46242bac..7240c07556a8b 100644 --- a/recipes/bioconductor-metaseq/meta.yaml +++ b/recipes/bioconductor-metaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9849976f5f3130155bcc317d002c50a6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metaseqr/meta.yaml b/recipes/bioconductor-metaseqr/meta.yaml index dbefe39037eaa..6d3944b714d62 100644 --- a/recipes/bioconductor-metaseqr/meta.yaml +++ b/recipes/bioconductor-metaseqr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c6754c642aa149667090c8b30c96d915 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metavizr/meta.yaml b/recipes/bioconductor-metavizr/meta.yaml index a272f43fdcda4..316aa74e7cd57 100644 --- a/recipes/bioconductor-metavizr/meta.yaml +++ b/recipes/bioconductor-metavizr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 454f7b0bed4f0f936f91f8f92e6f8340 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metcirc/meta.yaml b/recipes/bioconductor-metcirc/meta.yaml index 5adf9f11fc921..052f467f348f1 100644 --- a/recipes/bioconductor-metcirc/meta.yaml +++ b/recipes/bioconductor-metcirc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e4bdd5d5bf79760717004e0e768dc6fd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methimpute/meta.yaml b/recipes/bioconductor-methimpute/meta.yaml index 00b6dd32addd0..912304f89af1a 100644 --- a/recipes/bioconductor-methimpute/meta.yaml +++ b/recipes/bioconductor-methimpute/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8c2fce21cbc830cae5b9d64526c6b569 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methinheritsim/meta.yaml b/recipes/bioconductor-methinheritsim/meta.yaml index 5f2454e5192eb..47642863344b2 100644 --- a/recipes/bioconductor-methinheritsim/meta.yaml +++ b/recipes/bioconductor-methinheritsim/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 33436a108f37f5e549a03e6612dc89d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methped/meta.yaml b/recipes/bioconductor-methped/meta.yaml index 3ad2c9a008155..bc96a7a3105bf 100644 --- a/recipes/bioconductor-methped/meta.yaml +++ b/recipes/bioconductor-methped/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 772eab7137db1e2a13f07fefcb3f0366 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methtargetedngs/meta.yaml b/recipes/bioconductor-methtargetedngs/meta.yaml index e9f68187800d0..855900ec26067 100644 --- a/recipes/bioconductor-methtargetedngs/meta.yaml +++ b/recipes/bioconductor-methtargetedngs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 560df7085ab23e24f4cbd039a2c5a7c3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -25,14 +25,12 @@ requirements: - r-gplots - r-seqinr - r-stringr - - hmmer run: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - r-base - r-gplots - r-seqinr - r-stringr - - hmmer test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-methvisual/meta.yaml b/recipes/bioconductor-methvisual/meta.yaml index 691d53d3017b6..ccc0a1261b5e1 100644 --- a/recipes/bioconductor-methvisual/meta.yaml +++ b/recipes/bioconductor-methvisual/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4b4766fc35ffaa8929472d59000dd7d1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methyanalysis/meta.yaml b/recipes/bioconductor-methyanalysis/meta.yaml index c7e8ab911b420..b63dbd4166c5c 100644 --- a/recipes/bioconductor-methyanalysis/meta.yaml +++ b/recipes/bioconductor-methyanalysis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8a5dd849c1286e568fe64cbe9ffbf339 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylaid/meta.yaml b/recipes/bioconductor-methylaid/meta.yaml index b419616b0cae9..0269ca93d158c 100644 --- a/recipes/bioconductor-methylaid/meta.yaml +++ b/recipes/bioconductor-methylaid/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e9f8c4e6f49241bfb5ff9f0464ff6470 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylaiddata/meta.yaml b/recipes/bioconductor-methylaiddata/meta.yaml index 74f4d654c038c..bd1e9f0fff0e9 100644 --- a/recipes/bioconductor-methylaiddata/meta.yaml +++ b/recipes/bioconductor-methylaiddata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2ceb994d8b7cc00b2a7ccf2e4af60579 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylaiddata/post-link.sh b/recipes/bioconductor-methylaiddata/post-link.sh index 22e077c3c870b..8821be6c0478b 100644 --- a/recipes/bioconductor-methylaiddata/post-link.sh +++ b/recipes/bioconductor-methylaiddata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MethylAidData_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/MethylAidData_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-methylaiddata/bioconductor-methylaiddata_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-methylaiddata/bioconductor-methylaiddata_1.16.0_src_all.tar.gz" ) MD5="2ceb994d8b7cc00b2a7ccf2e4af60579" diff --git a/recipes/bioconductor-methylgsa/meta.yaml b/recipes/bioconductor-methylgsa/meta.yaml index 0b21a2144b81a..0f1c82fc48566 100644 --- a/recipes/bioconductor-methylgsa/meta.yaml +++ b/recipes/bioconductor-methylgsa/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.3" %} {% set name = "methylGSA" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: ee584f38de4f84c0c2c8e73d7a7e2fec + md5: 0f7f04dc677a201d594d186ae97cb762 build: number: 0 rpaths: diff --git a/recipes/bioconductor-methylinheritance/meta.yaml b/recipes/bioconductor-methylinheritance/meta.yaml index f38ebcec1be40..28d41003ee5ed 100644 --- a/recipes/bioconductor-methylinheritance/meta.yaml +++ b/recipes/bioconductor-methylinheritance/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 37d08eb046e151e8acc867eaab557275 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylkit/meta.yaml b/recipes/bioconductor-methylkit/meta.yaml index 389a2cf9b90bc..7c6add86602e0 100644 --- a/recipes/bioconductor-methylkit/meta.yaml +++ b/recipes/bioconductor-methylkit/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a06456112ec7e30a1429d877edf44d32 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylmix/meta.yaml b/recipes/bioconductor-methylmix/meta.yaml index cd6fd08b0dc9a..561abe8499c3a 100644 --- a/recipes/bioconductor-methylmix/meta.yaml +++ b/recipes/bioconductor-methylmix/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9a3202f240fc625c7f68f8659cba3382 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylmnm/meta.yaml b/recipes/bioconductor-methylmnm/meta.yaml index 557df320095e1..9770cab6206f2 100644 --- a/recipes/bioconductor-methylmnm/meta.yaml +++ b/recipes/bioconductor-methylmnm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c6e10d64eef549b55d4447db0264f60d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylpipe/meta.yaml b/recipes/bioconductor-methylpipe/meta.yaml index 0808068aeea79..f021b987bcea5 100644 --- a/recipes/bioconductor-methylpipe/meta.yaml +++ b/recipes/bioconductor-methylpipe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e671d3ee89cf1a770cf8ac13b919c284 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylseekr/meta.yaml b/recipes/bioconductor-methylseekr/meta.yaml index 7fe88386d923b..ca28913ed32ca 100644 --- a/recipes/bioconductor-methylseekr/meta.yaml +++ b/recipes/bioconductor-methylseekr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0dcc61e0699c68e56893d16c2d2230ff build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methylumi/meta.yaml b/recipes/bioconductor-methylumi/meta.yaml index ca1c129b27fb1..a7170c01a54f9 100644 --- a/recipes/bioconductor-methylumi/meta.yaml +++ b/recipes/bioconductor-methylumi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e5e8dd104dba330867bb8b3c3a78922a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methyvim/meta.yaml b/recipes/bioconductor-methyvim/meta.yaml index 9e1befddb43df..5bf2ec7adb003 100644 --- a/recipes/bioconductor-methyvim/meta.yaml +++ b/recipes/bioconductor-methyvim/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8a62c97ee32462f27dec7a8b7f868b73 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methyvimdata/meta.yaml b/recipes/bioconductor-methyvimdata/meta.yaml index 5a23bc5fa6c40..d58a5455ae230 100644 --- a/recipes/bioconductor-methyvimdata/meta.yaml +++ b/recipes/bioconductor-methyvimdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a4c9dd38473186f1632b57e21a3ef671 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-methyvimdata/post-link.sh b/recipes/bioconductor-methyvimdata/post-link.sh index b141094c51c63..5959ca8058fff 100644 --- a/recipes/bioconductor-methyvimdata/post-link.sh +++ b/recipes/bioconductor-methyvimdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/methyvimData_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/methyvimData_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-methyvimdata/bioconductor-methyvimdata_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-methyvimdata/bioconductor-methyvimdata_1.6.0_src_all.tar.gz" ) MD5="a4c9dd38473186f1632b57e21a3ef671" diff --git a/recipes/bioconductor-metid/meta.yaml b/recipes/bioconductor-metid/meta.yaml index 85e865f72932e..90b1f69c7bf62 100644 --- a/recipes/bioconductor-metid/meta.yaml +++ b/recipes/bioconductor-metid/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 706e4dfefc5c60903c0248a9aeaf4272 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-metnet/meta.yaml b/recipes/bioconductor-metnet/meta.yaml index b8bbfb7ac045f..1208f865e178c 100644 --- a/recipes/bioconductor-metnet/meta.yaml +++ b/recipes/bioconductor-metnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d3e06137d7f3e5d6aaca1891002998cb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mfa/meta.yaml b/recipes/bioconductor-mfa/meta.yaml index 45e7c825bacf4..8ad857d1833b8 100644 --- a/recipes/bioconductor-mfa/meta.yaml +++ b/recipes/bioconductor-mfa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 314a4a4488fe8701cbe57b5d0b0879f6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mfuzz/meta.yaml b/recipes/bioconductor-mfuzz/meta.yaml index 045df805a6244..f42207b933381 100644 --- a/recipes/bioconductor-mfuzz/meta.yaml +++ b/recipes/bioconductor-mfuzz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6e1c8d489ab1865140d579655cf696f2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgfm/meta.yaml b/recipes/bioconductor-mgfm/meta.yaml index 96b11a26d7bb1..b03991485ed28 100644 --- a/recipes/bioconductor-mgfm/meta.yaml +++ b/recipes/bioconductor-mgfm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a59528c30e469dda4121cf7dbcb277e4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgfr/meta.yaml b/recipes/bioconductor-mgfr/meta.yaml index 1a4a045c27232..19bf99f106e59 100644 --- a/recipes/bioconductor-mgfr/meta.yaml +++ b/recipes/bioconductor-mgfr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f699f6c45ad738977582580b637dbff4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgsa/meta.yaml b/recipes/bioconductor-mgsa/meta.yaml index 86734c580e35f..ab4a9a959334f 100644 --- a/recipes/bioconductor-mgsa/meta.yaml +++ b/recipes/bioconductor-mgsa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2ac224cf9bb013adc8ede543a950c658 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74a.db/meta.yaml b/recipes/bioconductor-mgu74a.db/meta.yaml index a0f1a01a94b19..89e72205c4ecf 100644 --- a/recipes/bioconductor-mgu74a.db/meta.yaml +++ b/recipes/bioconductor-mgu74a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b746929f272a811061cf03040ec5ea3b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74acdf/meta.yaml b/recipes/bioconductor-mgu74acdf/meta.yaml index 55f5f35fc9213..0a3daf7298868 100644 --- a/recipes/bioconductor-mgu74acdf/meta.yaml +++ b/recipes/bioconductor-mgu74acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ed6e86398e51c7b0ddca4431797ecbc0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74aprobe/meta.yaml b/recipes/bioconductor-mgu74aprobe/meta.yaml index 1cf7ba8d32d82..061f82d5d4a0b 100644 --- a/recipes/bioconductor-mgu74aprobe/meta.yaml +++ b/recipes/bioconductor-mgu74aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7fea6d44856203e6293e0cd9fe1ad066 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74av2.db/meta.yaml b/recipes/bioconductor-mgu74av2.db/meta.yaml index e42b3c2978e90..219a9b1bcc269 100644 --- a/recipes/bioconductor-mgu74av2.db/meta.yaml +++ b/recipes/bioconductor-mgu74av2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ca637dece483fe0a0f752e4fa013d389 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74av2cdf/meta.yaml b/recipes/bioconductor-mgu74av2cdf/meta.yaml index b282ec238c3a9..a5500472004d0 100644 --- a/recipes/bioconductor-mgu74av2cdf/meta.yaml +++ b/recipes/bioconductor-mgu74av2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 35e2abb9fbfd68d90dc32a2faae00c95 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74av2probe/meta.yaml b/recipes/bioconductor-mgu74av2probe/meta.yaml index d51124fa42a1e..660827ed4c55c 100644 --- a/recipes/bioconductor-mgu74av2probe/meta.yaml +++ b/recipes/bioconductor-mgu74av2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ac540b0e26b14a411740233b02d3e11c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74b.db/meta.yaml b/recipes/bioconductor-mgu74b.db/meta.yaml index 94eb507c7c795..d9d5a62f12fdc 100644 --- a/recipes/bioconductor-mgu74b.db/meta.yaml +++ b/recipes/bioconductor-mgu74b.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9d019b194a64ec8c915514019896708e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74bcdf/meta.yaml b/recipes/bioconductor-mgu74bcdf/meta.yaml index 6ba27082c7e22..e1aa12365407e 100644 --- a/recipes/bioconductor-mgu74bcdf/meta.yaml +++ b/recipes/bioconductor-mgu74bcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a1f0f98f29d34a421622447252113e1e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74bprobe/meta.yaml b/recipes/bioconductor-mgu74bprobe/meta.yaml index 1b766fc1a0810..94272b88a15d7 100644 --- a/recipes/bioconductor-mgu74bprobe/meta.yaml +++ b/recipes/bioconductor-mgu74bprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 224d606e6fc87592d387dbaabe5cd353 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74bv2.db/meta.yaml b/recipes/bioconductor-mgu74bv2.db/meta.yaml index a679d93fbda8d..533da3eaba247 100644 --- a/recipes/bioconductor-mgu74bv2.db/meta.yaml +++ b/recipes/bioconductor-mgu74bv2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dfc729955539aa0a2a852745a515d413 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74bv2cdf/meta.yaml b/recipes/bioconductor-mgu74bv2cdf/meta.yaml index 966653a0ad1ac..870b05f92f609 100644 --- a/recipes/bioconductor-mgu74bv2cdf/meta.yaml +++ b/recipes/bioconductor-mgu74bv2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 45c48d11af03633dc10f8682b7ad74c5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74bv2probe/meta.yaml b/recipes/bioconductor-mgu74bv2probe/meta.yaml index 0166658d6a187..d6ca3574fba6c 100644 --- a/recipes/bioconductor-mgu74bv2probe/meta.yaml +++ b/recipes/bioconductor-mgu74bv2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f6a12f88ea3c43a3e885c7e9b3fd03d2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74c.db/meta.yaml b/recipes/bioconductor-mgu74c.db/meta.yaml index ec77c28c698de..43976c10b85aa 100644 --- a/recipes/bioconductor-mgu74c.db/meta.yaml +++ b/recipes/bioconductor-mgu74c.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a92c9ac08ce2f543b016268948178776 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74ccdf/meta.yaml b/recipes/bioconductor-mgu74ccdf/meta.yaml index d2e416e7b4492..7b07a1c5da8a9 100644 --- a/recipes/bioconductor-mgu74ccdf/meta.yaml +++ b/recipes/bioconductor-mgu74ccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 172e626b0e3072edc65c4efff35fe998 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74cprobe/meta.yaml b/recipes/bioconductor-mgu74cprobe/meta.yaml index a7e12d840d948..27801f1dc4042 100644 --- a/recipes/bioconductor-mgu74cprobe/meta.yaml +++ b/recipes/bioconductor-mgu74cprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 186992992708f0071fd552ef92b9e25c build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74cv2.db/meta.yaml b/recipes/bioconductor-mgu74cv2.db/meta.yaml index 2bf4ae5f508fc..b7819ee9bcf50 100644 --- a/recipes/bioconductor-mgu74cv2.db/meta.yaml +++ b/recipes/bioconductor-mgu74cv2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3f9ebd44f6dc4b23c009afa95afeb638 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74cv2cdf/meta.yaml b/recipes/bioconductor-mgu74cv2cdf/meta.yaml index 19381eb1d9d4d..2e972de27f18a 100644 --- a/recipes/bioconductor-mgu74cv2cdf/meta.yaml +++ b/recipes/bioconductor-mgu74cv2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9ef62b4b28f97770859db24393a07ed5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgu74cv2probe/meta.yaml b/recipes/bioconductor-mgu74cv2probe/meta.yaml index 9e89e142b3d91..08a2d3f811d1d 100644 --- a/recipes/bioconductor-mgu74cv2probe/meta.yaml +++ b/recipes/bioconductor-mgu74cv2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0373496c817a1c1a153114047cfa7c5b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mguatlas5k.db/meta.yaml b/recipes/bioconductor-mguatlas5k.db/meta.yaml index ec5f8a8099557..a1331ebd805a8 100644 --- a/recipes/bioconductor-mguatlas5k.db/meta.yaml +++ b/recipes/bioconductor-mguatlas5k.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 826093fe7228c08962aff36ad89af28e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgug4104a.db/meta.yaml b/recipes/bioconductor-mgug4104a.db/meta.yaml index fec2c1dcf76bf..6c1877f948ce9 100644 --- a/recipes/bioconductor-mgug4104a.db/meta.yaml +++ b/recipes/bioconductor-mgug4104a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7b1cef094a226257cd657ed8d61e9ef1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgug4120a.db/meta.yaml b/recipes/bioconductor-mgug4120a.db/meta.yaml index b180efbbef1fb..103d401119bef 100644 --- a/recipes/bioconductor-mgug4120a.db/meta.yaml +++ b/recipes/bioconductor-mgug4120a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bb57e8b2efe3d038ec2a0ace0313a4e7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgug4121a.db/meta.yaml b/recipes/bioconductor-mgug4121a.db/meta.yaml index c30a4b5d63736..0c898f3bc8154 100644 --- a/recipes/bioconductor-mgug4121a.db/meta.yaml +++ b/recipes/bioconductor-mgug4121a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6b5cc321d5175356c383b91e30e120b7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mgug4122a.db/meta.yaml b/recipes/bioconductor-mgug4122a.db/meta.yaml index 419aededf8350..acbe410255a57 100644 --- a/recipes/bioconductor-mgug4122a.db/meta.yaml +++ b/recipes/bioconductor-mgug4122a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5fcdce909ac1c0ccbf06bf6411f6fe52 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mi16cod.db/meta.yaml b/recipes/bioconductor-mi16cod.db/meta.yaml index 92ebef0a1f762..73d63099e322b 100644 --- a/recipes/bioconductor-mi16cod.db/meta.yaml +++ b/recipes/bioconductor-mi16cod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f3a8e6f45ce5c298c1b1c5b32bf2630c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-michip/meta.yaml b/recipes/bioconductor-michip/meta.yaml index acb8804ef6632..96c529360317b 100644 --- a/recipes/bioconductor-michip/meta.yaml +++ b/recipes/bioconductor-michip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6c43bb98c9ed2508386b44e5980c519b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-microbiome/meta.yaml b/recipes/bioconductor-microbiome/meta.yaml index 7b031e1c01502..72ed35201804f 100644 --- a/recipes/bioconductor-microbiome/meta.yaml +++ b/recipes/bioconductor-microbiome/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2f87ce1db908d6621fd4bfc97b8c6225 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-microrna/meta.yaml b/recipes/bioconductor-microrna/meta.yaml index 3ad2c3daba0de..dcd921a864e02 100644 --- a/recipes/bioconductor-microrna/meta.yaml +++ b/recipes/bioconductor-microrna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 14fbaf24634fc9b16f8a05ed579f43eb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-micrornaome/meta.yaml b/recipes/bioconductor-micrornaome/meta.yaml index 476e70c41a138..7d22ede88c4bc 100644 --- a/recipes/bioconductor-micrornaome/meta.yaml +++ b/recipes/bioconductor-micrornaome/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ac73eb0ae684ab92a99aaf4618878bcc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-micrornaome/post-link.sh b/recipes/bioconductor-micrornaome/post-link.sh index 4eb60b9732657..357b1c60b240c 100644 --- a/recipes/bioconductor-micrornaome/post-link.sh +++ b/recipes/bioconductor-micrornaome/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/microRNAome_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/microRNAome_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-micrornaome/bioconductor-micrornaome_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-micrornaome/bioconductor-micrornaome_1.6.0_src_all.tar.gz" ) MD5="ac73eb0ae684ab92a99aaf4618878bcc" diff --git a/recipes/bioconductor-migsa/meta.yaml b/recipes/bioconductor-migsa/meta.yaml index 642128ad6bf5b..129341cdc71f5 100644 --- a/recipes/bioconductor-migsa/meta.yaml +++ b/recipes/bioconductor-migsa/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} {% set name = "MIGSA" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 4635b1037713c025a5a76962cc95c25a + md5: 6a90cb21a907b61533aaae1f7535050f build: number: 0 rpaths: diff --git a/recipes/bioconductor-migsadata/meta.yaml b/recipes/bioconductor-migsadata/meta.yaml index 9f31d528d894b..21875a1aa5983 100644 --- a/recipes/bioconductor-migsadata/meta.yaml +++ b/recipes/bioconductor-migsadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c510924ea1ebf2892f33b16b3fd21473 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-migsadata/post-link.sh b/recipes/bioconductor-migsadata/post-link.sh index 845e446c92074..caa83bc1ad5fd 100644 --- a/recipes/bioconductor-migsadata/post-link.sh +++ b/recipes/bioconductor-migsadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MIGSAdata_1.8.0.tar.gz" "https://bioarchive.galaxyproject.org/MIGSAdata_1.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-migsadata/bioconductor-migsadata_1.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-migsadata/bioconductor-migsadata_1.8.0_src_all.tar.gz" ) MD5="c510924ea1ebf2892f33b16b3fd21473" diff --git a/recipes/bioconductor-mimager/meta.yaml b/recipes/bioconductor-mimager/meta.yaml index 2b15cb3351089..0cfbed832b96f 100644 --- a/recipes/bioconductor-mimager/meta.yaml +++ b/recipes/bioconductor-mimager/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 44be4c0b62ff306350b691c2518863bb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mimosa/meta.yaml b/recipes/bioconductor-mimosa/meta.yaml index 6b0e57e6e1390..4d6a724edb47f 100644 --- a/recipes/bioconductor-mimosa/meta.yaml +++ b/recipes/bioconductor-mimosa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e835f0461ae09de0d4a554cc4a5b8b57 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mineica/meta.yaml b/recipes/bioconductor-mineica/meta.yaml index d706eb269d49e..ada798004b2d0 100644 --- a/recipes/bioconductor-mineica/meta.yaml +++ b/recipes/bioconductor-mineica/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 912b6bf849378551e84ceeda342e31d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-minet/meta.yaml b/recipes/bioconductor-minet/meta.yaml index 05d1df4fa9f15..344512918bea5 100644 --- a/recipes/bioconductor-minet/meta.yaml +++ b/recipes/bioconductor-minet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7b93b37bf615c6b55b51095c04d626b8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-minfi/meta.yaml b/recipes/bioconductor-minfi/meta.yaml index 7e92d13a0e05c..bd8ffa294d9be 100644 --- a/recipes/bioconductor-minfi/meta.yaml +++ b/recipes/bioconductor-minfi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dacb09fcdb430b4ceb5d60ff816332a7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-minfidata/meta.yaml b/recipes/bioconductor-minfidata/meta.yaml index a62fa5e14df7e..cf0dd5d641327 100644 --- a/recipes/bioconductor-minfidata/meta.yaml +++ b/recipes/bioconductor-minfidata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 91b5668c839ed8fcca5ea36439c46473 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-minfidata/post-link.sh b/recipes/bioconductor-minfidata/post-link.sh index 2a156b8d236a2..fc489697dfee3 100644 --- a/recipes/bioconductor-minfidata/post-link.sh +++ b/recipes/bioconductor-minfidata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/minfiData_0.30.0.tar.gz" "https://bioarchive.galaxyproject.org/minfiData_0.30.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-minfidata/bioconductor-minfidata_0.30.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-minfidata/bioconductor-minfidata_0.30.0_src_all.tar.gz" ) MD5="91b5668c839ed8fcca5ea36439c46473" diff --git a/recipes/bioconductor-minfidataepic/meta.yaml b/recipes/bioconductor-minfidataepic/meta.yaml index 831547a61c050..0d206482de38f 100644 --- a/recipes/bioconductor-minfidataepic/meta.yaml +++ b/recipes/bioconductor-minfidataepic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3a7541b38950d9ca5cdff14c8b721e31 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -20,12 +20,12 @@ build: requirements: host: - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0' - - 'bioconductor-illuminahumanmethylationepicmanifest >=0.4.0,<0.5.0' + - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0' - 'bioconductor-minfi >=1.30.0,<1.31.0' - r-base run: - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0' - - 'bioconductor-illuminahumanmethylationepicmanifest >=0.4.0,<0.5.0' + - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0' - 'bioconductor-minfi >=1.30.0,<1.31.0' - r-base - curl diff --git a/recipes/bioconductor-minfidataepic/post-link.sh b/recipes/bioconductor-minfidataepic/post-link.sh index a53c5ecd9448d..2f646290e0e3c 100644 --- a/recipes/bioconductor-minfidataepic/post-link.sh +++ b/recipes/bioconductor-minfidataepic/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/minfiDataEPIC_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/minfiDataEPIC_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-minfidataepic/bioconductor-minfidataepic_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-minfidataepic/bioconductor-minfidataepic_1.10.0_src_all.tar.gz" ) MD5="3a7541b38950d9ca5cdff14c8b721e31" diff --git a/recipes/bioconductor-minimumdistance/meta.yaml b/recipes/bioconductor-minimumdistance/meta.yaml index 1c55c4701d426..bc8f3959d1776 100644 --- a/recipes/bioconductor-minimumdistance/meta.yaml +++ b/recipes/bioconductor-minimumdistance/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f22446874922f48dd65b7530c1fda2b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-minionsummarydata/meta.yaml b/recipes/bioconductor-minionsummarydata/meta.yaml index 6ec888b067502..558c8b1f1cf35 100644 --- a/recipes/bioconductor-minionsummarydata/meta.yaml +++ b/recipes/bioconductor-minionsummarydata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b5009bbbc5b2a0fa5e71180dd18a6a7b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-minionsummarydata/post-link.sh b/recipes/bioconductor-minionsummarydata/post-link.sh index 92b648ddd7a5f..164b682cbec32 100644 --- a/recipes/bioconductor-minionsummarydata/post-link.sh +++ b/recipes/bioconductor-minionsummarydata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/minionSummaryData_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/minionSummaryData_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-minionsummarydata/bioconductor-minionsummarydata_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-minionsummarydata/bioconductor-minionsummarydata_1.14.0_src_all.tar.gz" ) MD5="b5009bbbc5b2a0fa5e71180dd18a6a7b" diff --git a/recipes/bioconductor-mipp/meta.yaml b/recipes/bioconductor-mipp/meta.yaml index 7eede4539081c..cc607cca81a9a 100644 --- a/recipes/bioconductor-mipp/meta.yaml +++ b/recipes/bioconductor-mipp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 394a2e8f00d6eec273ab9ab6915a5b0b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mira/meta.yaml b/recipes/bioconductor-mira/meta.yaml index 7a02e2cd41216..028b793499ee6 100644 --- a/recipes/bioconductor-mira/meta.yaml +++ b/recipes/bioconductor-mira/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9f9204d9c3afd2c8e0dddd4a82f17853 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirage/meta.yaml b/recipes/bioconductor-mirage/meta.yaml index c671842db5361..41f9f9d95a3d0 100644 --- a/recipes/bioconductor-mirage/meta.yaml +++ b/recipes/bioconductor-mirage/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0aa3af0ddc085eee4d4470de1ca2404b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirbase.db/meta.yaml b/recipes/bioconductor-mirbase.db/meta.yaml index 4f4293233c8fe..3febe7209461e 100644 --- a/recipes/bioconductor-mirbase.db/meta.yaml +++ b/recipes/bioconductor-mirbase.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 316bc12cee8c2dd9240b7fc30cd1619e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirbaseconverter/meta.yaml b/recipes/bioconductor-mirbaseconverter/meta.yaml index c35a9cc9ded92..9a46b0aceae5b 100644 --- a/recipes/bioconductor-mirbaseconverter/meta.yaml +++ b/recipes/bioconductor-mirbaseconverter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 068113b3bb53e38fd5311719df6895d9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirbaseversions.db/meta.yaml b/recipes/bioconductor-mirbaseversions.db/meta.yaml index 54effffcca374..be30f0b64a584 100644 --- a/recipes/bioconductor-mirbaseversions.db/meta.yaml +++ b/recipes/bioconductor-mirbaseversions.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9944ab7a474f84a40100c56298f9cb77 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mircomp/meta.yaml b/recipes/bioconductor-mircomp/meta.yaml index d2228b95ef042..b3667aae2e907 100644 --- a/recipes/bioconductor-mircomp/meta.yaml +++ b/recipes/bioconductor-mircomp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1de52795a9179f5a582f06f640d37b63 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mircompdata/meta.yaml b/recipes/bioconductor-mircompdata/meta.yaml index 4a4f0d8559a9c..d1af549f479ba 100644 --- a/recipes/bioconductor-mircompdata/meta.yaml +++ b/recipes/bioconductor-mircompdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 30e555c141406e16ec2a98a71fb9dfb3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mircompdata/post-link.sh b/recipes/bioconductor-mircompdata/post-link.sh index 3434520022815..8d0599a41faee 100644 --- a/recipes/bioconductor-mircompdata/post-link.sh +++ b/recipes/bioconductor-mircompdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/miRcompData_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/miRcompData_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mircompdata/bioconductor-mircompdata_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mircompdata/bioconductor-mircompdata_1.14.0_src_all.tar.gz" ) MD5="30e555c141406e16ec2a98a71fb9dfb3" diff --git a/recipes/bioconductor-mirintegrator/meta.yaml b/recipes/bioconductor-mirintegrator/meta.yaml index 9132061fb17d2..b242b72b5e948 100644 --- a/recipes/bioconductor-mirintegrator/meta.yaml +++ b/recipes/bioconductor-mirintegrator/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a25c9b60b0e10b2cc870f6ac5ba87118 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirlab/meta.yaml b/recipes/bioconductor-mirlab/meta.yaml index 24eb4e2d82656..5ebaaf1dc86d4 100644 --- a/recipes/bioconductor-mirlab/meta.yaml +++ b/recipes/bioconductor-mirlab/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.14.0" %} +{% set version = "1.14.2" %} {% set name = "miRLAB" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 0f9533b1c1d4d19d3c88d8d122a919bd + md5: 5971f368dc66129d53d7b00f6c069e18 build: number: 0 rpaths: diff --git a/recipes/bioconductor-mirmine/meta.yaml b/recipes/bioconductor-mirmine/meta.yaml index 5d366122d76fa..e396a571edffd 100644 --- a/recipes/bioconductor-mirmine/meta.yaml +++ b/recipes/bioconductor-mirmine/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: db116d76b70324451da0adf8db57b280 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirna102xgaincdf/meta.yaml b/recipes/bioconductor-mirna102xgaincdf/meta.yaml index eb476e0a534ff..6fd8075739a47 100644 --- a/recipes/bioconductor-mirna102xgaincdf/meta.yaml +++ b/recipes/bioconductor-mirna102xgaincdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9091a45c2ac15c2de0263743ab334f97 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirna10cdf/meta.yaml b/recipes/bioconductor-mirna10cdf/meta.yaml index fe9519c2251b2..ca4392c6d4ecf 100644 --- a/recipes/bioconductor-mirna10cdf/meta.yaml +++ b/recipes/bioconductor-mirna10cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 814da2a2e298e132f4db0b2e8ab814be build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirna10probe/meta.yaml b/recipes/bioconductor-mirna10probe/meta.yaml index 9fd5fafa2d779..12b4ee40caa30 100644 --- a/recipes/bioconductor-mirna10probe/meta.yaml +++ b/recipes/bioconductor-mirna10probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8bfa6cdfeee1c563b4881214bd5d4ce1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirna20cdf/meta.yaml b/recipes/bioconductor-mirna20cdf/meta.yaml index 6ee762be40b4c..53f18ca1a40e4 100644 --- a/recipes/bioconductor-mirna20cdf/meta.yaml +++ b/recipes/bioconductor-mirna20cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 56f7807673ff108427ae7f6bdf85ae1c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirnameconverter/meta.yaml b/recipes/bioconductor-mirnameconverter/meta.yaml index af4aafc8da4f3..0fbfceda3d7c5 100644 --- a/recipes/bioconductor-mirnameconverter/meta.yaml +++ b/recipes/bioconductor-mirnameconverter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 677abb97b5124109ab30fe667414039f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,13 +21,13 @@ build: requirements: host: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - - 'bioconductor-mirbaseversions.db >=1.2.0,<1.3.0' + - 'bioconductor-mirbaseversions.db >=1.1.0,<1.2.0' - r-base - r-dbi - r-reshape2 run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - - 'bioconductor-mirbaseversions.db >=1.2.0,<1.3.0' + - 'bioconductor-mirbaseversions.db >=1.1.0,<1.2.0' - r-base - r-dbi - r-reshape2 diff --git a/recipes/bioconductor-mirnapath/meta.yaml b/recipes/bioconductor-mirnapath/meta.yaml index fabd597167b0c..594e1bec9a5ed 100644 --- a/recipes/bioconductor-mirnapath/meta.yaml +++ b/recipes/bioconductor-mirnapath/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 61d82ff92e3b7025d776598e719eb647 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirnatap.db/meta.yaml b/recipes/bioconductor-mirnatap.db/meta.yaml index 4a9fd4dd21b67..bc403181cbb63 100644 --- a/recipes/bioconductor-mirnatap.db/meta.yaml +++ b/recipes/bioconductor-mirnatap.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 48010280b68d6f1ddbff3b374132ce0a build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirnatap/meta.yaml b/recipes/bioconductor-mirnatap/meta.yaml index 03316d230d284..0c19e48f699b0 100644 --- a/recipes/bioconductor-mirnatap/meta.yaml +++ b/recipes/bioconductor-mirnatap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8fe90803d5bec9678d94e761e384d2f4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirnatarget/meta.yaml b/recipes/bioconductor-mirnatarget/meta.yaml index 7cfc557d4ce2f..7769bdb215325 100644 --- a/recipes/bioconductor-mirnatarget/meta.yaml +++ b/recipes/bioconductor-mirnatarget/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f53ec633f1b577134140f432f0af82db build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirnatarget/post-link.sh b/recipes/bioconductor-mirnatarget/post-link.sh index 945cfde1bc52f..a14fb4b582628 100644 --- a/recipes/bioconductor-mirnatarget/post-link.sh +++ b/recipes/bioconductor-mirnatarget/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/miRNATarget_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/miRNATarget_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mirnatarget/bioconductor-mirnatarget_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mirnatarget/bioconductor-mirnatarget_1.22.0_src_all.tar.gz" ) MD5="f53ec633f1b577134140f432f0af82db" diff --git a/recipes/bioconductor-mirsm/meta.yaml b/recipes/bioconductor-mirsm/meta.yaml index 14e5f5517df9e..7c27538e73d5d 100644 --- a/recipes/bioconductor-mirsm/meta.yaml +++ b/recipes/bioconductor-mirsm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6bd3d592afb3071db1e99948458d0a41 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirsponge/meta.yaml b/recipes/bioconductor-mirsponge/meta.yaml index b97bf4ac72b6a..9bf3ac0d11396 100644 --- a/recipes/bioconductor-mirsponge/meta.yaml +++ b/recipes/bioconductor-mirsponge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 55cba888afbd7ad39a0661a38600012e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mirsponger/meta.yaml b/recipes/bioconductor-mirsponger/meta.yaml index 45d06afffc67e..20cba549c80ae 100644 --- a/recipes/bioconductor-mirsponger/meta.yaml +++ b/recipes/bioconductor-mirsponger/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.10.0" %} +{% set version = "1.10.1" %} {% set name = "miRspongeR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: c959ca897a5dffa0fd7be57052580ef6 + md5: 95e1671b74061b6dd80331147c6bc68d build: number: 0 rpaths: diff --git a/recipes/bioconductor-mirsynergy/meta.yaml b/recipes/bioconductor-mirsynergy/meta.yaml index 9799298ec3093..9ca815a5eb8a5 100644 --- a/recipes/bioconductor-mirsynergy/meta.yaml +++ b/recipes/bioconductor-mirsynergy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3acbca5e8024960a4a5cf8d2c85c656b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-missmethyl/meta.yaml b/recipes/bioconductor-missmethyl/meta.yaml index ced1631987d97..6874fcd5ecd85 100644 --- a/recipes/bioconductor-missmethyl/meta.yaml +++ b/recipes/bioconductor-missmethyl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3c31671ca90e5b59d28e99894fee1e8f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -25,7 +25,7 @@ requirements: - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0' - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0' - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0' - - 'bioconductor-illuminahumanmethylationepicmanifest >=0.4.0,<0.5.0' + - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0' - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-methylumi >=2.30.0,<2.31.0' - 'bioconductor-minfi >=1.30.0,<1.31.0' @@ -41,7 +41,7 @@ requirements: - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0' - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0' - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0' - - 'bioconductor-illuminahumanmethylationepicmanifest >=0.4.0,<0.5.0' + - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0' - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-methylumi >=2.30.0,<2.31.0' - 'bioconductor-minfi >=1.30.0,<1.31.0' diff --git a/recipes/bioconductor-missrows/meta.yaml b/recipes/bioconductor-missrows/meta.yaml index e46c86187bbb9..b6d72c7fff871 100644 --- a/recipes/bioconductor-missrows/meta.yaml +++ b/recipes/bioconductor-missrows/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b6495bc10db157bf9e04d3130d360c99 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mitoode/meta.yaml b/recipes/bioconductor-mitoode/meta.yaml index b14018c91abb9..0f838621490cd 100644 --- a/recipes/bioconductor-mitoode/meta.yaml +++ b/recipes/bioconductor-mitoode/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 99ecb4b674edcc0a17849d5b62105635 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mitoodedata/meta.yaml b/recipes/bioconductor-mitoodedata/meta.yaml index 24704a46deee3..fadf703be25ff 100644 --- a/recipes/bioconductor-mitoodedata/meta.yaml +++ b/recipes/bioconductor-mitoodedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c306352e4f966d2f508a2b18ab299207 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mitoodedata/post-link.sh b/recipes/bioconductor-mitoodedata/post-link.sh index 6ed398306b8a0..fa8e08d131cdb 100644 --- a/recipes/bioconductor-mitoodedata/post-link.sh +++ b/recipes/bioconductor-mitoodedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mitoODEdata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/mitoODEdata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mitoodedata/bioconductor-mitoodedata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mitoodedata/bioconductor-mitoodedata_1.20.0_src_all.tar.gz" ) MD5="c306352e4f966d2f508a2b18ab299207" diff --git a/recipes/bioconductor-mixomics/meta.yaml b/recipes/bioconductor-mixomics/meta.yaml index 2f23a4b84bda5..6a8584646f474 100644 --- a/recipes/bioconductor-mixomics/meta.yaml +++ b/recipes/bioconductor-mixomics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1bf9c089a85fd248901764d978ff59e2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mlinterfaces/meta.yaml b/recipes/bioconductor-mlinterfaces/meta.yaml index 86a66da9aa108..2e2820233a946 100644 --- a/recipes/bioconductor-mlinterfaces/meta.yaml +++ b/recipes/bioconductor-mlinterfaces/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 20a7b8da9ea5a3ad999edd44626aac59 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mlm4omics/meta.yaml b/recipes/bioconductor-mlm4omics/meta.yaml index 1cbca27162343..8e458fbd15b1f 100644 --- a/recipes/bioconductor-mlm4omics/meta.yaml +++ b/recipes/bioconductor-mlm4omics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5df4309116903f2eb7418e7fb783fd8e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mlp/meta.yaml b/recipes/bioconductor-mlp/meta.yaml index ab17749326c4a..9518883734f27 100644 --- a/recipes/bioconductor-mlp/meta.yaml +++ b/recipes/bioconductor-mlp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0f025c2156526df2dd6c926f3f9b7820 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mlseq/meta.yaml b/recipes/bioconductor-mlseq/meta.yaml index a626f03c4eabe..690a04f87abf6 100644 --- a/recipes/bioconductor-mlseq/meta.yaml +++ b/recipes/bioconductor-mlseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 692c6c7c6042f25c428681642f36dfe7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mm24kresogen.db/meta.yaml b/recipes/bioconductor-mm24kresogen.db/meta.yaml index 00536e3f758f0..a267c5f720e28 100644 --- a/recipes/bioconductor-mm24kresogen.db/meta.yaml +++ b/recipes/bioconductor-mm24kresogen.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 437f5d4bc225ee500af1ecc2d4da472b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mmagilentdesign026655.db/meta.yaml b/recipes/bioconductor-mmagilentdesign026655.db/meta.yaml index bcad399b0fa41..0704ebfb159eb 100644 --- a/recipes/bioconductor-mmagilentdesign026655.db/meta.yaml +++ b/recipes/bioconductor-mmagilentdesign026655.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7ef619bd2c74f22ea4f3c2b2c4131fe9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mmdiff2/meta.yaml b/recipes/bioconductor-mmdiff2/meta.yaml index d60705e55cad3..72259319d5d65 100644 --- a/recipes/bioconductor-mmdiff2/meta.yaml +++ b/recipes/bioconductor-mmdiff2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 79ca696eca801944858d690fba6f6468 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mmdiffbamsubset/meta.yaml b/recipes/bioconductor-mmdiffbamsubset/meta.yaml index 395e2bb4d9e89..c0ee403f09ddf 100644 --- a/recipes/bioconductor-mmdiffbamsubset/meta.yaml +++ b/recipes/bioconductor-mmdiffbamsubset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a4db104aef49d0178d476f3539d5f218 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mmdiffbamsubset/post-link.sh b/recipes/bioconductor-mmdiffbamsubset/post-link.sh index cb9040e00f61b..cb4ba66da8e52 100644 --- a/recipes/bioconductor-mmdiffbamsubset/post-link.sh +++ b/recipes/bioconductor-mmdiffbamsubset/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MMDiffBamSubset_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/MMDiffBamSubset_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mmdiffbamsubset/bioconductor-mmdiffbamsubset_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mmdiffbamsubset/bioconductor-mmdiffbamsubset_1.20.0_src_all.tar.gz" ) MD5="a4db104aef49d0178d476f3539d5f218" diff --git a/recipes/bioconductor-mmpalatemirna/meta.yaml b/recipes/bioconductor-mmpalatemirna/meta.yaml index aa6a09bf28957..8aac90cf3aa5d 100644 --- a/recipes/bioconductor-mmpalatemirna/meta.yaml +++ b/recipes/bioconductor-mmpalatemirna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f86647e1b79b46ede2ace3a46e7e1109 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mnem/meta.yaml b/recipes/bioconductor-mnem/meta.yaml index a386599eecb8c..de64b3b51050a 100644 --- a/recipes/bioconductor-mnem/meta.yaml +++ b/recipes/bioconductor-mnem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c15128027e81bc349db30c15c64ce477 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moda/meta.yaml b/recipes/bioconductor-moda/meta.yaml index dd7728ff88d59..1346667f17a2c 100644 --- a/recipes/bioconductor-moda/meta.yaml +++ b/recipes/bioconductor-moda/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8aea3d81a6f5c87f07d12c96f70cee15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-modstrings/meta.yaml b/recipes/bioconductor-modstrings/meta.yaml index 3add6f17c73f1..2d8a4e04459e5 100644 --- a/recipes/bioconductor-modstrings/meta.yaml +++ b/recipes/bioconductor-modstrings/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.3" %} {% set name = "Modstrings" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 3c1ce4bf65e827c9fb4385f3aaffd84d + md5: 349a818c5d057ab96d04e5680c77a2a9 build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: BiocStyle, knitr, rmarkdown, testthat, usethis, sessioninfo +# Suggests: BiocStyle, knitr, rmarkdown, testthat, usethis requirements: host: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' diff --git a/recipes/bioconductor-moe430a.db/meta.yaml b/recipes/bioconductor-moe430a.db/meta.yaml index e663ac0b051b8..379b521ab1e89 100644 --- a/recipes/bioconductor-moe430a.db/meta.yaml +++ b/recipes/bioconductor-moe430a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c95b12e1954943ccc347ae57794e1c19 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moe430acdf/meta.yaml b/recipes/bioconductor-moe430acdf/meta.yaml index a5242e47aa388..550d41d9563d0 100644 --- a/recipes/bioconductor-moe430acdf/meta.yaml +++ b/recipes/bioconductor-moe430acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b03f1295fc483f0d782a4615e8ca0137 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moe430aprobe/meta.yaml b/recipes/bioconductor-moe430aprobe/meta.yaml index 413bc60b054e7..e8852a88c82af 100644 --- a/recipes/bioconductor-moe430aprobe/meta.yaml +++ b/recipes/bioconductor-moe430aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0aa83189d04599a65211d1a2f0a51c8f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moe430b.db/meta.yaml b/recipes/bioconductor-moe430b.db/meta.yaml index 5d8d91d89978d..42428b3208b6d 100644 --- a/recipes/bioconductor-moe430b.db/meta.yaml +++ b/recipes/bioconductor-moe430b.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 74027eafdb3815a8310e84ade3a43dff build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moe430bcdf/meta.yaml b/recipes/bioconductor-moe430bcdf/meta.yaml index c945b04478bc4..34f5012ee1d03 100644 --- a/recipes/bioconductor-moe430bcdf/meta.yaml +++ b/recipes/bioconductor-moe430bcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b7112dcf8ccfe4e079ca67ff62046f2e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moe430bprobe/meta.yaml b/recipes/bioconductor-moe430bprobe/meta.yaml index c82448fe5e29c..3e6da5dd8c22d 100644 --- a/recipes/bioconductor-moe430bprobe/meta.yaml +++ b/recipes/bioconductor-moe430bprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1368e6f4225babe7a693ccd39a3a436a build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moex10stprobeset.db/meta.yaml b/recipes/bioconductor-moex10stprobeset.db/meta.yaml index 0060efff8a9a0..6dae2660cc361 100644 --- a/recipes/bioconductor-moex10stprobeset.db/meta.yaml +++ b/recipes/bioconductor-moex10stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1464d765c3db1bf50a6eb115ae30c74c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moex10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-moex10sttranscriptcluster.db/meta.yaml index f64258a1ded03..5eed6d6b16872 100644 --- a/recipes/bioconductor-moex10sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-moex10sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 67253f6ab5cb335049139951ca8064bd build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moexexonprobesetlocation/meta.yaml b/recipes/bioconductor-moexexonprobesetlocation/meta.yaml index 51a2afa5ef5ee..e2569794d5e81 100644 --- a/recipes/bioconductor-moexexonprobesetlocation/meta.yaml +++ b/recipes/bioconductor-moexexonprobesetlocation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 07eea205fce2a8cf4585fa7e71fb0057 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mofa/meta.yaml b/recipes/bioconductor-mofa/meta.yaml index b563d0d34a1d3..5ec3da2638b54 100644 --- a/recipes/bioconductor-mofa/meta.yaml +++ b/recipes/bioconductor-mofa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a117c49e792026198df1770613e3761c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -39,13 +39,6 @@ requirements: - r-reshape2 - r-reticulate - r-scales - - python - - numpy - - pandas - - h5py - - scipy - - sklearn - - mofapy run: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-multiassayexperiment >=1.10.0,<1.11.0' @@ -65,13 +58,6 @@ requirements: - r-reshape2 - r-reticulate - r-scales - - python - - numpy - - pandas - - h5py - - scipy - - sklearn - - mofapy test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-mofadata/meta.yaml b/recipes/bioconductor-mofadata/meta.yaml index 931942f94d12c..7747a97e7a239 100644 --- a/recipes/bioconductor-mofadata/meta.yaml +++ b/recipes/bioconductor-mofadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d6487d6a88855eff8711a5af287bbb2d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mofadata/post-link.sh b/recipes/bioconductor-mofadata/post-link.sh index 761d8fe340fde..b0240a6a4c3dc 100644 --- a/recipes/bioconductor-mofadata/post-link.sh +++ b/recipes/bioconductor-mofadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MOFAdata_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/MOFAdata_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mofadata/bioconductor-mofadata_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mofadata/bioconductor-mofadata_1.0.0_src_all.tar.gz" ) MD5="d6487d6a88855eff8711a5af287bbb2d" diff --git a/recipes/bioconductor-mogene.1.0.st.v1frmavecs/meta.yaml b/recipes/bioconductor-mogene.1.0.st.v1frmavecs/meta.yaml index dfd923519d797..0def66e22292a 100644 --- a/recipes/bioconductor-mogene.1.0.st.v1frmavecs/meta.yaml +++ b/recipes/bioconductor-mogene.1.0.st.v1frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b46f76903d0f19b85e8fa30347813ff5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene10stprobeset.db/meta.yaml b/recipes/bioconductor-mogene10stprobeset.db/meta.yaml index 337bd78979011..1d5ab481204c2 100644 --- a/recipes/bioconductor-mogene10stprobeset.db/meta.yaml +++ b/recipes/bioconductor-mogene10stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f4859f71d1314d19ead1c4fe20c04e4b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-mogene10sttranscriptcluster.db/meta.yaml index b46093ada4f8a..3809ee904dbaf 100644 --- a/recipes/bioconductor-mogene10sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-mogene10sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 84966d4986d62c859f61f2725c7b20ea build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene10stv1cdf/meta.yaml b/recipes/bioconductor-mogene10stv1cdf/meta.yaml index 04d8e95239922..2ab49df921581 100644 --- a/recipes/bioconductor-mogene10stv1cdf/meta.yaml +++ b/recipes/bioconductor-mogene10stv1cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9c0271f5d6493290fc47f041a8c3f925 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene10stv1probe/meta.yaml b/recipes/bioconductor-mogene10stv1probe/meta.yaml index 821439abceb64..cfefccfbb133f 100644 --- a/recipes/bioconductor-mogene10stv1probe/meta.yaml +++ b/recipes/bioconductor-mogene10stv1probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 63cba1e2a0edee9f201267057fddb0fa build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene11stprobeset.db/meta.yaml b/recipes/bioconductor-mogene11stprobeset.db/meta.yaml index 179511eb22d1c..b1f5688f11f3d 100644 --- a/recipes/bioconductor-mogene11stprobeset.db/meta.yaml +++ b/recipes/bioconductor-mogene11stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9bfdd5ede041282555dca8a6a75e7579 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene11sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-mogene11sttranscriptcluster.db/meta.yaml index a5712d47ed6ab..53aabd012495f 100644 --- a/recipes/bioconductor-mogene11sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-mogene11sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a3bc3ed82534b5a53bdba583f7a403c7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene20stprobeset.db/meta.yaml b/recipes/bioconductor-mogene20stprobeset.db/meta.yaml index 6f4a5d48bb040..df6a2f2504ce3 100644 --- a/recipes/bioconductor-mogene20stprobeset.db/meta.yaml +++ b/recipes/bioconductor-mogene20stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 228a1172930e05806cd8b184b326b556 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene20sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-mogene20sttranscriptcluster.db/meta.yaml index 9e3f5f54d6f25..1387014c72ca3 100644 --- a/recipes/bioconductor-mogene20sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-mogene20sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c3c6f08d15d9cd3fe850860de0a06213 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene21stprobeset.db/meta.yaml b/recipes/bioconductor-mogene21stprobeset.db/meta.yaml index 61a11dc2e3b1e..4069e51a0cd99 100644 --- a/recipes/bioconductor-mogene21stprobeset.db/meta.yaml +++ b/recipes/bioconductor-mogene21stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 34c2b435725e7dcd29c3d921453216dc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogene21sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-mogene21sttranscriptcluster.db/meta.yaml index d6ba7d28531a2..d4cd536016780 100644 --- a/recipes/bioconductor-mogene21sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-mogene21sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0f131b607470652724d7b22ae2af1c7a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mogsa/meta.yaml b/recipes/bioconductor-mogsa/meta.yaml index 9aa704aace017..4469d1e3802de 100644 --- a/recipes/bioconductor-mogsa/meta.yaml +++ b/recipes/bioconductor-mogsa/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.17.5" %} +{% set version = "1.18.1" %} {% set name = "mogsa" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 64e223e6393c7db286b6a87874b4647c + md5: 215bb7c5ec2b9728a7ddd031190ca810 build: number: 0 rpaths: diff --git a/recipes/bioconductor-monocle/meta.yaml b/recipes/bioconductor-monocle/meta.yaml index 86140b91cc470..8f3a7b27f67eb 100644 --- a/recipes/bioconductor-monocle/meta.yaml +++ b/recipes/bioconductor-monocle/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d56a4b34d746a190c68fcb54d4c0dab7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-moonlightr/build.sh b/recipes/bioconductor-moonlightr/build.sh index c1d13421f5f1e..4b4a73a150a8f 100644 --- a/recipes/bioconductor-moonlightr/build.sh +++ b/recipes/bioconductor-moonlightr/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-moonlightr/meta.yaml b/recipes/bioconductor-moonlightr/meta.yaml index 4ef9501810a89..ce3f1a576d2a2 100644 --- a/recipes/bioconductor-moonlightr/meta.yaml +++ b/recipes/bioconductor-moonlightr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.9.0" %} +{% set version = "1.10.0" %} {% set name = "MoonlightR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: b611552e9e00c271a50d757aef81b93f + md5: 3cd30ab5e407ff40c1f5a26c088ab84b build: number: 0 rpaths: @@ -19,6 +19,13 @@ build: noarch: generic # Suggests: BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, png requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-clusterprofiler >=3.12.0,<3.13.0' @@ -57,7 +64,7 @@ requirements: - r-rismed test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>= 3)' diff --git a/recipes/bioconductor-mops/meta.yaml b/recipes/bioconductor-mops/meta.yaml index 2846f24e8ce58..ff5a309e3b344 100644 --- a/recipes/bioconductor-mops/meta.yaml +++ b/recipes/bioconductor-mops/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 475aff991362cea8669041b4a8252c3e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mosaics/meta.yaml b/recipes/bioconductor-mosaics/meta.yaml index 831e83874d636..3c7b394477013 100644 --- a/recipes/bioconductor-mosaics/meta.yaml +++ b/recipes/bioconductor-mosaics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 91e1ae361b6c172d27f265e44b54609e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -30,7 +30,6 @@ requirements: - r-lattice - r-mass - r-rcpp - - perl run: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' @@ -42,7 +41,6 @@ requirements: - r-lattice - r-mass - r-rcpp - - perl build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-mosaicsexample/meta.yaml b/recipes/bioconductor-mosaicsexample/meta.yaml index b6952a62cc035..91df2ce0c5c3f 100644 --- a/recipes/bioconductor-mosaicsexample/meta.yaml +++ b/recipes/bioconductor-mosaicsexample/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c87a905df5b38287895aff9adb2c8406 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mosaicsexample/post-link.sh b/recipes/bioconductor-mosaicsexample/post-link.sh index c158495987d46..ea77b8f7327cc 100644 --- a/recipes/bioconductor-mosaicsexample/post-link.sh +++ b/recipes/bioconductor-mosaicsexample/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mosaicsExample_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/mosaicsExample_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mosaicsexample/bioconductor-mosaicsexample_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mosaicsexample/bioconductor-mosaicsexample_1.22.0_src_all.tar.gz" ) MD5="c87a905df5b38287895aff9adb2c8406" diff --git a/recipes/bioconductor-motifbreakr/meta.yaml b/recipes/bioconductor-motifbreakr/meta.yaml index 573eeaa0cb4b3..39e132205a657 100644 --- a/recipes/bioconductor-motifbreakr/meta.yaml +++ b/recipes/bioconductor-motifbreakr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3dd9087f717dc73dff5223aea9cde251 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-motifcounter/meta.yaml b/recipes/bioconductor-motifcounter/meta.yaml index 9d21bbf6a0b52..0b3a746a7c424 100644 --- a/recipes/bioconductor-motifcounter/meta.yaml +++ b/recipes/bioconductor-motifcounter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b2423266714b75836a8250ebb1a3a0a6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-motifdb/meta.yaml b/recipes/bioconductor-motifdb/meta.yaml index d198c3844681d..69fe550d4548b 100644 --- a/recipes/bioconductor-motifdb/meta.yaml +++ b/recipes/bioconductor-motifdb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a67c80f80fe5a4c3e4c6f6c56c1fc5cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-motifmatchr/meta.yaml b/recipes/bioconductor-motifmatchr/meta.yaml index 85eed71f58bf0..3c07c6aeacb0d 100644 --- a/recipes/bioconductor-motifmatchr/meta.yaml +++ b/recipes/bioconductor-motifmatchr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e8538782c56a4cae9ff880a8bcc8ec3d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-motifrg/meta.yaml b/recipes/bioconductor-motifrg/meta.yaml index cceca36411bf2..09dd4d9498be0 100644 --- a/recipes/bioconductor-motifrg/meta.yaml +++ b/recipes/bioconductor-motifrg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c6f8456a1449bf9101aed4ce783e682a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-motifstack/meta.yaml b/recipes/bioconductor-motifstack/meta.yaml index dfafafe2dcadb..3cc45bad78e41 100644 --- a/recipes/bioconductor-motifstack/meta.yaml +++ b/recipes/bioconductor-motifstack/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 91fbdf0016d23504079d5eb6511cebee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-motiv/meta.yaml b/recipes/bioconductor-motiv/meta.yaml index f1e75bc93f715..698947f885283 100644 --- a/recipes/bioconductor-motiv/meta.yaml +++ b/recipes/bioconductor-motiv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f8a64bac15749b7e95f5169c52080c53 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,7 +27,6 @@ requirements: - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - r-lattice - - gsl run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-biostrings >=2.52.0,<2.53.0' @@ -36,7 +35,6 @@ requirements: - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - r-lattice - - gsl build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-mouse.db0/meta.yaml b/recipes/bioconductor-mouse.db0/meta.yaml index d151d969dc254..5cb349a4930ea 100644 --- a/recipes/bioconductor-mouse.db0/meta.yaml +++ b/recipes/bioconductor-mouse.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1927a435523cfdf1a94b67a674fdfce5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse.db0/post-link.sh b/recipes/bioconductor-mouse.db0/post-link.sh index 4e63c782f8578..c81c97d4e8345 100644 --- a/recipes/bioconductor-mouse.db0/post-link.sh +++ b/recipes/bioconductor-mouse.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/mouse.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/mouse.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mouse.db0/bioconductor-mouse.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mouse.db0/bioconductor-mouse.db0_3.8.2_src_all.tar.gz" ) MD5="1927a435523cfdf1a94b67a674fdfce5" diff --git a/recipes/bioconductor-mouse4302.db/meta.yaml b/recipes/bioconductor-mouse4302.db/meta.yaml index 3019d93ce383a..b5810334396ec 100644 --- a/recipes/bioconductor-mouse4302.db/meta.yaml +++ b/recipes/bioconductor-mouse4302.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f959fad0072a265d04a8851db1deed74 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse4302barcodevecs/meta.yaml b/recipes/bioconductor-mouse4302barcodevecs/meta.yaml index b4679920a31f3..afccd5b1ccd10 100644 --- a/recipes/bioconductor-mouse4302barcodevecs/meta.yaml +++ b/recipes/bioconductor-mouse4302barcodevecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8d80293e4fa8d95431c9e1ccba298433 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse4302barcodevecs/post-link.sh b/recipes/bioconductor-mouse4302barcodevecs/post-link.sh index 2235c32cd2673..1583d340090f0 100644 --- a/recipes/bioconductor-mouse4302barcodevecs/post-link.sh +++ b/recipes/bioconductor-mouse4302barcodevecs/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mouse4302barcodevecs_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/mouse4302barcodevecs_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mouse4302barcodevecs/bioconductor-mouse4302barcodevecs_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mouse4302barcodevecs/bioconductor-mouse4302barcodevecs_1.22.0_src_all.tar.gz" ) MD5="8d80293e4fa8d95431c9e1ccba298433" diff --git a/recipes/bioconductor-mouse4302cdf/meta.yaml b/recipes/bioconductor-mouse4302cdf/meta.yaml index 5ca6290ec18d0..f92fd09f8e095 100644 --- a/recipes/bioconductor-mouse4302cdf/meta.yaml +++ b/recipes/bioconductor-mouse4302cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bda3463613f958de35c58777db05cec2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse4302frmavecs/meta.yaml b/recipes/bioconductor-mouse4302frmavecs/meta.yaml index f622f08eab143..894bf38053622 100644 --- a/recipes/bioconductor-mouse4302frmavecs/meta.yaml +++ b/recipes/bioconductor-mouse4302frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ec144b381abbe54d696356c1c124e372 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse4302probe/meta.yaml b/recipes/bioconductor-mouse4302probe/meta.yaml index b525389dc0a09..fc26412db61f1 100644 --- a/recipes/bioconductor-mouse4302probe/meta.yaml +++ b/recipes/bioconductor-mouse4302probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7116787a7db241a545e79e419a8cfa0d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse430a2.db/meta.yaml b/recipes/bioconductor-mouse430a2.db/meta.yaml index 2800ade47d142..5686e76a83e77 100644 --- a/recipes/bioconductor-mouse430a2.db/meta.yaml +++ b/recipes/bioconductor-mouse430a2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4700ba9bf151277334af4fef9020a197 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse430a2cdf/meta.yaml b/recipes/bioconductor-mouse430a2cdf/meta.yaml index 4150eb806663f..d76ed05f86408 100644 --- a/recipes/bioconductor-mouse430a2cdf/meta.yaml +++ b/recipes/bioconductor-mouse430a2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1114c0415d1200bc21ad205e0830b075 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse430a2frmavecs/meta.yaml b/recipes/bioconductor-mouse430a2frmavecs/meta.yaml index f374e9ab4f1d1..6e9d155d8061d 100644 --- a/recipes/bioconductor-mouse430a2frmavecs/meta.yaml +++ b/recipes/bioconductor-mouse430a2frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3bcb8de9182bbb8de5d560748eafa0cc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mouse430a2probe/meta.yaml b/recipes/bioconductor-mouse430a2probe/meta.yaml index ec7a90b6c616c..b56b0376e868f 100644 --- a/recipes/bioconductor-mouse430a2probe/meta.yaml +++ b/recipes/bioconductor-mouse430a2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bb3c34477d4fcf03a539772011118795 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mousechrloc/meta.yaml b/recipes/bioconductor-mousechrloc/meta.yaml index 8924522d43f55..808d980bb751a 100644 --- a/recipes/bioconductor-mousechrloc/meta.yaml +++ b/recipes/bioconductor-mousechrloc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0b81d7391e628cc355af4de3c5585a5f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mpedbarray.db/meta.yaml b/recipes/bioconductor-mpedbarray.db/meta.yaml index beb616291dd66..00898203bc99c 100644 --- a/recipes/bioconductor-mpedbarray.db/meta.yaml +++ b/recipes/bioconductor-mpedbarray.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7bcd1fee1554b6f8844c9bf30b7db4ef build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mpfe/meta.yaml b/recipes/bioconductor-mpfe/meta.yaml index f891d02081636..a49aa6e0c0b8e 100644 --- a/recipes/bioconductor-mpfe/meta.yaml +++ b/recipes/bioconductor-mpfe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3969c31ce3bb273790779fdc1be3287a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mpra/meta.yaml b/recipes/bioconductor-mpra/meta.yaml index 373962bacc429..f2ffb78737633 100644 --- a/recipes/bioconductor-mpra/meta.yaml +++ b/recipes/bioconductor-mpra/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9d8851deeb9c912a5d31773f7d0a967e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mpranalyze/meta.yaml b/recipes/bioconductor-mpranalyze/meta.yaml index a8eebafea2da7..dce96f92aa5d5 100644 --- a/recipes/bioconductor-mpranalyze/meta.yaml +++ b/recipes/bioconductor-mpranalyze/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b75748825f109b1050c03ed043f9fe8c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msa/meta.yaml b/recipes/bioconductor-msa/meta.yaml index 3f3483255cdc9..afc7223a4bbcb 100644 --- a/recipes/bioconductor-msa/meta.yaml +++ b/recipes/bioconductor-msa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 420454bb8b4b80059f3370245f73a55e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msd16s/meta.yaml b/recipes/bioconductor-msd16s/meta.yaml index e201a8669d7b5..c7c5d601e7ca7 100644 --- a/recipes/bioconductor-msd16s/meta.yaml +++ b/recipes/bioconductor-msd16s/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c6671e141bf8abb9df5fa623a5702fcb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msd16s/post-link.sh b/recipes/bioconductor-msd16s/post-link.sh index 7882c24010599..d74c92139ed89 100644 --- a/recipes/bioconductor-msd16s/post-link.sh +++ b/recipes/bioconductor-msd16s/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/msd16s_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/msd16s_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-msd16s/bioconductor-msd16s_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-msd16s/bioconductor-msd16s_1.4.0_src_all.tar.gz" ) MD5="c6671e141bf8abb9df5fa623a5702fcb" diff --git a/recipes/bioconductor-msdata/meta.yaml b/recipes/bioconductor-msdata/meta.yaml index 8a89cca91eee8..cf7be95523f34 100644 --- a/recipes/bioconductor-msdata/meta.yaml +++ b/recipes/bioconductor-msdata/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "0.24.0" %} +{% set version = "0.24.1" %} {% set name = "msdata" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 94f80d707b61b87c498cdb7f2a40ffbb + md5: 4f8f93fad60efa8606923e77651616bf build: number: 0 rpaths: diff --git a/recipes/bioconductor-msdata/post-link.sh b/recipes/bioconductor-msdata/post-link.sh index 2ec5778055392..7341e381dc080 100644 --- a/recipes/bioconductor-msdata/post-link.sh +++ b/recipes/bioconductor-msdata/post-link.sh @@ -1,11 +1,11 @@ #!/bin/bash -FN="msdata_0.24.0.tar.gz" +FN="msdata_0.24.1.tar.gz" URLS=( - "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/msdata_0.24.0.tar.gz" - "https://bioarchive.galaxyproject.org/msdata_0.24.0.tar.gz" - "https://depot.galaxyproject.org/software/bioconductor-msdata/bioconductor-msdata_0.24.0_src_all.tar.gz" + "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/msdata_0.24.1.tar.gz" + "https://bioarchive.galaxyproject.org/msdata_0.24.1.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-msdata/bioconductor-msdata_0.24.1_src_all.tar.gz" ) -MD5="94f80d707b61b87c498cdb7f2a40ffbb" +MD5="4f8f93fad60efa8606923e77651616bf" # Use a staging area in the conda dir rather than temp dirs, both to avoid # permission issues as well as to have things downloaded in a predictable diff --git a/recipes/bioconductor-msgbsr/meta.yaml b/recipes/bioconductor-msgbsr/meta.yaml index f5588150bc39b..d1f9866a73866 100644 --- a/recipes/bioconductor-msgbsr/meta.yaml +++ b/recipes/bioconductor-msgbsr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f69feed2ab2a4927775f9c0eb6d3c029 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msgfgui/meta.yaml b/recipes/bioconductor-msgfgui/meta.yaml index 454b7b29d94f0..626c0ecfdf4be 100644 --- a/recipes/bioconductor-msgfgui/meta.yaml +++ b/recipes/bioconductor-msgfgui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ff04d21ba7710e2ee76534fc6915d6b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msgfplus/meta.yaml b/recipes/bioconductor-msgfplus/meta.yaml index 5d8434aa37e0b..de52d4fc54f99 100644 --- a/recipes/bioconductor-msgfplus/meta.yaml +++ b/recipes/bioconductor-msgfplus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d05568404d2517ffef6c498d6b559d53 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -24,12 +24,12 @@ requirements: - 'bioconductor-mzid >=1.22.0,<1.23.0' - 'bioconductor-protgenerics >=1.16.0,<1.17.0' - r-base - - openjdk 8.* + - openjdk run: - 'bioconductor-mzid >=1.22.0,<1.23.0' - 'bioconductor-protgenerics >=1.16.0,<1.17.0' - r-base - - openjdk 8.* + - openjdk test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-msmb/meta.yaml b/recipes/bioconductor-msmb/meta.yaml index 039d2d002d938..4e866c31f56cb 100644 --- a/recipes/bioconductor-msmb/meta.yaml +++ b/recipes/bioconductor-msmb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8898fad9df534a2d3de0af0c74a5dfc5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msmb/post-link.sh b/recipes/bioconductor-msmb/post-link.sh index 0992c33a4ab43..cc122e4df0296 100644 --- a/recipes/bioconductor-msmb/post-link.sh +++ b/recipes/bioconductor-msmb/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MSMB_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/MSMB_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-msmb/bioconductor-msmb_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-msmb/bioconductor-msmb_1.2.0_src_all.tar.gz" ) MD5="8898fad9df534a2d3de0af0c74a5dfc5" diff --git a/recipes/bioconductor-msmseda/meta.yaml b/recipes/bioconductor-msmseda/meta.yaml index b65e231a32e6c..3bbc0f4f4fb17 100644 --- a/recipes/bioconductor-msmseda/meta.yaml +++ b/recipes/bioconductor-msmseda/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aa3ccb1fd5a87df729da090d5ee9b7f4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msmstests/meta.yaml b/recipes/bioconductor-msmstests/meta.yaml index 4ddf88c08cc6a..39b9ed6eeb88d 100644 --- a/recipes/bioconductor-msmstests/meta.yaml +++ b/recipes/bioconductor-msmstests/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cbc1d71ad96f24c31683d8f2a4518d15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msnbase/meta.yaml b/recipes/bioconductor-msnbase/meta.yaml index 91a1ae2304e76..3616aae46bc9e 100644 --- a/recipes/bioconductor-msnbase/meta.yaml +++ b/recipes/bioconductor-msnbase/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.10.0" %} +{% set version = "2.10.1" %} {% set name = "MSnbase" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: d34329ccde067334a4a729ae0d72dee5 + md5: ab8937ed38086b56d6e309363f0c47ed build: number: 0 rpaths: diff --git a/recipes/bioconductor-msnid/meta.yaml b/recipes/bioconductor-msnid/meta.yaml index c0b379d502b1f..17611417909e7 100644 --- a/recipes/bioconductor-msnid/meta.yaml +++ b/recipes/bioconductor-msnid/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.1" %} {% set name = "MSnID" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: a6c34153f93ba9c3120ca6df1e38deec + md5: 616eb099ccfc543bb5dd9a4ce70e3dcf build: number: 0 rpaths: diff --git a/recipes/bioconductor-mspurity/meta.yaml b/recipes/bioconductor-mspurity/meta.yaml index 0efa2d95609eb..fdb74cb94d7b3 100644 --- a/recipes/bioconductor-mspurity/meta.yaml +++ b/recipes/bioconductor-mspurity/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3c75ae8d5c3437d5193646273b393b3c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mspuritydata/meta.yaml b/recipes/bioconductor-mspuritydata/meta.yaml index 6a48b6b83c46d..105dda0a6a129 100644 --- a/recipes/bioconductor-mspuritydata/meta.yaml +++ b/recipes/bioconductor-mspuritydata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ae6f756fe49c343dac284309d67b26ac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mspuritydata/post-link.sh b/recipes/bioconductor-mspuritydata/post-link.sh index 04ffd5dd6ae67..31f0a660559aa 100644 --- a/recipes/bioconductor-mspuritydata/post-link.sh +++ b/recipes/bioconductor-mspuritydata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/msPurityData_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/msPurityData_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mspuritydata/bioconductor-mspuritydata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mspuritydata/bioconductor-mspuritydata_1.12.0_src_all.tar.gz" ) MD5="ae6f756fe49c343dac284309d67b26ac" diff --git a/recipes/bioconductor-msqc1/meta.yaml b/recipes/bioconductor-msqc1/meta.yaml index 2ab461f66c8d1..316f213d06a73 100644 --- a/recipes/bioconductor-msqc1/meta.yaml +++ b/recipes/bioconductor-msqc1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ceb2ef3c5998e786e3bc8233b0d2724f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msqc1/post-link.sh b/recipes/bioconductor-msqc1/post-link.sh index 28e844927e98f..68c2f2b472247 100644 --- a/recipes/bioconductor-msqc1/post-link.sh +++ b/recipes/bioconductor-msqc1/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/msqc1_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/msqc1_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-msqc1/bioconductor-msqc1_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-msqc1/bioconductor-msqc1_1.12.0_src_all.tar.gz" ) MD5="ceb2ef3c5998e786e3bc8233b0d2724f" diff --git a/recipes/bioconductor-msstats/meta.yaml b/recipes/bioconductor-msstats/meta.yaml index c94ce8446e95e..82831eaea95c4 100644 --- a/recipes/bioconductor-msstats/meta.yaml +++ b/recipes/bioconductor-msstats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7622d57810ca63c20b224a69b4b62f19 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msstatsbiodata/meta.yaml b/recipes/bioconductor-msstatsbiodata/meta.yaml index a58bbd11f4580..a144bfb28a424 100644 --- a/recipes/bioconductor-msstatsbiodata/meta.yaml +++ b/recipes/bioconductor-msstatsbiodata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a0a04b89a7eaee9c85a630483b296a0c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msstatsbiodata/post-link.sh b/recipes/bioconductor-msstatsbiodata/post-link.sh index a5adbdb16ed93..018fe85e26b73 100644 --- a/recipes/bioconductor-msstatsbiodata/post-link.sh +++ b/recipes/bioconductor-msstatsbiodata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MSstatsBioData_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/MSstatsBioData_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-msstatsbiodata/bioconductor-msstatsbiodata_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-msstatsbiodata/bioconductor-msstatsbiodata_1.6.0_src_all.tar.gz" ) MD5="a0a04b89a7eaee9c85a630483b296a0c" diff --git a/recipes/bioconductor-msstatsqc/meta.yaml b/recipes/bioconductor-msstatsqc/meta.yaml index 8fc9cec788f9d..15f81582ea3c3 100644 --- a/recipes/bioconductor-msstatsqc/meta.yaml +++ b/recipes/bioconductor-msstatsqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e73a4941dde9b2893295400a2a5a46fb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msstatsqcgui/meta.yaml b/recipes/bioconductor-msstatsqcgui/meta.yaml index 7632ff2146f4d..10e2d72f58247 100644 --- a/recipes/bioconductor-msstatsqcgui/meta.yaml +++ b/recipes/bioconductor-msstatsqcgui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1b035376687e76ad64bacf1d269f15b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-msstatstmt/meta.yaml b/recipes/bioconductor-msstatstmt/meta.yaml index 3974eba0ae689..1bb9d275f8807 100644 --- a/recipes/bioconductor-msstatstmt/meta.yaml +++ b/recipes/bioconductor-msstatstmt/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.1" %} +{% set version = "1.2.5" %} {% set name = "MSstatsTMT" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 18c6b877b211c95e9a0e3e189d7eab73 + md5: 86b9274db2ad39576875b14c8cf4e514 build: number: 0 rpaths: diff --git a/recipes/bioconductor-mta10probeset.db/meta.yaml b/recipes/bioconductor-mta10probeset.db/meta.yaml index e74e1fc9d82ff..9bae00ec90523 100644 --- a/recipes/bioconductor-mta10probeset.db/meta.yaml +++ b/recipes/bioconductor-mta10probeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 80ca03d68b6c9dd51d50122039b2d8ba build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mta10transcriptcluster.db/meta.yaml b/recipes/bioconductor-mta10transcriptcluster.db/meta.yaml index 002db766797ca..5e940ee5ffc58 100644 --- a/recipes/bioconductor-mta10transcriptcluster.db/meta.yaml +++ b/recipes/bioconductor-mta10transcriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 04cb3bf18fafd5bef3c4444d32df8bd0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mtbls2/meta.yaml b/recipes/bioconductor-mtbls2/meta.yaml index 35a3f547726a2..66b3400f02e87 100644 --- a/recipes/bioconductor-mtbls2/meta.yaml +++ b/recipes/bioconductor-mtbls2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c6b95b76c7aa21672c277100dbf75f19 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mtbls2/post-link.sh b/recipes/bioconductor-mtbls2/post-link.sh index e6b2c3ff94f9f..4453924d72302 100644 --- a/recipes/bioconductor-mtbls2/post-link.sh +++ b/recipes/bioconductor-mtbls2/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mtbls2_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/mtbls2_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mtbls2/bioconductor-mtbls2_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mtbls2/bioconductor-mtbls2_1.14.0_src_all.tar.gz" ) MD5="c6b95b76c7aa21672c277100dbf75f19" diff --git a/recipes/bioconductor-mtseeker/meta.yaml b/recipes/bioconductor-mtseeker/meta.yaml index 62a13ff2712b5..cb9bbd7d182dd 100644 --- a/recipes/bioconductor-mtseeker/meta.yaml +++ b/recipes/bioconductor-mtseeker/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e58ce97bc0d80e4200e8830fd9d6bf1b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -28,7 +28,7 @@ requirements: - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-gmapr >=1.26.0,<1.27.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' @@ -50,7 +50,7 @@ requirements: - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-gmapr >=1.26.0,<1.27.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' diff --git a/recipes/bioconductor-mtseekerdata/meta.yaml b/recipes/bioconductor-mtseekerdata/meta.yaml index 4e31a06d177ee..2448c25b53100 100644 --- a/recipes/bioconductor-mtseekerdata/meta.yaml +++ b/recipes/bioconductor-mtseekerdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f36216a2c91f9d02efbca8071367edc1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -23,7 +23,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-mtseeker >=1.2.0,<1.3.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' @@ -32,7 +32,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-mtseeker >=1.2.0,<1.3.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' diff --git a/recipes/bioconductor-mtseekerdata/post-link.sh b/recipes/bioconductor-mtseekerdata/post-link.sh index 80a5895da78b3..fd6400ed112c2 100644 --- a/recipes/bioconductor-mtseekerdata/post-link.sh +++ b/recipes/bioconductor-mtseekerdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MTseekerData_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/MTseekerData_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mtseekerdata/bioconductor-mtseekerdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mtseekerdata/bioconductor-mtseekerdata_1.2.0_src_all.tar.gz" ) MD5="f36216a2c91f9d02efbca8071367edc1" diff --git a/recipes/bioconductor-mu11ksuba.db/meta.yaml b/recipes/bioconductor-mu11ksuba.db/meta.yaml index b2e9f0ea279fb..5b7caa6a1425d 100644 --- a/recipes/bioconductor-mu11ksuba.db/meta.yaml +++ b/recipes/bioconductor-mu11ksuba.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2ed9098b7efa45430488d4c9f8df0750 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu11ksubacdf/meta.yaml b/recipes/bioconductor-mu11ksubacdf/meta.yaml index 6ea9d9af9e663..91f7bcc52cbee 100644 --- a/recipes/bioconductor-mu11ksubacdf/meta.yaml +++ b/recipes/bioconductor-mu11ksubacdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 52fb8ac56435775022fb62f40efafd22 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu11ksubaprobe/meta.yaml b/recipes/bioconductor-mu11ksubaprobe/meta.yaml index ce9adf3189dfd..b50fe01ac21dc 100644 --- a/recipes/bioconductor-mu11ksubaprobe/meta.yaml +++ b/recipes/bioconductor-mu11ksubaprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 813cd0750cca6ff0cfb696b83286177e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu11ksubb.db/meta.yaml b/recipes/bioconductor-mu11ksubb.db/meta.yaml index 89dd8506633ec..983007ffc097b 100644 --- a/recipes/bioconductor-mu11ksubb.db/meta.yaml +++ b/recipes/bioconductor-mu11ksubb.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 44bde347574efd353ae89f41c06ccf76 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu11ksubbcdf/meta.yaml b/recipes/bioconductor-mu11ksubbcdf/meta.yaml index 8a1f7f22fcdbf..3615744e79e3c 100644 --- a/recipes/bioconductor-mu11ksubbcdf/meta.yaml +++ b/recipes/bioconductor-mu11ksubbcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f9691ea74e19dfe57bf6cca6ed396947 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu11ksubbprobe/meta.yaml b/recipes/bioconductor-mu11ksubbprobe/meta.yaml index 8a9b898d10924..e4852d867b2b7 100644 --- a/recipes/bioconductor-mu11ksubbprobe/meta.yaml +++ b/recipes/bioconductor-mu11ksubbprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 28d162e18e4e16e3c6db47195d2ea0ac build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu15v1.db/meta.yaml b/recipes/bioconductor-mu15v1.db/meta.yaml index ee83fef898030..45d65622aa4f1 100644 --- a/recipes/bioconductor-mu15v1.db/meta.yaml +++ b/recipes/bioconductor-mu15v1.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e9297b5fe223b046bc65dc6ea0b4376d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu19ksuba.db/meta.yaml b/recipes/bioconductor-mu19ksuba.db/meta.yaml index 0e11c197a34c6..bb4b12893abe0 100644 --- a/recipes/bioconductor-mu19ksuba.db/meta.yaml +++ b/recipes/bioconductor-mu19ksuba.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 668c92eb1b9e2367c5a69dc8d0498cca build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu19ksubacdf/meta.yaml b/recipes/bioconductor-mu19ksubacdf/meta.yaml index 446e99f9e1679..cafbd0b05ad04 100644 --- a/recipes/bioconductor-mu19ksubacdf/meta.yaml +++ b/recipes/bioconductor-mu19ksubacdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 83a9e7a3bac665b655786e66dbd77848 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu19ksubb.db/meta.yaml b/recipes/bioconductor-mu19ksubb.db/meta.yaml index 7fac564b7c77d..a3c76fabe364b 100644 --- a/recipes/bioconductor-mu19ksubb.db/meta.yaml +++ b/recipes/bioconductor-mu19ksubb.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 54ffae3e05d9fd79caadf51954473b93 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu19ksubbcdf/meta.yaml b/recipes/bioconductor-mu19ksubbcdf/meta.yaml index 47282f6f9ba69..6b1e83610761e 100644 --- a/recipes/bioconductor-mu19ksubbcdf/meta.yaml +++ b/recipes/bioconductor-mu19ksubbcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 35e5ebcb4cb51950a85c1e3622bb39f0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu19ksubc.db/meta.yaml b/recipes/bioconductor-mu19ksubc.db/meta.yaml index 4b26c678a1ec8..8e3db4329f7ca 100644 --- a/recipes/bioconductor-mu19ksubc.db/meta.yaml +++ b/recipes/bioconductor-mu19ksubc.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0cb0abb16337b8acc9dd365f5225856c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu19ksubccdf/meta.yaml b/recipes/bioconductor-mu19ksubccdf/meta.yaml index 137d7f8ffaa41..a3c71cbc613d6 100644 --- a/recipes/bioconductor-mu19ksubccdf/meta.yaml +++ b/recipes/bioconductor-mu19ksubccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e53ef2716f88022e5e41e2cd857fc2a3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu22v3.db/meta.yaml b/recipes/bioconductor-mu22v3.db/meta.yaml index f0c24df0d90d1..9a8acfa8a1806 100644 --- a/recipes/bioconductor-mu22v3.db/meta.yaml +++ b/recipes/bioconductor-mu22v3.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 44aaebe909be9b0108256194c55cf6fb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu6500subacdf/meta.yaml b/recipes/bioconductor-mu6500subacdf/meta.yaml index 0530c212a3457..63b85a521e0db 100644 --- a/recipes/bioconductor-mu6500subacdf/meta.yaml +++ b/recipes/bioconductor-mu6500subacdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e72152fc4bae307e3858160e018b7f92 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu6500subbcdf/meta.yaml b/recipes/bioconductor-mu6500subbcdf/meta.yaml index fe15741e4594f..19725c6861840 100644 --- a/recipes/bioconductor-mu6500subbcdf/meta.yaml +++ b/recipes/bioconductor-mu6500subbcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5000bea2a018b4b6ec05cda111438bc1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu6500subccdf/meta.yaml b/recipes/bioconductor-mu6500subccdf/meta.yaml index 9a46592a31729..8d9d01dcb5a69 100644 --- a/recipes/bioconductor-mu6500subccdf/meta.yaml +++ b/recipes/bioconductor-mu6500subccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c7cbbe6c70a0a3ae11600ad6c0e540c1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mu6500subdcdf/meta.yaml b/recipes/bioconductor-mu6500subdcdf/meta.yaml index 7d7ffe4590032..0c9eec31c54e7 100644 --- a/recipes/bioconductor-mu6500subdcdf/meta.yaml +++ b/recipes/bioconductor-mu6500subdcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a614674e8bc60fefd8520dd25d45f8d0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mugaexampledata/meta.yaml b/recipes/bioconductor-mugaexampledata/meta.yaml index dbb029c9c9947..654eddfae718e 100644 --- a/recipes/bioconductor-mugaexampledata/meta.yaml +++ b/recipes/bioconductor-mugaexampledata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 307ef40b4459572843bf422be2dc998b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mugaexampledata/post-link.sh b/recipes/bioconductor-mugaexampledata/post-link.sh index 3319790a4d7f9..809e1ed016429 100644 --- a/recipes/bioconductor-mugaexampledata/post-link.sh +++ b/recipes/bioconductor-mugaexampledata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/MUGAExampleData_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/MUGAExampleData_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mugaexampledata/bioconductor-mugaexampledata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mugaexampledata/bioconductor-mugaexampledata_1.4.0_src_all.tar.gz" ) MD5="307ef40b4459572843bf422be2dc998b" diff --git a/recipes/bioconductor-mulcom/meta.yaml b/recipes/bioconductor-mulcom/meta.yaml index b69a72cf4169c..d6a975162f6b4 100644 --- a/recipes/bioconductor-mulcom/meta.yaml +++ b/recipes/bioconductor-mulcom/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 210fbbf76aae7912a33b7a95a6d86314 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mulder2012/meta.yaml b/recipes/bioconductor-mulder2012/meta.yaml index 73e344480b364..703bf46b748f4 100644 --- a/recipes/bioconductor-mulder2012/meta.yaml +++ b/recipes/bioconductor-mulder2012/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cf1ccb7133defdc49f889dfe9efabbf4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mulder2012/post-link.sh b/recipes/bioconductor-mulder2012/post-link.sh index 36748308f4e7e..40dd6a6580509 100644 --- a/recipes/bioconductor-mulder2012/post-link.sh +++ b/recipes/bioconductor-mulder2012/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Mulder2012_0.24.0.tar.gz" "https://bioarchive.galaxyproject.org/Mulder2012_0.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mulder2012/bioconductor-mulder2012_0.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mulder2012/bioconductor-mulder2012_0.24.0_src_all.tar.gz" ) MD5="cf1ccb7133defdc49f889dfe9efabbf4" diff --git a/recipes/bioconductor-multiassayexperiment/meta.yaml b/recipes/bioconductor-multiassayexperiment/meta.yaml index 2757301c1dce5..1eb52476648a4 100644 --- a/recipes/bioconductor-multiassayexperiment/meta.yaml +++ b/recipes/bioconductor-multiassayexperiment/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.10.0" %} +{% set version = "1.10.4" %} {% set name = "MultiAssayExperiment" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: df8cc8809c7657adb497cc963ff90cf6 + md5: 6467fe4e78f03cdb2b499add0f928241 build: number: 0 rpaths: diff --git a/recipes/bioconductor-multiclust/meta.yaml b/recipes/bioconductor-multiclust/meta.yaml index d2e1ab1503d96..ccf9dbe01455c 100644 --- a/recipes/bioconductor-multiclust/meta.yaml +++ b/recipes/bioconductor-multiclust/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0419d9b762cbf770200af0d422ffc92a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-multidataset/meta.yaml b/recipes/bioconductor-multidataset/meta.yaml index 2a89a04a3e55f..3d8542cd13eb8 100644 --- a/recipes/bioconductor-multidataset/meta.yaml +++ b/recipes/bioconductor-multidataset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 29d5353058ddf3b0be75aec607c05d7a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-multihiccompare/meta.yaml b/recipes/bioconductor-multihiccompare/meta.yaml index 1af62e52cca4d..d0b40e0699e86 100644 --- a/recipes/bioconductor-multihiccompare/meta.yaml +++ b/recipes/bioconductor-multihiccompare/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4030c762379a976b95076872876bf659 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-multimed/meta.yaml b/recipes/bioconductor-multimed/meta.yaml index 867e79202e9a4..01cd8be6d27f8 100644 --- a/recipes/bioconductor-multimed/meta.yaml +++ b/recipes/bioconductor-multimed/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d9ee95935c15445833065ac51918fd4d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-multimir/meta.yaml b/recipes/bioconductor-multimir/meta.yaml index bc988d1ff0d6e..fdaa0cbbd93f6 100644 --- a/recipes/bioconductor-multimir/meta.yaml +++ b/recipes/bioconductor-multimir/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: be190b22f4424ab912609f7b5bbcedac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-multiomicsviz/meta.yaml b/recipes/bioconductor-multiomicsviz/meta.yaml index 4ce5b232753eb..473b90ae29caf 100644 --- a/recipes/bioconductor-multiomicsviz/meta.yaml +++ b/recipes/bioconductor-multiomicsviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 27efea72517daffda09ad491d7781341 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-multiscan/meta.yaml b/recipes/bioconductor-multiscan/meta.yaml index 1a9867f0596b1..bc16e1b83777d 100644 --- a/recipes/bioconductor-multiscan/meta.yaml +++ b/recipes/bioconductor-multiscan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 55c6835dbb636b628ea63f5ec1f7bbe8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-multtest/meta.yaml b/recipes/bioconductor-multtest/meta.yaml index cec673c6427ae..d4b727d95735a 100644 --- a/recipes/bioconductor-multtest/meta.yaml +++ b/recipes/bioconductor-multtest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9a61cd841ac53057c3019f016535d785 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mus.musculus/meta.yaml b/recipes/bioconductor-mus.musculus/meta.yaml index f8fa0c2ac4d32..e86c9a077bcda 100644 --- a/recipes/bioconductor-mus.musculus/meta.yaml +++ b/recipes/bioconductor-mus.musculus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1b8defe64c2dd308a88d1ac7a4ce04b9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-muscle/meta.yaml b/recipes/bioconductor-muscle/meta.yaml index 8b7f424749bbb..4f9147aa4bd97 100644 --- a/recipes/bioconductor-muscle/meta.yaml +++ b/recipes/bioconductor-muscle/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bd068ea9ecafda73dc59d95186c23cd0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mutationalpatterns/meta.yaml b/recipes/bioconductor-mutationalpatterns/meta.yaml index 8633c717d7093..a9a86c76c2788 100644 --- a/recipes/bioconductor-mutationalpatterns/meta.yaml +++ b/recipes/bioconductor-mutationalpatterns/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 25087f2b88a9828eef9b62ba6245275a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mvcclass/meta.yaml b/recipes/bioconductor-mvcclass/meta.yaml index 8860d395ac014..c70ecb7bc380c 100644 --- a/recipes/bioconductor-mvcclass/meta.yaml +++ b/recipes/bioconductor-mvcclass/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ee30a4d2a083afcff0e7b9c3bd3e7fe6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mvoutdata/meta.yaml b/recipes/bioconductor-mvoutdata/meta.yaml index 58956485884bd..96125d23be469 100644 --- a/recipes/bioconductor-mvoutdata/meta.yaml +++ b/recipes/bioconductor-mvoutdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dee1616c6e51610b038b7df786676238 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mvoutdata/post-link.sh b/recipes/bioconductor-mvoutdata/post-link.sh index 2b95f4d1794e7..20f9db94cf804 100644 --- a/recipes/bioconductor-mvoutdata/post-link.sh +++ b/recipes/bioconductor-mvoutdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/mvoutData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/mvoutData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-mvoutdata/bioconductor-mvoutdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-mvoutdata/bioconductor-mvoutdata_1.20.0_src_all.tar.gz" ) MD5="dee1616c6e51610b038b7df786676238" diff --git a/recipes/bioconductor-mwastools/meta.yaml b/recipes/bioconductor-mwastools/meta.yaml index b945f81d1a4cf..338aeb467d4e7 100644 --- a/recipes/bioconductor-mwastools/meta.yaml +++ b/recipes/bioconductor-mwastools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6682a0abac0f768907754383a22bd954 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mwgcod.db/meta.yaml b/recipes/bioconductor-mwgcod.db/meta.yaml index b63a58a3b8388..7c2a5b1c383ae 100644 --- a/recipes/bioconductor-mwgcod.db/meta.yaml +++ b/recipes/bioconductor-mwgcod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3d6e2af6b05d6e07a212c043dc9d37c4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mygene/meta.yaml b/recipes/bioconductor-mygene/meta.yaml index 62debe95b45b1..3ed7dda5dfceb 100644 --- a/recipes/bioconductor-mygene/meta.yaml +++ b/recipes/bioconductor-mygene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0b83f62d78a6c3dca0bfd49c4b4a2abc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-myvariant/meta.yaml b/recipes/bioconductor-myvariant/meta.yaml index 676708d44de85..4202fb3e077b3 100644 --- a/recipes/bioconductor-myvariant/meta.yaml +++ b/recipes/bioconductor-myvariant/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3fd2a1cd530340e48ed29d1b6a0282fc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mzid/meta.yaml b/recipes/bioconductor-mzid/meta.yaml index 811c89d94b87f..70c70819561ef 100644 --- a/recipes/bioconductor-mzid/meta.yaml +++ b/recipes/bioconductor-mzid/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d3b509c2903fedb8bbd5498b7b619159 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-mzr/meta.yaml b/recipes/bioconductor-mzr/meta.yaml index 2ccb1210800ca..cdbaa171afdb2 100644 --- a/recipes/bioconductor-mzr/meta.yaml +++ b/recipes/bioconductor-mzr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0d04f2321954557784e8080983a7d0e6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nadfinder/meta.yaml b/recipes/bioconductor-nadfinder/meta.yaml index 5b59593debd27..daac4ec639b5c 100644 --- a/recipes/bioconductor-nadfinder/meta.yaml +++ b/recipes/bioconductor-nadfinder/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} {% set name = "NADfinder" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: c04d0d9e049f2c075f6299fbdc14c03b + md5: 967dd5808350103047e5547d03e26c38 build: number: 0 rpaths: diff --git a/recipes/bioconductor-nanostringdiff/meta.yaml b/recipes/bioconductor-nanostringdiff/meta.yaml index db39de58ad855..e3b13489c1f39 100644 --- a/recipes/bioconductor-nanostringdiff/meta.yaml +++ b/recipes/bioconductor-nanostringdiff/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4e7839ffa608368251d100a3177bd495 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nanostringqcpro/meta.yaml b/recipes/bioconductor-nanostringqcpro/meta.yaml index 1817122f5de41..98f7cd173a5b7 100644 --- a/recipes/bioconductor-nanostringqcpro/meta.yaml +++ b/recipes/bioconductor-nanostringqcpro/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a2bf9ee2b3bdfc8baa6e60b24465811d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nanotator/meta.yaml b/recipes/bioconductor-nanotator/meta.yaml index adb2f265da1ef..b493cb1c69241 100644 --- a/recipes/bioconductor-nanotator/meta.yaml +++ b/recipes/bioconductor-nanotator/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fc74467fa96a2c4329e8494eb6caf9ea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nanotubes/meta.yaml b/recipes/bioconductor-nanotubes/meta.yaml index 90893f82daea5..d9f5d3e133b2e 100644 --- a/recipes/bioconductor-nanotubes/meta.yaml +++ b/recipes/bioconductor-nanotubes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6f54f293086643f47c81eea20f55f165 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nanotubes/post-link.sh b/recipes/bioconductor-nanotubes/post-link.sh index d4be505b1ec0a..54b8c720ea51f 100644 --- a/recipes/bioconductor-nanotubes/post-link.sh +++ b/recipes/bioconductor-nanotubes/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/nanotubes_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/nanotubes_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-nanotubes/bioconductor-nanotubes_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-nanotubes/bioconductor-nanotubes_1.0.0_src_all.tar.gz" ) MD5="6f54f293086643f47c81eea20f55f165" diff --git a/recipes/bioconductor-narrowpeaks/meta.yaml b/recipes/bioconductor-narrowpeaks/meta.yaml index 8d9f2588b97ac..e55390171be80 100644 --- a/recipes/bioconductor-narrowpeaks/meta.yaml +++ b/recipes/bioconductor-narrowpeaks/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5964cd4667e6bb6dafba34e392a6b835 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nbamseq/meta.yaml b/recipes/bioconductor-nbamseq/meta.yaml index a5cf71700f255..3d868b81dfbb4 100644 --- a/recipes/bioconductor-nbamseq/meta.yaml +++ b/recipes/bioconductor-nbamseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d3149d0936dee0b074c613e4363f64c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nbsplice/meta.yaml b/recipes/bioconductor-nbsplice/meta.yaml index 7c20ec386068e..202afc0eb1a43 100644 --- a/recipes/bioconductor-nbsplice/meta.yaml +++ b/recipes/bioconductor-nbsplice/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.1" %} {% set name = "NBSplice" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 497fa5cb8bfe4c1be5f6e4712c3e8ce3 + md5: 4282dfb4bea9ffe49893c07c97e2b5e7 build: number: 0 rpaths: diff --git a/recipes/bioconductor-ncdfflow/meta.yaml b/recipes/bioconductor-ncdfflow/meta.yaml index 819730a86850c..356cf72a856ef 100644 --- a/recipes/bioconductor-ncdfflow/meta.yaml +++ b/recipes/bioconductor-ncdfflow/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.30.0" %} +{% set version = "2.30.1" %} {% set name = "ncdfFlow" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 9ebbdc3deecbb3ecf369719d36b2e96c + md5: 559d7f7d0482eb47e056c5fba2311b77 build: number: 0 rpaths: diff --git a/recipes/bioconductor-ncigraph/meta.yaml b/recipes/bioconductor-ncigraph/meta.yaml index 1019d24c749bd..40592df4d0720 100644 --- a/recipes/bioconductor-ncigraph/meta.yaml +++ b/recipes/bioconductor-ncigraph/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0bcb95b9449cc4451fcf113b5f1a3b10 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ncigraphdata/meta.yaml b/recipes/bioconductor-ncigraphdata/meta.yaml index 61bc1c0b0e892..113051e37c1e9 100644 --- a/recipes/bioconductor-ncigraphdata/meta.yaml +++ b/recipes/bioconductor-ncigraphdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b69030f40d2818cbd1c004d33403a653 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ncigraphdata/post-link.sh b/recipes/bioconductor-ncigraphdata/post-link.sh index 12ee87a47b8b1..b749ddf96c79f 100644 --- a/recipes/bioconductor-ncigraphdata/post-link.sh +++ b/recipes/bioconductor-ncigraphdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/NCIgraphData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/NCIgraphData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ncigraphdata/bioconductor-ncigraphdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ncigraphdata/bioconductor-ncigraphdata_1.20.0_src_all.tar.gz" ) MD5="b69030f40d2818cbd1c004d33403a653" diff --git a/recipes/bioconductor-ndexr/meta.yaml b/recipes/bioconductor-ndexr/meta.yaml index 8ad0188ff7d8b..4c3e1611138a9 100644 --- a/recipes/bioconductor-ndexr/meta.yaml +++ b/recipes/bioconductor-ndexr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5162ec97e81196a65a256f1f78783baf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-neighbornet/meta.yaml b/recipes/bioconductor-neighbornet/meta.yaml index 0d9e5ff611a57..8a7fa5dcb22af 100644 --- a/recipes/bioconductor-neighbornet/meta.yaml +++ b/recipes/bioconductor-neighbornet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 678c606cc75df11a475c99688a809b11 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nem/meta.yaml b/recipes/bioconductor-nem/meta.yaml index 894c08370b3e3..afe0c1c8edde5 100644 --- a/recipes/bioconductor-nem/meta.yaml +++ b/recipes/bioconductor-nem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 26c590b60db3f910b797964eba70b38d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nestlink/meta.yaml b/recipes/bioconductor-nestlink/meta.yaml index 5b5d29f3908e7..d0ac9123ec520 100644 --- a/recipes/bioconductor-nestlink/meta.yaml +++ b/recipes/bioconductor-nestlink/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f71e0add07a81dd57fb97103af33762f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nestlink/post-link.sh b/recipes/bioconductor-nestlink/post-link.sh index f1c1975ebd0ff..1cb0aa952aba7 100644 --- a/recipes/bioconductor-nestlink/post-link.sh +++ b/recipes/bioconductor-nestlink/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/NestLink_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/NestLink_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-nestlink/bioconductor-nestlink_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-nestlink/bioconductor-nestlink_1.0.0_src_all.tar.gz" ) MD5="f71e0add07a81dd57fb97103af33762f" diff --git a/recipes/bioconductor-netbenchmark/meta.yaml b/recipes/bioconductor-netbenchmark/meta.yaml index f44e6f0175877..72e4bf9508417 100644 --- a/recipes/bioconductor-netbenchmark/meta.yaml +++ b/recipes/bioconductor-netbenchmark/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a1b4608795a70e022d26aa7c5c34a6d2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-netbiov/meta.yaml b/recipes/bioconductor-netbiov/meta.yaml index 81cdb9e813907..7fc52ffa2449b 100644 --- a/recipes/bioconductor-netbiov/meta.yaml +++ b/recipes/bioconductor-netbiov/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ccc0ab1d17b66fabdfa2ea927353e361 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-netboost/meta.yaml b/recipes/bioconductor-netboost/meta.yaml index ede8859641c3e..f7f98639b78bf 100644 --- a/recipes/bioconductor-netboost/meta.yaml +++ b/recipes/bioconductor-netboost/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eca9de5dc79b990dbac1e08f0716492d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -28,7 +28,6 @@ requirements: - r-rcpp - r-rcppparallel - r-wgcna - - perl run: - 'bioconductor-impute >=1.58.0,<1.59.0' - r-base @@ -38,7 +37,6 @@ requirements: - r-rcpp - r-rcppparallel - r-wgcna - - perl build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-nethet/meta.yaml b/recipes/bioconductor-nethet/meta.yaml index bd98d6e18da17..e710638836ef0 100644 --- a/recipes/bioconductor-nethet/meta.yaml +++ b/recipes/bioconductor-nethet/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.15.0" %} +{% set version = "1.16.1" %} {% set name = "nethet" %} {% set bioc = "3.9" %} @@ -10,13 +10,13 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 9bed54881788cf300de6032684c993bf + md5: 5412c0920d7eb6ca174d5d4969ea2cae build: number: 0 rpaths: - lib/R/lib/ - lib/ -# Suggests: knitr, xtable, BiocStyle +# Suggests: knitr, xtable, BiocStyle, testthat requirements: host: - 'bioconductor-limma >=3.40.0,<3.41.0' diff --git a/recipes/bioconductor-netpathminer/meta.yaml b/recipes/bioconductor-netpathminer/meta.yaml index 63795ee686f69..ae63dfad886a9 100644 --- a/recipes/bioconductor-netpathminer/meta.yaml +++ b/recipes/bioconductor-netpathminer/meta.yaml @@ -12,8 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b5229cee01ad66180ee86c8a50ee9d03 build: - number: 0 - skip: True # [osx] + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -23,13 +22,9 @@ requirements: host: - r-base - 'r-igraph >=1.0' - - libxml2 - - libsbml >=5.5 run: - r-base - 'r-igraph >=1.0' - - libxml2 - - libsbml >=5.5 build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-netprior/meta.yaml b/recipes/bioconductor-netprior/meta.yaml index e7400140ba4a5..8944137a79882 100644 --- a/recipes/bioconductor-netprior/meta.yaml +++ b/recipes/bioconductor-netprior/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a09b310b2afd257aa263df687c15e0c4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-netreg/meta.yaml b/recipes/bioconductor-netreg/meta.yaml index 5e10320715bc1..805d048cdf85a 100644 --- a/recipes/bioconductor-netreg/meta.yaml +++ b/recipes/bioconductor-netreg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3577e49e7a74fac264e70a907d4834c9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-netresponse/meta.yaml b/recipes/bioconductor-netresponse/meta.yaml index 9b2008671ede6..4c23c759d6484 100644 --- a/recipes/bioconductor-netresponse/meta.yaml +++ b/recipes/bioconductor-netresponse/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c0ad8cb4cdef69e676af176c72cf9cac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-netsam/meta.yaml b/recipes/bioconductor-netsam/meta.yaml index e192e431f0b8c..7b95ddf4fd216 100644 --- a/recipes/bioconductor-netsam/meta.yaml +++ b/recipes/bioconductor-netsam/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ab2e72fd048e17cd4f19366c2851c433 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-netsmooth/meta.yaml b/recipes/bioconductor-netsmooth/meta.yaml index dd51788d4d2f3..373f2b657ba28 100644 --- a/recipes/bioconductor-netsmooth/meta.yaml +++ b/recipes/bioconductor-netsmooth/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c53bbdefc35f6169ed76bf30ad1cf686 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-networkbma/meta.yaml b/recipes/bioconductor-networkbma/meta.yaml index 708bb69110db2..3939a04c5abd8 100644 --- a/recipes/bioconductor-networkbma/meta.yaml +++ b/recipes/bioconductor-networkbma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c4412287f245abd27fad8563da668e11 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -26,7 +26,6 @@ requirements: - 'r-rcpp >=0.10.3' - 'r-rcpparmadillo >=0.3.810.2' - 'r-rcppeigen >=0.3.1.2.1' - - liblapack run: - r-base - r-bh @@ -35,7 +34,6 @@ requirements: - 'r-rcpp >=0.10.3' - 'r-rcpparmadillo >=0.3.810.2' - 'r-rcppeigen >=0.3.1.2.1' - - liblapack build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-neve2006/meta.yaml b/recipes/bioconductor-neve2006/meta.yaml index 6c267c9c7222d..517e1edbe499e 100644 --- a/recipes/bioconductor-neve2006/meta.yaml +++ b/recipes/bioconductor-neve2006/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1649911c89a1d20393bd58b3376e622d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-neve2006/post-link.sh b/recipes/bioconductor-neve2006/post-link.sh index 16106854d2605..33f5bdcc58c6d 100644 --- a/recipes/bioconductor-neve2006/post-link.sh +++ b/recipes/bioconductor-neve2006/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Neve2006_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/Neve2006_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-neve2006/bioconductor-neve2006_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-neve2006/bioconductor-neve2006_0.22.0_src_all.tar.gz" ) MD5="1649911c89a1d20393bd58b3376e622d" diff --git a/recipes/bioconductor-ngscopy/meta.yaml b/recipes/bioconductor-ngscopy/meta.yaml index b71fa8c30c56d..7f0919081dddc 100644 --- a/recipes/bioconductor-ngscopy/meta.yaml +++ b/recipes/bioconductor-ngscopy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b8b9721f675895d17f74e4a40db36eb2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ngscopydata/meta.yaml b/recipes/bioconductor-ngscopydata/meta.yaml index c534416a4af23..a9e0fb3d7f78b 100644 --- a/recipes/bioconductor-ngscopydata/meta.yaml +++ b/recipes/bioconductor-ngscopydata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a1ad1b18cdab0cb0f60674d0482e3e6b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ngscopydata/post-link.sh b/recipes/bioconductor-ngscopydata/post-link.sh index 19c5b77e6b1af..94f54ceba61ed 100644 --- a/recipes/bioconductor-ngscopydata/post-link.sh +++ b/recipes/bioconductor-ngscopydata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/NGScopyData_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/NGScopyData_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ngscopydata/bioconductor-ngscopydata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ngscopydata/bioconductor-ngscopydata_1.4.0_src_all.tar.gz" ) MD5="a1ad1b18cdab0cb0f60674d0482e3e6b" diff --git a/recipes/bioconductor-ngsreports/meta.yaml b/recipes/bioconductor-ngsreports/meta.yaml index c47b082aaa3c8..adeba6df46fc9 100644 --- a/recipes/bioconductor-ngsreports/meta.yaml +++ b/recipes/bioconductor-ngsreports/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 275e9a8d91e3a30bbd0362450d9a8cf4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nnnorm/meta.yaml b/recipes/bioconductor-nnnorm/meta.yaml index 04f8e19438808..3a88b1b81dcf2 100644 --- a/recipes/bioconductor-nnnorm/meta.yaml +++ b/recipes/bioconductor-nnnorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a1dd8fef52c92c47e1bc17ca0fe5c823 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-noiseq/meta.yaml b/recipes/bioconductor-noiseq/meta.yaml index 43cd21601bfd7..90fa5034a6628 100644 --- a/recipes/bioconductor-noiseq/meta.yaml +++ b/recipes/bioconductor-noiseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2211009273dbb9def27fab7612bf5ee7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nondetects/meta.yaml b/recipes/bioconductor-nondetects/meta.yaml index b5cef1f763961..23cd00f1c5f38 100644 --- a/recipes/bioconductor-nondetects/meta.yaml +++ b/recipes/bioconductor-nondetects/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6ed082936ef8d168c1bb04cb44def8df build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-normalize450k/meta.yaml b/recipes/bioconductor-normalize450k/meta.yaml index baf7e9812ab96..1c8b93d9007ef 100644 --- a/recipes/bioconductor-normalize450k/meta.yaml +++ b/recipes/bioconductor-normalize450k/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 28b62cd9b5c4cf1b1e2b02e9043e35fa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-normalyzerde/meta.yaml b/recipes/bioconductor-normalyzerde/meta.yaml index 824cff6938067..379007439562a 100644 --- a/recipes/bioconductor-normalyzerde/meta.yaml +++ b/recipes/bioconductor-normalyzerde/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 670b920cccf0189ef5a6ad4a6bce3988 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-normqpcr/build.sh b/recipes/bioconductor-normqpcr/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-normqpcr/build.sh +++ b/recipes/bioconductor-normqpcr/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-normqpcr/meta.yaml b/recipes/bioconductor-normqpcr/meta.yaml index b06a5b60467b3..faff337a6f999 100644 --- a/recipes/bioconductor-normqpcr/meta.yaml +++ b/recipes/bioconductor-normqpcr/meta.yaml @@ -12,12 +12,19 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9851470e31655277db61d1a4e42b965e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-readqpcr >=1.30.0,<1.31.0' @@ -32,7 +39,7 @@ requirements: - r-rcolorbrewer test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: LGPL-3 diff --git a/recipes/bioconductor-normr/meta.yaml b/recipes/bioconductor-normr/meta.yaml index 00845243d0058..272ecfac774fd 100644 --- a/recipes/bioconductor-normr/meta.yaml +++ b/recipes/bioconductor-normr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d7a14e44272acd117020c25ebfccfd08 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-norway981.db/meta.yaml b/recipes/bioconductor-norway981.db/meta.yaml index 9955b0b1d5f4f..8306489f09110 100644 --- a/recipes/bioconductor-norway981.db/meta.yaml +++ b/recipes/bioconductor-norway981.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 85367390919bba9018438585e59fbb87 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-npgsea/meta.yaml b/recipes/bioconductor-npgsea/meta.yaml index bb1a8eca5f732..aea05e654cb97 100644 --- a/recipes/bioconductor-npgsea/meta.yaml +++ b/recipes/bioconductor-npgsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e52fe0ffeaaa40b3e988dd4550f99052 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ntw/meta.yaml b/recipes/bioconductor-ntw/meta.yaml index 4e0e052f49d12..012595ca9a4fa 100644 --- a/recipes/bioconductor-ntw/meta.yaml +++ b/recipes/bioconductor-ntw/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e76680fac1736cf1e010febd204d5300 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nucleosim/meta.yaml b/recipes/bioconductor-nucleosim/meta.yaml index 4d375791d1e3c..095971560778c 100644 --- a/recipes/bioconductor-nucleosim/meta.yaml +++ b/recipes/bioconductor-nucleosim/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a7c5dacf53ecce0dd78991928b9656c5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nucler/meta.yaml b/recipes/bioconductor-nucler/meta.yaml index 68443d59adb55..1b3aa89f324e6 100644 --- a/recipes/bioconductor-nucler/meta.yaml +++ b/recipes/bioconductor-nucler/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 03152cac4449fffd5ebda5bc4f2fa849 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nucpos/meta.yaml b/recipes/bioconductor-nucpos/meta.yaml index 91af9c3eb8c5f..5a0b38f0d514f 100644 --- a/recipes/bioconductor-nucpos/meta.yaml +++ b/recipes/bioconductor-nucpos/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ae37dce2a611262d22eb1fe3c7dfb15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nugohs1a520180.db/meta.yaml b/recipes/bioconductor-nugohs1a520180.db/meta.yaml index 596eea68e62f9..ee5df78a84634 100644 --- a/recipes/bioconductor-nugohs1a520180.db/meta.yaml +++ b/recipes/bioconductor-nugohs1a520180.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f83701b35b07e69e1ad503b546bb5eaf build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nugohs1a520180cdf/meta.yaml b/recipes/bioconductor-nugohs1a520180cdf/meta.yaml index 130452d0f1a55..deeab83a01883 100644 --- a/recipes/bioconductor-nugohs1a520180cdf/meta.yaml +++ b/recipes/bioconductor-nugohs1a520180cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: aa152658a4a801cc0edb552a98aee841 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nugohs1a520180probe/meta.yaml b/recipes/bioconductor-nugohs1a520180probe/meta.yaml index e3ba86650aa1b..c7cfc6d3bd6e2 100644 --- a/recipes/bioconductor-nugohs1a520180probe/meta.yaml +++ b/recipes/bioconductor-nugohs1a520180probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6acf20ac4a799eaae97d0a64426d6ac3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nugomm1a520177.db/meta.yaml b/recipes/bioconductor-nugomm1a520177.db/meta.yaml index 30f1cd9e61644..f2b2954b03337 100644 --- a/recipes/bioconductor-nugomm1a520177.db/meta.yaml +++ b/recipes/bioconductor-nugomm1a520177.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 99f69ea2cbb80a79bedee99e3d726e50 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nugomm1a520177cdf/meta.yaml b/recipes/bioconductor-nugomm1a520177cdf/meta.yaml index d86d5a0903d24..bf85407d30280 100644 --- a/recipes/bioconductor-nugomm1a520177cdf/meta.yaml +++ b/recipes/bioconductor-nugomm1a520177cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fc60c2018580decaea30f09de55142fb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nugomm1a520177probe/meta.yaml b/recipes/bioconductor-nugomm1a520177probe/meta.yaml index 8e0f5712d77c5..d25c14936a738 100644 --- a/recipes/bioconductor-nugomm1a520177probe/meta.yaml +++ b/recipes/bioconductor-nugomm1a520177probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7fa974389ad2be6ebda8810496221a9b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-nupop/meta.yaml b/recipes/bioconductor-nupop/meta.yaml index 9fb52e99d44cc..0704259eccdc3 100644 --- a/recipes/bioconductor-nupop/meta.yaml +++ b/recipes/bioconductor-nupop/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2f2469ea1cc2c7a36a3ebe6abc8cfe28 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-occugene/meta.yaml b/recipes/bioconductor-occugene/meta.yaml index cc7d7b82ac627..fa7a45a480764 100644 --- a/recipes/bioconductor-occugene/meta.yaml +++ b/recipes/bioconductor-occugene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f962202fd42a1aa9933fe50bacbdef7d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ocplus/meta.yaml b/recipes/bioconductor-ocplus/meta.yaml index 497f245616261..9a07673c82255 100644 --- a/recipes/bioconductor-ocplus/meta.yaml +++ b/recipes/bioconductor-ocplus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 67aa4e3c2f906fb79a70714819df5e13 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oct4/meta.yaml b/recipes/bioconductor-oct4/meta.yaml index bf88c80942d32..642b12b02c8f6 100644 --- a/recipes/bioconductor-oct4/meta.yaml +++ b/recipes/bioconductor-oct4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4258694f3a51f0723ee90a5cdc241d03 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oct4/post-link.sh b/recipes/bioconductor-oct4/post-link.sh index c75291f6124b4..73788500124a8 100644 --- a/recipes/bioconductor-oct4/post-link.sh +++ b/recipes/bioconductor-oct4/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/oct4_1.0.0.tar.gz" "https://bioarchive.galaxyproject.org/oct4_1.0.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-oct4/bioconductor-oct4_1.0.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-oct4/bioconductor-oct4_1.0.0_src_all.tar.gz" ) MD5="4258694f3a51f0723ee90a5cdc241d03" diff --git a/recipes/bioconductor-odseq/meta.yaml b/recipes/bioconductor-odseq/meta.yaml index 4192733c9f598..d516ab02c09d2 100644 --- a/recipes/bioconductor-odseq/meta.yaml +++ b/recipes/bioconductor-odseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7b25fb80682d5695daa2562bafa1987d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ogsa/meta.yaml b/recipes/bioconductor-ogsa/meta.yaml index 531c8c7666aac..1d044b7983783 100644 --- a/recipes/bioconductor-ogsa/meta.yaml +++ b/recipes/bioconductor-ogsa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ea8ef4b05643bef784d87d23ffa04d50 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oligo/meta.yaml b/recipes/bioconductor-oligo/meta.yaml index 05afcd143c083..e5bafe5bc1ad6 100644 --- a/recipes/bioconductor-oligo/meta.yaml +++ b/recipes/bioconductor-oligo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d0d6c5b97dfe4ab1811da5c58d3cad1b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oligoclasses/meta.yaml b/recipes/bioconductor-oligoclasses/meta.yaml index 28fd4a0051b5d..a19e96508da60 100644 --- a/recipes/bioconductor-oligoclasses/meta.yaml +++ b/recipes/bioconductor-oligoclasses/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f7ddb837c47f2126caea204d7cf0deb5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oligodata/meta.yaml b/recipes/bioconductor-oligodata/meta.yaml index 8f81b0d6c3f44..42f7920ffdfbf 100644 --- a/recipes/bioconductor-oligodata/meta.yaml +++ b/recipes/bioconductor-oligodata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9625cfd4b31bb575c4029a0632a7ee12 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-olin/meta.yaml b/recipes/bioconductor-olin/meta.yaml index 0fec1dd3d24a4..ba077a9a7c815 100644 --- a/recipes/bioconductor-olin/meta.yaml +++ b/recipes/bioconductor-olin/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3853f23caccdf30142ec1c85b4d9a47b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-olingui/meta.yaml b/recipes/bioconductor-olingui/meta.yaml index 6f71c3fe5d376..194372bcf6f65 100644 --- a/recipes/bioconductor-olingui/meta.yaml +++ b/recipes/bioconductor-olingui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: de501564169222861b7036ba2516ad07 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-omadb/meta.yaml b/recipes/bioconductor-omadb/meta.yaml index 2e8175e8b1a67..5bdc50f7e9718 100644 --- a/recipes/bioconductor-omadb/meta.yaml +++ b/recipes/bioconductor-omadb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 04d5c2a7123cc04e31e0a3c4c0f8eac2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-omicade4/meta.yaml b/recipes/bioconductor-omicade4/meta.yaml index 0081efbf54d65..42af36e8790cb 100644 --- a/recipes/bioconductor-omicade4/meta.yaml +++ b/recipes/bioconductor-omicade4/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.24.0" %} +{% set version = "1.24.1" %} {% set name = "omicade4" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: fd3f9e91dd3b5fbd13dd938232348e50 + md5: 4f693891d6b1843afaa614b19ce43276 build: number: 0 rpaths: diff --git a/recipes/bioconductor-omiccircos/meta.yaml b/recipes/bioconductor-omiccircos/meta.yaml index 877c72345ff52..95ee3d7ab038d 100644 --- a/recipes/bioconductor-omiccircos/meta.yaml +++ b/recipes/bioconductor-omiccircos/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9d3312b4108c9266549045b04bbdba88 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-omicplotr/meta.yaml b/recipes/bioconductor-omicplotr/meta.yaml index 6753e2e3c5006..c4d14e1b984c4 100644 --- a/recipes/bioconductor-omicplotr/meta.yaml +++ b/recipes/bioconductor-omicplotr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3ab083839f9b7efdfd632b9204eb7288 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-omicrexposome/meta.yaml b/recipes/bioconductor-omicrexposome/meta.yaml index 6cb3b9dd93ebb..2f3a1838470f9 100644 --- a/recipes/bioconductor-omicrexposome/meta.yaml +++ b/recipes/bioconductor-omicrexposome/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b6f376d1a54b397d8ae243ecdfe6142b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-omicslonda/meta.yaml b/recipes/bioconductor-omicslonda/meta.yaml index 552cf99513c1a..96598193237f7 100644 --- a/recipes/bioconductor-omicslonda/meta.yaml +++ b/recipes/bioconductor-omicslonda/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f67896a0ef0785819dc9642850235b15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-omicsmarker/meta.yaml b/recipes/bioconductor-omicsmarker/meta.yaml index 9799ec570532e..26601e422abec 100644 --- a/recipes/bioconductor-omicsmarker/meta.yaml +++ b/recipes/bioconductor-omicsmarker/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9c82a60dce4f945966d2ba6fd761ecb3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-omicspca/build.sh b/recipes/bioconductor-omicspca/build.sh index c1d13421f5f1e..4b4a73a150a8f 100644 --- a/recipes/bioconductor-omicspca/build.sh +++ b/recipes/bioconductor-omicspca/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-omicspca/meta.yaml b/recipes/bioconductor-omicspca/meta.yaml index 63ca059318d7d..6e019be63f981 100644 --- a/recipes/bioconductor-omicspca/meta.yaml +++ b/recipes/bioconductor-omicspca/meta.yaml @@ -12,13 +12,20 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e69ae22e13ed95a9060126f90b5ecbd0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic # Suggests: knitr, RUnit, BiocGenerics requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-helloranges >=1.10.0,<1.11.0' @@ -75,7 +82,7 @@ requirements: - r-tidyr test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-3 @@ -85,4 +92,5 @@ extra: name: bioconductor-omicspca path: recipes/bioconductor-omicspca version: 1.0.0 - + container: + extended-base: true diff --git a/recipes/bioconductor-omicspcadata/meta.yaml b/recipes/bioconductor-omicspcadata/meta.yaml index 4416386c265e4..339d6b200e729 100644 --- a/recipes/bioconductor-omicspcadata/meta.yaml +++ b/recipes/bioconductor-omicspcadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8edbe12b716d34eb42783e0b327582bf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-omicspcadata/post-link.sh b/recipes/bioconductor-omicspcadata/post-link.sh index 5c0afcb91e7aa..8f65d7f53e975 100644 --- a/recipes/bioconductor-omicspcadata/post-link.sh +++ b/recipes/bioconductor-omicspcadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/OMICsPCAdata_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/OMICsPCAdata_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-omicspcadata/bioconductor-omicspcadata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-omicspcadata/bioconductor-omicspcadata_1.2.0_src_all.tar.gz" ) MD5="8edbe12b716d34eb42783e0b327582bf" diff --git a/recipes/bioconductor-omicsprint/meta.yaml b/recipes/bioconductor-omicsprint/meta.yaml index d37831e225f73..290bdee7ad779 100644 --- a/recipes/bioconductor-omicsprint/meta.yaml +++ b/recipes/bioconductor-omicsprint/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2021c5dae6aac2e7d35b1ddafe15135c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-onassis/meta.yaml b/recipes/bioconductor-onassis/meta.yaml index 06742399b9f08..8859340ad6f95 100644 --- a/recipes/bioconductor-onassis/meta.yaml +++ b/recipes/bioconductor-onassis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 49ba45c496aa91382326605371c0022d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-onassisjavalibs/meta.yaml b/recipes/bioconductor-onassisjavalibs/meta.yaml index ddaebe9b6e7ac..7eeb17f0d8383 100644 --- a/recipes/bioconductor-onassisjavalibs/meta.yaml +++ b/recipes/bioconductor-onassisjavalibs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ec733ed33c8932261fc34adaad85d038 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-onassisjavalibs/post-link.sh b/recipes/bioconductor-onassisjavalibs/post-link.sh index 09422c138da4a..97a984029dca2 100644 --- a/recipes/bioconductor-onassisjavalibs/post-link.sh +++ b/recipes/bioconductor-onassisjavalibs/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/OnassisJavaLibs_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/OnassisJavaLibs_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-onassisjavalibs/bioconductor-onassisjavalibs_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-onassisjavalibs/bioconductor-onassisjavalibs_1.6.0_src_all.tar.gz" ) MD5="ec733ed33c8932261fc34adaad85d038" diff --git a/recipes/bioconductor-oncomix/meta.yaml b/recipes/bioconductor-oncomix/meta.yaml index 905ea0644e178..377b30f33d722 100644 --- a/recipes/bioconductor-oncomix/meta.yaml +++ b/recipes/bioconductor-oncomix/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dc2814bcbc50ab49ba1b907cddb72e40 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oncoscore/meta.yaml b/recipes/bioconductor-oncoscore/meta.yaml index c6c4d288e1922..3622602a17fbd 100644 --- a/recipes/bioconductor-oncoscore/meta.yaml +++ b/recipes/bioconductor-oncoscore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bdf73cdd63364222c25bc2da53f68684 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oncosimulr/meta.yaml b/recipes/bioconductor-oncosimulr/meta.yaml index 2be8c45bc61cb..1a5b9b5c96cab 100644 --- a/recipes/bioconductor-oncosimulr/meta.yaml +++ b/recipes/bioconductor-oncosimulr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ad7ec9aa5aa85b0e0c961a23adf441ab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-onesense/meta.yaml b/recipes/bioconductor-onesense/meta.yaml index 7344a4f931ef8..241dbd0ab39f7 100644 --- a/recipes/bioconductor-onesense/meta.yaml +++ b/recipes/bioconductor-onesense/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 54a7031cad9942f3de0ced671a2e7c5c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-onlinefdr/meta.yaml b/recipes/bioconductor-onlinefdr/meta.yaml index 0c16b722e4ee1..545ab90aadefc 100644 --- a/recipes/bioconductor-onlinefdr/meta.yaml +++ b/recipes/bioconductor-onlinefdr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8c0cc1ff5c7853c657c14a291fa3c130 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ontoproc/meta.yaml b/recipes/bioconductor-ontoproc/meta.yaml index 894c32adcca3d..66834bc4762c0 100644 --- a/recipes/bioconductor-ontoproc/meta.yaml +++ b/recipes/bioconductor-ontoproc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1339c7f7b63ecf3a629765e8ba2c5a1a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-opencyto/meta.yaml b/recipes/bioconductor-opencyto/meta.yaml index eb0c9a096c2c2..01c35c1e77dfe 100644 --- a/recipes/bioconductor-opencyto/meta.yaml +++ b/recipes/bioconductor-opencyto/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.22.0" %} +{% set version = "1.22.2" %} {% set name = "openCyto" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 8ef329fcc5a35b0d0dc888d04503c78d + md5: 56aa419ec24bf7facf91542149601ebb build: number: 0 rpaths: diff --git a/recipes/bioconductor-openprimer/meta.yaml b/recipes/bioconductor-openprimer/meta.yaml index f5cddaa652cfa..447e463eb8171 100644 --- a/recipes/bioconductor-openprimer/meta.yaml +++ b/recipes/bioconductor-openprimer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a46cb62bd821bd0381698fa8d3adf64c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -50,11 +50,6 @@ requirements: - 'r-tinytex >=0.5' - 'r-uniqtag >=1.0' - 'r-xml >=3.98-1.4' - - mafft >=7.305 - - oligoarrayaux >=3.8 - - viennarna >=2.4.1 - - melting >=5.1.1 - - pandoc run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-biostrings >=2.52.0,<2.53.0' @@ -85,11 +80,6 @@ requirements: - 'r-tinytex >=0.5' - 'r-uniqtag >=1.0' - 'r-xml >=3.98-1.4' - - mafft >=7.305 - - oligoarrayaux >=3.8 - - viennarna >=2.4.1 - - melting >=5.1.1 - - pandoc test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-openprimerui/meta.yaml b/recipes/bioconductor-openprimerui/meta.yaml index c1adb4950372b..12614714bcd84 100644 --- a/recipes/bioconductor-openprimerui/meta.yaml +++ b/recipes/bioconductor-openprimerui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 64ce3b33f1750ddd769caa1f01686597 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-operonhumanv3.db/meta.yaml b/recipes/bioconductor-operonhumanv3.db/meta.yaml index b15023a135372..f048a4771cdc4 100644 --- a/recipes/bioconductor-operonhumanv3.db/meta.yaml +++ b/recipes/bioconductor-operonhumanv3.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 648da5d4d63c6c8327f6035ee09f2b65 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-opossom/meta.yaml b/recipes/bioconductor-opossom/meta.yaml index 09fca7bc3d642..7679a34669b27 100644 --- a/recipes/bioconductor-opossom/meta.yaml +++ b/recipes/bioconductor-opossom/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b92d8034deb4e699e0da43859bc42378 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oppar/meta.yaml b/recipes/bioconductor-oppar/meta.yaml index 62c24e5d632aa..30104f107a3b2 100644 --- a/recipes/bioconductor-oppar/meta.yaml +++ b/recipes/bioconductor-oppar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c2cdab3611fa027800da04b13fc75da6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-opweight/meta.yaml b/recipes/bioconductor-opweight/meta.yaml index c33c6413ecf1c..b30d56ed87a0c 100644 --- a/recipes/bioconductor-opweight/meta.yaml +++ b/recipes/bioconductor-opweight/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4472bf693a02a5fc0225ab8c6a741881 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-orderedlist/meta.yaml b/recipes/bioconductor-orderedlist/meta.yaml index 59c049d59eaec..ab2cf66f45ffa 100644 --- a/recipes/bioconductor-orderedlist/meta.yaml +++ b/recipes/bioconductor-orderedlist/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 80f6759e6648c53a1979233a4dd0a7b4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-orfik/meta.yaml b/recipes/bioconductor-orfik/meta.yaml index e145f9e45b594..9027957e5f3f7 100644 --- a/recipes/bioconductor-orfik/meta.yaml +++ b/recipes/bioconductor-orfik/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.1" %} {% set name = "ORFik" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 339394a4aacc9be399307306bb24d501 + md5: 3f23cbc53a12e92a3a9311d971600ba3 build: number: 0 rpaths: diff --git a/recipes/bioconductor-org.ag.eg.db/meta.yaml b/recipes/bioconductor-org.ag.eg.db/meta.yaml index 3cbc1cbec596c..a6e075695ea26 100644 --- a/recipes/bioconductor-org.ag.eg.db/meta.yaml +++ b/recipes/bioconductor-org.ag.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 12c692e93ad991dfd783cde907e753bb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.ag.eg.db/post-link.sh b/recipes/bioconductor-org.ag.eg.db/post-link.sh index bbebc3ec1ca2d..2d340ab50726f 100644 --- a/recipes/bioconductor-org.ag.eg.db/post-link.sh +++ b/recipes/bioconductor-org.ag.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Ag.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Ag.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.ag.eg.db/bioconductor-org.ag.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.ag.eg.db/bioconductor-org.ag.eg.db_3.8.2_src_all.tar.gz" ) MD5="12c692e93ad991dfd783cde907e753bb" diff --git a/recipes/bioconductor-org.at.tair.db/meta.yaml b/recipes/bioconductor-org.at.tair.db/meta.yaml index 3747bef5f4c9c..93226cccaefbf 100644 --- a/recipes/bioconductor-org.at.tair.db/meta.yaml +++ b/recipes/bioconductor-org.at.tair.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e3efecf164d207eba2fec62cb167f9b9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.at.tair.db/post-link.sh b/recipes/bioconductor-org.at.tair.db/post-link.sh index 8e4f406274f96..f35d3e3b0a7e7 100644 --- a/recipes/bioconductor-org.at.tair.db/post-link.sh +++ b/recipes/bioconductor-org.at.tair.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.At.tair.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.At.tair.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.at.tair.db/bioconductor-org.at.tair.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.at.tair.db/bioconductor-org.at.tair.db_3.8.2_src_all.tar.gz" ) MD5="e3efecf164d207eba2fec62cb167f9b9" diff --git a/recipes/bioconductor-org.bt.eg.db/meta.yaml b/recipes/bioconductor-org.bt.eg.db/meta.yaml index 4c6dc3b4fee7a..81989902436b0 100644 --- a/recipes/bioconductor-org.bt.eg.db/meta.yaml +++ b/recipes/bioconductor-org.bt.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dd66082b68fe1993058086b74be713e2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.bt.eg.db/post-link.sh b/recipes/bioconductor-org.bt.eg.db/post-link.sh index 2e833a3c7a880..42c4be237131d 100644 --- a/recipes/bioconductor-org.bt.eg.db/post-link.sh +++ b/recipes/bioconductor-org.bt.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Bt.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Bt.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.bt.eg.db/bioconductor-org.bt.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.bt.eg.db/bioconductor-org.bt.eg.db_3.8.2_src_all.tar.gz" ) MD5="dd66082b68fe1993058086b74be713e2" diff --git a/recipes/bioconductor-org.ce.eg.db/meta.yaml b/recipes/bioconductor-org.ce.eg.db/meta.yaml index 45b841b31028b..7569196a0dee0 100644 --- a/recipes/bioconductor-org.ce.eg.db/meta.yaml +++ b/recipes/bioconductor-org.ce.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8d60c5d14fa63b6b4bbaee3b65611136 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.ce.eg.db/post-link.sh b/recipes/bioconductor-org.ce.eg.db/post-link.sh index a2fb60831c434..a1ad05420a317 100644 --- a/recipes/bioconductor-org.ce.eg.db/post-link.sh +++ b/recipes/bioconductor-org.ce.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Ce.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Ce.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.ce.eg.db/bioconductor-org.ce.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.ce.eg.db/bioconductor-org.ce.eg.db_3.8.2_src_all.tar.gz" ) MD5="8d60c5d14fa63b6b4bbaee3b65611136" diff --git a/recipes/bioconductor-org.cf.eg.db/meta.yaml b/recipes/bioconductor-org.cf.eg.db/meta.yaml index bc1009f706263..7daee56332486 100644 --- a/recipes/bioconductor-org.cf.eg.db/meta.yaml +++ b/recipes/bioconductor-org.cf.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b2529f280240e86ff4fd9e3f6ceacbc8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.cf.eg.db/post-link.sh b/recipes/bioconductor-org.cf.eg.db/post-link.sh index cd3590278df2e..ef73cb8e01936 100644 --- a/recipes/bioconductor-org.cf.eg.db/post-link.sh +++ b/recipes/bioconductor-org.cf.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Cf.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Cf.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.cf.eg.db/bioconductor-org.cf.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.cf.eg.db/bioconductor-org.cf.eg.db_3.8.2_src_all.tar.gz" ) MD5="b2529f280240e86ff4fd9e3f6ceacbc8" diff --git a/recipes/bioconductor-org.dm.eg.db/meta.yaml b/recipes/bioconductor-org.dm.eg.db/meta.yaml index 7d972b0b17baa..cb374d1284675 100644 --- a/recipes/bioconductor-org.dm.eg.db/meta.yaml +++ b/recipes/bioconductor-org.dm.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4df4da07ee0e0bb367cf91bf2f5c3909 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.dm.eg.db/post-link.sh b/recipes/bioconductor-org.dm.eg.db/post-link.sh index 92f40a6500ebe..9dc57a6808ed8 100644 --- a/recipes/bioconductor-org.dm.eg.db/post-link.sh +++ b/recipes/bioconductor-org.dm.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Dm.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Dm.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.dm.eg.db/bioconductor-org.dm.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.dm.eg.db/bioconductor-org.dm.eg.db_3.8.2_src_all.tar.gz" ) MD5="4df4da07ee0e0bb367cf91bf2f5c3909" diff --git a/recipes/bioconductor-org.dr.eg.db/meta.yaml b/recipes/bioconductor-org.dr.eg.db/meta.yaml index dd0a2e48b133a..5ddde5686ce05 100644 --- a/recipes/bioconductor-org.dr.eg.db/meta.yaml +++ b/recipes/bioconductor-org.dr.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3426287b8ba7d41fbb5c0a8c6f6b2276 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.dr.eg.db/post-link.sh b/recipes/bioconductor-org.dr.eg.db/post-link.sh index 1a75f7b9364f1..dd4c71bfe5ddb 100644 --- a/recipes/bioconductor-org.dr.eg.db/post-link.sh +++ b/recipes/bioconductor-org.dr.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Dr.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Dr.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.dr.eg.db/bioconductor-org.dr.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.dr.eg.db/bioconductor-org.dr.eg.db_3.8.2_src_all.tar.gz" ) MD5="3426287b8ba7d41fbb5c0a8c6f6b2276" diff --git a/recipes/bioconductor-org.eck12.eg.db/meta.yaml b/recipes/bioconductor-org.eck12.eg.db/meta.yaml index f954277c6ca1e..f0df0b3a71444 100644 --- a/recipes/bioconductor-org.eck12.eg.db/meta.yaml +++ b/recipes/bioconductor-org.eck12.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ab6ed04e6c51571fc754f90bf21861a2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.eck12.eg.db/post-link.sh b/recipes/bioconductor-org.eck12.eg.db/post-link.sh index 7038f208738fc..f7bb76121c597 100644 --- a/recipes/bioconductor-org.eck12.eg.db/post-link.sh +++ b/recipes/bioconductor-org.eck12.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.EcK12.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.EcK12.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.eck12.eg.db/bioconductor-org.eck12.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.eck12.eg.db/bioconductor-org.eck12.eg.db_3.8.2_src_all.tar.gz" ) MD5="ab6ed04e6c51571fc754f90bf21861a2" diff --git a/recipes/bioconductor-org.ecsakai.eg.db/meta.yaml b/recipes/bioconductor-org.ecsakai.eg.db/meta.yaml index 1a1195fbd6ffc..0c65c4e66be7e 100644 --- a/recipes/bioconductor-org.ecsakai.eg.db/meta.yaml +++ b/recipes/bioconductor-org.ecsakai.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 006ead1a2f9f27ad61d79709b1a7bf68 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.ecsakai.eg.db/post-link.sh b/recipes/bioconductor-org.ecsakai.eg.db/post-link.sh index 56171876ac22e..bf66a05a50174 100644 --- a/recipes/bioconductor-org.ecsakai.eg.db/post-link.sh +++ b/recipes/bioconductor-org.ecsakai.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.EcSakai.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.EcSakai.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.ecsakai.eg.db/bioconductor-org.ecsakai.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.ecsakai.eg.db/bioconductor-org.ecsakai.eg.db_3.8.2_src_all.tar.gz" ) MD5="006ead1a2f9f27ad61d79709b1a7bf68" diff --git a/recipes/bioconductor-org.gg.eg.db/meta.yaml b/recipes/bioconductor-org.gg.eg.db/meta.yaml index a4d87c96b8bf3..6861d8be3e69e 100644 --- a/recipes/bioconductor-org.gg.eg.db/meta.yaml +++ b/recipes/bioconductor-org.gg.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 01c0e59d398059d547d45b4998e0959a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.gg.eg.db/post-link.sh b/recipes/bioconductor-org.gg.eg.db/post-link.sh index be0d4513ad02a..4d1817044778e 100644 --- a/recipes/bioconductor-org.gg.eg.db/post-link.sh +++ b/recipes/bioconductor-org.gg.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Gg.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Gg.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.gg.eg.db/bioconductor-org.gg.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.gg.eg.db/bioconductor-org.gg.eg.db_3.8.2_src_all.tar.gz" ) MD5="01c0e59d398059d547d45b4998e0959a" diff --git a/recipes/bioconductor-org.hs.eg.db/meta.yaml b/recipes/bioconductor-org.hs.eg.db/meta.yaml index 24e53c3bba0f0..0e0b234f093b3 100644 --- a/recipes/bioconductor-org.hs.eg.db/meta.yaml +++ b/recipes/bioconductor-org.hs.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 79de4b2d1cb26b303a9a4d286d6dd766 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.hs.eg.db/post-link.sh b/recipes/bioconductor-org.hs.eg.db/post-link.sh index c047c7ffb96a9..a8fc90791b48e 100644 --- a/recipes/bioconductor-org.hs.eg.db/post-link.sh +++ b/recipes/bioconductor-org.hs.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Hs.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Hs.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.hs.eg.db/bioconductor-org.hs.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.hs.eg.db/bioconductor-org.hs.eg.db_3.8.2_src_all.tar.gz" ) MD5="79de4b2d1cb26b303a9a4d286d6dd766" diff --git a/recipes/bioconductor-org.mm.eg.db/meta.yaml b/recipes/bioconductor-org.mm.eg.db/meta.yaml index 7aafa3254e79c..e31d0f76784b1 100644 --- a/recipes/bioconductor-org.mm.eg.db/meta.yaml +++ b/recipes/bioconductor-org.mm.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6a8c0350bcdbcfa8ef904c83d18bce3f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.mm.eg.db/post-link.sh b/recipes/bioconductor-org.mm.eg.db/post-link.sh index d968e33661358..5dfb3da64c590 100644 --- a/recipes/bioconductor-org.mm.eg.db/post-link.sh +++ b/recipes/bioconductor-org.mm.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Mm.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Mm.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.mm.eg.db/bioconductor-org.mm.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.mm.eg.db/bioconductor-org.mm.eg.db_3.8.2_src_all.tar.gz" ) MD5="6a8c0350bcdbcfa8ef904c83d18bce3f" diff --git a/recipes/bioconductor-org.mmu.eg.db/meta.yaml b/recipes/bioconductor-org.mmu.eg.db/meta.yaml index 98c7c66e1a3ba..de940296c9502 100644 --- a/recipes/bioconductor-org.mmu.eg.db/meta.yaml +++ b/recipes/bioconductor-org.mmu.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 23ca43a82c03c50004eb237c1989bac5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.mmu.eg.db/post-link.sh b/recipes/bioconductor-org.mmu.eg.db/post-link.sh index b7535b4783f8f..de54556fbc68b 100644 --- a/recipes/bioconductor-org.mmu.eg.db/post-link.sh +++ b/recipes/bioconductor-org.mmu.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Mmu.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Mmu.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.mmu.eg.db/bioconductor-org.mmu.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.mmu.eg.db/bioconductor-org.mmu.eg.db_3.8.2_src_all.tar.gz" ) MD5="23ca43a82c03c50004eb237c1989bac5" diff --git a/recipes/bioconductor-org.pf.plasmo.db/meta.yaml b/recipes/bioconductor-org.pf.plasmo.db/meta.yaml index 9f53867cc506a..646376b29efd4 100644 --- a/recipes/bioconductor-org.pf.plasmo.db/meta.yaml +++ b/recipes/bioconductor-org.pf.plasmo.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5ae4ea5101f16c79f5b7ad6b8717a5d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.pf.plasmo.db/post-link.sh b/recipes/bioconductor-org.pf.plasmo.db/post-link.sh index a319cfd27a0b3..85e5328abaf6b 100644 --- a/recipes/bioconductor-org.pf.plasmo.db/post-link.sh +++ b/recipes/bioconductor-org.pf.plasmo.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Pf.plasmo.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Pf.plasmo.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.pf.plasmo.db/bioconductor-org.pf.plasmo.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.pf.plasmo.db/bioconductor-org.pf.plasmo.db_3.8.2_src_all.tar.gz" ) MD5="5ae4ea5101f16c79f5b7ad6b8717a5d0" diff --git a/recipes/bioconductor-org.pt.eg.db/meta.yaml b/recipes/bioconductor-org.pt.eg.db/meta.yaml index 0946f58f27977..b1221c3f1e234 100644 --- a/recipes/bioconductor-org.pt.eg.db/meta.yaml +++ b/recipes/bioconductor-org.pt.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6a9c57b4b41612569c8d2d1ca0a077e6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.pt.eg.db/post-link.sh b/recipes/bioconductor-org.pt.eg.db/post-link.sh index 1743b1dca0cd2..e2ccb2970c92b 100644 --- a/recipes/bioconductor-org.pt.eg.db/post-link.sh +++ b/recipes/bioconductor-org.pt.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Pt.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Pt.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.pt.eg.db/bioconductor-org.pt.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.pt.eg.db/bioconductor-org.pt.eg.db_3.8.2_src_all.tar.gz" ) MD5="6a9c57b4b41612569c8d2d1ca0a077e6" diff --git a/recipes/bioconductor-org.rn.eg.db/meta.yaml b/recipes/bioconductor-org.rn.eg.db/meta.yaml index db10a9ca028cc..ddde0836e0652 100644 --- a/recipes/bioconductor-org.rn.eg.db/meta.yaml +++ b/recipes/bioconductor-org.rn.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e53247d4a84bcc5a11c6479e565dc16f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.rn.eg.db/post-link.sh b/recipes/bioconductor-org.rn.eg.db/post-link.sh index 9838ded89c5db..b6d29003def0b 100644 --- a/recipes/bioconductor-org.rn.eg.db/post-link.sh +++ b/recipes/bioconductor-org.rn.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Rn.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Rn.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.rn.eg.db/bioconductor-org.rn.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.rn.eg.db/bioconductor-org.rn.eg.db_3.8.2_src_all.tar.gz" ) MD5="e53247d4a84bcc5a11c6479e565dc16f" diff --git a/recipes/bioconductor-org.sc.sgd.db/meta.yaml b/recipes/bioconductor-org.sc.sgd.db/meta.yaml index a8b84c182c37e..42ba865ef4dbb 100644 --- a/recipes/bioconductor-org.sc.sgd.db/meta.yaml +++ b/recipes/bioconductor-org.sc.sgd.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 386e853c14191f8845fc0237aad0d0db build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.sc.sgd.db/post-link.sh b/recipes/bioconductor-org.sc.sgd.db/post-link.sh index 9d92d721c9db1..98d9ca74220e0 100644 --- a/recipes/bioconductor-org.sc.sgd.db/post-link.sh +++ b/recipes/bioconductor-org.sc.sgd.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Sc.sgd.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Sc.sgd.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.sc.sgd.db/bioconductor-org.sc.sgd.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.sc.sgd.db/bioconductor-org.sc.sgd.db_3.8.2_src_all.tar.gz" ) MD5="386e853c14191f8845fc0237aad0d0db" diff --git a/recipes/bioconductor-org.ss.eg.db/meta.yaml b/recipes/bioconductor-org.ss.eg.db/meta.yaml index 18627b1a6b577..7d09e43401bc0 100644 --- a/recipes/bioconductor-org.ss.eg.db/meta.yaml +++ b/recipes/bioconductor-org.ss.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8a177d13bc1a02df2edec3a017d62e2c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.ss.eg.db/post-link.sh b/recipes/bioconductor-org.ss.eg.db/post-link.sh index c373ba5bf6131..0ab3bdfa3d9c7 100644 --- a/recipes/bioconductor-org.ss.eg.db/post-link.sh +++ b/recipes/bioconductor-org.ss.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Ss.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Ss.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.ss.eg.db/bioconductor-org.ss.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.ss.eg.db/bioconductor-org.ss.eg.db_3.8.2_src_all.tar.gz" ) MD5="8a177d13bc1a02df2edec3a017d62e2c" diff --git a/recipes/bioconductor-org.xl.eg.db/meta.yaml b/recipes/bioconductor-org.xl.eg.db/meta.yaml index dd773f9ff9039..f40723ad894d3 100644 --- a/recipes/bioconductor-org.xl.eg.db/meta.yaml +++ b/recipes/bioconductor-org.xl.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7161e10c46295930372f0febb2e36829 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-org.xl.eg.db/post-link.sh b/recipes/bioconductor-org.xl.eg.db/post-link.sh index e18e4dda3baa0..fa2e4a089b1be 100644 --- a/recipes/bioconductor-org.xl.eg.db/post-link.sh +++ b/recipes/bioconductor-org.xl.eg.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Xl.eg.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/org.Xl.eg.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-org.xl.eg.db/bioconductor-org.xl.eg.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-org.xl.eg.db/bioconductor-org.xl.eg.db_3.8.2_src_all.tar.gz" ) MD5="7161e10c46295930372f0febb2e36829" diff --git a/recipes/bioconductor-organism.dplyr/meta.yaml b/recipes/bioconductor-organism.dplyr/meta.yaml index 1ea6cddb43cd3..c0faa75889171 100644 --- a/recipes/bioconductor-organism.dplyr/meta.yaml +++ b/recipes/bioconductor-organism.dplyr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.11.2" %} +{% set version = "1.12.1" %} {% set name = "Organism.dplyr" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: d56512695734db7fd6ecdefa0e3e606c + md5: 20bbcbbcfda52d6d5a83b85a90a493eb build: number: 0 rpaths: diff --git a/recipes/bioconductor-organismdbi/meta.yaml b/recipes/bioconductor-organismdbi/meta.yaml index 61805096f9006..fc48335ce1fa7 100644 --- a/recipes/bioconductor-organismdbi/meta.yaml +++ b/recipes/bioconductor-organismdbi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c0f1638c0a1fe72f968933fd0877c3a9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-osat/meta.yaml b/recipes/bioconductor-osat/meta.yaml index 2078532ec8490..ea83d956d74df 100644 --- a/recipes/bioconductor-osat/meta.yaml +++ b/recipes/bioconductor-osat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d3f00e9577e4ec4149a4f5f568d7ad4e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oscope/meta.yaml b/recipes/bioconductor-oscope/meta.yaml index 0c5896630c320..98e798445a7f7 100644 --- a/recipes/bioconductor-oscope/meta.yaml +++ b/recipes/bioconductor-oscope/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 25588131ddda3404c7e1c1674c9f486c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-otubase/meta.yaml b/recipes/bioconductor-otubase/meta.yaml index b0e2eab5c33ed..c527041b3bd4c 100644 --- a/recipes/bioconductor-otubase/meta.yaml +++ b/recipes/bioconductor-otubase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cb91122e96e990e5975138ff36d21c7f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-outlierd/meta.yaml b/recipes/bioconductor-outlierd/meta.yaml index 523812bcaf6e6..3c8f192245dd7 100644 --- a/recipes/bioconductor-outlierd/meta.yaml +++ b/recipes/bioconductor-outlierd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 44a6e07c906fa063969f5544505ca011 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-outrider/meta.yaml b/recipes/bioconductor-outrider/meta.yaml index b5ea64103eb1c..9b23bac9d9527 100644 --- a/recipes/bioconductor-outrider/meta.yaml +++ b/recipes/bioconductor-outrider/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2de375148f4a0c65158b4e852bbca080 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-oveseg/meta.yaml b/recipes/bioconductor-oveseg/meta.yaml index 4515f35613cdd..3b8357b413400 100644 --- a/recipes/bioconductor-oveseg/meta.yaml +++ b/recipes/bioconductor-oveseg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 046a686ab8c0f5679692f8899b8a8c25 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-paa/meta.yaml b/recipes/bioconductor-paa/meta.yaml index 8ce564d49c03a..c6f28bc608506 100644 --- a/recipes/bioconductor-paa/meta.yaml +++ b/recipes/bioconductor-paa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 88bae0739cd3c1eb902e07a2ae2a2d10 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -31,7 +31,6 @@ requirements: - r-randomforest - 'r-rcpp >=0.11.6' - r-rocr - - random-jungle run: - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-sva >=3.32.0,<3.33.0' @@ -44,7 +43,6 @@ requirements: - r-randomforest - 'r-rcpp >=0.11.6' - r-rocr - - random-jungle build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-padog/meta.yaml b/recipes/bioconductor-padog/meta.yaml index a7fd1f5368814..e5de0f94e415c 100644 --- a/recipes/bioconductor-padog/meta.yaml +++ b/recipes/bioconductor-padog/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b3d4cf132c70bf0ce99691aabcf0ea3e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-paeg1acdf/meta.yaml b/recipes/bioconductor-paeg1acdf/meta.yaml index bb54451eba5c7..78c476738ecef 100644 --- a/recipes/bioconductor-paeg1acdf/meta.yaml +++ b/recipes/bioconductor-paeg1acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 73af974112051db0f715518393e84726 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-paeg1aprobe/meta.yaml b/recipes/bioconductor-paeg1aprobe/meta.yaml index fbba4a8c48153..5845a31812f76 100644 --- a/recipes/bioconductor-paeg1aprobe/meta.yaml +++ b/recipes/bioconductor-paeg1aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 493fa1fc7b92a78c8114b65038113c42 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pairadise/meta.yaml b/recipes/bioconductor-pairadise/meta.yaml index 03dcdd320d4f6..29dd8f129a3f3 100644 --- a/recipes/bioconductor-pairadise/meta.yaml +++ b/recipes/bioconductor-pairadise/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d394254a019c201f6b9bc6e5490bd29c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-paircompviz/meta.yaml b/recipes/bioconductor-paircompviz/meta.yaml index d21c9d368e387..e02d7046d4f1e 100644 --- a/recipes/bioconductor-paircompviz/meta.yaml +++ b/recipes/bioconductor-paircompviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b52ac2a27612f5ea60289601fac42af3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pandar/meta.yaml b/recipes/bioconductor-pandar/meta.yaml index c78303828dac5..8a210b903e232 100644 --- a/recipes/bioconductor-pandar/meta.yaml +++ b/recipes/bioconductor-pandar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dc76ba50e9307fd00be88cfc5a8eae54 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-panelcn.mops/meta.yaml b/recipes/bioconductor-panelcn.mops/meta.yaml index b57a8cab1f7ac..00bbc4aff30a0 100644 --- a/recipes/bioconductor-panelcn.mops/meta.yaml +++ b/recipes/bioconductor-panelcn.mops/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 98a51f428f49f6b3148f7523a253189f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-panp/meta.yaml b/recipes/bioconductor-panp/meta.yaml index 191b92ab4933d..9f0361b8288f5 100644 --- a/recipes/bioconductor-panp/meta.yaml +++ b/recipes/bioconductor-panp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9f78631585e785d969cbc4f2035a2083 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-panr/meta.yaml b/recipes/bioconductor-panr/meta.yaml index 66be4e390bfcf..18c394d88eaa6 100644 --- a/recipes/bioconductor-panr/meta.yaml +++ b/recipes/bioconductor-panr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0a7ad116627065730fe5473064cd5f81 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-panther.db/meta.yaml b/recipes/bioconductor-panther.db/meta.yaml index 9e15f337ce33b..3722e0c29a302 100644 --- a/recipes/bioconductor-panther.db/meta.yaml +++ b/recipes/bioconductor-panther.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bfd7362a4823bd3fda1bfab8e5b7908e build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-panvizgenerator/meta.yaml b/recipes/bioconductor-panvizgenerator/meta.yaml index aab47e7307030..3ff90d1240ed1 100644 --- a/recipes/bioconductor-panvizgenerator/meta.yaml +++ b/recipes/bioconductor-panvizgenerator/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 68fb5e9658c0cc6fab0a3eb8aea62fec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-papi/meta.yaml b/recipes/bioconductor-papi/meta.yaml index 2b9eb36a5f474..8892ab94471e1 100644 --- a/recipes/bioconductor-papi/meta.yaml +++ b/recipes/bioconductor-papi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 196bdffd32b72380c9e610b615c765ae build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-parathyroidse/meta.yaml b/recipes/bioconductor-parathyroidse/meta.yaml index 6b7886b0c3cd7..06ebeed1ff93a 100644 --- a/recipes/bioconductor-parathyroidse/meta.yaml +++ b/recipes/bioconductor-parathyroidse/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f0afc965e91000f48da3b5bb7b141b1f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-parathyroidse/post-link.sh b/recipes/bioconductor-parathyroidse/post-link.sh index 7d68f0a704d69..888dece7df2c6 100644 --- a/recipes/bioconductor-parathyroidse/post-link.sh +++ b/recipes/bioconductor-parathyroidse/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/parathyroidSE_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/parathyroidSE_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-parathyroidse/bioconductor-parathyroidse_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-parathyroidse/bioconductor-parathyroidse_1.22.0_src_all.tar.gz" ) MD5="f0afc965e91000f48da3b5bb7b141b1f" diff --git a/recipes/bioconductor-parglms/meta.yaml b/recipes/bioconductor-parglms/meta.yaml index 71f0f3d6c7110..31d92ef91ef22 100644 --- a/recipes/bioconductor-parglms/meta.yaml +++ b/recipes/bioconductor-parglms/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0494730840ec5e71ff1a444532edfc65 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-parody/meta.yaml b/recipes/bioconductor-parody/meta.yaml index c890092489543..729c2a7e5f039 100644 --- a/recipes/bioconductor-parody/meta.yaml +++ b/recipes/bioconductor-parody/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d3707ed299e935718c26f52a37fb2d00 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-partheenmetadata.db/meta.yaml b/recipes/bioconductor-partheenmetadata.db/meta.yaml index ac1b7d54bcf97..11bd917be0619 100644 --- a/recipes/bioconductor-partheenmetadata.db/meta.yaml +++ b/recipes/bioconductor-partheenmetadata.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1c9fd27e13a341b9aba9a235a67ce978 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pasilla/meta.yaml b/recipes/bioconductor-pasilla/meta.yaml index e62c61ba96095..84844e820a9ce 100644 --- a/recipes/bioconductor-pasilla/meta.yaml +++ b/recipes/bioconductor-pasilla/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0bd04b62ac21a38cb820a74c4bd42534 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pasilla/post-link.sh b/recipes/bioconductor-pasilla/post-link.sh index 6a95484b69855..924ade2cb208f 100644 --- a/recipes/bioconductor-pasilla/post-link.sh +++ b/recipes/bioconductor-pasilla/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pasilla_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/pasilla_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pasilla/bioconductor-pasilla_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pasilla/bioconductor-pasilla_1.12.0_src_all.tar.gz" ) MD5="0bd04b62ac21a38cb820a74c4bd42534" diff --git a/recipes/bioconductor-pasillabamsubset/meta.yaml b/recipes/bioconductor-pasillabamsubset/meta.yaml index cd8f396c08f5e..46cb0a2af866f 100644 --- a/recipes/bioconductor-pasillabamsubset/meta.yaml +++ b/recipes/bioconductor-pasillabamsubset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a941d288f2aa572abce323159e473271 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pasillabamsubset/post-link.sh b/recipes/bioconductor-pasillabamsubset/post-link.sh index 9ce659deedfe8..81e08c3ae8fd7 100644 --- a/recipes/bioconductor-pasillabamsubset/post-link.sh +++ b/recipes/bioconductor-pasillabamsubset/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pasillaBamSubset_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/pasillaBamSubset_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pasillabamsubset/bioconductor-pasillabamsubset_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pasillabamsubset/bioconductor-pasillabamsubset_0.22.0_src_all.tar.gz" ) MD5="a941d288f2aa572abce323159e473271" diff --git a/recipes/bioconductor-pasillatranscriptexpr/meta.yaml b/recipes/bioconductor-pasillatranscriptexpr/meta.yaml index 80c63172f8011..1c3f5558e815e 100644 --- a/recipes/bioconductor-pasillatranscriptexpr/meta.yaml +++ b/recipes/bioconductor-pasillatranscriptexpr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: faceed94f7269a49ff908400b7aab192 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pasillatranscriptexpr/post-link.sh b/recipes/bioconductor-pasillatranscriptexpr/post-link.sh index f5e113f2bd80f..033673520bcd6 100644 --- a/recipes/bioconductor-pasillatranscriptexpr/post-link.sh +++ b/recipes/bioconductor-pasillatranscriptexpr/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PasillaTranscriptExpr_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/PasillaTranscriptExpr_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pasillatranscriptexpr/bioconductor-pasillatranscriptexpr_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pasillatranscriptexpr/bioconductor-pasillatranscriptexpr_1.12.0_src_all.tar.gz" ) MD5="faceed94f7269a49ff908400b7aab192" diff --git a/recipes/bioconductor-past/meta.yaml b/recipes/bioconductor-past/meta.yaml index 29e0a07abf1f7..5f3382d05b879 100644 --- a/recipes/bioconductor-past/meta.yaml +++ b/recipes/bioconductor-past/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3c6515bb913a54463b8c597aef5fbda4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-path2ppi/meta.yaml b/recipes/bioconductor-path2ppi/meta.yaml index cdef730f8e350..4fbc182afd39b 100644 --- a/recipes/bioconductor-path2ppi/meta.yaml +++ b/recipes/bioconductor-path2ppi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fb9995b5286c70abba1ec04d9331358d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathifier/meta.yaml b/recipes/bioconductor-pathifier/meta.yaml index 255544fba664e..69b55d57231b5 100644 --- a/recipes/bioconductor-pathifier/meta.yaml +++ b/recipes/bioconductor-pathifier/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 58df0dff57cf54fd9a4cd0f21f13157b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathnet/meta.yaml b/recipes/bioconductor-pathnet/meta.yaml index ee06ed9b5f77e..197465ea55312 100644 --- a/recipes/bioconductor-pathnet/meta.yaml +++ b/recipes/bioconductor-pathnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8379b86eac97f490fe40f90d7dcae045 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathnetdata/meta.yaml b/recipes/bioconductor-pathnetdata/meta.yaml index a49c103a85b46..c93f6407f345a 100644 --- a/recipes/bioconductor-pathnetdata/meta.yaml +++ b/recipes/bioconductor-pathnetdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2001039db08246bf7daef431935a2ef6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathnetdata/post-link.sh b/recipes/bioconductor-pathnetdata/post-link.sh index 0568d0497d1ef..cb4933ccf6108 100644 --- a/recipes/bioconductor-pathnetdata/post-link.sh +++ b/recipes/bioconductor-pathnetdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PathNetData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/PathNetData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pathnetdata/bioconductor-pathnetdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pathnetdata/bioconductor-pathnetdata_1.20.0_src_all.tar.gz" ) MD5="2001039db08246bf7daef431935a2ef6" diff --git a/recipes/bioconductor-pathostat/meta.yaml b/recipes/bioconductor-pathostat/meta.yaml index 48ed96bd2835c..27cf3b3ae7bc8 100644 --- a/recipes/bioconductor-pathostat/meta.yaml +++ b/recipes/bioconductor-pathostat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 39aa70d559ca8ed7159ea9fefeab67db build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathprint/meta.yaml b/recipes/bioconductor-pathprint/meta.yaml index a1699c329b56b..850da86a25e1e 100644 --- a/recipes/bioconductor-pathprint/meta.yaml +++ b/recipes/bioconductor-pathprint/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f78e3b730d7c273fea0d23ad7c350461 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathprintgeodata/meta.yaml b/recipes/bioconductor-pathprintgeodata/meta.yaml index 5b210989cf718..8953f296bdf50 100644 --- a/recipes/bioconductor-pathprintgeodata/meta.yaml +++ b/recipes/bioconductor-pathprintgeodata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a7237e62dda8f356c41d35e50fef33e8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathprintgeodata/post-link.sh b/recipes/bioconductor-pathprintgeodata/post-link.sh index 2e7f85b268240..7ff4e23320352 100644 --- a/recipes/bioconductor-pathprintgeodata/post-link.sh +++ b/recipes/bioconductor-pathprintgeodata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pathprintGEOData_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/pathprintGEOData_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pathprintgeodata/bioconductor-pathprintgeodata_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pathprintgeodata/bioconductor-pathprintgeodata_1.14.0_src_all.tar.gz" ) MD5="a7237e62dda8f356c41d35e50fef33e8" diff --git a/recipes/bioconductor-pathrender/meta.yaml b/recipes/bioconductor-pathrender/meta.yaml index df23da862496c..840d02c9138b1 100644 --- a/recipes/bioconductor-pathrender/meta.yaml +++ b/recipes/bioconductor-pathrender/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 74527eae51dd579c3d27e1c8c15d6932 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,14 +21,14 @@ build: requirements: host: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - - 'bioconductor-cmap >=1.16.0,<1.17.0' + - 'bioconductor-cmap >=1.15.0,<1.16.0' - 'bioconductor-graph >=1.62.0,<1.63.0' - 'bioconductor-rgraphviz >=2.28.0,<2.29.0' - r-base - r-rcolorbrewer run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - - 'bioconductor-cmap >=1.16.0,<1.17.0' + - 'bioconductor-cmap >=1.15.0,<1.16.0' - 'bioconductor-graph >=1.62.0,<1.63.0' - 'bioconductor-rgraphviz >=2.28.0,<2.29.0' - r-base diff --git a/recipes/bioconductor-pathvar/meta.yaml b/recipes/bioconductor-pathvar/meta.yaml index 7d3fd71d53358..894eda8e45774 100644 --- a/recipes/bioconductor-pathvar/meta.yaml +++ b/recipes/bioconductor-pathvar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bb2379f993f3a1fa95240838df6b739e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathview/meta.yaml b/recipes/bioconductor-pathview/meta.yaml index 531f881830061..1ba12bbc53c67 100644 --- a/recipes/bioconductor-pathview/meta.yaml +++ b/recipes/bioconductor-pathview/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9b6dd193eb8566c7991ca16a95913f45 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathwaypca/meta.yaml b/recipes/bioconductor-pathwaypca/meta.yaml index 3209178d51b67..f9cf152d687f4 100644 --- a/recipes/bioconductor-pathwaypca/meta.yaml +++ b/recipes/bioconductor-pathwaypca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d71f4103f7a8b57c8c57c05e616587dd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pathwaysplice/meta.yaml b/recipes/bioconductor-pathwaysplice/meta.yaml index 9d34bd9f169f3..d2b1fbb6353c9 100644 --- a/recipes/bioconductor-pathwaysplice/meta.yaml +++ b/recipes/bioconductor-pathwaysplice/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 039776737311855f25e984c72c6bebaa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-paxtoolsr/meta.yaml b/recipes/bioconductor-paxtoolsr/meta.yaml index 78c557414431d..cc29e9893e42c 100644 --- a/recipes/bioconductor-paxtoolsr/meta.yaml +++ b/recipes/bioconductor-paxtoolsr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3652a8dd52b4f53044e378ad85457550 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pbase/meta.yaml b/recipes/bioconductor-pbase/meta.yaml index 1de93c9bfe820..938df01145367 100644 --- a/recipes/bioconductor-pbase/meta.yaml +++ b/recipes/bioconductor-pbase/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 76e54fdaedbffd9c9fd04a08529b0519 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcaexplorer/meta.yaml b/recipes/bioconductor-pcaexplorer/meta.yaml index 0e1cbb747580e..beb47aa898f5d 100644 --- a/recipes/bioconductor-pcaexplorer/meta.yaml +++ b/recipes/bioconductor-pcaexplorer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 21e405e483d86636c37046d8d7dcea8d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcagopromoter.hs.hg19/meta.yaml b/recipes/bioconductor-pcagopromoter.hs.hg19/meta.yaml index e7fa55393d1dd..91e5d440588e0 100644 --- a/recipes/bioconductor-pcagopromoter.hs.hg19/meta.yaml +++ b/recipes/bioconductor-pcagopromoter.hs.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 74341bab4a5971398732071dad1898b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcagopromoter.hs.hg19/post-link.sh b/recipes/bioconductor-pcagopromoter.hs.hg19/post-link.sh index 39b37c4fdeda4..d55714db3d214 100644 --- a/recipes/bioconductor-pcagopromoter.hs.hg19/post-link.sh +++ b/recipes/bioconductor-pcagopromoter.hs.hg19/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pcaGoPromoter.Hs.hg19_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/pcaGoPromoter.Hs.hg19_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pcagopromoter.hs.hg19/bioconductor-pcagopromoter.hs.hg19_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pcagopromoter.hs.hg19/bioconductor-pcagopromoter.hs.hg19_1.20.0_src_all.tar.gz" ) MD5="74341bab4a5971398732071dad1898b0" diff --git a/recipes/bioconductor-pcagopromoter.mm.mm9/meta.yaml b/recipes/bioconductor-pcagopromoter.mm.mm9/meta.yaml index dc397ace0614b..eb54d8dbb6710 100644 --- a/recipes/bioconductor-pcagopromoter.mm.mm9/meta.yaml +++ b/recipes/bioconductor-pcagopromoter.mm.mm9/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cdcf550e2a810757e4f0fdd661c0e1a9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcagopromoter.mm.mm9/post-link.sh b/recipes/bioconductor-pcagopromoter.mm.mm9/post-link.sh index 709cc7999b1fb..38b75a924d097 100644 --- a/recipes/bioconductor-pcagopromoter.mm.mm9/post-link.sh +++ b/recipes/bioconductor-pcagopromoter.mm.mm9/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pcaGoPromoter.Mm.mm9_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/pcaGoPromoter.Mm.mm9_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pcagopromoter.mm.mm9/bioconductor-pcagopromoter.mm.mm9_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pcagopromoter.mm.mm9/bioconductor-pcagopromoter.mm.mm9_1.20.0_src_all.tar.gz" ) MD5="cdcf550e2a810757e4f0fdd661c0e1a9" diff --git a/recipes/bioconductor-pcagopromoter.rn.rn4/meta.yaml b/recipes/bioconductor-pcagopromoter.rn.rn4/meta.yaml index 2d745ee4c2c87..cd681c6e290ec 100644 --- a/recipes/bioconductor-pcagopromoter.rn.rn4/meta.yaml +++ b/recipes/bioconductor-pcagopromoter.rn.rn4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0ed2f9e355f461739739ac1d67bbce29 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcagopromoter.rn.rn4/post-link.sh b/recipes/bioconductor-pcagopromoter.rn.rn4/post-link.sh index 7213356096725..2d925e94a7666 100644 --- a/recipes/bioconductor-pcagopromoter.rn.rn4/post-link.sh +++ b/recipes/bioconductor-pcagopromoter.rn.rn4/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pcaGoPromoter.Rn.rn4_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/pcaGoPromoter.Rn.rn4_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pcagopromoter.rn.rn4/bioconductor-pcagopromoter.rn.rn4_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pcagopromoter.rn.rn4/bioconductor-pcagopromoter.rn.rn4_1.20.0_src_all.tar.gz" ) MD5="0ed2f9e355f461739739ac1d67bbce29" diff --git a/recipes/bioconductor-pcagopromoter/meta.yaml b/recipes/bioconductor-pcagopromoter/meta.yaml index ef52abdc75110..9f6b98af2c68d 100644 --- a/recipes/bioconductor-pcagopromoter/meta.yaml +++ b/recipes/bioconductor-pcagopromoter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: da4aa4bf501174c978b6f2718e2d32ae build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcamethods/meta.yaml b/recipes/bioconductor-pcamethods/meta.yaml index 75ab52042095a..80bdd5f06727a 100644 --- a/recipes/bioconductor-pcamethods/meta.yaml +++ b/recipes/bioconductor-pcamethods/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 999fb2811e2fff2da737fa969cf809fd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcan/meta.yaml b/recipes/bioconductor-pcan/meta.yaml index c50350e04e43f..e1bba3948a2c4 100644 --- a/recipes/bioconductor-pcan/meta.yaml +++ b/recipes/bioconductor-pcan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1232cbd6da8413cc00d752f91521c1b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcatools/meta.yaml b/recipes/bioconductor-pcatools/meta.yaml index 5a7fb520e4c9d..ea1c7f69f7206 100644 --- a/recipes/bioconductor-pcatools/meta.yaml +++ b/recipes/bioconductor-pcatools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6ef2bff3637161a072efc798a8fb2af9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pchicdata/meta.yaml b/recipes/bioconductor-pchicdata/meta.yaml index cba43d99013cc..d0ec007aa5f6e 100644 --- a/recipes/bioconductor-pchicdata/meta.yaml +++ b/recipes/bioconductor-pchicdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 18936bf2c0bf4b12b969b6bf8141773a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pchicdata/post-link.sh b/recipes/bioconductor-pchicdata/post-link.sh index 0012ef3494102..edd8001ee66b2 100644 --- a/recipes/bioconductor-pchicdata/post-link.sh +++ b/recipes/bioconductor-pchicdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PCHiCdata_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/PCHiCdata_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pchicdata/bioconductor-pchicdata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pchicdata/bioconductor-pchicdata_1.12.0_src_all.tar.gz" ) MD5="18936bf2c0bf4b12b969b6bf8141773a" diff --git a/recipes/bioconductor-pcot2/meta.yaml b/recipes/bioconductor-pcot2/meta.yaml index 60ce8ce0578d4..4bdaf39e58403 100644 --- a/recipes/bioconductor-pcot2/meta.yaml +++ b/recipes/bioconductor-pcot2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 140130ec124351e324200761b14f98d0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcpheno/meta.yaml b/recipes/bioconductor-pcpheno/meta.yaml index c25d628e1e05b..8e4489a52aa9f 100644 --- a/recipes/bioconductor-pcpheno/meta.yaml +++ b/recipes/bioconductor-pcpheno/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9d57cab88fccbf8ec5ff40dcb0923125 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcxn/meta.yaml b/recipes/bioconductor-pcxn/meta.yaml index c748535363d65..b9d69c9d5aa70 100644 --- a/recipes/bioconductor-pcxn/meta.yaml +++ b/recipes/bioconductor-pcxn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7354db0c5ff6dfe33eba1ca08d943360 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcxndata/meta.yaml b/recipes/bioconductor-pcxndata/meta.yaml index 7ec87bf9336c0..968fee3c6dc92 100644 --- a/recipes/bioconductor-pcxndata/meta.yaml +++ b/recipes/bioconductor-pcxndata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 49ae7b9155cd6680c186180c03869e7f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pcxndata/post-link.sh b/recipes/bioconductor-pcxndata/post-link.sh index 5750c7a00c942..36942af14e5f1 100644 --- a/recipes/bioconductor-pcxndata/post-link.sh +++ b/recipes/bioconductor-pcxndata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pcxnData_2.6.0.tar.gz" "https://bioarchive.galaxyproject.org/pcxnData_2.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pcxndata/bioconductor-pcxndata_2.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pcxndata/bioconductor-pcxndata_2.6.0_src_all.tar.gz" ) MD5="49ae7b9155cd6680c186180c03869e7f" diff --git a/recipes/bioconductor-pd.081229.hg18.promoter.medip.hx1/meta.yaml b/recipes/bioconductor-pd.081229.hg18.promoter.medip.hx1/meta.yaml index 2929fb78b45ae..789891d2cb845 100644 --- a/recipes/bioconductor-pd.081229.hg18.promoter.medip.hx1/meta.yaml +++ b/recipes/bioconductor-pd.081229.hg18.promoter.medip.hx1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f3c240fa0d4503e94047be5ee323856b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.2006.07.18.hg18.refseq.promoter/meta.yaml b/recipes/bioconductor-pd.2006.07.18.hg18.refseq.promoter/meta.yaml index 20321f6e7dac7..e3dd63581a81e 100644 --- a/recipes/bioconductor-pd.2006.07.18.hg18.refseq.promoter/meta.yaml +++ b/recipes/bioconductor-pd.2006.07.18.hg18.refseq.promoter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 00838332d75b82d212078a9957f495df build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.2006.07.18.mm8.refseq.promoter/meta.yaml b/recipes/bioconductor-pd.2006.07.18.mm8.refseq.promoter/meta.yaml index 8872712551415..05ef8185c71b6 100644 --- a/recipes/bioconductor-pd.2006.07.18.mm8.refseq.promoter/meta.yaml +++ b/recipes/bioconductor-pd.2006.07.18.mm8.refseq.promoter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 084b0a6759fd96d1bc775dd4c66c42b0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.2006.10.31.rn34.refseq.promoter/meta.yaml b/recipes/bioconductor-pd.2006.10.31.rn34.refseq.promoter/meta.yaml index 6c39431c219b4..ae6a338c72072 100644 --- a/recipes/bioconductor-pd.2006.10.31.rn34.refseq.promoter/meta.yaml +++ b/recipes/bioconductor-pd.2006.10.31.rn34.refseq.promoter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ab5bb767ad29b213e5a969a5fc51ee7d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ag/meta.yaml b/recipes/bioconductor-pd.ag/meta.yaml index 8586ccf72cadc..89d4db96a8771 100644 --- a/recipes/bioconductor-pd.ag/meta.yaml +++ b/recipes/bioconductor-pd.ag/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 21fb288536568ff010ad4847b671f9d6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.aragene.1.0.st/meta.yaml b/recipes/bioconductor-pd.aragene.1.0.st/meta.yaml index 49047496dcc03..a3b32ad442e43 100644 --- a/recipes/bioconductor-pd.aragene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.aragene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ff87a0793fd4b713c4a45b6c1d4a4977 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.aragene.1.1.st/meta.yaml b/recipes/bioconductor-pd.aragene.1.1.st/meta.yaml index 68fde787a40b1..01764b80dfe38 100644 --- a/recipes/bioconductor-pd.aragene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.aragene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 828ad790eb2495e396d7fcd9bcbf9133 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.atdschip.tiling/meta.yaml b/recipes/bioconductor-pd.atdschip.tiling/meta.yaml index 420afe7b12ef6..d1a91f6f3531d 100644 --- a/recipes/bioconductor-pd.atdschip.tiling/meta.yaml +++ b/recipes/bioconductor-pd.atdschip.tiling/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 00f43b23dba09ecca0ff49cf28c013e9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.atdschip.tiling/post-link.sh b/recipes/bioconductor-pd.atdschip.tiling/post-link.sh index d2a00e1bfa7f0..a4d5218c307dd 100644 --- a/recipes/bioconductor-pd.atdschip.tiling/post-link.sh +++ b/recipes/bioconductor-pd.atdschip.tiling/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pd.atdschip.tiling_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/pd.atdschip.tiling_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pd.atdschip.tiling/bioconductor-pd.atdschip.tiling_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pd.atdschip.tiling/bioconductor-pd.atdschip.tiling_0.22.0_src_all.tar.gz" ) MD5="00f43b23dba09ecca0ff49cf28c013e9" diff --git a/recipes/bioconductor-pd.ath1.121501/meta.yaml b/recipes/bioconductor-pd.ath1.121501/meta.yaml index 13924b04a2efc..39fcec46c3a12 100644 --- a/recipes/bioconductor-pd.ath1.121501/meta.yaml +++ b/recipes/bioconductor-pd.ath1.121501/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d7ed8640f0deac552e0083a091e72a72 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.barley1/meta.yaml b/recipes/bioconductor-pd.barley1/meta.yaml index e0f370d4d4795..c6c09c94c43ef 100644 --- a/recipes/bioconductor-pd.barley1/meta.yaml +++ b/recipes/bioconductor-pd.barley1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b8d11f5ad42e75f7a91931b46d449c1a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.bovgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.bovgene.1.0.st/meta.yaml index aa194381d0518..932c319c33241 100644 --- a/recipes/bioconductor-pd.bovgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.bovgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6e9747d13aee7825722562ccc49ad35f build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.bovgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.bovgene.1.1.st/meta.yaml index 7d24c9f98b242..b2e1f86978a91 100644 --- a/recipes/bioconductor-pd.bovgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.bovgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 342246c0a76755fcca458cd723b3e98e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.bovine/meta.yaml b/recipes/bioconductor-pd.bovine/meta.yaml index 1db0936cb8140..5a6e929cbc23c 100644 --- a/recipes/bioconductor-pd.bovine/meta.yaml +++ b/recipes/bioconductor-pd.bovine/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6c7026dba53b54b547b1f1e135d043b3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.bsubtilis/meta.yaml b/recipes/bioconductor-pd.bsubtilis/meta.yaml index 02474e6fc15e0..a6dbe4b87990c 100644 --- a/recipes/bioconductor-pd.bsubtilis/meta.yaml +++ b/recipes/bioconductor-pd.bsubtilis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2261d8b0ec178beb432d71eafd90ec9a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.cangene.1.0.st/meta.yaml b/recipes/bioconductor-pd.cangene.1.0.st/meta.yaml index d525119b0e613..99b7aabaf5c8d 100644 --- a/recipes/bioconductor-pd.cangene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.cangene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0a39d6378193e3f7d31a7210f6766eaf build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.cangene.1.1.st/meta.yaml b/recipes/bioconductor-pd.cangene.1.1.st/meta.yaml index ccc81ff26d976..4dbde469863d5 100644 --- a/recipes/bioconductor-pd.cangene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.cangene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 946074601e7bee72f3b3dd6ae6b3bc33 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.canine.2/meta.yaml b/recipes/bioconductor-pd.canine.2/meta.yaml index 523613a1c82fe..dcc1d30ed35ac 100644 --- a/recipes/bioconductor-pd.canine.2/meta.yaml +++ b/recipes/bioconductor-pd.canine.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bc918d1953a3c7ac7168b60a53405a93 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.canine/meta.yaml b/recipes/bioconductor-pd.canine/meta.yaml index 82eeb879b99f1..83287b4bdd359 100644 --- a/recipes/bioconductor-pd.canine/meta.yaml +++ b/recipes/bioconductor-pd.canine/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5b40fe9e40d0b7f36d338e413d121ba7 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.celegans/meta.yaml b/recipes/bioconductor-pd.celegans/meta.yaml index b3b9f9cc75069..30b1aa75ed259 100644 --- a/recipes/bioconductor-pd.celegans/meta.yaml +++ b/recipes/bioconductor-pd.celegans/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b90ea2e071522bb340c103a1c8270205 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.charm.hg18.example/meta.yaml b/recipes/bioconductor-pd.charm.hg18.example/meta.yaml index 15f5710dd131c..0c54f7a632a62 100644 --- a/recipes/bioconductor-pd.charm.hg18.example/meta.yaml +++ b/recipes/bioconductor-pd.charm.hg18.example/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e201d4281a23c202f57bae1135e226b4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.chicken/meta.yaml b/recipes/bioconductor-pd.chicken/meta.yaml index d22677202f4d5..73185f49f18ce 100644 --- a/recipes/bioconductor-pd.chicken/meta.yaml +++ b/recipes/bioconductor-pd.chicken/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: af79b6d0910621910e72ea374499e5eb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.chigene.1.0.st/meta.yaml b/recipes/bioconductor-pd.chigene.1.0.st/meta.yaml index 92006451eb783..383dd0640923a 100644 --- a/recipes/bioconductor-pd.chigene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.chigene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e37cb047678fabb1801109d4efd16773 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.chigene.1.1.st/meta.yaml b/recipes/bioconductor-pd.chigene.1.1.st/meta.yaml index c7563766adbc8..b0caa840fac42 100644 --- a/recipes/bioconductor-pd.chigene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.chigene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bec602b45961607f5a4571977d54e015 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.chogene.2.0.st/meta.yaml b/recipes/bioconductor-pd.chogene.2.0.st/meta.yaml index 42f4c13727275..b1bc11b7446f9 100644 --- a/recipes/bioconductor-pd.chogene.2.0.st/meta.yaml +++ b/recipes/bioconductor-pd.chogene.2.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 641718e3d172838185a200bac3d32433 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.chogene.2.1.st/meta.yaml b/recipes/bioconductor-pd.chogene.2.1.st/meta.yaml index 2f3bac0f67e73..2a44e896c1a14 100644 --- a/recipes/bioconductor-pd.chogene.2.1.st/meta.yaml +++ b/recipes/bioconductor-pd.chogene.2.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ed25825e58a514cdde70b961bce9b4d7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.citrus/meta.yaml b/recipes/bioconductor-pd.citrus/meta.yaml index 6e52eab5e0f7e..3513131a97e0c 100644 --- a/recipes/bioconductor-pd.citrus/meta.yaml +++ b/recipes/bioconductor-pd.citrus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dee9b3298b84e7dd5152f48ad449b15a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.clariom.d.human/meta.yaml b/recipes/bioconductor-pd.clariom.d.human/meta.yaml index cc5dad07c1b49..1f357899189a4 100644 --- a/recipes/bioconductor-pd.clariom.d.human/meta.yaml +++ b/recipes/bioconductor-pd.clariom.d.human/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9d3505af53cc7c99980f29c527f0f37d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.clariom.s.human.ht/meta.yaml b/recipes/bioconductor-pd.clariom.s.human.ht/meta.yaml index 772c9cded2e48..6e7e140ccf3e3 100644 --- a/recipes/bioconductor-pd.clariom.s.human.ht/meta.yaml +++ b/recipes/bioconductor-pd.clariom.s.human.ht/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 90f910bea1b1aeb550a3f1bdd91d1a06 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.clariom.s.human/meta.yaml b/recipes/bioconductor-pd.clariom.s.human/meta.yaml index 63a8864e953b9..09ded8d78dee2 100644 --- a/recipes/bioconductor-pd.clariom.s.human/meta.yaml +++ b/recipes/bioconductor-pd.clariom.s.human/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 797afe8a6a8041453a34ced3cce34884 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.clariom.s.mouse.ht/meta.yaml b/recipes/bioconductor-pd.clariom.s.mouse.ht/meta.yaml index 64cc73f260a95..c68c3f7d2a2bc 100644 --- a/recipes/bioconductor-pd.clariom.s.mouse.ht/meta.yaml +++ b/recipes/bioconductor-pd.clariom.s.mouse.ht/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9cb6f77cf9666a0d54e1eacb904fd57c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.clariom.s.mouse/meta.yaml b/recipes/bioconductor-pd.clariom.s.mouse/meta.yaml index f9a258eb32e20..d4f9d30ea46cd 100644 --- a/recipes/bioconductor-pd.clariom.s.mouse/meta.yaml +++ b/recipes/bioconductor-pd.clariom.s.mouse/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e3e4ce2b22a78faf525dd6c0c0b2a42d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.clariom.s.rat.ht/meta.yaml b/recipes/bioconductor-pd.clariom.s.rat.ht/meta.yaml index 19a50bd8cf934..252439452031e 100644 --- a/recipes/bioconductor-pd.clariom.s.rat.ht/meta.yaml +++ b/recipes/bioconductor-pd.clariom.s.rat.ht/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: be901eb9e8830f3e5bedf154189a3743 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.clariom.s.rat/meta.yaml b/recipes/bioconductor-pd.clariom.s.rat/meta.yaml index 1a458bbecdc14..cf83e0ba9e857 100644 --- a/recipes/bioconductor-pd.clariom.s.rat/meta.yaml +++ b/recipes/bioconductor-pd.clariom.s.rat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: be464b3eaea8eb8bdbcca6047fce4dea build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.cotton/meta.yaml b/recipes/bioconductor-pd.cotton/meta.yaml index daa074aff1160..c906dbc79e112 100644 --- a/recipes/bioconductor-pd.cotton/meta.yaml +++ b/recipes/bioconductor-pd.cotton/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 78c408902bcefb8c695119767534b393 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.cyngene.1.0.st/meta.yaml b/recipes/bioconductor-pd.cyngene.1.0.st/meta.yaml index 485e87b1a91b6..f0bfb1cd32173 100644 --- a/recipes/bioconductor-pd.cyngene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.cyngene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 784fac6cc92a0fe46dae32c9b737812a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.cyngene.1.1.st/meta.yaml b/recipes/bioconductor-pd.cyngene.1.1.st/meta.yaml index 803e084847fa2..b858492b2c223 100644 --- a/recipes/bioconductor-pd.cyngene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.cyngene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a6217267e3e08a15f70c600918c7d4f6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.cyrgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.cyrgene.1.0.st/meta.yaml index efba5476a88e0..0687c19e92ecf 100644 --- a/recipes/bioconductor-pd.cyrgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.cyrgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 63228c07d3d16d6c62e9c0e83f10a855 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.cyrgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.cyrgene.1.1.st/meta.yaml index 9adfd2f6067dd..473738ee024e8 100644 --- a/recipes/bioconductor-pd.cyrgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.cyrgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dbe3bb580b96aaddcc597de45159320d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.cytogenetics.array/meta.yaml b/recipes/bioconductor-pd.cytogenetics.array/meta.yaml index e5f4f92cdc613..5e607d8ea36a4 100644 --- a/recipes/bioconductor-pd.cytogenetics.array/meta.yaml +++ b/recipes/bioconductor-pd.cytogenetics.array/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8c359ff56a9a558d370dc9a6a54218e0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.drogene.1.0.st/meta.yaml b/recipes/bioconductor-pd.drogene.1.0.st/meta.yaml index f12f37e4dffc1..6582f8b293783 100644 --- a/recipes/bioconductor-pd.drogene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.drogene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 67f92a97a5b78a95693edfdd32b67e93 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.drogene.1.1.st/meta.yaml b/recipes/bioconductor-pd.drogene.1.1.st/meta.yaml index 4ebfafd1ae43d..69f2e401644a9 100644 --- a/recipes/bioconductor-pd.drogene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.drogene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5c63236ea91390d49dbabea63a48f0a2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.drosgenome1/meta.yaml b/recipes/bioconductor-pd.drosgenome1/meta.yaml index 7fc2f126c390e..d048dcba82519 100644 --- a/recipes/bioconductor-pd.drosgenome1/meta.yaml +++ b/recipes/bioconductor-pd.drosgenome1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 59c1a37a7d6a43fc70ff8756bf1195ef build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.drosophila.2/meta.yaml b/recipes/bioconductor-pd.drosophila.2/meta.yaml index 5b0c0dae14fb3..2a2595c5ece47 100644 --- a/recipes/bioconductor-pd.drosophila.2/meta.yaml +++ b/recipes/bioconductor-pd.drosophila.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ddb821e35e722af8dcf0807c6da4fac1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.e.coli.2/meta.yaml b/recipes/bioconductor-pd.e.coli.2/meta.yaml index f04dde9460e68..6c22ed92b5ece 100644 --- a/recipes/bioconductor-pd.e.coli.2/meta.yaml +++ b/recipes/bioconductor-pd.e.coli.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9176faa60a0c252a815b2a74d2f63dd4 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ecoli.asv2/meta.yaml b/recipes/bioconductor-pd.ecoli.asv2/meta.yaml index 6ff4b909082d8..b876ed88067c3 100644 --- a/recipes/bioconductor-pd.ecoli.asv2/meta.yaml +++ b/recipes/bioconductor-pd.ecoli.asv2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d789ddf5a178a9a50c5587ee3ab294a4 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ecoli/meta.yaml b/recipes/bioconductor-pd.ecoli/meta.yaml index 25708769c12c9..d4c75c739508c 100644 --- a/recipes/bioconductor-pd.ecoli/meta.yaml +++ b/recipes/bioconductor-pd.ecoli/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 077e91b2567a32780305f0fb6b126fe9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.elegene.1.0.st/meta.yaml b/recipes/bioconductor-pd.elegene.1.0.st/meta.yaml index 1e0febf6935d6..e55128d73f365 100644 --- a/recipes/bioconductor-pd.elegene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.elegene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b6110c58d5964703c7117e5e0668c901 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.elegene.1.1.st/meta.yaml b/recipes/bioconductor-pd.elegene.1.1.st/meta.yaml index 9d4c3b8d7b06d..c72b4448cc604 100644 --- a/recipes/bioconductor-pd.elegene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.elegene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1dbe166ea347a5a7e240db925d2081c7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.equgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.equgene.1.0.st/meta.yaml index e214dd887d957..d0836de7a30b8 100644 --- a/recipes/bioconductor-pd.equgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.equgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3448f36fdb899f04702be37ffab4c4c7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.equgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.equgene.1.1.st/meta.yaml index 388aab23529e8..4255a9ef58f1c 100644 --- a/recipes/bioconductor-pd.equgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.equgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bed32525513ce25f14d433ce805e7d6c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.feinberg.hg18.me.hx1/meta.yaml b/recipes/bioconductor-pd.feinberg.hg18.me.hx1/meta.yaml index f4fc5a5c6a7ed..6cf4314bffe2e 100644 --- a/recipes/bioconductor-pd.feinberg.hg18.me.hx1/meta.yaml +++ b/recipes/bioconductor-pd.feinberg.hg18.me.hx1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b6eeaf79671bab6f597965009516ce57 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.feinberg.mm8.me.hx1/meta.yaml b/recipes/bioconductor-pd.feinberg.mm8.me.hx1/meta.yaml index 99d7727fa51dd..627bacabed677 100644 --- a/recipes/bioconductor-pd.feinberg.mm8.me.hx1/meta.yaml +++ b/recipes/bioconductor-pd.feinberg.mm8.me.hx1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7332102b69fc9ee087f52d3cdc311d00 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.felgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.felgene.1.0.st/meta.yaml index e5f113841fd41..153a39d3596e6 100644 --- a/recipes/bioconductor-pd.felgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.felgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b7ac0a5cbde5f248aac5d0a7422bd88d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.felgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.felgene.1.1.st/meta.yaml index dfcf5039f39f7..89b43168ec551 100644 --- a/recipes/bioconductor-pd.felgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.felgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 734807a7f3608f6c44c76df7eee04c99 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.fingene.1.0.st/meta.yaml b/recipes/bioconductor-pd.fingene.1.0.st/meta.yaml index 4b6b8b4d5fc5d..4be607f4d9847 100644 --- a/recipes/bioconductor-pd.fingene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.fingene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b79e4f8a52cad3b62e32401bbe74603d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.fingene.1.1.st/meta.yaml b/recipes/bioconductor-pd.fingene.1.1.st/meta.yaml index f4a42c2697e1d..0572f5b5c94c2 100644 --- a/recipes/bioconductor-pd.fingene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.fingene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 29030b14a0e8f8073874fb694a8c0c09 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.genomewidesnp.5/meta.yaml b/recipes/bioconductor-pd.genomewidesnp.5/meta.yaml index 13617f386e211..f1b8b8cf32002 100644 --- a/recipes/bioconductor-pd.genomewidesnp.5/meta.yaml +++ b/recipes/bioconductor-pd.genomewidesnp.5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d02255c861e82fca6a7445ada0c69e5d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.genomewidesnp.6/meta.yaml b/recipes/bioconductor-pd.genomewidesnp.6/meta.yaml index d18015d415c47..2df5ff2e40ee0 100644 --- a/recipes/bioconductor-pd.genomewidesnp.6/meta.yaml +++ b/recipes/bioconductor-pd.genomewidesnp.6/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6e5369234e251c763f4f6c0220fbcb0c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.guigene.1.0.st/meta.yaml b/recipes/bioconductor-pd.guigene.1.0.st/meta.yaml index 5e25e5485ab86..e1a0abc2ffd23 100644 --- a/recipes/bioconductor-pd.guigene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.guigene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 29fe31499931836af72ddd0c7d06acfa build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.guigene.1.1.st/meta.yaml b/recipes/bioconductor-pd.guigene.1.1.st/meta.yaml index 951d66cff5879..a1fb1e3506064 100644 --- a/recipes/bioconductor-pd.guigene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.guigene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: aa3e0389c596a3676322104de5ad2358 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hc.g110/meta.yaml b/recipes/bioconductor-pd.hc.g110/meta.yaml index 8e7464f638384..afdffe432556a 100644 --- a/recipes/bioconductor-pd.hc.g110/meta.yaml +++ b/recipes/bioconductor-pd.hc.g110/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5c5418c588ed28e2fa088c7952c48b91 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.focus/meta.yaml b/recipes/bioconductor-pd.hg.focus/meta.yaml index e0c8d1d55040b..6b913091ca9da 100644 --- a/recipes/bioconductor-pd.hg.focus/meta.yaml +++ b/recipes/bioconductor-pd.hg.focus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a89f344ae7ff8061a8e7968f155f4bcf build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u133.plus.2/meta.yaml b/recipes/bioconductor-pd.hg.u133.plus.2/meta.yaml index 3d76d1ba680dc..353836ba21891 100644 --- a/recipes/bioconductor-pd.hg.u133.plus.2/meta.yaml +++ b/recipes/bioconductor-pd.hg.u133.plus.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8a87aa63c04e84266962bdde5226c06c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u133a.2/meta.yaml b/recipes/bioconductor-pd.hg.u133a.2/meta.yaml index d236cb61a9abc..800152bb5daf2 100644 --- a/recipes/bioconductor-pd.hg.u133a.2/meta.yaml +++ b/recipes/bioconductor-pd.hg.u133a.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a7941473bf081831fad4f4412023d9ee build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u133a.tag/meta.yaml b/recipes/bioconductor-pd.hg.u133a.tag/meta.yaml index 73e53d6f7135d..a6597e2ce996e 100644 --- a/recipes/bioconductor-pd.hg.u133a.tag/meta.yaml +++ b/recipes/bioconductor-pd.hg.u133a.tag/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e090383098d6e1062b290889fba065d5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u133a/meta.yaml b/recipes/bioconductor-pd.hg.u133a/meta.yaml index 6d6611e79f1b4..fa38c1114d13e 100644 --- a/recipes/bioconductor-pd.hg.u133a/meta.yaml +++ b/recipes/bioconductor-pd.hg.u133a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 05b4521f65ab294a5040a0c60198d22c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u133b/meta.yaml b/recipes/bioconductor-pd.hg.u133b/meta.yaml index 33ec153e85dcf..e9fb770e6d7b9 100644 --- a/recipes/bioconductor-pd.hg.u133b/meta.yaml +++ b/recipes/bioconductor-pd.hg.u133b/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c5eac82ad7480571b9f2b442b4a8faa6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u219/meta.yaml b/recipes/bioconductor-pd.hg.u219/meta.yaml index b8d2eaa140551..e9a8cc9ab59c3 100644 --- a/recipes/bioconductor-pd.hg.u219/meta.yaml +++ b/recipes/bioconductor-pd.hg.u219/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dab073d315af47ff3001c72a6d1e7972 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u95a/meta.yaml b/recipes/bioconductor-pd.hg.u95a/meta.yaml index 5d30d18c7ee51..7b8742a161aaf 100644 --- a/recipes/bioconductor-pd.hg.u95a/meta.yaml +++ b/recipes/bioconductor-pd.hg.u95a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a9ad7d6a085e0e3ed7623902e7810da0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u95av2/meta.yaml b/recipes/bioconductor-pd.hg.u95av2/meta.yaml index cd58f3d753d6e..3a2988f258bf2 100644 --- a/recipes/bioconductor-pd.hg.u95av2/meta.yaml +++ b/recipes/bioconductor-pd.hg.u95av2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3a4182b529bc07ec91277a95b1462468 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u95b/meta.yaml b/recipes/bioconductor-pd.hg.u95b/meta.yaml index 68991168757f2..9db9ba5d32ef1 100644 --- a/recipes/bioconductor-pd.hg.u95b/meta.yaml +++ b/recipes/bioconductor-pd.hg.u95b/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a7f10f91e920e191c5009fac8ca79c24 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u95c/meta.yaml b/recipes/bioconductor-pd.hg.u95c/meta.yaml index 22c9a11d4950c..5d82a3905259c 100644 --- a/recipes/bioconductor-pd.hg.u95c/meta.yaml +++ b/recipes/bioconductor-pd.hg.u95c/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 85655bf7a9ecd7aaa867e05899c5e3e4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u95d/meta.yaml b/recipes/bioconductor-pd.hg.u95d/meta.yaml index c7d29da79e788..0fb3dfb19fa80 100644 --- a/recipes/bioconductor-pd.hg.u95d/meta.yaml +++ b/recipes/bioconductor-pd.hg.u95d/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 946701ecfc9cccb46aaeb57a4d6fe1c5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg.u95e/meta.yaml b/recipes/bioconductor-pd.hg.u95e/meta.yaml index a526d5f585ba5..40af0b87f5c96 100644 --- a/recipes/bioconductor-pd.hg.u95e/meta.yaml +++ b/recipes/bioconductor-pd.hg.u95e/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9295e2fd1b4be6ff58477ea5a5de45ee build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hg18.60mer.expr/meta.yaml b/recipes/bioconductor-pd.hg18.60mer.expr/meta.yaml index 60fe60596e1bd..d1173708b8642 100644 --- a/recipes/bioconductor-pd.hg18.60mer.expr/meta.yaml +++ b/recipes/bioconductor-pd.hg18.60mer.expr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ee8d3813f74edce4e796933aa63999fb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ht.hg.u133.plus.pm/meta.yaml b/recipes/bioconductor-pd.ht.hg.u133.plus.pm/meta.yaml index a5d8d9d676752..53e7465a2c9fe 100644 --- a/recipes/bioconductor-pd.ht.hg.u133.plus.pm/meta.yaml +++ b/recipes/bioconductor-pd.ht.hg.u133.plus.pm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5b1c3dd0ab3f8b21154982c197512a7c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ht.hg.u133a/meta.yaml b/recipes/bioconductor-pd.ht.hg.u133a/meta.yaml index 5e1133d4ead2a..2eedd0ae8103a 100644 --- a/recipes/bioconductor-pd.ht.hg.u133a/meta.yaml +++ b/recipes/bioconductor-pd.ht.hg.u133a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 80a82f43083f95e1e9f5e2e2da2e288e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ht.mg.430a/meta.yaml b/recipes/bioconductor-pd.ht.mg.430a/meta.yaml index abea6162c9ea5..0c02dc71d6cf6 100644 --- a/recipes/bioconductor-pd.ht.mg.430a/meta.yaml +++ b/recipes/bioconductor-pd.ht.mg.430a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 65ea4fae22d21ad70998ba3ea034dcc0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hta.2.0/meta.yaml b/recipes/bioconductor-pd.hta.2.0/meta.yaml index 9b91329f998be..adc74c2d155fe 100644 --- a/recipes/bioconductor-pd.hta.2.0/meta.yaml +++ b/recipes/bioconductor-pd.hta.2.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8e13f85ece49c38da73eaf7b2247f5f0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hu6800/meta.yaml b/recipes/bioconductor-pd.hu6800/meta.yaml index 951de974bb597..e6deea1abea7c 100644 --- a/recipes/bioconductor-pd.hu6800/meta.yaml +++ b/recipes/bioconductor-pd.hu6800/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9a3a3edde6d6f31b9e90dc32aa68875d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.huex.1.0.st.v2/meta.yaml b/recipes/bioconductor-pd.huex.1.0.st.v2/meta.yaml index a833a5dc67aae..6f48b861b8424 100644 --- a/recipes/bioconductor-pd.huex.1.0.st.v2/meta.yaml +++ b/recipes/bioconductor-pd.huex.1.0.st.v2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f4c4836c53447890b75b012efbdef3e9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hugene.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.hugene.1.0.st.v1/meta.yaml index 47ca9f5b3b3fb..648bd83ae78d7 100644 --- a/recipes/bioconductor-pd.hugene.1.0.st.v1/meta.yaml +++ b/recipes/bioconductor-pd.hugene.1.0.st.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8cb24c351aee5bf216180e4b19742506 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hugene.1.1.st.v1/meta.yaml b/recipes/bioconductor-pd.hugene.1.1.st.v1/meta.yaml index ede869a42b1c8..8c6dfc388bcf2 100644 --- a/recipes/bioconductor-pd.hugene.1.1.st.v1/meta.yaml +++ b/recipes/bioconductor-pd.hugene.1.1.st.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7a17ee4f7d258792be1d21be7d03deb0 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hugene.2.0.st/meta.yaml b/recipes/bioconductor-pd.hugene.2.0.st/meta.yaml index 177992d64913d..219f0c4bd9d28 100644 --- a/recipes/bioconductor-pd.hugene.2.0.st/meta.yaml +++ b/recipes/bioconductor-pd.hugene.2.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e484209aa0c2a839c3445d91c1a799ce build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.hugene.2.1.st/meta.yaml b/recipes/bioconductor-pd.hugene.2.1.st/meta.yaml index 1d1a8f7ebffe8..9a889227ada6e 100644 --- a/recipes/bioconductor-pd.hugene.2.1.st/meta.yaml +++ b/recipes/bioconductor-pd.hugene.2.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 164227f10b87f87059e4ae27b40f5238 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.maize/meta.yaml b/recipes/bioconductor-pd.maize/meta.yaml index 1a73d306ae326..e090f13082db8 100644 --- a/recipes/bioconductor-pd.maize/meta.yaml +++ b/recipes/bioconductor-pd.maize/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a1689518c8525d3dfa97e870f90b7a7b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mapping250k.nsp/meta.yaml b/recipes/bioconductor-pd.mapping250k.nsp/meta.yaml index 265125f1a6d61..0281890adfc34 100644 --- a/recipes/bioconductor-pd.mapping250k.nsp/meta.yaml +++ b/recipes/bioconductor-pd.mapping250k.nsp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2786d00e1d621a9c415a599b4afe838b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mapping250k.sty/meta.yaml b/recipes/bioconductor-pd.mapping250k.sty/meta.yaml index 2c39a06472920..08a493c8d43bd 100644 --- a/recipes/bioconductor-pd.mapping250k.sty/meta.yaml +++ b/recipes/bioconductor-pd.mapping250k.sty/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0db5992855eaf9b8f61f8bc2e57ef347 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mapping50k.hind240/meta.yaml b/recipes/bioconductor-pd.mapping50k.hind240/meta.yaml index 37c2c58d44cb9..02b99d282e3f7 100644 --- a/recipes/bioconductor-pd.mapping50k.hind240/meta.yaml +++ b/recipes/bioconductor-pd.mapping50k.hind240/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 83615dcb01eb381f0c69e07504809094 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mapping50k.xba240/meta.yaml b/recipes/bioconductor-pd.mapping50k.xba240/meta.yaml index c916d5327b108..46bd3e56e8aff 100644 --- a/recipes/bioconductor-pd.mapping50k.xba240/meta.yaml +++ b/recipes/bioconductor-pd.mapping50k.xba240/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eb0f9250fe0d7b590ca9938fee88f2e7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.margene.1.0.st/meta.yaml b/recipes/bioconductor-pd.margene.1.0.st/meta.yaml index 732fd3842c15a..98ba6ea4723b4 100644 --- a/recipes/bioconductor-pd.margene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.margene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f670b192e4b453f13bb7cae154b5de42 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.margene.1.1.st/meta.yaml b/recipes/bioconductor-pd.margene.1.1.st/meta.yaml index 93e98f5948781..cf2f0ee872faf 100644 --- a/recipes/bioconductor-pd.margene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.margene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: efd71aeb9c5ab36c2ddeccf9cb66ddec build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.medgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.medgene.1.0.st/meta.yaml index c2fcc4ba9e73a..c8590789edf0e 100644 --- a/recipes/bioconductor-pd.medgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.medgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2a0048ccd5310ec5c45bb691f3c25885 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.medgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.medgene.1.1.st/meta.yaml index 5ff5f0ab2ea2c..9dd849011bed9 100644 --- a/recipes/bioconductor-pd.medgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.medgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d96894cfea509734af62110311100142 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.medicago/meta.yaml b/recipes/bioconductor-pd.medicago/meta.yaml index 45690d79f6ec3..1813fe38468f3 100644 --- a/recipes/bioconductor-pd.medicago/meta.yaml +++ b/recipes/bioconductor-pd.medicago/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0e3f00777919374619a9dc8244167068 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mg.u74a/meta.yaml b/recipes/bioconductor-pd.mg.u74a/meta.yaml index 75881b76817e2..2b77a3d57ad7b 100644 --- a/recipes/bioconductor-pd.mg.u74a/meta.yaml +++ b/recipes/bioconductor-pd.mg.u74a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a855c7d2b80e9b8f9bbc1a3f83aca799 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mg.u74av2/meta.yaml b/recipes/bioconductor-pd.mg.u74av2/meta.yaml index df19fe5f7c0bc..4243b37f8fb10 100644 --- a/recipes/bioconductor-pd.mg.u74av2/meta.yaml +++ b/recipes/bioconductor-pd.mg.u74av2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 01c6e4da9c2ad0f1939482284dd5b421 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mg.u74b/meta.yaml b/recipes/bioconductor-pd.mg.u74b/meta.yaml index 7d9d5cb7960bf..4cc44a04b2f63 100644 --- a/recipes/bioconductor-pd.mg.u74b/meta.yaml +++ b/recipes/bioconductor-pd.mg.u74b/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 47bb81abaceba6dfaab3e0987f28706c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mg.u74bv2/meta.yaml b/recipes/bioconductor-pd.mg.u74bv2/meta.yaml index bc8262f9b5ad4..d9a6f97307f28 100644 --- a/recipes/bioconductor-pd.mg.u74bv2/meta.yaml +++ b/recipes/bioconductor-pd.mg.u74bv2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dbb6cd5b16bd5cafbf654744bc2d5c5c build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mg.u74c/meta.yaml b/recipes/bioconductor-pd.mg.u74c/meta.yaml index 22db99658c4df..010836e8e2cf1 100644 --- a/recipes/bioconductor-pd.mg.u74c/meta.yaml +++ b/recipes/bioconductor-pd.mg.u74c/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 01f10eae99481f03d1d5a6a2c2f01733 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mg.u74cv2/meta.yaml b/recipes/bioconductor-pd.mg.u74cv2/meta.yaml index d7ee676862cd9..652199345772f 100644 --- a/recipes/bioconductor-pd.mg.u74cv2/meta.yaml +++ b/recipes/bioconductor-pd.mg.u74cv2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b60943b90b95a24fcf93f8c245fd88be build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mirna.1.0/meta.yaml b/recipes/bioconductor-pd.mirna.1.0/meta.yaml index 89ee7e3c2c677..c9c4a209f19a0 100644 --- a/recipes/bioconductor-pd.mirna.1.0/meta.yaml +++ b/recipes/bioconductor-pd.mirna.1.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8dfeb82a9da6d6f73e5fb716a2867a34 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mirna.2.0/meta.yaml b/recipes/bioconductor-pd.mirna.2.0/meta.yaml index 463b5427dd1fb..51ffae9b20d68 100644 --- a/recipes/bioconductor-pd.mirna.2.0/meta.yaml +++ b/recipes/bioconductor-pd.mirna.2.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: aab53cbc62fbd7727ca0303aeb1dca13 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mirna.3.0/meta.yaml b/recipes/bioconductor-pd.mirna.3.0/meta.yaml index 4abc5bddc3c78..994958fb35e96 100644 --- a/recipes/bioconductor-pd.mirna.3.0/meta.yaml +++ b/recipes/bioconductor-pd.mirna.3.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1265f1969c618b3b5121e6a77ba57009 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mirna.3.1/meta.yaml b/recipes/bioconductor-pd.mirna.3.1/meta.yaml index b94a56d295263..8a1ed28802a71 100644 --- a/recipes/bioconductor-pd.mirna.3.1/meta.yaml +++ b/recipes/bioconductor-pd.mirna.3.1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 296b3584ee5e9416c9018353d3e29c6c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mirna.4.0/meta.yaml b/recipes/bioconductor-pd.mirna.4.0/meta.yaml index 33eff9a274866..ba090fe4369cd 100644 --- a/recipes/bioconductor-pd.mirna.4.0/meta.yaml +++ b/recipes/bioconductor-pd.mirna.4.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cae1a18c02aaa20a2f05172103e9d938 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.moe430a/meta.yaml b/recipes/bioconductor-pd.moe430a/meta.yaml index 680816727302c..57c53dffee0dd 100644 --- a/recipes/bioconductor-pd.moe430a/meta.yaml +++ b/recipes/bioconductor-pd.moe430a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f9a7cb62140e42c2a82177548a1c73fb build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.moe430b/meta.yaml b/recipes/bioconductor-pd.moe430b/meta.yaml index 7726989da8cab..b2868ac037848 100644 --- a/recipes/bioconductor-pd.moe430b/meta.yaml +++ b/recipes/bioconductor-pd.moe430b/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c19d2ee5e7e87703cf73afa33a5f3156 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.moex.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.moex.1.0.st.v1/meta.yaml index ea11601f9f4c2..1393d5b9b4faf 100644 --- a/recipes/bioconductor-pd.moex.1.0.st.v1/meta.yaml +++ b/recipes/bioconductor-pd.moex.1.0.st.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 57427e63b2d44258c12d796eada1897b build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mogene.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.mogene.1.0.st.v1/meta.yaml index eb70a556dd8f4..99908e3abb786 100644 --- a/recipes/bioconductor-pd.mogene.1.0.st.v1/meta.yaml +++ b/recipes/bioconductor-pd.mogene.1.0.st.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c3767385af3b9a120c777adb6d6e3364 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mogene.1.1.st.v1/meta.yaml b/recipes/bioconductor-pd.mogene.1.1.st.v1/meta.yaml index 3a15e52102906..0c07c4d47902f 100644 --- a/recipes/bioconductor-pd.mogene.1.1.st.v1/meta.yaml +++ b/recipes/bioconductor-pd.mogene.1.1.st.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3d6c5d29e4d8a0b0152e109b68f82c37 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mogene.2.0.st/meta.yaml b/recipes/bioconductor-pd.mogene.2.0.st/meta.yaml index 8a1f8117a155c..15960056982db 100644 --- a/recipes/bioconductor-pd.mogene.2.0.st/meta.yaml +++ b/recipes/bioconductor-pd.mogene.2.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 71326d6bd85de02490171696f923d053 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mogene.2.1.st/meta.yaml b/recipes/bioconductor-pd.mogene.2.1.st/meta.yaml index 3227841b626d0..53d840d692bbc 100644 --- a/recipes/bioconductor-pd.mogene.2.1.st/meta.yaml +++ b/recipes/bioconductor-pd.mogene.2.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2c7fc5644eae98359cb945ff16d072a2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mouse430.2/meta.yaml b/recipes/bioconductor-pd.mouse430.2/meta.yaml index 73f9fd51f1c48..85f02d3647480 100644 --- a/recipes/bioconductor-pd.mouse430.2/meta.yaml +++ b/recipes/bioconductor-pd.mouse430.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7f37397a57b06d15101ef86fa6242ca4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mouse430a.2/meta.yaml b/recipes/bioconductor-pd.mouse430a.2/meta.yaml index f674aebea6606..b0435c9bb58a2 100644 --- a/recipes/bioconductor-pd.mouse430a.2/meta.yaml +++ b/recipes/bioconductor-pd.mouse430a.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0c28f564a1fa23f59c936d42c156796d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mta.1.0/meta.yaml b/recipes/bioconductor-pd.mta.1.0/meta.yaml index f6d7d098f6c77..5fe71c0e95ba6 100644 --- a/recipes/bioconductor-pd.mta.1.0/meta.yaml +++ b/recipes/bioconductor-pd.mta.1.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0f737b4f1f1353733e56e2df637f554b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mu11ksuba/meta.yaml b/recipes/bioconductor-pd.mu11ksuba/meta.yaml index eb49e8344da13..0dcf456e453cd 100644 --- a/recipes/bioconductor-pd.mu11ksuba/meta.yaml +++ b/recipes/bioconductor-pd.mu11ksuba/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 56be58b3f444ccb9572dc4c3882964b2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.mu11ksubb/meta.yaml b/recipes/bioconductor-pd.mu11ksubb/meta.yaml index 66d202cb81841..605cca76d44b4 100644 --- a/recipes/bioconductor-pd.mu11ksubb/meta.yaml +++ b/recipes/bioconductor-pd.mu11ksubb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c45b0ebe777b99cec38499826cc1b457 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.nugo.hs1a520180/meta.yaml b/recipes/bioconductor-pd.nugo.hs1a520180/meta.yaml index 182d5760f20ff..56966689b63e9 100644 --- a/recipes/bioconductor-pd.nugo.hs1a520180/meta.yaml +++ b/recipes/bioconductor-pd.nugo.hs1a520180/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 88a836472f0f9aab2e1d54e4bad7d6af build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.nugo.mm1a520177/meta.yaml b/recipes/bioconductor-pd.nugo.mm1a520177/meta.yaml index 238ea5d8a0eb4..5c232a6973178 100644 --- a/recipes/bioconductor-pd.nugo.mm1a520177/meta.yaml +++ b/recipes/bioconductor-pd.nugo.mm1a520177/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5cd64895eaddaf4cae1c48db9468c079 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ovigene.1.0.st/meta.yaml b/recipes/bioconductor-pd.ovigene.1.0.st/meta.yaml index 39cbf8461819c..84b14af253dcb 100644 --- a/recipes/bioconductor-pd.ovigene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.ovigene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 88cfedfe10dd357539305051a69d31a1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ovigene.1.1.st/meta.yaml b/recipes/bioconductor-pd.ovigene.1.1.st/meta.yaml index 374890cf4f83c..c2ad5b67ed31a 100644 --- a/recipes/bioconductor-pd.ovigene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.ovigene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d6158cacd32a1892975fddd8dc8bb3f2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.pae.g1a/meta.yaml b/recipes/bioconductor-pd.pae.g1a/meta.yaml index beb8fd027bf39..6fd19ac4fae54 100644 --- a/recipes/bioconductor-pd.pae.g1a/meta.yaml +++ b/recipes/bioconductor-pd.pae.g1a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d96462eb35c63b30772bccae2a27a8cd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.plasmodium.anopheles/meta.yaml b/recipes/bioconductor-pd.plasmodium.anopheles/meta.yaml index 9db914d6a0ef4..c9e677283965e 100644 --- a/recipes/bioconductor-pd.plasmodium.anopheles/meta.yaml +++ b/recipes/bioconductor-pd.plasmodium.anopheles/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ae55b1451ceaed951f68213c0433f3d0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.poplar/meta.yaml b/recipes/bioconductor-pd.poplar/meta.yaml index 6ad3de0e624b3..d3129b70131b3 100644 --- a/recipes/bioconductor-pd.poplar/meta.yaml +++ b/recipes/bioconductor-pd.poplar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9c33b7528e5a47654aeacf61b71058a8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.porcine/meta.yaml b/recipes/bioconductor-pd.porcine/meta.yaml index 6ad0cd2a0c162..003c0b99909e2 100644 --- a/recipes/bioconductor-pd.porcine/meta.yaml +++ b/recipes/bioconductor-pd.porcine/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5df404babadb1d6faef73e249c819a72 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.porgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.porgene.1.0.st/meta.yaml index 0ac081ca61ed4..4de3cb6d39072 100644 --- a/recipes/bioconductor-pd.porgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.porgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 203fc56b0e2904fa7063c4a325e038f1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.porgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.porgene.1.1.st/meta.yaml index a51a3a6381224..f897a7d4052fa 100644 --- a/recipes/bioconductor-pd.porgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.porgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3a31d325861925a7428241207c461a1d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rabgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rabgene.1.0.st/meta.yaml index 1d7ff6261f671..c6a9cc3b3cd29 100644 --- a/recipes/bioconductor-pd.rabgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.rabgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7f1e33f4767a4c4653bdaff2b79989a0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rabgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rabgene.1.1.st/meta.yaml index dbcb17933d072..7648f67c73c06 100644 --- a/recipes/bioconductor-pd.rabgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.rabgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2492695661309f5e6628612685460ee5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rae230a/meta.yaml b/recipes/bioconductor-pd.rae230a/meta.yaml index 231b670305943..565486201ec19 100644 --- a/recipes/bioconductor-pd.rae230a/meta.yaml +++ b/recipes/bioconductor-pd.rae230a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fa4a1c29d3457b1db82b1010c5f72412 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rae230b/meta.yaml b/recipes/bioconductor-pd.rae230b/meta.yaml index 9cd21e6912e91..f28ba0d0ebb76 100644 --- a/recipes/bioconductor-pd.rae230b/meta.yaml +++ b/recipes/bioconductor-pd.rae230b/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 10e2e70bb7538119127cd65f636f93b6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.raex.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.raex.1.0.st.v1/meta.yaml index 844c439cb5f85..b1ef0590ce4a0 100644 --- a/recipes/bioconductor-pd.raex.1.0.st.v1/meta.yaml +++ b/recipes/bioconductor-pd.raex.1.0.st.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e2160b549f63ffcc9222d88d82d4d393 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ragene.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.ragene.1.0.st.v1/meta.yaml index 39dcad3480d99..3c73051c0838f 100644 --- a/recipes/bioconductor-pd.ragene.1.0.st.v1/meta.yaml +++ b/recipes/bioconductor-pd.ragene.1.0.st.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 122cb69603e705218d01d70f48e90cad build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ragene.1.1.st.v1/meta.yaml b/recipes/bioconductor-pd.ragene.1.1.st.v1/meta.yaml index 77278cc7bd1ec..e45974c37892d 100644 --- a/recipes/bioconductor-pd.ragene.1.1.st.v1/meta.yaml +++ b/recipes/bioconductor-pd.ragene.1.1.st.v1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7301ab6472849395ccb800c39807e969 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ragene.2.0.st/meta.yaml b/recipes/bioconductor-pd.ragene.2.0.st/meta.yaml index 2446f9a867a26..8f3388759984e 100644 --- a/recipes/bioconductor-pd.ragene.2.0.st/meta.yaml +++ b/recipes/bioconductor-pd.ragene.2.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 37157b09f009fef368b54e47711c313b build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.ragene.2.1.st/meta.yaml b/recipes/bioconductor-pd.ragene.2.1.st/meta.yaml index 13d93ce1212c1..b891b6f134faf 100644 --- a/recipes/bioconductor-pd.ragene.2.1.st/meta.yaml +++ b/recipes/bioconductor-pd.ragene.2.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 53adfa5ff2c7e466da83b807dbc7b237 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rat230.2/meta.yaml b/recipes/bioconductor-pd.rat230.2/meta.yaml index 81dfdd6761a20..da02cf364bb1c 100644 --- a/recipes/bioconductor-pd.rat230.2/meta.yaml +++ b/recipes/bioconductor-pd.rat230.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 286b1a7868ef6c795ebeb6dd8a5d5920 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rcngene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rcngene.1.0.st/meta.yaml index 8a4513486d345..f0855efc22486 100644 --- a/recipes/bioconductor-pd.rcngene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.rcngene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9c7c5ef4d4f5ed92d9130d77a99a0685 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rcngene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rcngene.1.1.st/meta.yaml index 687539c44c92e..92cb3d613b9f2 100644 --- a/recipes/bioconductor-pd.rcngene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.rcngene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9781549447d90b5423e820fff5cc6273 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rg.u34a/meta.yaml b/recipes/bioconductor-pd.rg.u34a/meta.yaml index 199c3c8cf9258..5222b1f67176b 100644 --- a/recipes/bioconductor-pd.rg.u34a/meta.yaml +++ b/recipes/bioconductor-pd.rg.u34a/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ac3a6cc203dabb8faab85b97f1a7ae3c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rg.u34b/meta.yaml b/recipes/bioconductor-pd.rg.u34b/meta.yaml index 6c2a5a4821c1a..26964f20ddfd2 100644 --- a/recipes/bioconductor-pd.rg.u34b/meta.yaml +++ b/recipes/bioconductor-pd.rg.u34b/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 757966b66795d388c7169816d31977ad build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rg.u34c/meta.yaml b/recipes/bioconductor-pd.rg.u34c/meta.yaml index 2c497c1c4c2b2..3a98bf0fc5fc0 100644 --- a/recipes/bioconductor-pd.rg.u34c/meta.yaml +++ b/recipes/bioconductor-pd.rg.u34c/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bc9cb7b208972ac2901235bdabdee5b2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rhegene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rhegene.1.0.st/meta.yaml index bd4fdd03864cc..31adf7d1d8213 100644 --- a/recipes/bioconductor-pd.rhegene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.rhegene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6469add6928e663529df4df98fcdd7a8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rhegene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rhegene.1.1.st/meta.yaml index 26fdc1aa11919..f4aa2b3c56526 100644 --- a/recipes/bioconductor-pd.rhegene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.rhegene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4f63424ab52283a95731767dce6623cd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rhesus/meta.yaml b/recipes/bioconductor-pd.rhesus/meta.yaml index 544f40d04b0b1..668f8580f6484 100644 --- a/recipes/bioconductor-pd.rhesus/meta.yaml +++ b/recipes/bioconductor-pd.rhesus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 51efcfe1384ac956ff93bf0530965054 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rice/meta.yaml b/recipes/bioconductor-pd.rice/meta.yaml index b3f0ccee299ef..cf34d15a62acc 100644 --- a/recipes/bioconductor-pd.rice/meta.yaml +++ b/recipes/bioconductor-pd.rice/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9c456981b3d0b99a96ac6c71e3eb7c8a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rjpgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rjpgene.1.0.st/meta.yaml index feb648b548308..7ef6e3d0a2738 100644 --- a/recipes/bioconductor-pd.rjpgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.rjpgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 066f5dbacc1110e42ce4d457ad3b9306 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rjpgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rjpgene.1.1.st/meta.yaml index c2d410c530792..1915813a7e5ed 100644 --- a/recipes/bioconductor-pd.rjpgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.rjpgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 265503774b15e0f4e71ac53a276a80f2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rn.u34/meta.yaml b/recipes/bioconductor-pd.rn.u34/meta.yaml index c1d2b5e332954..9656fbc7a16c4 100644 --- a/recipes/bioconductor-pd.rn.u34/meta.yaml +++ b/recipes/bioconductor-pd.rn.u34/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1728c547f1383bffab330796505119ec build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rta.1.0/meta.yaml b/recipes/bioconductor-pd.rta.1.0/meta.yaml index ef49bfa25851a..526c2d607fc65 100644 --- a/recipes/bioconductor-pd.rta.1.0/meta.yaml +++ b/recipes/bioconductor-pd.rta.1.0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 90752a892a103c7fe4cd6c86e61a61db build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rusgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rusgene.1.0.st/meta.yaml index 6f80424ebd7b3..8760af5b7ae89 100644 --- a/recipes/bioconductor-pd.rusgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.rusgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0b9b00fee58ef211e041395052344483 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.rusgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rusgene.1.1.st/meta.yaml index 750d1ff78f620..85d8e91ee83f2 100644 --- a/recipes/bioconductor-pd.rusgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.rusgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 228837c2de4a4b106806cb7f384564fa build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.s.aureus/meta.yaml b/recipes/bioconductor-pd.s.aureus/meta.yaml index a139ad89450f7..3895597afd508 100644 --- a/recipes/bioconductor-pd.s.aureus/meta.yaml +++ b/recipes/bioconductor-pd.s.aureus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f173ae6e4316aaa2eafbde92d5868a5a build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.soybean/meta.yaml b/recipes/bioconductor-pd.soybean/meta.yaml index 647327fd61c93..0ad3ddefc898e 100644 --- a/recipes/bioconductor-pd.soybean/meta.yaml +++ b/recipes/bioconductor-pd.soybean/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6dbe167be9d40c1d9096485afb4525f0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.soygene.1.0.st/meta.yaml b/recipes/bioconductor-pd.soygene.1.0.st/meta.yaml index 42227891425b8..6f60db2391cce 100644 --- a/recipes/bioconductor-pd.soygene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.soygene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b264df0648ec35d04f91e0ef8e26ac95 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.soygene.1.1.st/meta.yaml b/recipes/bioconductor-pd.soygene.1.1.st/meta.yaml index d8d01bc252a08..f4e2aaa87d0f7 100644 --- a/recipes/bioconductor-pd.soygene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.soygene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4a911a4a4b5de927fe6239e500a2993f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.sugar.cane/meta.yaml b/recipes/bioconductor-pd.sugar.cane/meta.yaml index c4136beac1260..1f53b5eb5b860 100644 --- a/recipes/bioconductor-pd.sugar.cane/meta.yaml +++ b/recipes/bioconductor-pd.sugar.cane/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bd7eb8b1a1c9ac77359358a5347330fb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.tomato/meta.yaml b/recipes/bioconductor-pd.tomato/meta.yaml index 0d20aa0128631..30232a8433d17 100644 --- a/recipes/bioconductor-pd.tomato/meta.yaml +++ b/recipes/bioconductor-pd.tomato/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ce78f6ee43d72e017608413dd4d50580 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.u133.x3p/meta.yaml b/recipes/bioconductor-pd.u133.x3p/meta.yaml index cff64dcf99e60..3a3be70d450d2 100644 --- a/recipes/bioconductor-pd.u133.x3p/meta.yaml +++ b/recipes/bioconductor-pd.u133.x3p/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e3f343e32273667f851e26d7b8a7a5db build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.vitis.vinifera/meta.yaml b/recipes/bioconductor-pd.vitis.vinifera/meta.yaml index 8b97f4c0d0b72..ef9134757ec01 100644 --- a/recipes/bioconductor-pd.vitis.vinifera/meta.yaml +++ b/recipes/bioconductor-pd.vitis.vinifera/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 104a8ac33a9baa25a61f953679795696 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.wheat/meta.yaml b/recipes/bioconductor-pd.wheat/meta.yaml index 7e5dde54ee908..8b39945a9859e 100644 --- a/recipes/bioconductor-pd.wheat/meta.yaml +++ b/recipes/bioconductor-pd.wheat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 38a7183c8d3b874cf62391a9e9169bb9 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.x.laevis.2/meta.yaml b/recipes/bioconductor-pd.x.laevis.2/meta.yaml index 1bc470eb93b5c..81639fdbcf17b 100644 --- a/recipes/bioconductor-pd.x.laevis.2/meta.yaml +++ b/recipes/bioconductor-pd.x.laevis.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 32416957e3cdc11ad4dbfcd9141ff113 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.x.tropicalis/meta.yaml b/recipes/bioconductor-pd.x.tropicalis/meta.yaml index 6ee82938608f1..c216f138c80e9 100644 --- a/recipes/bioconductor-pd.x.tropicalis/meta.yaml +++ b/recipes/bioconductor-pd.x.tropicalis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 79a4de91831e4b0153495e12b9c6e8d3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.xenopus.laevis/meta.yaml b/recipes/bioconductor-pd.xenopus.laevis/meta.yaml index a2dded70c1e1b..80be261b22dff 100644 --- a/recipes/bioconductor-pd.xenopus.laevis/meta.yaml +++ b/recipes/bioconductor-pd.xenopus.laevis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6d5c2c9e8e3891770b1c6e9dcd823c0d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.yeast.2/meta.yaml b/recipes/bioconductor-pd.yeast.2/meta.yaml index 1217c843c5d1e..d4611b4fbfc95 100644 --- a/recipes/bioconductor-pd.yeast.2/meta.yaml +++ b/recipes/bioconductor-pd.yeast.2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 780f5139ee9cda46c9e38122538ce129 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.yg.s98/meta.yaml b/recipes/bioconductor-pd.yg.s98/meta.yaml index 2ebecd1c9a955..e11a5eab926a2 100644 --- a/recipes/bioconductor-pd.yg.s98/meta.yaml +++ b/recipes/bioconductor-pd.yg.s98/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: caec3e8f29918f078b2dc7c76f4a74e2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.zebgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.zebgene.1.0.st/meta.yaml index f7d381dec47a4..1d16fbf8f7f63 100644 --- a/recipes/bioconductor-pd.zebgene.1.0.st/meta.yaml +++ b/recipes/bioconductor-pd.zebgene.1.0.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 54fcf757b8069e95dd7e2f3ff74ae050 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.zebgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.zebgene.1.1.st/meta.yaml index dd24a601647ff..58d3292629ceb 100644 --- a/recipes/bioconductor-pd.zebgene.1.1.st/meta.yaml +++ b/recipes/bioconductor-pd.zebgene.1.1.st/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d87028cd9024bc33be518635cf2f48fc build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pd.zebrafish/meta.yaml b/recipes/bioconductor-pd.zebrafish/meta.yaml index 2f8865fcc8417..c53a419c9b07c 100644 --- a/recipes/bioconductor-pd.zebrafish/meta.yaml +++ b/recipes/bioconductor-pd.zebrafish/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 101f09a9d9304d1d8fbcc7f4812897b1 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pdinfobuilder/meta.yaml b/recipes/bioconductor-pdinfobuilder/meta.yaml index 3e514d729071e..f932b23b34100 100644 --- a/recipes/bioconductor-pdinfobuilder/meta.yaml +++ b/recipes/bioconductor-pdinfobuilder/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 49c010d594178513df2396a1a0b69fb2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-peca/meta.yaml b/recipes/bioconductor-peca/meta.yaml index fecee38093256..250d4e634b123 100644 --- a/recipes/bioconductor-peca/meta.yaml +++ b/recipes/bioconductor-peca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b0a710433143e3c8529b31953dd75096 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pedbarrayv10.db/meta.yaml b/recipes/bioconductor-pedbarrayv10.db/meta.yaml index 2b12844a8aa72..2a85da45e4b57 100644 --- a/recipes/bioconductor-pedbarrayv10.db/meta.yaml +++ b/recipes/bioconductor-pedbarrayv10.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 25acc3bfee229015ecca1c7d688e5168 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pedbarrayv9.db/meta.yaml b/recipes/bioconductor-pedbarrayv9.db/meta.yaml index b9ec635cc852e..337c15d80fb23 100644 --- a/recipes/bioconductor-pedbarrayv9.db/meta.yaml +++ b/recipes/bioconductor-pedbarrayv9.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: da4b2f9c0a672e0c9ee53f017bacaff7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pepdat/meta.yaml b/recipes/bioconductor-pepdat/meta.yaml index 588727af6cee7..c6b81f6f2dc3d 100644 --- a/recipes/bioconductor-pepdat/meta.yaml +++ b/recipes/bioconductor-pepdat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c72c91f64f3099c7ac03fe30244a4a9d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pepdat/post-link.sh b/recipes/bioconductor-pepdat/post-link.sh index c7ab78c0747aa..188186607543a 100644 --- a/recipes/bioconductor-pepdat/post-link.sh +++ b/recipes/bioconductor-pepdat/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pepDat_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/pepDat_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pepdat/bioconductor-pepdat_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pepdat/bioconductor-pepdat_1.4.0_src_all.tar.gz" ) MD5="c72c91f64f3099c7ac03fe30244a4a9d" diff --git a/recipes/bioconductor-pepsnmr/meta.yaml b/recipes/bioconductor-pepsnmr/meta.yaml index 2bef4b5123ba2..ebd1d1504cbae 100644 --- a/recipes/bioconductor-pepsnmr/meta.yaml +++ b/recipes/bioconductor-pepsnmr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.1" %} {% set name = "PepsNMR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 4b0d8a295ca2dc9bfe5ec4a6e9befd9f + md5: a7651de5219e8a045f9f11280b59e07d build: number: 0 rpaths: diff --git a/recipes/bioconductor-pepsnmrdata/meta.yaml b/recipes/bioconductor-pepsnmrdata/meta.yaml index d354c9b0dfbb3..7308d1ee8a1e3 100644 --- a/recipes/bioconductor-pepsnmrdata/meta.yaml +++ b/recipes/bioconductor-pepsnmrdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4426ad09c50010889fece7df54bf184d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pepsnmrdata/post-link.sh b/recipes/bioconductor-pepsnmrdata/post-link.sh index 1d206dca92bd6..ab4ae44f1d07c 100644 --- a/recipes/bioconductor-pepsnmrdata/post-link.sh +++ b/recipes/bioconductor-pepsnmrdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PepsNMRData_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/PepsNMRData_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pepsnmrdata/bioconductor-pepsnmrdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pepsnmrdata/bioconductor-pepsnmrdata_1.2.0_src_all.tar.gz" ) MD5="4426ad09c50010889fece7df54bf184d" diff --git a/recipes/bioconductor-pepstat/meta.yaml b/recipes/bioconductor-pepstat/meta.yaml index 0002934d68cb8..76ea7bfeb6c49 100644 --- a/recipes/bioconductor-pepstat/meta.yaml +++ b/recipes/bioconductor-pepstat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e78ab9a2f6eb8002061befa6ff303c68 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pepxmltab/meta.yaml b/recipes/bioconductor-pepxmltab/meta.yaml index 6242f81f06d8f..1758cd6954c83 100644 --- a/recipes/bioconductor-pepxmltab/meta.yaml +++ b/recipes/bioconductor-pepxmltab/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 602907c5343bbd61c7b0692fe5ad9202 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-perturbatr/meta.yaml b/recipes/bioconductor-perturbatr/meta.yaml index 7af0b7b6e859a..9e1f99e5073f8 100644 --- a/recipes/bioconductor-perturbatr/meta.yaml +++ b/recipes/bioconductor-perturbatr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dcc3d7550c1dd7cfdd7d36e972ffc36d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pfam.db/meta.yaml b/recipes/bioconductor-pfam.db/meta.yaml index ac0998956b8b3..a1634f9182a0d 100644 --- a/recipes/bioconductor-pfam.db/meta.yaml +++ b/recipes/bioconductor-pfam.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5439ecd3a3caf591e77ffcd01e70dea5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pfam.db/post-link.sh b/recipes/bioconductor-pfam.db/post-link.sh index 1753291590f9b..599f17cbf8d76 100644 --- a/recipes/bioconductor-pfam.db/post-link.sh +++ b/recipes/bioconductor-pfam.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PFAM.db_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/PFAM.db_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pfam.db/bioconductor-pfam.db_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pfam.db/bioconductor-pfam.db_3.8.2_src_all.tar.gz" ) MD5="5439ecd3a3caf591e77ffcd01e70dea5" diff --git a/recipes/bioconductor-pga/meta.yaml b/recipes/bioconductor-pga/meta.yaml index 89911f3905186..41ae3360cd673 100644 --- a/recipes/bioconductor-pga/meta.yaml +++ b/recipes/bioconductor-pga/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b2a21d6f3de2c4b7472feffcc39067fa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pgca/meta.yaml b/recipes/bioconductor-pgca/meta.yaml index 3d448c5f28ed6..0d997531fd1a1 100644 --- a/recipes/bioconductor-pgca/meta.yaml +++ b/recipes/bioconductor-pgca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0294ac9de15c3e72b20f63e3dfa2ea46 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pgsea/meta.yaml b/recipes/bioconductor-pgsea/meta.yaml index 1d00c97c02e6d..73b240026e39c 100644 --- a/recipes/bioconductor-pgsea/meta.yaml +++ b/recipes/bioconductor-pgsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 93b85788807b8e3a877613edb930b59d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-phantasus/meta.yaml b/recipes/bioconductor-phantasus/meta.yaml index 22c9612d257b1..d535370f2f970 100644 --- a/recipes/bioconductor-phantasus/meta.yaml +++ b/recipes/bioconductor-phantasus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7baaeca928110d421ce44d191994569e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pharmacogx/meta.yaml b/recipes/bioconductor-pharmacogx/meta.yaml index 4dc222a58a8e8..620afd961a7c3 100644 --- a/recipes/bioconductor-pharmacogx/meta.yaml +++ b/recipes/bioconductor-pharmacogx/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.14.0" %} +{% set version = "1.14.1" %} {% set name = "PharmacoGx" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 2bad8919504392b6a04212b16d7e2e2a + md5: 8b291ac69f88dca7e0baffa196c9c110 build: number: 0 rpaths: diff --git a/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml b/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml index 97c94935fcadd..bcdc6004f42a4 100644 --- a/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml +++ b/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 65aa706a567f7e328dbba0095f995cf1 build: - number: 3 + number: 4 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-phastcons100way.ucsc.hg38/meta.yaml b/recipes/bioconductor-phastcons100way.ucsc.hg38/meta.yaml index 29d5534ddc348..18974ec21f5bb 100644 --- a/recipes/bioconductor-phastcons100way.ucsc.hg38/meta.yaml +++ b/recipes/bioconductor-phastcons100way.ucsc.hg38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 878c757f9270b3410d11e4e4a4213c8e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-phastcons7way.ucsc.hg38/meta.yaml b/recipes/bioconductor-phastcons7way.ucsc.hg38/meta.yaml index 63d1bd8faa1f9..c2b940e917e3e 100644 --- a/recipes/bioconductor-phastcons7way.ucsc.hg38/meta.yaml +++ b/recipes/bioconductor-phastcons7way.ucsc.hg38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c2d87446b022c166c1c325ea2aef521d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-phemd/meta.yaml b/recipes/bioconductor-phemd/meta.yaml index 91ad87e4cb336..06c18a6472c6a 100644 --- a/recipes/bioconductor-phemd/meta.yaml +++ b/recipes/bioconductor-phemd/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "phemd" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 47b7e165094e371907496edda51706b8 + md5: 4792170112226f102cb2914b77161e88 build: number: 0 rpaths: diff --git a/recipes/bioconductor-phenopath/meta.yaml b/recipes/bioconductor-phenopath/meta.yaml index 14127153380a4..92daa7caa25e1 100644 --- a/recipes/bioconductor-phenopath/meta.yaml +++ b/recipes/bioconductor-phenopath/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 85a6e099b86c2fa0a42f319fbc937ae8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-phenotest/meta.yaml b/recipes/bioconductor-phenotest/meta.yaml index 4cb58568c45eb..6a7f422474d34 100644 --- a/recipes/bioconductor-phenotest/meta.yaml +++ b/recipes/bioconductor-phenotest/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 61f3a068e4988e693f6f2858030b0d02 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-phenstat/meta.yaml b/recipes/bioconductor-phenstat/meta.yaml index 10cb127c4cbfb..d838aaa4da8ea 100644 --- a/recipes/bioconductor-phenstat/meta.yaml +++ b/recipes/bioconductor-phenstat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5e0b89ce0beb4ae23f694ea2a1dc4a87 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-philr/meta.yaml b/recipes/bioconductor-philr/meta.yaml index 84687060e093f..8887d580a58dd 100644 --- a/recipes/bioconductor-philr/meta.yaml +++ b/recipes/bioconductor-philr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4cfeb72bb1273b6d476807548970517e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-phosphonormalizer/meta.yaml b/recipes/bioconductor-phosphonormalizer/meta.yaml index dfd66362f2d93..94b7456066823 100644 --- a/recipes/bioconductor-phosphonormalizer/meta.yaml +++ b/recipes/bioconductor-phosphonormalizer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cb886d2ef9235727c1ceeb53324493de build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-phyloseq/meta.yaml b/recipes/bioconductor-phyloseq/meta.yaml index 62de6ea1039e1..092148d2fac0b 100644 --- a/recipes/bioconductor-phyloseq/meta.yaml +++ b/recipes/bioconductor-phyloseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e335968eb4f632162cb6a177117c8cf0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pi/meta.yaml b/recipes/bioconductor-pi/meta.yaml index c3cb78be1b2b8..eed78c48c5f32 100644 --- a/recipes/bioconductor-pi/meta.yaml +++ b/recipes/bioconductor-pi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5d4c183ea18ca8fb9483a0c78f753d79 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-piano/meta.yaml b/recipes/bioconductor-piano/meta.yaml index a9012df2d46f4..667d740937be8 100644 --- a/recipes/bioconductor-piano/meta.yaml +++ b/recipes/bioconductor-piano/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.0.0" %} +{% set version = "2.0.2" %} {% set name = "piano" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 4df05c2b7c9e67fc07a50f3abd268845 + md5: 9171d8e0585315bbf3073f33ac389832 build: number: 0 rpaths: diff --git a/recipes/bioconductor-pickgene/meta.yaml b/recipes/bioconductor-pickgene/meta.yaml index 4b36bc03d8694..b2e79bfeeb7c6 100644 --- a/recipes/bioconductor-pickgene/meta.yaml +++ b/recipes/bioconductor-pickgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3e07394aaa3cf494b93d00b7307bda59 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pics/meta.yaml b/recipes/bioconductor-pics/meta.yaml index 8d4b861f9e905..24b79c65317b6 100644 --- a/recipes/bioconductor-pics/meta.yaml +++ b/recipes/bioconductor-pics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e0ebcad166db4df73d197dc69be40893 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,7 +27,6 @@ requirements: - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - - gsl run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-genomicalignments >=1.20.0,<1.21.0' @@ -36,7 +35,6 @@ requirements: - 'bioconductor-rsamtools >=2.0.0,<2.1.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - - gsl build: - {{ compiler('c') }} - automake diff --git a/recipes/bioconductor-pig.db0/meta.yaml b/recipes/bioconductor-pig.db0/meta.yaml index 89a91bb5adeac..a0298a7f5ff86 100644 --- a/recipes/bioconductor-pig.db0/meta.yaml +++ b/recipes/bioconductor-pig.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e3109e7efd1a29387f318a62e8b6892c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pig.db0/post-link.sh b/recipes/bioconductor-pig.db0/post-link.sh index c8119b7134dd8..1afae5169f3a0 100644 --- a/recipes/bioconductor-pig.db0/post-link.sh +++ b/recipes/bioconductor-pig.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/pig.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/pig.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pig.db0/bioconductor-pig.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pig.db0/bioconductor-pig.db0_3.8.2_src_all.tar.gz" ) MD5="e3109e7efd1a29387f318a62e8b6892c" diff --git a/recipes/bioconductor-pigengene/meta.yaml b/recipes/bioconductor-pigengene/meta.yaml index 8deb171f33cc6..21c6088159717 100644 --- a/recipes/bioconductor-pigengene/meta.yaml +++ b/recipes/bioconductor-pigengene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 08665f7c9021ef0176f685b864986b92 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ping/meta.yaml b/recipes/bioconductor-ping/meta.yaml index 20376e9ab4ebf..25b6b29c62eb2 100644 --- a/recipes/bioconductor-ping/meta.yaml +++ b/recipes/bioconductor-ping/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 26cf6d98525f5454eb6aad179efb0063 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pint/meta.yaml b/recipes/bioconductor-pint/meta.yaml index a9624056736d4..82b469db245c5 100644 --- a/recipes/bioconductor-pint/meta.yaml +++ b/recipes/bioconductor-pint/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: be40bec1406b1a9a9c2d208e7277a2d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pipeframe/meta.yaml b/recipes/bioconductor-pipeframe/meta.yaml index d8b639314bb85..187dfe0530285 100644 --- a/recipes/bioconductor-pipeframe/meta.yaml +++ b/recipes/bioconductor-pipeframe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bc92296ebc9ad5fb1438ee41a753d1e3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pkgdeptools/meta.yaml b/recipes/bioconductor-pkgdeptools/meta.yaml index 2fa777099284a..67f3d3ee7b7f1 100644 --- a/recipes/bioconductor-pkgdeptools/meta.yaml +++ b/recipes/bioconductor-pkgdeptools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a94aca53e28b9b9f8f3835295c17aa12 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plasfia/meta.yaml b/recipes/bioconductor-plasfia/meta.yaml index b18172c77d02b..a0b741600bd93 100644 --- a/recipes/bioconductor-plasfia/meta.yaml +++ b/recipes/bioconductor-plasfia/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 047cd501ce813df543a0e502d20cbbc5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plasfia/post-link.sh b/recipes/bioconductor-plasfia/post-link.sh index b7cf578ed14d5..249e460a87fa7 100644 --- a/recipes/bioconductor-plasfia/post-link.sh +++ b/recipes/bioconductor-plasfia/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/plasFIA_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/plasFIA_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-plasfia/bioconductor-plasfia_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-plasfia/bioconductor-plasfia_1.12.0_src_all.tar.gz" ) MD5="047cd501ce813df543a0e502d20cbbc5" diff --git a/recipes/bioconductor-plasmodiumanophelescdf/meta.yaml b/recipes/bioconductor-plasmodiumanophelescdf/meta.yaml index 2d3b2a1d81453..3e5b65588feb9 100644 --- a/recipes/bioconductor-plasmodiumanophelescdf/meta.yaml +++ b/recipes/bioconductor-plasmodiumanophelescdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 54c5c326977d6358c40cacf34cb2aca2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plasmodiumanophelesprobe/meta.yaml b/recipes/bioconductor-plasmodiumanophelesprobe/meta.yaml index e21fba5302f75..da6b0ea03888f 100644 --- a/recipes/bioconductor-plasmodiumanophelesprobe/meta.yaml +++ b/recipes/bioconductor-plasmodiumanophelesprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 281683dab923168c2eedb7b08c528935 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-platecore/meta.yaml b/recipes/bioconductor-platecore/meta.yaml index e6cf955508c0f..9ee83933bf2ac 100644 --- a/recipes/bioconductor-platecore/meta.yaml +++ b/recipes/bioconductor-platecore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 06081e7ebf7b8136766ba03420f1a2da build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plethy/meta.yaml b/recipes/bioconductor-plethy/meta.yaml index 81dec4fecef42..6204ba0ef2eaf 100644 --- a/recipes/bioconductor-plethy/meta.yaml +++ b/recipes/bioconductor-plethy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 602fa867af93cc7b3635b972b4aa16e9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plgem/meta.yaml b/recipes/bioconductor-plgem/meta.yaml index 78fe78c3b7c48..6610f3586de78 100644 --- a/recipes/bioconductor-plgem/meta.yaml +++ b/recipes/bioconductor-plgem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 790c2aa391353fcfe65940c349b1f31e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plier/meta.yaml b/recipes/bioconductor-plier/meta.yaml index 57ead2f283252..6534f511b5ecc 100644 --- a/recipes/bioconductor-plier/meta.yaml +++ b/recipes/bioconductor-plier/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cccc4742ee3ce9dfcd187b955cd91b16 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plotgrouper/meta.yaml b/recipes/bioconductor-plotgrouper/meta.yaml index 8d5ae56dba87c..16120697a302e 100644 --- a/recipes/bioconductor-plotgrouper/meta.yaml +++ b/recipes/bioconductor-plotgrouper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a6c7449cf43ca43eea040a1288c1432d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plpe/meta.yaml b/recipes/bioconductor-plpe/meta.yaml index 1bb1ee5e7136c..ae85ef175a300 100644 --- a/recipes/bioconductor-plpe/meta.yaml +++ b/recipes/bioconductor-plpe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d2deab4a268dc342757b63a8d4645700 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plrs/meta.yaml b/recipes/bioconductor-plrs/meta.yaml index bd3094ca726db..038aa2bd35b7c 100644 --- a/recipes/bioconductor-plrs/meta.yaml +++ b/recipes/bioconductor-plrs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8b386b7ca4465d74f79d9e67002c6f2a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plw/meta.yaml b/recipes/bioconductor-plw/meta.yaml index 00385ae43e542..089e4adc9bbe1 100644 --- a/recipes/bioconductor-plw/meta.yaml +++ b/recipes/bioconductor-plw/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9817b3abce8d6597da3ce7584cb04807 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-plyranges/meta.yaml b/recipes/bioconductor-plyranges/meta.yaml index 1ba2fec15578a..62e355757cb7a 100644 --- a/recipes/bioconductor-plyranges/meta.yaml +++ b/recipes/bioconductor-plyranges/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.3" %} {% set name = "plyranges" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 99a06a134e19605640d09c4b5cfb1210 + md5: f2c47efd14e1c2e563d9542ed5d643f7 build: number: 0 rpaths: diff --git a/recipes/bioconductor-pmm/meta.yaml b/recipes/bioconductor-pmm/meta.yaml index dd4ff222532ef..2ac6d550397f8 100644 --- a/recipes/bioconductor-pmm/meta.yaml +++ b/recipes/bioconductor-pmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cfed0aed28aaae52afda91973a26487a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pocrcannotation.db/meta.yaml b/recipes/bioconductor-pocrcannotation.db/meta.yaml index aeed8b01cbeaa..5ec45fcff64c7 100644 --- a/recipes/bioconductor-pocrcannotation.db/meta.yaml +++ b/recipes/bioconductor-pocrcannotation.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: da1d4dacc5fffb9c5dfea55649974aa5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-podkat/meta.yaml b/recipes/bioconductor-podkat/meta.yaml index 448850dcb1f78..f284a32371485 100644 --- a/recipes/bioconductor-podkat/meta.yaml +++ b/recipes/bioconductor-podkat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 679979f4046c4e43e81d953f250091fb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pogos/meta.yaml b/recipes/bioconductor-pogos/meta.yaml index 1681111a7d861..24cb26df18443 100644 --- a/recipes/bioconductor-pogos/meta.yaml +++ b/recipes/bioconductor-pogos/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c5c65f17d311d12b7c8725f16ae7941d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-polyester/meta.yaml b/recipes/bioconductor-polyester/meta.yaml index 4df6a3f0e01af..1c6099b2988c1 100644 --- a/recipes/bioconductor-polyester/meta.yaml +++ b/recipes/bioconductor-polyester/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7e80f66d0d4d869281a4ad04764594b9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-polyfit/meta.yaml b/recipes/bioconductor-polyfit/meta.yaml index 398c9522b9184..897345619faa8 100644 --- a/recipes/bioconductor-polyfit/meta.yaml +++ b/recipes/bioconductor-polyfit/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 34ca445df2af6dcabf24929bd126a6d2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-polyphen.hsapiens.dbsnp131/meta.yaml b/recipes/bioconductor-polyphen.hsapiens.dbsnp131/meta.yaml index 5e8deaa2db11f..f854a44489035 100644 --- a/recipes/bioconductor-polyphen.hsapiens.dbsnp131/meta.yaml +++ b/recipes/bioconductor-polyphen.hsapiens.dbsnp131/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 763e9cd4afd97b36f7e659f5454ef61f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-poplarcdf/meta.yaml b/recipes/bioconductor-poplarcdf/meta.yaml index 4cd5a194b0541..4fde63e103d81 100644 --- a/recipes/bioconductor-poplarcdf/meta.yaml +++ b/recipes/bioconductor-poplarcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 556e7f8f6f76436552d8044ef29279cb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-poplarprobe/meta.yaml b/recipes/bioconductor-poplarprobe/meta.yaml index 2c0780be8efab..e4ba890fa2afe 100644 --- a/recipes/bioconductor-poplarprobe/meta.yaml +++ b/recipes/bioconductor-poplarprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 87a608cd86084a06973a88e9b51f799a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-porcine.db/meta.yaml b/recipes/bioconductor-porcine.db/meta.yaml index 95dd8436890a7..a26fb4222e0a1 100644 --- a/recipes/bioconductor-porcine.db/meta.yaml +++ b/recipes/bioconductor-porcine.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a90a6ad39b7fda3f30c23ab315201317 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-porcinecdf/meta.yaml b/recipes/bioconductor-porcinecdf/meta.yaml index c87d4c62e76c7..054519378ba12 100644 --- a/recipes/bioconductor-porcinecdf/meta.yaml +++ b/recipes/bioconductor-porcinecdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 32a60b93829c06a935895fab0a469228 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-porcineprobe/meta.yaml b/recipes/bioconductor-porcineprobe/meta.yaml index 1025ea15cd928..9af83c13bb255 100644 --- a/recipes/bioconductor-porcineprobe/meta.yaml +++ b/recipes/bioconductor-porcineprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5ac483b6329a012d4c9954e3dee8869e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-post/meta.yaml b/recipes/bioconductor-post/meta.yaml index a380b97a9200f..28b65e76b3c94 100644 --- a/recipes/bioconductor-post/meta.yaml +++ b/recipes/bioconductor-post/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c46f4319e91a8ac8655003ed8ff437bc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-potra/meta.yaml b/recipes/bioconductor-potra/meta.yaml index b7d968da450fb..775dc21adec3d 100644 --- a/recipes/bioconductor-potra/meta.yaml +++ b/recipes/bioconductor-potra/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 28dd409c781102ceb5ea0088be879397 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-powerexplorer/meta.yaml b/recipes/bioconductor-powerexplorer/meta.yaml index 24e00acfd45c6..230110501323c 100644 --- a/recipes/bioconductor-powerexplorer/meta.yaml +++ b/recipes/bioconductor-powerexplorer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9327ee552a02d059fa9f4efe1d0a816e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-powertcr/meta.yaml b/recipes/bioconductor-powertcr/meta.yaml index 7246a8cfb42cc..f451be0233126 100644 --- a/recipes/bioconductor-powertcr/meta.yaml +++ b/recipes/bioconductor-powertcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ad42fe5c1066c24b604c06bc70370584 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ppidata/meta.yaml b/recipes/bioconductor-ppidata/meta.yaml index 4e35481fe6c13..70e23ce300f50 100644 --- a/recipes/bioconductor-ppidata/meta.yaml +++ b/recipes/bioconductor-ppidata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 93d6dce530ee9a0d3ed886ae0e53b909 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ppidata/post-link.sh b/recipes/bioconductor-ppidata/post-link.sh index 3280ce57a3071..92d01fe0f528c 100644 --- a/recipes/bioconductor-ppidata/post-link.sh +++ b/recipes/bioconductor-ppidata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ppiData_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ppiData_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ppidata/bioconductor-ppidata_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ppidata/bioconductor-ppidata_0.22.0_src_all.tar.gz" ) MD5="93d6dce530ee9a0d3ed886ae0e53b909" diff --git a/recipes/bioconductor-ppinfer/meta.yaml b/recipes/bioconductor-ppinfer/meta.yaml index c19c2496d5e86..6534c3903dd28 100644 --- a/recipes/bioconductor-ppinfer/meta.yaml +++ b/recipes/bioconductor-ppinfer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c9394e3414d3dd3f12878b6513c77a42 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ppistats/meta.yaml b/recipes/bioconductor-ppistats/meta.yaml index 432690b7523a5..b5df091e7abff 100644 --- a/recipes/bioconductor-ppistats/meta.yaml +++ b/recipes/bioconductor-ppistats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3e33c457efd15516f13d7f8144e76709 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pqsfinder/meta.yaml b/recipes/bioconductor-pqsfinder/meta.yaml index 71ca4df501662..5999a4175369a 100644 --- a/recipes/bioconductor-pqsfinder/meta.yaml +++ b/recipes/bioconductor-pqsfinder/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.0.0" %} +{% set version = "2.0.1" %} {% set name = "pqsfinder" %} {% set bioc = "3.9" %} @@ -10,13 +10,13 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: f9f28704585bad9683e2ce87c531d902 + md5: 090bfea748e96209f00a4ae8e48c00ee build: number: 0 rpaths: - lib/R/lib/ - lib/ -# Suggests: BiocStyle, knitr, Gviz, rtracklayer, ggplot2, BSgenome.Hsapiens.UCSC.hg38, testthat, stringr +# Suggests: BiocStyle, knitr, Gviz, rtracklayer, ggplot2, BSgenome.Hsapiens.UCSC.hg38, testthat, stringr, stringi # SystemRequirements: GNU make, C++11 requirements: host: diff --git a/recipes/bioconductor-prada/meta.yaml b/recipes/bioconductor-prada/meta.yaml index 58ccd0d6eaf28..5a71246304cab 100644 --- a/recipes/bioconductor-prada/meta.yaml +++ b/recipes/bioconductor-prada/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bdb750f5fd7eee86f2189acc886dc394 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pram/meta.yaml b/recipes/bioconductor-pram/meta.yaml index cee83c397b539..39e85c7f65512 100644 --- a/recipes/bioconductor-pram/meta.yaml +++ b/recipes/bioconductor-pram/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bb7c3664804776014818ec6c3c14187b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prebs/meta.yaml b/recipes/bioconductor-prebs/meta.yaml index 52591cc93a514..1ff9ede2742c1 100644 --- a/recipes/bioconductor-prebs/meta.yaml +++ b/recipes/bioconductor-prebs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c71c6d8ff29857fbdfd7ccd9e8986313 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prebsdata/meta.yaml b/recipes/bioconductor-prebsdata/meta.yaml index bcbcd522d3029..dad7c60aad369 100644 --- a/recipes/bioconductor-prebsdata/meta.yaml +++ b/recipes/bioconductor-prebsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fd5ede83923d6157b6303b81d058678f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prebsdata/post-link.sh b/recipes/bioconductor-prebsdata/post-link.sh index f8e8e15fcbed3..42466aa59845e 100644 --- a/recipes/bioconductor-prebsdata/post-link.sh +++ b/recipes/bioconductor-prebsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/prebsdata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/prebsdata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-prebsdata/bioconductor-prebsdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-prebsdata/bioconductor-prebsdata_1.20.0_src_all.tar.gz" ) MD5="fd5ede83923d6157b6303b81d058678f" diff --git a/recipes/bioconductor-precisiontrialdrawer/meta.yaml b/recipes/bioconductor-precisiontrialdrawer/meta.yaml index 896af83a6d423..81e2b7e341f33 100644 --- a/recipes/bioconductor-precisiontrialdrawer/meta.yaml +++ b/recipes/bioconductor-precisiontrialdrawer/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "PrecisionTrialDrawer" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 322e6b3ee76359734f1e6a1f9ad1da1a + md5: e4334116cfb626bc7fe77a460255628f build: number: 0 rpaths: @@ -24,7 +24,7 @@ requirements: - 'bioconductor-biomart >=2.40.0,<2.41.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-lowmacaannotation >=1.0.0,<1.1.0' + - 'bioconductor-lowmacaannotation >=0.99.0,<0.100.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - r-brglm @@ -49,7 +49,7 @@ requirements: - 'bioconductor-biomart >=2.40.0,<2.41.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-lowmacaannotation >=1.0.0,<1.1.0' + - 'bioconductor-lowmacaannotation >=0.99.0,<0.100.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - r-brglm diff --git a/recipes/bioconductor-preda/meta.yaml b/recipes/bioconductor-preda/meta.yaml index 1dbc9f89c6829..fa63f8927e95b 100644 --- a/recipes/bioconductor-preda/meta.yaml +++ b/recipes/bioconductor-preda/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: df5582ae2251f2f67890132053c1104e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-predasampledata/meta.yaml b/recipes/bioconductor-predasampledata/meta.yaml index cad97904d2a47..71a6b68c5f35c 100644 --- a/recipes/bioconductor-predasampledata/meta.yaml +++ b/recipes/bioconductor-predasampledata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b8ad6ccaa9332b95fe1c17172c39e4d7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-predasampledata/post-link.sh b/recipes/bioconductor-predasampledata/post-link.sh index a6be6a8c612a1..5a6a1882050bc 100644 --- a/recipes/bioconductor-predasampledata/post-link.sh +++ b/recipes/bioconductor-predasampledata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PREDAsampledata_0.24.0.tar.gz" "https://bioarchive.galaxyproject.org/PREDAsampledata_0.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-predasampledata/bioconductor-predasampledata_0.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-predasampledata/bioconductor-predasampledata_0.24.0_src_all.tar.gz" ) MD5="b8ad6ccaa9332b95fe1c17172c39e4d7" diff --git a/recipes/bioconductor-predictionet/meta.yaml b/recipes/bioconductor-predictionet/meta.yaml index e104cba6ee99d..38f51d75d7399 100644 --- a/recipes/bioconductor-predictionet/meta.yaml +++ b/recipes/bioconductor-predictionet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 38a12700b0f4e71deaecacb35555b12c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-preprocesscore/meta.yaml b/recipes/bioconductor-preprocesscore/meta.yaml index f3f22e2a81d7b..df75a3ff3f23b 100644 --- a/recipes/bioconductor-preprocesscore/meta.yaml +++ b/recipes/bioconductor-preprocesscore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 898d22c5820f39234dd575ae4f46631f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-primeviewcdf/meta.yaml b/recipes/bioconductor-primeviewcdf/meta.yaml index 6e35709f9e666..14b72a0abcc4a 100644 --- a/recipes/bioconductor-primeviewcdf/meta.yaml +++ b/recipes/bioconductor-primeviewcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 71e39a59a5907e9b8a8dba58d36eee50 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-primeviewprobe/meta.yaml b/recipes/bioconductor-primeviewprobe/meta.yaml index 19f95777a7e84..aaa70d9956b21 100644 --- a/recipes/bioconductor-primeviewprobe/meta.yaml +++ b/recipes/bioconductor-primeviewprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 87cc56a8da4fb742ab1558ce1d3d26cc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-primirtss/meta.yaml b/recipes/bioconductor-primirtss/meta.yaml index 629b10cbcab12..80503245df9ff 100644 --- a/recipes/bioconductor-primirtss/meta.yaml +++ b/recipes/bioconductor-primirtss/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d01f813dec836a5a410b486e9957186f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,8 +27,8 @@ requirements: - 'bioconductor-genomicscores >=1.8.0,<1.9.0' - 'bioconductor-gviz >=1.28.0,<1.29.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-jaspar2018 >=1.2.0,<1.3.0' - - 'bioconductor-phastcons100way.ucsc.hg38 >=3.8.0,<3.9.0' + - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0' + - 'bioconductor-phastcons100way.ucsc.hg38 >=3.7.0,<3.8.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - 'bioconductor-tfbstools >=1.22.0,<1.23.0' @@ -48,8 +48,8 @@ requirements: - 'bioconductor-genomicscores >=1.8.0,<1.9.0' - 'bioconductor-gviz >=1.28.0,<1.29.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-jaspar2018 >=1.2.0,<1.3.0' - - 'bioconductor-phastcons100way.ucsc.hg38 >=3.8.0,<3.9.0' + - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0' + - 'bioconductor-phastcons100way.ucsc.hg38 >=3.7.0,<3.8.0' - 'bioconductor-rtracklayer >=1.44.0,<1.45.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - 'bioconductor-tfbstools >=1.22.0,<1.23.0' diff --git a/recipes/bioconductor-prince/meta.yaml b/recipes/bioconductor-prince/meta.yaml index a4f37f42b63b8..98ffaf9ade8a5 100644 --- a/recipes/bioconductor-prince/meta.yaml +++ b/recipes/bioconductor-prince/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 33b3a94e8da1142de863250abd031484 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prize/meta.yaml b/recipes/bioconductor-prize/meta.yaml index d14063f136d0c..00c249f7a8c1b 100644 --- a/recipes/bioconductor-prize/meta.yaml +++ b/recipes/bioconductor-prize/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e9227d878c72a4eb9b1a2757566f0755 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-probamr/meta.yaml b/recipes/bioconductor-probamr/meta.yaml index 480106fc11ef5..f18bb852d46ba 100644 --- a/recipes/bioconductor-probamr/meta.yaml +++ b/recipes/bioconductor-probamr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e6c06b72cd2b79acefe5811234f8b0d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-probatch/meta.yaml b/recipes/bioconductor-probatch/meta.yaml index 0915beb3c19aa..d653e5b988931 100644 --- a/recipes/bioconductor-probatch/meta.yaml +++ b/recipes/bioconductor-probatch/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 44e29aaeccc43d5683608c7a5acb32ea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-process/meta.yaml b/recipes/bioconductor-process/meta.yaml index eb54aefe73cd4..2a19569774256 100644 --- a/recipes/bioconductor-process/meta.yaml +++ b/recipes/bioconductor-process/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 491d0d87b6f78d90fb63e97754e31e21 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-procoil/meta.yaml b/recipes/bioconductor-procoil/meta.yaml index 1e4e10076ae40..4adc5eeb8841e 100644 --- a/recipes/bioconductor-procoil/meta.yaml +++ b/recipes/bioconductor-procoil/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 728915d86c49b2a50f60bc7b44f5fa2c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prodata/meta.yaml b/recipes/bioconductor-prodata/meta.yaml index 7529fa8345b23..865f075abcbd6 100644 --- a/recipes/bioconductor-prodata/meta.yaml +++ b/recipes/bioconductor-prodata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1f8da0ea4c4c1ec424901ab1e4246b48 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prodata/post-link.sh b/recipes/bioconductor-prodata/post-link.sh index 9e26667bf2db6..4a94fd5bd9749 100644 --- a/recipes/bioconductor-prodata/post-link.sh +++ b/recipes/bioconductor-prodata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ProData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/ProData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-prodata/bioconductor-prodata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-prodata/bioconductor-prodata_1.22.0_src_all.tar.gz" ) MD5="1f8da0ea4c4c1ec424901ab1e4246b48" diff --git a/recipes/bioconductor-profia/meta.yaml b/recipes/bioconductor-profia/meta.yaml index 8ad4b4f51ccee..bcbecce1c3f0a 100644 --- a/recipes/bioconductor-profia/meta.yaml +++ b/recipes/bioconductor-profia/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dbd75f01b57a3e7dd6116f621d4a4cfa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-profileplyr/meta.yaml b/recipes/bioconductor-profileplyr/meta.yaml index f88a04417ab12..27634bd531ffc 100644 --- a/recipes/bioconductor-profileplyr/meta.yaml +++ b/recipes/bioconductor-profileplyr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "profileplyr" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 7f625ec51b41263e161afae241575bc4 + md5: b920fc3703909b98dd0a06e3ee072fea build: number: 0 rpaths: diff --git a/recipes/bioconductor-profilescoredist/meta.yaml b/recipes/bioconductor-profilescoredist/meta.yaml index 09b5ec5dfcd20..9cd41b4f5677b 100644 --- a/recipes/bioconductor-profilescoredist/meta.yaml +++ b/recipes/bioconductor-profilescoredist/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a188b68fbaee0c0d2f85da954c5ae4e6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-progeny/meta.yaml b/recipes/bioconductor-progeny/meta.yaml index 8ba6f185f90a9..b9b1ec665ca35 100644 --- a/recipes/bioconductor-progeny/meta.yaml +++ b/recipes/bioconductor-progeny/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e0365039dc839c386095ce036ebf39d6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-projectr/meta.yaml b/recipes/bioconductor-projectr/meta.yaml index 30abe41e05de1..eddb8b1ac5fc2 100644 --- a/recipes/bioconductor-projectr/meta.yaml +++ b/recipes/bioconductor-projectr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d483de0763d074a224b9189620ad65a8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-proloc/meta.yaml b/recipes/bioconductor-proloc/meta.yaml index 6db0d37b4fdbb..1f83cfdd7c32e 100644 --- a/recipes/bioconductor-proloc/meta.yaml +++ b/recipes/bioconductor-proloc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a4215d6b672595d3471574956597ac2e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prolocdata/meta.yaml b/recipes/bioconductor-prolocdata/meta.yaml index feb38641ab4cc..6432823a0ab6f 100644 --- a/recipes/bioconductor-prolocdata/meta.yaml +++ b/recipes/bioconductor-prolocdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1234945e2ea61bb519cdfa9d1e712b63 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prolocdata/post-link.sh b/recipes/bioconductor-prolocdata/post-link.sh index a0bd5d3c2647d..cad562b58de47 100644 --- a/recipes/bioconductor-prolocdata/post-link.sh +++ b/recipes/bioconductor-prolocdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pRolocdata_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/pRolocdata_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-prolocdata/bioconductor-prolocdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-prolocdata/bioconductor-prolocdata_1.22.0_src_all.tar.gz" ) MD5="1234945e2ea61bb519cdfa9d1e712b63" diff --git a/recipes/bioconductor-prolocgui/meta.yaml b/recipes/bioconductor-prolocgui/meta.yaml index 08c86e29cf7d7..06e148e2e5132 100644 --- a/recipes/bioconductor-prolocgui/meta.yaml +++ b/recipes/bioconductor-prolocgui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b399020af3773548f3e8e4a4375058ec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-promise/meta.yaml b/recipes/bioconductor-promise/meta.yaml index 30a330ab2abb4..23b1b130b0420 100644 --- a/recipes/bioconductor-promise/meta.yaml +++ b/recipes/bioconductor-promise/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: deab13ebe8ec088e9585aa2291557a4b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-proper/meta.yaml b/recipes/bioconductor-proper/meta.yaml index 975b613486ee6..c0d37145ac9e3 100644 --- a/recipes/bioconductor-proper/meta.yaml +++ b/recipes/bioconductor-proper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f1e52dedad4eca5991a82a7f828ddc18 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-props/meta.yaml b/recipes/bioconductor-props/meta.yaml index 73eb7f0801982..a3ef9dde050b9 100644 --- a/recipes/bioconductor-props/meta.yaml +++ b/recipes/bioconductor-props/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6883deadd0520221e162f777a595af90 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prostar/meta.yaml b/recipes/bioconductor-prostar/meta.yaml index aac91a80242b5..c2fb4afee3f85 100644 --- a/recipes/bioconductor-prostar/meta.yaml +++ b/recipes/bioconductor-prostar/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.16.0" %} +{% set version = "1.16.7" %} {% set name = "Prostar" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 8b2769defdfd70762bd6ce3204625b5c + md5: d92bb6609de02955ce3e711b20b20538 build: number: 0 rpaths: @@ -33,7 +33,6 @@ requirements: - r-later - r-promises - r-r.utils - - r-rclipboard - r-rhandsontable - r-shiny - r-shinyace @@ -60,7 +59,6 @@ requirements: - r-later - r-promises - r-r.utils - - r-rclipboard - r-rhandsontable - r-shiny - r-shinyace diff --git a/recipes/bioconductor-prostatecancercamcap/meta.yaml b/recipes/bioconductor-prostatecancercamcap/meta.yaml index ffcb995de53d0..d84025ddc146d 100644 --- a/recipes/bioconductor-prostatecancercamcap/meta.yaml +++ b/recipes/bioconductor-prostatecancercamcap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2f595f639b4adeb9a7a9c7ac8326840e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prostatecancercamcap/post-link.sh b/recipes/bioconductor-prostatecancercamcap/post-link.sh index 51243700aeecb..4e3ad9666dcaf 100644 --- a/recipes/bioconductor-prostatecancercamcap/post-link.sh +++ b/recipes/bioconductor-prostatecancercamcap/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/prostateCancerCamcap_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/prostateCancerCamcap_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-prostatecancercamcap/bioconductor-prostatecancercamcap_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-prostatecancercamcap/bioconductor-prostatecancercamcap_1.12.0_src_all.tar.gz" ) MD5="2f595f639b4adeb9a7a9c7ac8326840e" diff --git a/recipes/bioconductor-prostatecancergrasso/meta.yaml b/recipes/bioconductor-prostatecancergrasso/meta.yaml index c85859dee9e8f..6f11e29aeba27 100644 --- a/recipes/bioconductor-prostatecancergrasso/meta.yaml +++ b/recipes/bioconductor-prostatecancergrasso/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6bf3e5b205d0f15bd2ffb93d87029a16 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prostatecancergrasso/post-link.sh b/recipes/bioconductor-prostatecancergrasso/post-link.sh index 2602f09c046f7..d463bfd24315a 100644 --- a/recipes/bioconductor-prostatecancergrasso/post-link.sh +++ b/recipes/bioconductor-prostatecancergrasso/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/prostateCancerGrasso_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/prostateCancerGrasso_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-prostatecancergrasso/bioconductor-prostatecancergrasso_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-prostatecancergrasso/bioconductor-prostatecancergrasso_1.12.0_src_all.tar.gz" ) MD5="6bf3e5b205d0f15bd2ffb93d87029a16" diff --git a/recipes/bioconductor-prostatecancerstockholm/meta.yaml b/recipes/bioconductor-prostatecancerstockholm/meta.yaml index 2c8cc4c8e018d..4107b63b3a40a 100644 --- a/recipes/bioconductor-prostatecancerstockholm/meta.yaml +++ b/recipes/bioconductor-prostatecancerstockholm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b800030dbb59abf7e492e57b6d063b89 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prostatecancerstockholm/post-link.sh b/recipes/bioconductor-prostatecancerstockholm/post-link.sh index efdb3965f2d9d..4030be8357697 100644 --- a/recipes/bioconductor-prostatecancerstockholm/post-link.sh +++ b/recipes/bioconductor-prostatecancerstockholm/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/prostateCancerStockholm_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/prostateCancerStockholm_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-prostatecancerstockholm/bioconductor-prostatecancerstockholm_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-prostatecancerstockholm/bioconductor-prostatecancerstockholm_1.12.0_src_all.tar.gz" ) MD5="b800030dbb59abf7e492e57b6d063b89" diff --git a/recipes/bioconductor-prostatecancertaylor/meta.yaml b/recipes/bioconductor-prostatecancertaylor/meta.yaml index e4dfa47905548..b92b0988caa58 100644 --- a/recipes/bioconductor-prostatecancertaylor/meta.yaml +++ b/recipes/bioconductor-prostatecancertaylor/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b95fe8d4d6ecd8bfbaeba23a0d53c829 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prostatecancertaylor/post-link.sh b/recipes/bioconductor-prostatecancertaylor/post-link.sh index cc52fb1afdec0..463fd3e125063 100644 --- a/recipes/bioconductor-prostatecancertaylor/post-link.sh +++ b/recipes/bioconductor-prostatecancertaylor/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/prostateCancerTaylor_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/prostateCancerTaylor_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-prostatecancertaylor/bioconductor-prostatecancertaylor_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-prostatecancertaylor/bioconductor-prostatecancertaylor_1.12.0_src_all.tar.gz" ) MD5="b95fe8d4d6ecd8bfbaeba23a0d53c829" diff --git a/recipes/bioconductor-prostatecancervarambally/meta.yaml b/recipes/bioconductor-prostatecancervarambally/meta.yaml index d648e19b21070..b3004139275cd 100644 --- a/recipes/bioconductor-prostatecancervarambally/meta.yaml +++ b/recipes/bioconductor-prostatecancervarambally/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 47ad7ca82845afe9830f4cb1ad3f27c5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-prostatecancervarambally/post-link.sh b/recipes/bioconductor-prostatecancervarambally/post-link.sh index 6e226027a9e1f..e7669b153efe1 100644 --- a/recipes/bioconductor-prostatecancervarambally/post-link.sh +++ b/recipes/bioconductor-prostatecancervarambally/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/prostateCancerVarambally_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/prostateCancerVarambally_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-prostatecancervarambally/bioconductor-prostatecancervarambally_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-prostatecancervarambally/bioconductor-prostatecancervarambally_1.12.0_src_all.tar.gz" ) MD5="47ad7ca82845afe9830f4cb1ad3f27c5" diff --git a/recipes/bioconductor-proteinprofiles/meta.yaml b/recipes/bioconductor-proteinprofiles/meta.yaml index ba1f10c9dff2b..bc2ebcdbb95cf 100644 --- a/recipes/bioconductor-proteinprofiles/meta.yaml +++ b/recipes/bioconductor-proteinprofiles/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1fa0f4040fd773e2b93b140148d2158e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-proteomicsannotationhubdata/meta.yaml b/recipes/bioconductor-proteomicsannotationhubdata/meta.yaml index ab0ee9e4ac259..cc9428e0f3e1c 100644 --- a/recipes/bioconductor-proteomicsannotationhubdata/meta.yaml +++ b/recipes/bioconductor-proteomicsannotationhubdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 64ec92b50e7965a36c7097de7a946814 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-proteomm/meta.yaml b/recipes/bioconductor-proteomm/meta.yaml index 030eb36c384f7..87632cbdd5540 100644 --- a/recipes/bioconductor-proteomm/meta.yaml +++ b/recipes/bioconductor-proteomm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 39878649f2415502a7e23ec22f732fa6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-proteoqc/meta.yaml b/recipes/bioconductor-proteoqc/meta.yaml index 9199c960912f2..8a718bfd93e1a 100644 --- a/recipes/bioconductor-proteoqc/meta.yaml +++ b/recipes/bioconductor-proteoqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d4e2ae9b7a83e7ca71e5f416a8b44d55 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-protgenerics/meta.yaml b/recipes/bioconductor-protgenerics/meta.yaml index b0d5902e2be9b..ada5f2a362cd7 100644 --- a/recipes/bioconductor-protgenerics/meta.yaml +++ b/recipes/bioconductor-protgenerics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e2315c50a88dfbfb1c3c9232bde4f6ce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-psea/meta.yaml b/recipes/bioconductor-psea/meta.yaml index 5f28b36cb5cc0..58680f099041f 100644 --- a/recipes/bioconductor-psea/meta.yaml +++ b/recipes/bioconductor-psea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c33029fffd8410028cf1e4cf81a2259d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-psichomics/meta.yaml b/recipes/bioconductor-psichomics/meta.yaml index a7c20cd537bbc..adb93f99f42c4 100644 --- a/recipes/bioconductor-psichomics/meta.yaml +++ b/recipes/bioconductor-psichomics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 87befda8f17860edd8944d4a467ca9fc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-psicquic/meta.yaml b/recipes/bioconductor-psicquic/meta.yaml index 130be0ebee2bc..d0e1f9512aeab 100644 --- a/recipes/bioconductor-psicquic/meta.yaml +++ b/recipes/bioconductor-psicquic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e3a6c1993c6cfdd38d53f1ba627b154c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-psygenet2r/meta.yaml b/recipes/bioconductor-psygenet2r/meta.yaml index fde3e83509e03..a8296cca5e175 100644 --- a/recipes/bioconductor-psygenet2r/meta.yaml +++ b/recipes/bioconductor-psygenet2r/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d2c4b6390dd4574a02d4e6ccc50ee6b5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pth2o2lipids/meta.yaml b/recipes/bioconductor-pth2o2lipids/meta.yaml index 5371184049cbc..cac21c283767b 100644 --- a/recipes/bioconductor-pth2o2lipids/meta.yaml +++ b/recipes/bioconductor-pth2o2lipids/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ed9ec8732208f082981ca3ef9c8a1367 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pth2o2lipids/post-link.sh b/recipes/bioconductor-pth2o2lipids/post-link.sh index 418c0cc111934..0609a9b7f61c5 100644 --- a/recipes/bioconductor-pth2o2lipids/post-link.sh +++ b/recipes/bioconductor-pth2o2lipids/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PtH2O2lipids_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/PtH2O2lipids_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pth2o2lipids/bioconductor-pth2o2lipids_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pth2o2lipids/bioconductor-pth2o2lipids_1.10.0_src_all.tar.gz" ) MD5="ed9ec8732208f082981ca3ef9c8a1367" diff --git a/recipes/bioconductor-puma/meta.yaml b/recipes/bioconductor-puma/meta.yaml index 5cd8f0e1cc8c5..be060c8d38b46 100644 --- a/recipes/bioconductor-puma/meta.yaml +++ b/recipes/bioconductor-puma/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3f6c478de9518b82f635da32011d1455 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pumadata/meta.yaml b/recipes/bioconductor-pumadata/meta.yaml index 5f430cd265f0c..5bc8ce5da9c56 100644 --- a/recipes/bioconductor-pumadata/meta.yaml +++ b/recipes/bioconductor-pumadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bc4a7df5441823c28dfaa3c291750d5a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pumadata/post-link.sh b/recipes/bioconductor-pumadata/post-link.sh index dcc3f4bcb343d..c0206163187b4 100644 --- a/recipes/bioconductor-pumadata/post-link.sh +++ b/recipes/bioconductor-pumadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/pumadata_2.20.0.tar.gz" "https://bioarchive.galaxyproject.org/pumadata_2.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pumadata/bioconductor-pumadata_2.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pumadata/bioconductor-pumadata_2.20.0_src_all.tar.gz" ) MD5="bc4a7df5441823c28dfaa3c291750d5a" diff --git a/recipes/bioconductor-purecn/build.sh b/recipes/bioconductor-purecn/build.sh index 46e04453d4ef7..c1d13421f5f1e 100644 --- a/recipes/bioconductor-purecn/build.sh +++ b/recipes/bioconductor-purecn/build.sh @@ -8,16 +8,4 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . - -extdata=$PREFIX/lib/R/library/PureCN/extdata -mkdir -p $PREFIX/bin - -for S in Coverage.R Dx.R FilterCallableLoci.R IntervalFile.R NormalDB.R -do - perl -pi -e 'print "#!/opt/anaconda1anaconda2anaconda3/bin/Rscript\n" if $. == 1' $extdata/$S - ln -s $extdata/$S $PREFIX/bin/PureCN_${S} -done - -perl -pi -e 'print "#!/opt/anaconda1anaconda2anaconda3/bin/Rscript\n" if $. == 1' $extdata/PureCN.R -ln -s $extdata/PureCN.R $PREFIX/bin/PureCN.R +$R CMD INSTALL --build . \ No newline at end of file diff --git a/recipes/bioconductor-purecn/meta.yaml b/recipes/bioconductor-purecn/meta.yaml index 534b4d9118f13..81c9a2476dbef 100644 --- a/recipes/bioconductor-purecn/meta.yaml +++ b/recipes/bioconductor-purecn/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.14.0" %} +{% set version = "1.14.2" %} {% set name = "PureCN" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: b24d437e23ed509a68a41e7fabe7eb51 + md5: d27bfe9ced69ce8dffbfa0219bd8b145 build: number: 0 rpaths: @@ -66,16 +66,10 @@ requirements: test: commands: - '$R -e "library(''{{ name }}'')"' - - 'command -v PureCN.R >/dev/null 2>&1 || { echo >&2 "PureCN.R is not installed. Aborting."; exit 1; }' - - 'command -v PureCN_Coverage.R >/dev/null 2>&1 || { echo >&2 "PureCN_Coverage.R is not installed. Aborting."; exit 1; }' - - 'command -v PureCN_Dx.R >/dev/null 2>&1 || { echo >&2 "PureCN_Dx.R is not installed. Aborting."; exit 1; }' - - 'command -v PureCN_FilterCallableLoci.R >/dev/null 2>&1 || { echo >&2 "PureCN_FilterCallableLoci.R is not installed. Aborting."; exit 1; }' - - 'command -v PureCN_IntervalFile.R >/dev/null 2>&1 || { echo >&2 "PureCN_IntervalFile.R is not installed. Aborting."; exit 1; }' - - 'command -v PureCN_NormalDB.R >/dev/null 2>&1 || { echo >&2 "PureCN_NormalDB.R is not installed. Aborting."; exit 1; }' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 - summary: Copy number calling and SNV classification using targeted short read sequencing + summary: 'This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.' extra: identifiers: - biotools:purecn @@ -85,3 +79,4 @@ extra: version: 1.13.1 recipe_maintainers: - roryk + diff --git a/recipes/bioconductor-pvac/meta.yaml b/recipes/bioconductor-pvac/meta.yaml index c872515e8e9e6..70695065457ff 100644 --- a/recipes/bioconductor-pvac/meta.yaml +++ b/recipes/bioconductor-pvac/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fe0195602ae0184096ea60fecc37be75 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pvca/meta.yaml b/recipes/bioconductor-pvca/meta.yaml index 33f65ec5142a5..a0f4db34e7af2 100644 --- a/recipes/bioconductor-pvca/meta.yaml +++ b/recipes/bioconductor-pvca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5977112497ca22656df168911b6fcbc1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pviz/meta.yaml b/recipes/bioconductor-pviz/meta.yaml index 4d4289bcaa23b..ec8c3252e1902 100644 --- a/recipes/bioconductor-pviz/meta.yaml +++ b/recipes/bioconductor-pviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 699bc1eefaddda38bed03d0226c36ddd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pwmenrich.dmelanogaster.background/meta.yaml b/recipes/bioconductor-pwmenrich.dmelanogaster.background/meta.yaml index 9b84e587442f0..a9ae47119a299 100644 --- a/recipes/bioconductor-pwmenrich.dmelanogaster.background/meta.yaml +++ b/recipes/bioconductor-pwmenrich.dmelanogaster.background/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ccbaca13154018cdc8ab613a92b77d67 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pwmenrich.dmelanogaster.background/post-link.sh b/recipes/bioconductor-pwmenrich.dmelanogaster.background/post-link.sh index 1f3e8b37d63fd..a8b5b8b8d1966 100644 --- a/recipes/bioconductor-pwmenrich.dmelanogaster.background/post-link.sh +++ b/recipes/bioconductor-pwmenrich.dmelanogaster.background/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PWMEnrich.Dmelanogaster.background_4.18.0.tar.gz" "https://bioarchive.galaxyproject.org/PWMEnrich.Dmelanogaster.background_4.18.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pwmenrich.dmelanogaster.background/bioconductor-pwmenrich.dmelanogaster.background_4.18.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pwmenrich.dmelanogaster.background/bioconductor-pwmenrich.dmelanogaster.background_4.18.0_src_all.tar.gz" ) MD5="ccbaca13154018cdc8ab613a92b77d67" diff --git a/recipes/bioconductor-pwmenrich.hsapiens.background/meta.yaml b/recipes/bioconductor-pwmenrich.hsapiens.background/meta.yaml index 7f73c3ada9c6c..a98a7f2393e76 100644 --- a/recipes/bioconductor-pwmenrich.hsapiens.background/meta.yaml +++ b/recipes/bioconductor-pwmenrich.hsapiens.background/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ddb7753fa5b296989688aa37ebb52a66 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pwmenrich.hsapiens.background/post-link.sh b/recipes/bioconductor-pwmenrich.hsapiens.background/post-link.sh index 6c7d2f8b9c04a..4a1233c0ce4f9 100644 --- a/recipes/bioconductor-pwmenrich.hsapiens.background/post-link.sh +++ b/recipes/bioconductor-pwmenrich.hsapiens.background/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PWMEnrich.Hsapiens.background_4.18.0.tar.gz" "https://bioarchive.galaxyproject.org/PWMEnrich.Hsapiens.background_4.18.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pwmenrich.hsapiens.background/bioconductor-pwmenrich.hsapiens.background_4.18.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pwmenrich.hsapiens.background/bioconductor-pwmenrich.hsapiens.background_4.18.0_src_all.tar.gz" ) MD5="ddb7753fa5b296989688aa37ebb52a66" diff --git a/recipes/bioconductor-pwmenrich.mmusculus.background/meta.yaml b/recipes/bioconductor-pwmenrich.mmusculus.background/meta.yaml index 0a3c34a853a0f..ae8412a870056 100644 --- a/recipes/bioconductor-pwmenrich.mmusculus.background/meta.yaml +++ b/recipes/bioconductor-pwmenrich.mmusculus.background/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d9cab0ba0958913a7cfaac48f615513a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pwmenrich.mmusculus.background/post-link.sh b/recipes/bioconductor-pwmenrich.mmusculus.background/post-link.sh index e0e2cc6696abe..8fcf74676207e 100644 --- a/recipes/bioconductor-pwmenrich.mmusculus.background/post-link.sh +++ b/recipes/bioconductor-pwmenrich.mmusculus.background/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PWMEnrich.Mmusculus.background_4.18.0.tar.gz" "https://bioarchive.galaxyproject.org/PWMEnrich.Mmusculus.background_4.18.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-pwmenrich.mmusculus.background/bioconductor-pwmenrich.mmusculus.background_4.18.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-pwmenrich.mmusculus.background/bioconductor-pwmenrich.mmusculus.background_4.18.0_src_all.tar.gz" ) MD5="d9cab0ba0958913a7cfaac48f615513a" diff --git a/recipes/bioconductor-pwmenrich/meta.yaml b/recipes/bioconductor-pwmenrich/meta.yaml index 31efb3ca04557..632f4b56fb7fc 100644 --- a/recipes/bioconductor-pwmenrich/meta.yaml +++ b/recipes/bioconductor-pwmenrich/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4cf6c371eaf391c0c888b5aec6eeb739 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-pwomics/meta.yaml b/recipes/bioconductor-pwomics/meta.yaml index fb50652836fd8..fe9228c69f20e 100644 --- a/recipes/bioconductor-pwomics/meta.yaml +++ b/recipes/bioconductor-pwomics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b37d8682715801a50d85e8e06446a7bf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qckitfastq/meta.yaml b/recipes/bioconductor-qckitfastq/meta.yaml index 2893a6e35526a..9b78ee849317c 100644 --- a/recipes/bioconductor-qckitfastq/meta.yaml +++ b/recipes/bioconductor-qckitfastq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a2bd110c0093a787ec56dc40fbc51cc3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qcmetrics/meta.yaml b/recipes/bioconductor-qcmetrics/meta.yaml index 5118aa1e9c7b5..f49c9e8bf3a1f 100644 --- a/recipes/bioconductor-qcmetrics/meta.yaml +++ b/recipes/bioconductor-qcmetrics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 58dc1a2e6afca43f5d883fdde8d1282b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qdnaseq.hg19/meta.yaml b/recipes/bioconductor-qdnaseq.hg19/meta.yaml index f92f6b46b4262..a0fd68b77af69 100644 --- a/recipes/bioconductor-qdnaseq.hg19/meta.yaml +++ b/recipes/bioconductor-qdnaseq.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 18bb6347a3912c344deca9f2646087b4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qdnaseq.hg19/post-link.sh b/recipes/bioconductor-qdnaseq.hg19/post-link.sh index c2de38fe828bb..a9d509b462087 100644 --- a/recipes/bioconductor-qdnaseq.hg19/post-link.sh +++ b/recipes/bioconductor-qdnaseq.hg19/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/QDNAseq.hg19_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/QDNAseq.hg19_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-qdnaseq.hg19/bioconductor-qdnaseq.hg19_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-qdnaseq.hg19/bioconductor-qdnaseq.hg19_1.14.0_src_all.tar.gz" ) MD5="18bb6347a3912c344deca9f2646087b4" diff --git a/recipes/bioconductor-qdnaseq.mm10/meta.yaml b/recipes/bioconductor-qdnaseq.mm10/meta.yaml index 5f083d3e5638d..2d073639fd2fe 100644 --- a/recipes/bioconductor-qdnaseq.mm10/meta.yaml +++ b/recipes/bioconductor-qdnaseq.mm10/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f2c864b3e8cba93980603dd0c5b215e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qdnaseq.mm10/post-link.sh b/recipes/bioconductor-qdnaseq.mm10/post-link.sh index 13ee0b66323c3..ce2df3d72fbf3 100644 --- a/recipes/bioconductor-qdnaseq.mm10/post-link.sh +++ b/recipes/bioconductor-qdnaseq.mm10/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/QDNAseq.mm10_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/QDNAseq.mm10_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-qdnaseq.mm10/bioconductor-qdnaseq.mm10_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-qdnaseq.mm10/bioconductor-qdnaseq.mm10_1.14.0_src_all.tar.gz" ) MD5="6f2c864b3e8cba93980603dd0c5b215e" diff --git a/recipes/bioconductor-qdnaseq/meta.yaml b/recipes/bioconductor-qdnaseq/meta.yaml index afe4fcd96cd48..415b60a527ab5 100644 --- a/recipes/bioconductor-qdnaseq/meta.yaml +++ b/recipes/bioconductor-qdnaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9a6c7d92574ef0f22d4742de20100cfa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qpcrnorm/meta.yaml b/recipes/bioconductor-qpcrnorm/meta.yaml index ce1f047247e3c..d685310ac8cd8 100644 --- a/recipes/bioconductor-qpcrnorm/meta.yaml +++ b/recipes/bioconductor-qpcrnorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 49976aed28892f2c1e3c62c86f42d9e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qpgraph/meta.yaml b/recipes/bioconductor-qpgraph/meta.yaml index d704a800fedeb..49f880b542a8c 100644 --- a/recipes/bioconductor-qpgraph/meta.yaml +++ b/recipes/bioconductor-qpgraph/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 336334ed0593d42313616e0fd7800c48 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qplexanalyzer/meta.yaml b/recipes/bioconductor-qplexanalyzer/meta.yaml index d3fe3dd82a4bf..d55468a32011e 100644 --- a/recipes/bioconductor-qplexanalyzer/meta.yaml +++ b/recipes/bioconductor-qplexanalyzer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fc7302cc24a8bd83209303b4b3951950 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qplexdata/meta.yaml b/recipes/bioconductor-qplexdata/meta.yaml index a93fda9949c17..90e7b2f0c2191 100644 --- a/recipes/bioconductor-qplexdata/meta.yaml +++ b/recipes/bioconductor-qplexdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e60329bb0a7c25957e0504beb98dd1f8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qplexdata/post-link.sh b/recipes/bioconductor-qplexdata/post-link.sh index 8f4ea0cba459c..427cbe7ebc540 100644 --- a/recipes/bioconductor-qplexdata/post-link.sh +++ b/recipes/bioconductor-qplexdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/qPLEXdata_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/qPLEXdata_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-qplexdata/bioconductor-qplexdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-qplexdata/bioconductor-qplexdata_1.2.0_src_all.tar.gz" ) MD5="e60329bb0a7c25957e0504beb98dd1f8" diff --git a/recipes/bioconductor-qrqc/meta.yaml b/recipes/bioconductor-qrqc/meta.yaml index 6a1e9df628584..8d378de59d451 100644 --- a/recipes/bioconductor-qrqc/meta.yaml +++ b/recipes/bioconductor-qrqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d1614dbf5b895a83baf034fe49f1789a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qsea/meta.yaml b/recipes/bioconductor-qsea/meta.yaml index 27897e8158276..194e107a6382c 100644 --- a/recipes/bioconductor-qsea/meta.yaml +++ b/recipes/bioconductor-qsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0fae5fe514b3c766dd6df177706887a2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qsmooth/meta.yaml b/recipes/bioconductor-qsmooth/meta.yaml index 082c71077315f..af5c5862882e3 100644 --- a/recipes/bioconductor-qsmooth/meta.yaml +++ b/recipes/bioconductor-qsmooth/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d4e7613cae77fa6e53984260041a71d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qsutils/meta.yaml b/recipes/bioconductor-qsutils/meta.yaml index 43a5f67d76e3f..be80148d7410f 100644 --- a/recipes/bioconductor-qsutils/meta.yaml +++ b/recipes/bioconductor-qsutils/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 546493a7b9a5316616aa61281e3b4d36 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qualifier/meta.yaml b/recipes/bioconductor-qualifier/meta.yaml index b4a9e8ba11d44..28d954ba5e51e 100644 --- a/recipes/bioconductor-qualifier/meta.yaml +++ b/recipes/bioconductor-qualifier/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2c6692e2c10c358cc2caa8d0947c1620 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-quantro/meta.yaml b/recipes/bioconductor-quantro/meta.yaml index 56d111d5f02be..56a1375197d06 100644 --- a/recipes/bioconductor-quantro/meta.yaml +++ b/recipes/bioconductor-quantro/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c271662d585e8997b71f103a08dacf8a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-quantsmooth/meta.yaml b/recipes/bioconductor-quantsmooth/meta.yaml index b4f0051c212ec..77fea54b6a065 100644 --- a/recipes/bioconductor-quantsmooth/meta.yaml +++ b/recipes/bioconductor-quantsmooth/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 06ba796cd1e44554ed3e62d234269d6b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-quartpac/meta.yaml b/recipes/bioconductor-quartpac/meta.yaml index 8d05078319378..14fb8fb4a9dcb 100644 --- a/recipes/bioconductor-quartpac/meta.yaml +++ b/recipes/bioconductor-quartpac/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d47f56657de973251a31d1b66909329f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-quasr/meta.yaml b/recipes/bioconductor-quasr/meta.yaml index 27dd91453e9dc..51a1d45375c7e 100644 --- a/recipes/bioconductor-quasr/meta.yaml +++ b/recipes/bioconductor-quasr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.24.0" %} +{% set version = "1.24.2" %} {% set name = "QuasR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 30473891dbb03a0f54a05490f764737b + md5: f85161c3210e2369117373dcd8e87902 build: number: 0 rpaths: diff --git a/recipes/bioconductor-quaternaryprod/meta.yaml b/recipes/bioconductor-quaternaryprod/meta.yaml index f2ab2e8c4e949..3c0b784890416 100644 --- a/recipes/bioconductor-quaternaryprod/meta.yaml +++ b/recipes/bioconductor-quaternaryprod/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1123375c16ab1573f3885096bf438f22 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qubic/meta.yaml b/recipes/bioconductor-qubic/meta.yaml index e676c62d11f5a..d01ceb2a6a30f 100644 --- a/recipes/bioconductor-qubic/meta.yaml +++ b/recipes/bioconductor-qubic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 62cc1d219fac17e3d73e77ecbfb1dc10 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qubicdata/meta.yaml b/recipes/bioconductor-qubicdata/meta.yaml index 4587679dc25ba..4aa47eb415155 100644 --- a/recipes/bioconductor-qubicdata/meta.yaml +++ b/recipes/bioconductor-qubicdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: db90386771c4b586cb2e466881e897d6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qubicdata/post-link.sh b/recipes/bioconductor-qubicdata/post-link.sh index 9ee5958f967de..e167641a56fd6 100644 --- a/recipes/bioconductor-qubicdata/post-link.sh +++ b/recipes/bioconductor-qubicdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/QUBICdata_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/QUBICdata_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-qubicdata/bioconductor-qubicdata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-qubicdata/bioconductor-qubicdata_1.12.0_src_all.tar.gz" ) MD5="db90386771c4b586cb2e466881e897d6" diff --git a/recipes/bioconductor-qusage/meta.yaml b/recipes/bioconductor-qusage/meta.yaml index accde0a5d7ceb..329ff4913adcf 100644 --- a/recipes/bioconductor-qusage/meta.yaml +++ b/recipes/bioconductor-qusage/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6ce81ce507c1b76c40a33058159813ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-qvalue/meta.yaml b/recipes/bioconductor-qvalue/meta.yaml index 6a5c40df0fe50..e2ea942002bb5 100644 --- a/recipes/bioconductor-qvalue/meta.yaml +++ b/recipes/bioconductor-qvalue/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2606ad06ad8b41c16fa5b6cc7a9f14ba build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-r10kcod.db/meta.yaml b/recipes/bioconductor-r10kcod.db/meta.yaml index 077ecdf8c766f..18e858f261708 100644 --- a/recipes/bioconductor-r10kcod.db/meta.yaml +++ b/recipes/bioconductor-r10kcod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4a7a25fee64294cfb5adccaa6cf28772 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-r3cpet/meta.yaml b/recipes/bioconductor-r3cpet/meta.yaml index 2c87a1f2e69b6..0082c2b82b473 100644 --- a/recipes/bioconductor-r3cpet/meta.yaml +++ b/recipes/bioconductor-r3cpet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5d62ab7bf2c8e55bc2ed601855ce4d86 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-r3cseq/meta.yaml b/recipes/bioconductor-r3cseq/meta.yaml index 2b895cc9a595d..1dffc966c5e1c 100644 --- a/recipes/bioconductor-r3cseq/meta.yaml +++ b/recipes/bioconductor-r3cseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b39e873a2ae7044574684b964168f7e0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-r453plus1toolbox/meta.yaml b/recipes/bioconductor-r453plus1toolbox/meta.yaml index c65ef1f54f2c7..32701689ce617 100644 --- a/recipes/bioconductor-r453plus1toolbox/meta.yaml +++ b/recipes/bioconductor-r453plus1toolbox/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c13e0ea174443f8c59551b6797f15977 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-r4rna/meta.yaml b/recipes/bioconductor-r4rna/meta.yaml index 214f5b30cc68d..ed514673b92ec 100644 --- a/recipes/bioconductor-r4rna/meta.yaml +++ b/recipes/bioconductor-r4rna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4ce7f63eb631f73c6cb99ce4ef43c5e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rae230a.db/meta.yaml b/recipes/bioconductor-rae230a.db/meta.yaml index d5b65cb313086..74241c2b12a06 100644 --- a/recipes/bioconductor-rae230a.db/meta.yaml +++ b/recipes/bioconductor-rae230a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fb9d6a02ce85cc521c0477a1a6f861f6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rae230acdf/meta.yaml b/recipes/bioconductor-rae230acdf/meta.yaml index 652499ea84032..816541effc9de 100644 --- a/recipes/bioconductor-rae230acdf/meta.yaml +++ b/recipes/bioconductor-rae230acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6f2281124e1be164d5fd599e84f6adbc build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rae230aprobe/meta.yaml b/recipes/bioconductor-rae230aprobe/meta.yaml index 949128c2a0770..dc6c72807d03d 100644 --- a/recipes/bioconductor-rae230aprobe/meta.yaml +++ b/recipes/bioconductor-rae230aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6f2d77e1d9c1e3afb96ef78b3202bb0b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rae230b.db/meta.yaml b/recipes/bioconductor-rae230b.db/meta.yaml index 56c6deb285976..b03e43c388e37 100644 --- a/recipes/bioconductor-rae230b.db/meta.yaml +++ b/recipes/bioconductor-rae230b.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 23fb8fd2cf3f178020db9b7f5692a28d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rae230bcdf/meta.yaml b/recipes/bioconductor-rae230bcdf/meta.yaml index a27ec7ed8e775..95e0d858edef0 100644 --- a/recipes/bioconductor-rae230bcdf/meta.yaml +++ b/recipes/bioconductor-rae230bcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bd61c17402e9c04be1000c16e0356618 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rae230bprobe/meta.yaml b/recipes/bioconductor-rae230bprobe/meta.yaml index aa0350361002f..0ad9325d992e1 100644 --- a/recipes/bioconductor-rae230bprobe/meta.yaml +++ b/recipes/bioconductor-rae230bprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7bdb3a07e1f00de8ff510a69bdac4c53 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-raex10stprobeset.db/meta.yaml b/recipes/bioconductor-raex10stprobeset.db/meta.yaml index 97ea9c107dcf4..5121edc509458 100644 --- a/recipes/bioconductor-raex10stprobeset.db/meta.yaml +++ b/recipes/bioconductor-raex10stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9cdc6abb3cf39eb7363fe74a0963c5b7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-raex10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-raex10sttranscriptcluster.db/meta.yaml index 2ffc6d2464ed1..5992126b079f6 100644 --- a/recipes/bioconductor-raex10sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-raex10sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3eb2d97bfffb595e6b23550f4a27a8c3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-raexexonprobesetlocation/meta.yaml b/recipes/bioconductor-raexexonprobesetlocation/meta.yaml index e8cf3ad8fa0bb..83131345fb829 100644 --- a/recipes/bioconductor-raexexonprobesetlocation/meta.yaml +++ b/recipes/bioconductor-raexexonprobesetlocation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d547bcd30685495283b32f0f86ecc79b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene10stprobeset.db/meta.yaml b/recipes/bioconductor-ragene10stprobeset.db/meta.yaml index 4ad75d9d5774d..6812e0fe95cbf 100644 --- a/recipes/bioconductor-ragene10stprobeset.db/meta.yaml +++ b/recipes/bioconductor-ragene10stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7338948d43b2200ca255aeb87cf99f3e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-ragene10sttranscriptcluster.db/meta.yaml index a59a71fa66025..92976e045bfe5 100644 --- a/recipes/bioconductor-ragene10sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-ragene10sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2523540bab5f12e6e5c1e140c1663832 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene10stv1cdf/meta.yaml b/recipes/bioconductor-ragene10stv1cdf/meta.yaml index e42e4b9a6ce90..67ce542f76a22 100644 --- a/recipes/bioconductor-ragene10stv1cdf/meta.yaml +++ b/recipes/bioconductor-ragene10stv1cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: df696e9dbf5b3f2761b6a0a5914be058 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene10stv1probe/meta.yaml b/recipes/bioconductor-ragene10stv1probe/meta.yaml index 092fca9e8fc66..02664f050c8c4 100644 --- a/recipes/bioconductor-ragene10stv1probe/meta.yaml +++ b/recipes/bioconductor-ragene10stv1probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 94978b6efb075aacf31ccdc8000e40fa build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene11stprobeset.db/meta.yaml b/recipes/bioconductor-ragene11stprobeset.db/meta.yaml index e76d7aff28b7c..b0232debc8ec4 100644 --- a/recipes/bioconductor-ragene11stprobeset.db/meta.yaml +++ b/recipes/bioconductor-ragene11stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5ce8dfb793afc7307106f3d4872dfeb1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene11sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-ragene11sttranscriptcluster.db/meta.yaml index ca16e756087f4..e4e548e15d0f3 100644 --- a/recipes/bioconductor-ragene11sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-ragene11sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 81a645c32105ffb4bfb45eb8bcf13855 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene20stprobeset.db/meta.yaml b/recipes/bioconductor-ragene20stprobeset.db/meta.yaml index 430ccddc5a2be..f5f25ac781acf 100644 --- a/recipes/bioconductor-ragene20stprobeset.db/meta.yaml +++ b/recipes/bioconductor-ragene20stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dd4e8701fd716e8564da2581d52ce1db build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene20sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-ragene20sttranscriptcluster.db/meta.yaml index 680f206700923..6a6e2adafc2c2 100644 --- a/recipes/bioconductor-ragene20sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-ragene20sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 79693b35c3837f9e5fe7337ac3e86e1f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene21stprobeset.db/meta.yaml b/recipes/bioconductor-ragene21stprobeset.db/meta.yaml index 7f62267877fbd..8fa919a6d3cb4 100644 --- a/recipes/bioconductor-ragene21stprobeset.db/meta.yaml +++ b/recipes/bioconductor-ragene21stprobeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9a2e1eb46277622a673eb3e11ca14aee build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ragene21sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-ragene21sttranscriptcluster.db/meta.yaml index c357d5f88d13b..13905c27859b8 100644 --- a/recipes/bioconductor-ragene21sttranscriptcluster.db/meta.yaml +++ b/recipes/bioconductor-ragene21sttranscriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 45a0cfb35fc78ec28705024a8d091163 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-raggedexperiment/meta.yaml b/recipes/bioconductor-raggedexperiment/meta.yaml index 802869057f7d0..a73116950a315 100644 --- a/recipes/bioconductor-raggedexperiment/meta.yaml +++ b/recipes/bioconductor-raggedexperiment/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3fdea8716d8fde43aa363a97dafcd91f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rain/meta.yaml b/recipes/bioconductor-rain/meta.yaml index 0ad5177d33bc7..4cf7f45b25400 100644 --- a/recipes/bioconductor-rain/meta.yaml +++ b/recipes/bioconductor-rain/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 65a71f22d50df3704c7d697a2e78dbfd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rama/meta.yaml b/recipes/bioconductor-rama/meta.yaml index 391d82a674c0e..7a2bad5fbc086 100644 --- a/recipes/bioconductor-rama/meta.yaml +++ b/recipes/bioconductor-rama/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 09183bff22ae8499d8f99175f334c193 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ramwas/meta.yaml b/recipes/bioconductor-ramwas/meta.yaml index 87a8b1593e9c1..103037a392a35 100644 --- a/recipes/bioconductor-ramwas/meta.yaml +++ b/recipes/bioconductor-ramwas/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1e3f7ddaa2171b7a1889ddb830d12712 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-randomwalkrestartmh/meta.yaml b/recipes/bioconductor-randomwalkrestartmh/meta.yaml index 776fbc3bd1e58..76da9eee4b2e8 100644 --- a/recipes/bioconductor-randomwalkrestartmh/meta.yaml +++ b/recipes/bioconductor-randomwalkrestartmh/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 969cdbf1c3cac6c81e8c7a0d47e8ba13 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-randpack/meta.yaml b/recipes/bioconductor-randpack/meta.yaml index 5849c957f551c..c7513eeb71379 100644 --- a/recipes/bioconductor-randpack/meta.yaml +++ b/recipes/bioconductor-randpack/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 063a95e021d78fe49fc130d47493c892 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rankprod/meta.yaml b/recipes/bioconductor-rankprod/meta.yaml index fc1a58da96fa5..ce246aac876c9 100644 --- a/recipes/bioconductor-rankprod/meta.yaml +++ b/recipes/bioconductor-rankprod/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2df702820b143840f7a35de342f2aa92 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rarevariantvis/meta.yaml b/recipes/bioconductor-rarevariantvis/meta.yaml index 2263c05fca442..c598290369e1a 100644 --- a/recipes/bioconductor-rarevariantvis/meta.yaml +++ b/recipes/bioconductor-rarevariantvis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 264c45546060173959e66bdce31ad53f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -28,7 +28,7 @@ requirements: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-genomicscores >=1.8.0,<1.9.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-phastcons100way.ucsc.hg19 >=3.8.0,<3.9.0' + - 'bioconductor-phastcons100way.ucsc.hg19 >=3.7.0,<3.8.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0' @@ -45,7 +45,7 @@ requirements: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-genomicscores >=1.8.0,<1.9.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - - 'bioconductor-phastcons100way.ucsc.hg19 >=3.8.0,<3.9.0' + - 'bioconductor-phastcons100way.ucsc.hg19 >=3.7.0,<3.8.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0' diff --git a/recipes/bioconductor-rariant/meta.yaml b/recipes/bioconductor-rariant/meta.yaml index b2aad87c29bab..942bca8ead90f 100644 --- a/recipes/bioconductor-rariant/meta.yaml +++ b/recipes/bioconductor-rariant/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 35bff83f4c34da31a2cbea4dfcfe2894 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rat.db0/meta.yaml b/recipes/bioconductor-rat.db0/meta.yaml index e2c29ce3c2a3b..2ca158267dd27 100644 --- a/recipes/bioconductor-rat.db0/meta.yaml +++ b/recipes/bioconductor-rat.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8095a030c23fddc14b56466dbf7d2b82 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rat.db0/post-link.sh b/recipes/bioconductor-rat.db0/post-link.sh index e80fb0da6b38b..80173f2529854 100644 --- a/recipes/bioconductor-rat.db0/post-link.sh +++ b/recipes/bioconductor-rat.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/rat.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/rat.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rat.db0/bioconductor-rat.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rat.db0/bioconductor-rat.db0_3.8.2_src_all.tar.gz" ) MD5="8095a030c23fddc14b56466dbf7d2b82" diff --git a/recipes/bioconductor-rat2302.db/meta.yaml b/recipes/bioconductor-rat2302.db/meta.yaml index 0a86249e8c843..e8d4fe8bc729a 100644 --- a/recipes/bioconductor-rat2302.db/meta.yaml +++ b/recipes/bioconductor-rat2302.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bcd325ab88de497001867a7cae4501cc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rat2302cdf/meta.yaml b/recipes/bioconductor-rat2302cdf/meta.yaml index 76296d6adff6b..96ff6d0076cae 100644 --- a/recipes/bioconductor-rat2302cdf/meta.yaml +++ b/recipes/bioconductor-rat2302cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a033730f79a11d45b4cd7e7c520f8052 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rat2302frmavecs/meta.yaml b/recipes/bioconductor-rat2302frmavecs/meta.yaml index ea53795a1e9ad..4669eb2c6a81e 100644 --- a/recipes/bioconductor-rat2302frmavecs/meta.yaml +++ b/recipes/bioconductor-rat2302frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 44d9f00c2f3806899c6605d1ba274066 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rat2302frmavecs/post-link.sh b/recipes/bioconductor-rat2302frmavecs/post-link.sh index 4d7faeb27a133..45e8e57729336 100644 --- a/recipes/bioconductor-rat2302frmavecs/post-link.sh +++ b/recipes/bioconductor-rat2302frmavecs/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/rat2302frmavecs_0.99.11.tar.gz" "https://bioarchive.galaxyproject.org/rat2302frmavecs_0.99.11.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rat2302frmavecs/bioconductor-rat2302frmavecs_0.99.11_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rat2302frmavecs/bioconductor-rat2302frmavecs_0.99.11_src_all.tar.gz" ) MD5="44d9f00c2f3806899c6605d1ba274066" diff --git a/recipes/bioconductor-rat2302probe/meta.yaml b/recipes/bioconductor-rat2302probe/meta.yaml index 5e2b9e164391b..ddc861fcd5a0d 100644 --- a/recipes/bioconductor-rat2302probe/meta.yaml +++ b/recipes/bioconductor-rat2302probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d1d9215e52b9e845cc4d7c902536e0d6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ratchrloc/meta.yaml b/recipes/bioconductor-ratchrloc/meta.yaml index 775f175c682f6..f25d6b9d13260 100644 --- a/recipes/bioconductor-ratchrloc/meta.yaml +++ b/recipes/bioconductor-ratchrloc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6fecff4821a5a47e3bd38a2ff78173d5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rattoxfxcdf/meta.yaml b/recipes/bioconductor-rattoxfxcdf/meta.yaml index 850eff019c75c..cc1f21e113b1f 100644 --- a/recipes/bioconductor-rattoxfxcdf/meta.yaml +++ b/recipes/bioconductor-rattoxfxcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 912d0fa424615fcd92773ed174d5efdd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rattoxfxprobe/meta.yaml b/recipes/bioconductor-rattoxfxprobe/meta.yaml index 374649be026a2..913f50ee53d90 100644 --- a/recipes/bioconductor-rattoxfxprobe/meta.yaml +++ b/recipes/bioconductor-rattoxfxprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 202791c72e8c956b9854fa4d9ba67a24 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rattus.norvegicus/meta.yaml b/recipes/bioconductor-rattus.norvegicus/meta.yaml index 040ba9e13c935..68b2e16a0da8b 100644 --- a/recipes/bioconductor-rattus.norvegicus/meta.yaml +++ b/recipes/bioconductor-rattus.norvegicus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5692fdeb0bc7f94e1db35f097cad99a9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbcbook1/meta.yaml b/recipes/bioconductor-rbcbook1/meta.yaml index fd6ed62432eb3..9c29b90ce1074 100644 --- a/recipes/bioconductor-rbcbook1/meta.yaml +++ b/recipes/bioconductor-rbcbook1/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d27a11f7a88414446ebca92f66665b5b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbgl/meta.yaml b/recipes/bioconductor-rbgl/meta.yaml index 4736bf352371b..e4762dadf2509 100644 --- a/recipes/bioconductor-rbgl/meta.yaml +++ b/recipes/bioconductor-rbgl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 300bba134b21fa85d6b24efa5a0ec21c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbioinf/meta.yaml b/recipes/bioconductor-rbioinf/meta.yaml index 82b8ab13dfa43..fe564da131151 100644 --- a/recipes/bioconductor-rbioinf/meta.yaml +++ b/recipes/bioconductor-rbioinf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c157e29f804f8b12ec5771f2283f1850 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbiopaxparser/meta.yaml b/recipes/bioconductor-rbiopaxparser/meta.yaml index 9624f088446f1..735ea1c0d084e 100644 --- a/recipes/bioconductor-rbiopaxparser/meta.yaml +++ b/recipes/bioconductor-rbiopaxparser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b8e64e8bcf94e7674e7b5bcda29cd06c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbm/meta.yaml b/recipes/bioconductor-rbm/meta.yaml index a2dfd8cd5cba6..827b019a18f8a 100644 --- a/recipes/bioconductor-rbm/meta.yaml +++ b/recipes/bioconductor-rbm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ef9b3a8bb641fc13f7d536400f49dd64 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbowtie/meta.yaml b/recipes/bioconductor-rbowtie/meta.yaml index 34b7099d52c35..953a109e9d79e 100644 --- a/recipes/bioconductor-rbowtie/meta.yaml +++ b/recipes/bioconductor-rbowtie/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6b2e05e40fda2c1f4d5671167fca5bf5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbowtie2/build.sh b/recipes/bioconductor-rbowtie2/build.sh index 9777315fe97ad..e189fe0b69e5e 100644 --- a/recipes/bioconductor-rbowtie2/build.sh +++ b/recipes/bioconductor-rbowtie2/build.sh @@ -4,8 +4,6 @@ grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION mkdir -p ~/.R echo -e "CC=$CC FC=$FC -CFLAGS=$CFLAGS -CXXFLAGS=$CXXFLAGS CXX=$CXX -I${PREFIX}/include -L${PREFIX}/lib CXX98=$CXX CXX11=$CXX diff --git a/recipes/bioconductor-rbowtie2/meta.yaml b/recipes/bioconductor-rbowtie2/meta.yaml index 685df134d67ea..27b8a20ffa3c9 100644 --- a/recipes/bioconductor-rbowtie2/meta.yaml +++ b/recipes/bioconductor-rbowtie2/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f77a146308dcd3517165fec88262caa7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbsurv/meta.yaml b/recipes/bioconductor-rbsurv/meta.yaml index e862aa15662cd..13a43b297271d 100644 --- a/recipes/bioconductor-rbsurv/meta.yaml +++ b/recipes/bioconductor-rbsurv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9e7d74ec22e1d4b835daa9eaea04f65c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rcade/build.sh b/recipes/bioconductor-rcade/build.sh index c1d13421f5f1e..4b4a73a150a8f 100644 --- a/recipes/bioconductor-rcade/build.sh +++ b/recipes/bioconductor-rcade/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-rcade/meta.yaml b/recipes/bioconductor-rcade/meta.yaml index 251519da6b35a..9cae8b2363d4d 100644 --- a/recipes/bioconductor-rcade/meta.yaml +++ b/recipes/bioconductor-rcade/meta.yaml @@ -12,13 +12,20 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fdd9ad4b78ffed906437541c24fd7d86 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic # Suggests: limma, biomaRt, RUnit, BiocGenerics, BiocStyle requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-bayseq >=2.18.0,<2.19.0' - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' @@ -43,7 +50,7 @@ requirements: - r-rgl test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-2 diff --git a/recipes/bioconductor-rcas/meta.yaml b/recipes/bioconductor-rcas/meta.yaml index 959dc48d8a793..0db56cdb5d0c9 100644 --- a/recipes/bioconductor-rcas/meta.yaml +++ b/recipes/bioconductor-rcas/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.10.0" %} +{% set version = "1.10.1" %} {% set name = "RCAS" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: b8fa7781aeab949d1e011fc71c1aa2c9 + md5: 77dcdca0256d0efb9a29c3f26e14f21e build: number: 0 rpaths: @@ -50,7 +50,6 @@ requirements: - r-proxy - 'r-rmarkdown >=0.9.5' - r-rsqlite - - pandoc run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' @@ -81,7 +80,6 @@ requirements: - r-proxy - 'r-rmarkdown >=0.9.5' - r-rsqlite - - pandoc test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-rcaspar/meta.yaml b/recipes/bioconductor-rcaspar/meta.yaml index 74926e65eeebe..3e94820c2fd68 100644 --- a/recipes/bioconductor-rcaspar/meta.yaml +++ b/recipes/bioconductor-rcaspar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 306067d091c8eb65e9a09bcef1a65b19 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rcellminer/meta.yaml b/recipes/bioconductor-rcellminer/meta.yaml index 63628cb66e6b8..1e94665bc46af 100644 --- a/recipes/bioconductor-rcellminer/meta.yaml +++ b/recipes/bioconductor-rcellminer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fabbb8cb40bd48d4722e3a31cdec57f5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rcellminerdata/meta.yaml b/recipes/bioconductor-rcellminerdata/meta.yaml index 07671f4d723fe..e92bd3818da36 100644 --- a/recipes/bioconductor-rcellminerdata/meta.yaml +++ b/recipes/bioconductor-rcellminerdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d45f5a4a645566548f7b472e787b710a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rcellminerdata/post-link.sh b/recipes/bioconductor-rcellminerdata/post-link.sh index ee5b1414134b9..517aab2d2c1a1 100644 --- a/recipes/bioconductor-rcellminerdata/post-link.sh +++ b/recipes/bioconductor-rcellminerdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/rcellminerData_2.6.0.tar.gz" "https://bioarchive.galaxyproject.org/rcellminerData_2.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rcellminerdata/bioconductor-rcellminerdata_2.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rcellminerdata/bioconductor-rcellminerdata_2.6.0_src_all.tar.gz" ) MD5="d45f5a4a645566548f7b472e787b710a" diff --git a/recipes/bioconductor-rcgh/meta.yaml b/recipes/bioconductor-rcgh/meta.yaml index 04e605bc7c0e1..694c2639176fa 100644 --- a/recipes/bioconductor-rcgh/meta.yaml +++ b/recipes/bioconductor-rcgh/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 522541f1b2847440b4f8b4507db575be build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rchemcpp/meta.yaml b/recipes/bioconductor-rchemcpp/meta.yaml index 41defd95e206e..1b3fd09fe8e43 100644 --- a/recipes/bioconductor-rchemcpp/meta.yaml +++ b/recipes/bioconductor-rchemcpp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7baa3710ac856f7b70b580e127f0aa0e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rchyoptimyx/build.sh b/recipes/bioconductor-rchyoptimyx/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-rchyoptimyx/build.sh +++ b/recipes/bioconductor-rchyoptimyx/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-rchyoptimyx/meta.yaml b/recipes/bioconductor-rchyoptimyx/meta.yaml index 059b2392e235e..5d4d67bff4501 100644 --- a/recipes/bioconductor-rchyoptimyx/meta.yaml +++ b/recipes/bioconductor-rchyoptimyx/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 31073dc97f960a5b01c81c383bbe40e6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -34,9 +34,15 @@ requirements: - {{ compiler('c') }} - {{ compiler('cxx') }} - make + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 @@ -44,4 +50,3 @@ about: extra: container: extended-base: true - diff --git a/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml b/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml index 744375cea7b8b..befd83aeb4dbc 100644 --- a/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml +++ b/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2558d0f1567d5e36b21cc109a030d844 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/post-link.sh b/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/post-link.sh index 7660418e88a2c..4fd4b4cafb2d7 100644 --- a/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/post-link.sh +++ b/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp_1.4.0_src_all.tar.gz" ) MD5="2558d0f1567d5e36b21cc109a030d844" diff --git a/recipes/bioconductor-rcistarget/meta.yaml b/recipes/bioconductor-rcistarget/meta.yaml index 2c091baf70e7f..23dff6d1aeb5d 100644 --- a/recipes/bioconductor-rcistarget/meta.yaml +++ b/recipes/bioconductor-rcistarget/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: adc62e71ca1030c785f3c0e80a1a60c7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rcm/meta.yaml b/recipes/bioconductor-rcm/meta.yaml index c34abb4e129a2..73a6375008e39 100644 --- a/recipes/bioconductor-rcm/meta.yaml +++ b/recipes/bioconductor-rcm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8d34d630c361a2426ae5054ba7e536b1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rcpi/meta.yaml b/recipes/bioconductor-rcpi/meta.yaml index 46eb1142dd60b..0edd63c65ef0c 100644 --- a/recipes/bioconductor-rcpi/meta.yaml +++ b/recipes/bioconductor-rcpi/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.20.0" %} +{% set version = "1.20.1" %} {% set name = "Rcpi" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 299a4ae1a053e56c720beb9a1a8055e9 + md5: b2b1cdba649c3638f98dd463e23366bb build: number: 0 rpaths: diff --git a/recipes/bioconductor-rcwl/meta.yaml b/recipes/bioconductor-rcwl/meta.yaml index 5d758fce63ee9..99f8040165eb2 100644 --- a/recipes/bioconductor-rcwl/meta.yaml +++ b/recipes/bioconductor-rcwl/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.9" %} {% set name = "Rcwl" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: b028c8787f65de48c28ff1f31a46269b + md5: 8b2b7e4042af2fcdd09d434870b3c930 build: number: 0 rpaths: @@ -25,17 +25,19 @@ requirements: - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - r-batchtools + - r-codetools - r-diagrammer + - r-r.utils - r-shiny - r-yaml - - python - - cwltool >=1.0.2018 run: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - r-base - r-batchtools + - r-codetools - r-diagrammer + - r-r.utils - r-shiny - r-yaml - python diff --git a/recipes/bioconductor-rcwlpipelines/meta.yaml b/recipes/bioconductor-rcwlpipelines/meta.yaml index 8290d18af09d1..15736161162ba 100644 --- a/recipes/bioconductor-rcwlpipelines/meta.yaml +++ b/recipes/bioconductor-rcwlpipelines/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.4" %} {% set name = "RcwlPipelines" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 207f3342aa004b2b69ba8b1d45733dd9 + md5: 291714413108cc17ecbe020f6c135587 build: number: 0 rpaths: @@ -26,14 +26,12 @@ requirements: - r-base - r-dplyr - r-rappdirs - - nodejs run: - 'bioconductor-biocfilecache >=1.8.0,<1.9.0' - 'bioconductor-rcwl >=1.0.0,<1.1.0' - r-base - r-dplyr - r-rappdirs - - nodejs test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-rcy3/meta.yaml b/recipes/bioconductor-rcy3/meta.yaml index c6b704646d995..561c50cf9e648 100644 --- a/recipes/bioconductor-rcy3/meta.yaml +++ b/recipes/bioconductor-rcy3/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.4.0" %} +{% set version = "2.4.3" %} {% set name = "RCy3" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: a1ac06fc9eaf9ec62b8485c5ab5c3b1b + md5: 21fb6810e7fd5df58382992d1813aeeb build: number: 0 rpaths: @@ -29,8 +29,6 @@ requirements: - r-r.utils - r-rjsonio - r-xml - - cytoscape >=3.7.1 - - cyrest >=3.8.0 run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-graph >=1.62.0,<1.63.0' @@ -40,8 +38,6 @@ requirements: - r-r.utils - r-rjsonio - r-xml - - cytoscape >=3.7.1 - - cyrest >=3.8.0 test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-rcyjs/meta.yaml b/recipes/bioconductor-rcyjs/meta.yaml index 5c813790e92c9..81b712ad02f8f 100644 --- a/recipes/bioconductor-rcyjs/meta.yaml +++ b/recipes/bioconductor-rcyjs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b08a087c3857b27c5a97c92de29a2b98 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rdavidwebservice/meta.yaml b/recipes/bioconductor-rdavidwebservice/meta.yaml index 20f6748a39787..6830183e4d73c 100644 --- a/recipes/bioconductor-rdavidwebservice/meta.yaml +++ b/recipes/bioconductor-rdavidwebservice/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3b8b125d8f39ee1f0b017168127a8661 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rdgidb/meta.yaml b/recipes/bioconductor-rdgidb/meta.yaml index 1cf839df198e0..2570a2df814cb 100644 --- a/recipes/bioconductor-rdgidb/meta.yaml +++ b/recipes/bioconductor-rdgidb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e8ea9465dfeff48d4475c8375f2bc2c4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rdisop/meta.yaml b/recipes/bioconductor-rdisop/meta.yaml index 8a978dbd0d593..0f041d83ad183 100644 --- a/recipes/bioconductor-rdisop/meta.yaml +++ b/recipes/bioconductor-rdisop/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 13e4b81c9b0e526c06e97789f32f9a40 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rdrtoolbox/build.sh b/recipes/bioconductor-rdrtoolbox/build.sh index 068014183bd4e..d87a754453352 100644 --- a/recipes/bioconductor-rdrtoolbox/build.sh +++ b/recipes/bioconductor-rdrtoolbox/build.sh @@ -1,5 +1,4 @@ #!/bin/bash -export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 mv DESCRIPTION DESCRIPTION.old grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION mkdir -p ~/.R @@ -9,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R CMD INSTALL --build . diff --git a/recipes/bioconductor-rdrtoolbox/meta.yaml b/recipes/bioconductor-rdrtoolbox/meta.yaml index 8bfc0f29537a8..6174b8eff6ad6 100644 --- a/recipes/bioconductor-rdrtoolbox/meta.yaml +++ b/recipes/bioconductor-rdrtoolbox/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2b190cad4839dd6c06b6bca0cbe5996c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -20,12 +20,12 @@ build: # Suggests: golubEsets requirements: build: - - {{ cdt('mesa-libgl-devel') }} - - {{ cdt('mesa-dri-drivers') }} - - {{ cdt('libselinux') }} - - {{ cdt('libxdamage') }} - - {{ cdt('libxxf86vm') }} - - {{ cdt('libxfixes') }} + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - r-base - r-mass @@ -36,7 +36,7 @@ requirements: - r-rgl test: commands: - - LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64:/usr/lib/x86_64-linux-gnu/" $R -e "library('{{ name }}')" + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>= 2)' diff --git a/recipes/bioconductor-reactome.db/meta.yaml b/recipes/bioconductor-reactome.db/meta.yaml index 704ee50e04456..fa937c83e2b98 100644 --- a/recipes/bioconductor-reactome.db/meta.yaml +++ b/recipes/bioconductor-reactome.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 281e47eea8f6bf72502843ad6a48dab0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-reactome.db/post-link.sh b/recipes/bioconductor-reactome.db/post-link.sh index 9ad7c5e625eec..1718435fc61c9 100644 --- a/recipes/bioconductor-reactome.db/post-link.sh +++ b/recipes/bioconductor-reactome.db/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/reactome.db_1.68.0.tar.gz" "https://bioarchive.galaxyproject.org/reactome.db_1.68.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-reactome.db/bioconductor-reactome.db_1.68.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-reactome.db/bioconductor-reactome.db_1.68.0_src_all.tar.gz" ) MD5="281e47eea8f6bf72502843ad6a48dab0" diff --git a/recipes/bioconductor-reactomepa/meta.yaml b/recipes/bioconductor-reactomepa/meta.yaml index 7c39eb0452125..cb8293b9f4120 100644 --- a/recipes/bioconductor-reactomepa/meta.yaml +++ b/recipes/bioconductor-reactomepa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 18193e4881138989bcd4333944982058 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-readat/meta.yaml b/recipes/bioconductor-readat/meta.yaml index e80a10c19aa11..135edb1dfda5e 100644 --- a/recipes/bioconductor-readat/meta.yaml +++ b/recipes/bioconductor-readat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8507f3bf56c2e3ac48cbe25e364a9c45 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-readqpcr/meta.yaml b/recipes/bioconductor-readqpcr/meta.yaml index 4809cc7f32c0c..ae84d5fc2a52b 100644 --- a/recipes/bioconductor-readqpcr/meta.yaml +++ b/recipes/bioconductor-readqpcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 086211aa45bcbff6dcfde3efe7bd781c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-reb/meta.yaml b/recipes/bioconductor-reb/meta.yaml index 0f50c437a20ac..b0edf38ed9c19 100644 --- a/recipes/bioconductor-reb/meta.yaml +++ b/recipes/bioconductor-reb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 207f4057530bd1b3ced23270a7a11925 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rebet/meta.yaml b/recipes/bioconductor-rebet/meta.yaml index 6b1035482d196..446ee1ad97750 100644 --- a/recipes/bioconductor-rebet/meta.yaml +++ b/recipes/bioconductor-rebet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 776e872bca2020d7cc861bfc798478b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-recount/meta.yaml b/recipes/bioconductor-recount/meta.yaml index 482e396c6d7b3..2e39fd2e85179 100644 --- a/recipes/bioconductor-recount/meta.yaml +++ b/recipes/bioconductor-recount/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.10.0" %} +{% set version = "1.10.8" %} {% set name = "recount" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 7647fec40ba9684e08abdc9ec0d660ba + md5: f38d6adb37b28ab63944f325affabe9a build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: AnnotationDbi, BiocManager, BiocStyle (>= 2.5.19), DESeq2, sessioninfo, EnsDb.Hsapiens.v79, GenomicFeatures, knitcitations, knitr (>= 1.6), org.Hs.eg.db, RefManageR, regionReport (>= 1.9.4), rmarkdown (>= 0.9.5), testthat +# Suggests: AnnotationDbi, BiocManager, BiocStyle (>= 2.5.19), DESeq2, sessioninfo, EnsDb.Hsapiens.v79, GenomicFeatures, knitcitations, knitr (>= 1.6), org.Hs.eg.db, RefManageR, regionReport (>= 1.9.4), rmarkdown (>= 0.9.5), testthat (>= 2.1.0) requirements: host: - 'bioconductor-biocparallel >=1.18.0,<1.19.0' diff --git a/recipes/bioconductor-recoup/meta.yaml b/recipes/bioconductor-recoup/meta.yaml index f58606403da2e..60573de4198da 100644 --- a/recipes/bioconductor-recoup/meta.yaml +++ b/recipes/bioconductor-recoup/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3aae87e834e6ba51e39a16426611a8fc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-reder/meta.yaml b/recipes/bioconductor-reder/meta.yaml index 671a8856fb6f4..e89be01bfad75 100644 --- a/recipes/bioconductor-reder/meta.yaml +++ b/recipes/bioconductor-reder/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 429be5e96c997a1bb12c3080610f90c5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -23,11 +23,9 @@ requirements: host: - r-base - r-igraph - - openjdk 8.* run: - r-base - r-igraph - - openjdk 8.* test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-redseq/meta.yaml b/recipes/bioconductor-redseq/meta.yaml index 32e613e2d604e..a612d7d1fafc4 100644 --- a/recipes/bioconductor-redseq/meta.yaml +++ b/recipes/bioconductor-redseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 28992addf8f0a83b68e7a3188cd5f442 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-refnet/meta.yaml b/recipes/bioconductor-refnet/meta.yaml index fcfaaf6c232d1..a1e6f629e5023 100644 --- a/recipes/bioconductor-refnet/meta.yaml +++ b/recipes/bioconductor-refnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fef9148fdfb0828b0d06d6e6ec1d210a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-refplus/meta.yaml b/recipes/bioconductor-refplus/meta.yaml index d2c11f064cc65..b91c978939b1a 100644 --- a/recipes/bioconductor-refplus/meta.yaml +++ b/recipes/bioconductor-refplus/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d56a965cd314a7cb995c993c6512a6c3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-regioner/meta.yaml b/recipes/bioconductor-regioner/meta.yaml index 4048b67a96f90..91b32ebcb46d0 100644 --- a/recipes/bioconductor-regioner/meta.yaml +++ b/recipes/bioconductor-regioner/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.16.0" %} +{% set version = "1.16.2" %} {% set name = "regioneR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 866be8383faaeecd5b6f3faf5aceb4cd + md5: c861816ed5c9d0e05a01648e4501f272 build: number: 0 rpaths: diff --git a/recipes/bioconductor-regionreport/meta.yaml b/recipes/bioconductor-regionreport/meta.yaml index efecf721d8515..6a89c20aeccc2 100644 --- a/recipes/bioconductor-regionreport/meta.yaml +++ b/recipes/bioconductor-regionreport/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.2" %} {% set name = "regionReport" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: c2a1d5e7993c04d7783230f9f13ad1d9 + md5: 57c600cab25e846afa839c1d4a8bd7dd build: number: 0 rpaths: diff --git a/recipes/bioconductor-regparallel/meta.yaml b/recipes/bioconductor-regparallel/meta.yaml index 8a9286f7bc7a1..cc4e8f36d6474 100644 --- a/recipes/bioconductor-regparallel/meta.yaml +++ b/recipes/bioconductor-regparallel/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cebd94e58b4216cd3c14e4586d8761e1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-regparallel/post-link.sh b/recipes/bioconductor-regparallel/post-link.sh index 6d8f8ed3b782d..1506a5914b4f3 100644 --- a/recipes/bioconductor-regparallel/post-link.sh +++ b/recipes/bioconductor-regparallel/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RegParallel_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/RegParallel_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-regparallel/bioconductor-regparallel_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-regparallel/bioconductor-regparallel_1.2.0_src_all.tar.gz" ) MD5="cebd94e58b4216cd3c14e4586d8761e1" diff --git a/recipes/bioconductor-regsplice/meta.yaml b/recipes/bioconductor-regsplice/meta.yaml index cc3f59e68765f..8f1230a6258be 100644 --- a/recipes/bioconductor-regsplice/meta.yaml +++ b/recipes/bioconductor-regsplice/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 32b236f311812f449bd9bd81b0a2bd3c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-remp/meta.yaml b/recipes/bioconductor-remp/meta.yaml index 2643cc507516c..75a86c3b6c429 100644 --- a/recipes/bioconductor-remp/meta.yaml +++ b/recipes/bioconductor-remp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0a01ae2905bd2cfe7ad1f6474b55edf0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-repitools/meta.yaml b/recipes/bioconductor-repitools/meta.yaml index a8cbdb74bdf80..27b4fb0ae719a 100644 --- a/recipes/bioconductor-repitools/meta.yaml +++ b/recipes/bioconductor-repitools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: be4217174c229d982e547851342de8d8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-reportingtools/meta.yaml b/recipes/bioconductor-reportingtools/meta.yaml index 8608dca6ea1b0..8e4e8beedb92c 100644 --- a/recipes/bioconductor-reportingtools/meta.yaml +++ b/recipes/bioconductor-reportingtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 10cc6f059f95b306df1b1e3ddd7a788d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-repviz/meta.yaml b/recipes/bioconductor-repviz/meta.yaml index 34571a160a69e..42021e8db8edd 100644 --- a/recipes/bioconductor-repviz/meta.yaml +++ b/recipes/bioconductor-repviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d0c0a511327feb084f01ac4c22b56ae7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-reqon/meta.yaml b/recipes/bioconductor-reqon/meta.yaml index 92272f069639f..d3dca3f1a7fd3 100644 --- a/recipes/bioconductor-reqon/meta.yaml +++ b/recipes/bioconductor-reqon/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3d26cf04e111979ca2b1e349c4256720 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-restfulse/meta.yaml b/recipes/bioconductor-restfulse/meta.yaml index a77ac9b63d00e..148775cbb105c 100644 --- a/recipes/bioconductor-restfulse/meta.yaml +++ b/recipes/bioconductor-restfulse/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ed78e68f9ff60490bed0ed16933bfc49 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-restfulsedata/meta.yaml b/recipes/bioconductor-restfulsedata/meta.yaml index 050bc653bac2a..8a6ada275de5a 100644 --- a/recipes/bioconductor-restfulsedata/meta.yaml +++ b/recipes/bioconductor-restfulsedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b057b9fc07de16899fa3ef2879d06f33 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-restfulsedata/post-link.sh b/recipes/bioconductor-restfulsedata/post-link.sh index a7db2616265d8..59f03a955830f 100644 --- a/recipes/bioconductor-restfulsedata/post-link.sh +++ b/recipes/bioconductor-restfulsedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/restfulSEData_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/restfulSEData_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-restfulsedata/bioconductor-restfulsedata_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-restfulsedata/bioconductor-restfulsedata_1.6.0_src_all.tar.gz" ) MD5="b057b9fc07de16899fa3ef2879d06f33" diff --git a/recipes/bioconductor-rexposome/meta.yaml b/recipes/bioconductor-rexposome/meta.yaml index 1c665848c8f58..511e704c6c779 100644 --- a/recipes/bioconductor-rexposome/meta.yaml +++ b/recipes/bioconductor-rexposome/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6aa1e97a833510086fea68191f1f8c68 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rforproteomics/meta.yaml b/recipes/bioconductor-rforproteomics/meta.yaml index bf9c722bb1647..ed3cab2e512b2 100644 --- a/recipes/bioconductor-rforproteomics/meta.yaml +++ b/recipes/bioconductor-rforproteomics/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b3512efa8224bd8069e638bae018384b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rforproteomics/post-link.sh b/recipes/bioconductor-rforproteomics/post-link.sh index 0d8852d5f4b31..a4be55511eec4 100644 --- a/recipes/bioconductor-rforproteomics/post-link.sh +++ b/recipes/bioconductor-rforproteomics/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RforProteomics_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/RforProteomics_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rforproteomics/bioconductor-rforproteomics_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rforproteomics/bioconductor-rforproteomics_1.22.0_src_all.tar.gz" ) MD5="b3512efa8224bd8069e638bae018384b" diff --git a/recipes/bioconductor-rfpred/meta.yaml b/recipes/bioconductor-rfpred/meta.yaml index dab9bd3836acb..4953ff20ad126 100644 --- a/recipes/bioconductor-rfpred/meta.yaml +++ b/recipes/bioconductor-rfpred/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 42a8359f2e811af6d85b9944b07b6d26 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgadem/meta.yaml b/recipes/bioconductor-rgadem/meta.yaml index 57d3df34990d6..6c432eff99044 100644 --- a/recipes/bioconductor-rgadem/meta.yaml +++ b/recipes/bioconductor-rgadem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e74557572cacc6c9fee8f5112fdf3df6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgalaxy/meta.yaml b/recipes/bioconductor-rgalaxy/meta.yaml index b4a81ba048f61..f53a1b5369d78 100644 --- a/recipes/bioconductor-rgalaxy/meta.yaml +++ b/recipes/bioconductor-rgalaxy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f6f4addc405440ff80b290bdbacfb468 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgin/meta.yaml b/recipes/bioconductor-rgin/meta.yaml index b966e3732d5cc..b94bd1817c779 100644 --- a/recipes/bioconductor-rgin/meta.yaml +++ b/recipes/bioconductor-rgin/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f67682923c47b4b278d728cf815f8a44 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgmql/meta.yaml b/recipes/bioconductor-rgmql/meta.yaml index c48e4ff360e17..c99e8903fab25 100644 --- a/recipes/bioconductor-rgmql/meta.yaml +++ b/recipes/bioconductor-rgmql/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.1" %} {% set name = "RGMQL" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: f8dfc3cf424d23254cb855f1672d1141 + md5: 4d66a93139d143dadf4eeb716df01b58 build: number: 0 rpaths: diff --git a/recipes/bioconductor-rgmqllib/meta.yaml b/recipes/bioconductor-rgmqllib/meta.yaml index d79fc34dddaf8..7a3ab6c260a59 100644 --- a/recipes/bioconductor-rgmqllib/meta.yaml +++ b/recipes/bioconductor-rgmqllib/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: da01b2fe647643af1df9d3563c61f446 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgmqllib/post-link.sh b/recipes/bioconductor-rgmqllib/post-link.sh index 1db7979bca80b..f13de1fc7241f 100644 --- a/recipes/bioconductor-rgmqllib/post-link.sh +++ b/recipes/bioconductor-rgmqllib/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RGMQLlib_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/RGMQLlib_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rgmqllib/bioconductor-rgmqllib_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rgmqllib/bioconductor-rgmqllib_1.4.0_src_all.tar.gz" ) MD5="da01b2fe647643af1df9d3563c61f446" diff --git a/recipes/bioconductor-rgraph2js/meta.yaml b/recipes/bioconductor-rgraph2js/meta.yaml index b60610d202f82..042f22a3b81f2 100644 --- a/recipes/bioconductor-rgraph2js/meta.yaml +++ b/recipes/bioconductor-rgraph2js/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd88db04ecb5dbe766ee4e2d4bdac794 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgraphviz/meta.yaml b/recipes/bioconductor-rgraphviz/meta.yaml index f56df72cb6c06..44f86d9a3c021 100644 --- a/recipes/bioconductor-rgraphviz/meta.yaml +++ b/recipes/bioconductor-rgraphviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 939f3939e3bed3a546143ed40f95e722 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgreat/meta.yaml b/recipes/bioconductor-rgreat/meta.yaml index 3ca67d21c01aa..f57b86f42dc54 100644 --- a/recipes/bioconductor-rgreat/meta.yaml +++ b/recipes/bioconductor-rgreat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4c2fca6609f651d5206ce6d7c3cd0d89 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgsea/meta.yaml b/recipes/bioconductor-rgsea/meta.yaml index 2db2e51b50a9f..4132fcb2256bc 100644 --- a/recipes/bioconductor-rgsea/meta.yaml +++ b/recipes/bioconductor-rgsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e981c0f0c51104ee88b7ac9c89154ad6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgsepd/meta.yaml b/recipes/bioconductor-rgsepd/meta.yaml index 4c2dac49391b8..8b0a6d6351111 100644 --- a/recipes/bioconductor-rgsepd/meta.yaml +++ b/recipes/bioconductor-rgsepd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f42efca6296232068359728818cd0365 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34a.db/meta.yaml b/recipes/bioconductor-rgu34a.db/meta.yaml index fea178dd10ca1..35f614bbd9fb2 100644 --- a/recipes/bioconductor-rgu34a.db/meta.yaml +++ b/recipes/bioconductor-rgu34a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b8e7fec45ef9e1423cda3171bb12e34c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34acdf/meta.yaml b/recipes/bioconductor-rgu34acdf/meta.yaml index 0cb82328fc63d..a9efe5a6aa716 100644 --- a/recipes/bioconductor-rgu34acdf/meta.yaml +++ b/recipes/bioconductor-rgu34acdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dcfa7ecce00e529f93809759ed837b8d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34aprobe/meta.yaml b/recipes/bioconductor-rgu34aprobe/meta.yaml index c9330882cf6d1..34a0db633baee 100644 --- a/recipes/bioconductor-rgu34aprobe/meta.yaml +++ b/recipes/bioconductor-rgu34aprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 902aee259a2894fa8713c4bf9266c0e2 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34b.db/meta.yaml b/recipes/bioconductor-rgu34b.db/meta.yaml index 442e2e0e2dc55..e3957033fc81e 100644 --- a/recipes/bioconductor-rgu34b.db/meta.yaml +++ b/recipes/bioconductor-rgu34b.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d2ad468820c1cfbe94297d423237f5bb build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34bcdf/meta.yaml b/recipes/bioconductor-rgu34bcdf/meta.yaml index 3c01646d05b31..b446bba14d6d0 100644 --- a/recipes/bioconductor-rgu34bcdf/meta.yaml +++ b/recipes/bioconductor-rgu34bcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 428b3a39f0d8addd7d863539b8cda6ea build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34bprobe/meta.yaml b/recipes/bioconductor-rgu34bprobe/meta.yaml index 0711b0b48acaf..1032384581441 100644 --- a/recipes/bioconductor-rgu34bprobe/meta.yaml +++ b/recipes/bioconductor-rgu34bprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2d6488309c5e54231a18e2ecf5608bb1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34c.db/meta.yaml b/recipes/bioconductor-rgu34c.db/meta.yaml index d915e81e3da89..0c803434e690d 100644 --- a/recipes/bioconductor-rgu34c.db/meta.yaml +++ b/recipes/bioconductor-rgu34c.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 59b66663b8d419599d48301661bfa2c3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34ccdf/meta.yaml b/recipes/bioconductor-rgu34ccdf/meta.yaml index a90d9f91a692f..ae9b21a8b8e15 100644 --- a/recipes/bioconductor-rgu34ccdf/meta.yaml +++ b/recipes/bioconductor-rgu34ccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 556a7130086004d26095594da31c6410 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgu34cprobe/meta.yaml b/recipes/bioconductor-rgu34cprobe/meta.yaml index b85548f88b7dc..0056c0aaf5fc0 100644 --- a/recipes/bioconductor-rgu34cprobe/meta.yaml +++ b/recipes/bioconductor-rgu34cprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d1a6c433acd30b95fa7be89147105b74 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rguatlas4k.db/meta.yaml b/recipes/bioconductor-rguatlas4k.db/meta.yaml index bfd3a458c7e4f..81d4d9146db19 100644 --- a/recipes/bioconductor-rguatlas4k.db/meta.yaml +++ b/recipes/bioconductor-rguatlas4k.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6a360676e08319ec5465c47c758110bd build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgug4105a.db/meta.yaml b/recipes/bioconductor-rgug4105a.db/meta.yaml index f179ffa29a869..5135530a8eb7b 100644 --- a/recipes/bioconductor-rgug4105a.db/meta.yaml +++ b/recipes/bioconductor-rgug4105a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3ccf354083ae36a7ae687fb8209c4e5b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgug4130a.db/meta.yaml b/recipes/bioconductor-rgug4130a.db/meta.yaml index 8da55cef21454..36aef5e30a122 100644 --- a/recipes/bioconductor-rgug4130a.db/meta.yaml +++ b/recipes/bioconductor-rgug4130a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 13643ac109aaf12590a5b6e379609b79 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rgug4131a.db/meta.yaml b/recipes/bioconductor-rgug4131a.db/meta.yaml index ecd31d6ecb2e2..2f4e8288150c7 100644 --- a/recipes/bioconductor-rgug4131a.db/meta.yaml +++ b/recipes/bioconductor-rgug4131a.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1168d4906fb8ce60cbc0fa6cfa3b8ec6 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rhdf5/meta.yaml b/recipes/bioconductor-rhdf5/meta.yaml index 83b3b92e5d6a7..c67a42973a6f7 100644 --- a/recipes/bioconductor-rhdf5/meta.yaml +++ b/recipes/bioconductor-rhdf5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7b4ac800b93750924391110fa7e93d60 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rhdf5client/meta.yaml b/recipes/bioconductor-rhdf5client/meta.yaml index 6104f0f2f638b..e3312fb064d8a 100644 --- a/recipes/bioconductor-rhdf5client/meta.yaml +++ b/recipes/bioconductor-rhdf5client/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.6.0" %} +{% set version = "1.6.1" %} {% set name = "rhdf5client" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 52a82ed4f7216b08471cb7c0a51c69f6 + md5: 47721d9b1cda750b431fdbd5192bffb7 build: number: 0 rpaths: diff --git a/recipes/bioconductor-rhdf5lib/meta.yaml b/recipes/bioconductor-rhdf5lib/meta.yaml index 6063a962c78cd..10e92ad3f81ea 100644 --- a/recipes/bioconductor-rhdf5lib/meta.yaml +++ b/recipes/bioconductor-rhdf5lib/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a669973a49d9f7f38d5a0b02635794d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rhesus.db0/meta.yaml b/recipes/bioconductor-rhesus.db0/meta.yaml index c82292c50a162..27ce9a32cedca 100644 --- a/recipes/bioconductor-rhesus.db0/meta.yaml +++ b/recipes/bioconductor-rhesus.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 48321e16fd44fa3db5975b1b918c9865 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rhesus.db0/post-link.sh b/recipes/bioconductor-rhesus.db0/post-link.sh index c3d09845242c1..e58721890e7fa 100644 --- a/recipes/bioconductor-rhesus.db0/post-link.sh +++ b/recipes/bioconductor-rhesus.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/rhesus.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/rhesus.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rhesus.db0/bioconductor-rhesus.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rhesus.db0/bioconductor-rhesus.db0_3.8.2_src_all.tar.gz" ) MD5="48321e16fd44fa3db5975b1b918c9865" diff --git a/recipes/bioconductor-rhesuscdf/meta.yaml b/recipes/bioconductor-rhesuscdf/meta.yaml index 3c47997d27155..9dd9c8b4d75cd 100644 --- a/recipes/bioconductor-rhesuscdf/meta.yaml +++ b/recipes/bioconductor-rhesuscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 994e16da5dd31bc2796d0da40aa2634f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rhesusprobe/meta.yaml b/recipes/bioconductor-rhesusprobe/meta.yaml index f7b73dccec90a..f4b568b35c85d 100644 --- a/recipes/bioconductor-rhesusprobe/meta.yaml +++ b/recipes/bioconductor-rhesusprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4169c1c997c4c08b027bc7489533e11e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rheumaticconditionwollbold/meta.yaml b/recipes/bioconductor-rheumaticconditionwollbold/meta.yaml index d6cad9a911dea..8a26ca2bb8964 100644 --- a/recipes/bioconductor-rheumaticconditionwollbold/meta.yaml +++ b/recipes/bioconductor-rheumaticconditionwollbold/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b5d1fcb87c69694aaf7e3ceb24b15452 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rheumaticconditionwollbold/post-link.sh b/recipes/bioconductor-rheumaticconditionwollbold/post-link.sh index b5c657b533a72..c03efdae4f043 100644 --- a/recipes/bioconductor-rheumaticconditionwollbold/post-link.sh +++ b/recipes/bioconductor-rheumaticconditionwollbold/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/rheumaticConditionWOLLBOLD_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/rheumaticConditionWOLLBOLD_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rheumaticconditionwollbold/bioconductor-rheumaticconditionwollbold_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rheumaticconditionwollbold/bioconductor-rheumaticconditionwollbold_1.22.0_src_all.tar.gz" ) MD5="b5d1fcb87c69694aaf7e3ceb24b15452" diff --git a/recipes/bioconductor-rhisat2/meta.yaml b/recipes/bioconductor-rhisat2/meta.yaml index fb4d7fd64f41f..9c44575ae9363 100644 --- a/recipes/bioconductor-rhisat2/meta.yaml +++ b/recipes/bioconductor-rhisat2/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.3" %} {% set name = "Rhisat2" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: a495d34bd02a2225255f7e8046a1df27 + md5: f9d31bd584dfe3437fa23e13ad57bf8e build: number: 0 rpaths: diff --git a/recipes/bioconductor-rhtslib/build.sh b/recipes/bioconductor-rhtslib/build.sh index 3f7e8934d1721..87424eba6cec7 100644 --- a/recipes/bioconductor-rhtslib/build.sh +++ b/recipes/bioconductor-rhtslib/build.sh @@ -1,6 +1,4 @@ #!/bin/bash -export C_INCLUDE_PATH=${PREFIX}/include -export LD_LIBRARY_PATH=${PREFIX}/lib mv DESCRIPTION DESCRIPTION.old grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION mkdir -p ~/.R diff --git a/recipes/bioconductor-rhtslib/meta.yaml b/recipes/bioconductor-rhtslib/meta.yaml index 75b202ae436db..21c92fa252545 100644 --- a/recipes/bioconductor-rhtslib/meta.yaml +++ b/recipes/bioconductor-rhtslib/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b15beb320dcfd0b7653bcce0a0623899 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,15 +21,15 @@ requirements: host: - 'bioconductor-zlibbioc >=1.30.0,<1.31.0' - r-base + - bzip2 - xz - zlib - - bzip2 run: - 'bioconductor-zlibbioc >=1.30.0,<1.31.0' - r-base + - bzip2 - xz - zlib - - bzip2 build: - {{ compiler('c') }} - automake diff --git a/recipes/bioconductor-rhvdm/meta.yaml b/recipes/bioconductor-rhvdm/meta.yaml index 08870469b8d73..d810b74c8c2eb 100644 --- a/recipes/bioconductor-rhvdm/meta.yaml +++ b/recipes/bioconductor-rhvdm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 30ac36983f2746d0d2ee2be4ee6ba55d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ri16cod.db/meta.yaml b/recipes/bioconductor-ri16cod.db/meta.yaml index 82195cdd54d55..c4cba7cde8763 100644 --- a/recipes/bioconductor-ri16cod.db/meta.yaml +++ b/recipes/bioconductor-ri16cod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cd01b429295fdbba21dbe566effacbdd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-riboprofiling/meta.yaml b/recipes/bioconductor-riboprofiling/meta.yaml index da623cb7ce78b..f7402979912af 100644 --- a/recipes/bioconductor-riboprofiling/meta.yaml +++ b/recipes/bioconductor-riboprofiling/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 30da7540d39e7c752c224c226322f6df build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-riboseqr/meta.yaml b/recipes/bioconductor-riboseqr/meta.yaml index dc82ef398644c..6bc5e2327f471 100644 --- a/recipes/bioconductor-riboseqr/meta.yaml +++ b/recipes/bioconductor-riboseqr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4e9c3e5e2eac839d8fc9fac1bac3b5b7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ribosomaldatabaseproject11.5mgdb/meta.yaml b/recipes/bioconductor-ribosomaldatabaseproject11.5mgdb/meta.yaml index 81cdb69589996..da52ca1fda248 100644 --- a/recipes/bioconductor-ribosomaldatabaseproject11.5mgdb/meta.yaml +++ b/recipes/bioconductor-ribosomaldatabaseproject11.5mgdb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b50b3dedc5ed906df4f335c80ad072cf build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ricecdf/meta.yaml b/recipes/bioconductor-ricecdf/meta.yaml index 7bd5b078c6669..3638853250fee 100644 --- a/recipes/bioconductor-ricecdf/meta.yaml +++ b/recipes/bioconductor-ricecdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 51db6f51f4adcfb7f4940d07668db8b8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-riceprobe/meta.yaml b/recipes/bioconductor-riceprobe/meta.yaml index 8e549733cb655..52cbfe58c23e5 100644 --- a/recipes/bioconductor-riceprobe/meta.yaml +++ b/recipes/bioconductor-riceprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2fac7746c343546cf30e6d54bc1e2019 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rimmport/meta.yaml b/recipes/bioconductor-rimmport/meta.yaml index cd87d6ad7365f..387f59a495efd 100644 --- a/recipes/bioconductor-rimmport/meta.yaml +++ b/recipes/bioconductor-rimmport/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 74e9aacd1917e4ea6b968bd30371db56 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ringo/meta.yaml b/recipes/bioconductor-ringo/meta.yaml index 56d4e2d376bc3..f04897dd2a68c 100644 --- a/recipes/bioconductor-ringo/meta.yaml +++ b/recipes/bioconductor-ringo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 905cfe4b4a6f9bf4bcfbdf0250c7cc0c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ripseeker/meta.yaml b/recipes/bioconductor-ripseeker/meta.yaml index 0f0f196e6cfb0..7bc7ba547b8c9 100644 --- a/recipes/bioconductor-ripseeker/meta.yaml +++ b/recipes/bioconductor-ripseeker/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f2b707b4fca1df7b241ef4b24a85fcb6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ripseekerdata/meta.yaml b/recipes/bioconductor-ripseekerdata/meta.yaml index 5a696bea8eef3..c43698e89f388 100644 --- a/recipes/bioconductor-ripseekerdata/meta.yaml +++ b/recipes/bioconductor-ripseekerdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5393a250ac8618929a6240d902c738d1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ripseekerdata/post-link.sh b/recipes/bioconductor-ripseekerdata/post-link.sh index 6b9c272238483..430e94e129c8f 100644 --- a/recipes/bioconductor-ripseekerdata/post-link.sh +++ b/recipes/bioconductor-ripseekerdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RIPSeekerData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/RIPSeekerData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ripseekerdata/bioconductor-ripseekerdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ripseekerdata/bioconductor-ripseekerdata_1.20.0_src_all.tar.gz" ) MD5="5393a250ac8618929a6240d902c738d1" diff --git a/recipes/bioconductor-risa/meta.yaml b/recipes/bioconductor-risa/meta.yaml index e3ac635d5a54d..d87db89f292fc 100644 --- a/recipes/bioconductor-risa/meta.yaml +++ b/recipes/bioconductor-risa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cae993c23c4cf66321261b1115a18500 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ritan/meta.yaml b/recipes/bioconductor-ritan/meta.yaml index 91af2a016aa52..8f3a5fe7805b5 100644 --- a/recipes/bioconductor-ritan/meta.yaml +++ b/recipes/bioconductor-ritan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d9be8da5c38acb02332534452faf630c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ritandata/meta.yaml b/recipes/bioconductor-ritandata/meta.yaml index 85e46028f66ed..5585f75a3368f 100644 --- a/recipes/bioconductor-ritandata/meta.yaml +++ b/recipes/bioconductor-ritandata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1e056a9bac392cc82d544af54324449e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ritandata/post-link.sh b/recipes/bioconductor-ritandata/post-link.sh index c4b3047119765..b369de0efeac5 100644 --- a/recipes/bioconductor-ritandata/post-link.sh +++ b/recipes/bioconductor-ritandata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RITANdata_1.8.0.tar.gz" "https://bioarchive.galaxyproject.org/RITANdata_1.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ritandata/bioconductor-ritandata_1.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ritandata/bioconductor-ritandata_1.8.0_src_all.tar.gz" ) MD5="1e056a9bac392cc82d544af54324449e" diff --git a/recipes/bioconductor-river/meta.yaml b/recipes/bioconductor-river/meta.yaml index 6cd0a9f07c756..cdae6150f36ce 100644 --- a/recipes/bioconductor-river/meta.yaml +++ b/recipes/bioconductor-river/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 87b2517810b6bdad09d5cb027946a3fe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rjmcmcnucleosomes/meta.yaml b/recipes/bioconductor-rjmcmcnucleosomes/meta.yaml index 3bb915348dbf9..7486b30d3e03a 100644 --- a/recipes/bioconductor-rjmcmcnucleosomes/meta.yaml +++ b/recipes/bioconductor-rjmcmcnucleosomes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 855eb918b7b4c78face174a2b7f4ede2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rlmm/meta.yaml b/recipes/bioconductor-rlmm/meta.yaml index 6c7536297c0a9..281bca9cb7ba3 100644 --- a/recipes/bioconductor-rlmm/meta.yaml +++ b/recipes/bioconductor-rlmm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a3796e7da8e9a0dc62085026207c22ca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rmagpie/meta.yaml b/recipes/bioconductor-rmagpie/meta.yaml index 66fa3b33c8172..6c71b67b8920c 100644 --- a/recipes/bioconductor-rmagpie/meta.yaml +++ b/recipes/bioconductor-rmagpie/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 42d34c1f3fa1f5390b12488fe0c3da9a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rmassbank/meta.yaml b/recipes/bioconductor-rmassbank/meta.yaml index b0339209f8a17..60a72fa2338d1 100644 --- a/recipes/bioconductor-rmassbank/meta.yaml +++ b/recipes/bioconductor-rmassbank/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9cadbd9a88b737eed282e0563f918b64 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -33,7 +33,6 @@ requirements: - r-rjson - r-xml - r-yaml - - openbabel run: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-msnbase >=2.10.0,<2.11.0' @@ -48,7 +47,6 @@ requirements: - r-rjson - r-xml - r-yaml - - openbabel build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-rmassbankdata/meta.yaml b/recipes/bioconductor-rmassbankdata/meta.yaml index 0fa8a9344444d..23dd265b335ae 100644 --- a/recipes/bioconductor-rmassbankdata/meta.yaml +++ b/recipes/bioconductor-rmassbankdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fc66ede0eb4d7ad10d96b38d2c1a212a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rmassbankdata/post-link.sh b/recipes/bioconductor-rmassbankdata/post-link.sh index 763e2fbd95301..4646dfba66e08 100644 --- a/recipes/bioconductor-rmassbankdata/post-link.sh +++ b/recipes/bioconductor-rmassbankdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RMassBankData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/RMassBankData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rmassbankdata/bioconductor-rmassbankdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rmassbankdata/bioconductor-rmassbankdata_1.22.0_src_all.tar.gz" ) MD5="fc66ede0eb4d7ad10d96b38d2c1a212a" diff --git a/recipes/bioconductor-rmat/meta.yaml b/recipes/bioconductor-rmat/meta.yaml index a6559056aca10..c7ea71489777c 100644 --- a/recipes/bioconductor-rmat/meta.yaml +++ b/recipes/bioconductor-rmat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 707db595db889f056a62d5802dc0e291 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -25,14 +25,12 @@ requirements: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - r-base - - gsl run: - 'bioconductor-affxparser >=1.56.0,<1.57.0' - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' - r-base - - gsl build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-rmelting/meta.yaml b/recipes/bioconductor-rmelting/meta.yaml index b0d546fb01a2b..c8b2b230b12ec 100644 --- a/recipes/bioconductor-rmelting/meta.yaml +++ b/recipes/bioconductor-rmelting/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 169898a7e014553431e1adf202502a20 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rmir.hs.mirna/meta.yaml b/recipes/bioconductor-rmir.hs.mirna/meta.yaml index 4be30325f1870..fc27d1a83109b 100644 --- a/recipes/bioconductor-rmir.hs.mirna/meta.yaml +++ b/recipes/bioconductor-rmir.hs.mirna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4aedac188382447d9907d2617aa2e8e6 build: - number: 4 + number: 5 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rmir.hsa/meta.yaml b/recipes/bioconductor-rmir.hsa/meta.yaml index 5e53c0ca58580..d2f441d266388 100644 --- a/recipes/bioconductor-rmir.hsa/meta.yaml +++ b/recipes/bioconductor-rmir.hsa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f22a18d1a34d12f8fc4ba3daaf1379fd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rmir/meta.yaml b/recipes/bioconductor-rmir/meta.yaml index 797845f203345..f084c5b2c599e 100644 --- a/recipes/bioconductor-rmir/meta.yaml +++ b/recipes/bioconductor-rmir/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 648f2070b121489b7d478d80cfe774a0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rmmquant/meta.yaml b/recipes/bioconductor-rmmquant/meta.yaml index 1cff310ed7c74..35d7a875eab6e 100644 --- a/recipes/bioconductor-rmmquant/meta.yaml +++ b/recipes/bioconductor-rmmquant/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 050e95348776d7b8b0b5bdfb08715b21 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnadecay/meta.yaml b/recipes/bioconductor-rnadecay/meta.yaml index 9a32dee35d77b..a3c3e59788acf 100644 --- a/recipes/bioconductor-rnadecay/meta.yaml +++ b/recipes/bioconductor-rnadecay/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7fe84f6a5edb236cf8dcd1a88f649155 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnagilentdesign028282.db/meta.yaml b/recipes/bioconductor-rnagilentdesign028282.db/meta.yaml index 731bfb2ec54d1..d073073b5f45f 100644 --- a/recipes/bioconductor-rnagilentdesign028282.db/meta.yaml +++ b/recipes/bioconductor-rnagilentdesign028282.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 72cafb0f7514a81f462acb3248e21aa9 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnainteract/meta.yaml b/recipes/bioconductor-rnainteract/meta.yaml index 1ea383a0d496b..0f831ca09b7ce 100644 --- a/recipes/bioconductor-rnainteract/meta.yaml +++ b/recipes/bioconductor-rnainteract/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: edc219a8b4c1af4ee194087c5e34bacf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnainteractmapk/meta.yaml b/recipes/bioconductor-rnainteractmapk/meta.yaml index 832ca76e6b560..2b0bd9b888808 100644 --- a/recipes/bioconductor-rnainteractmapk/meta.yaml +++ b/recipes/bioconductor-rnainteractmapk/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d8ae6fcd34f94ad097f1948ccdefcc5e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnainteractmapk/post-link.sh b/recipes/bioconductor-rnainteractmapk/post-link.sh index e4842698b4dec..1f1d31b87a196 100644 --- a/recipes/bioconductor-rnainteractmapk/post-link.sh +++ b/recipes/bioconductor-rnainteractmapk/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RNAinteractMAPK_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/RNAinteractMAPK_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnainteractmapk/bioconductor-rnainteractmapk_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnainteractmapk/bioconductor-rnainteractmapk_1.22.0_src_all.tar.gz" ) MD5="d8ae6fcd34f94ad097f1948ccdefcc5e" diff --git a/recipes/bioconductor-rnaither/meta.yaml b/recipes/bioconductor-rnaither/meta.yaml index eacb3354de4b1..95576a427cdd6 100644 --- a/recipes/bioconductor-rnaither/meta.yaml +++ b/recipes/bioconductor-rnaither/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 49c001354fe14669a8996adbd56f79ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaprobr/meta.yaml b/recipes/bioconductor-rnaprobr/meta.yaml index 4e5853c626355..b22e05b59e151 100644 --- a/recipes/bioconductor-rnaprobr/meta.yaml +++ b/recipes/bioconductor-rnaprobr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4fd50c68767817514dfd3f24012ee68a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaseqcomp/meta.yaml b/recipes/bioconductor-rnaseqcomp/meta.yaml index 03a99d44406c7..3248744153bf6 100644 --- a/recipes/bioconductor-rnaseqcomp/meta.yaml +++ b/recipes/bioconductor-rnaseqcomp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 070446c7cfa966892b854ce6fdc4b6ab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml b/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml index 394e2918c7014..0fd29067b4c4a 100644 --- a/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml +++ b/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 355b2ea49c593b0f4d0284d7c47f8686 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/post-link.sh b/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/post-link.sh index 0bb074124ac20..7d11eb2983336 100644 --- a/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/post-link.sh +++ b/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RNAseqData.HNRNPC.bam.chr14_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/RNAseqData.HNRNPC.bam.chr14_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnaseqdata.hnrnpc.bam.chr14/bioconductor-rnaseqdata.hnrnpc.bam.chr14_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnaseqdata.hnrnpc.bam.chr14/bioconductor-rnaseqdata.hnrnpc.bam.chr14_0.22.0_src_all.tar.gz" ) MD5="355b2ea49c593b0f4d0284d7c47f8686" diff --git a/recipes/bioconductor-rnaseqmap/meta.yaml b/recipes/bioconductor-rnaseqmap/meta.yaml index 93592a4ed0410..3dfc31e090e51 100644 --- a/recipes/bioconductor-rnaseqmap/meta.yaml +++ b/recipes/bioconductor-rnaseqmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3534ea405fc475ddc1e002f7918f20f3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaseqpower/meta.yaml b/recipes/bioconductor-rnaseqpower/meta.yaml index a25759e5884e8..5e43cb5c7e449 100644 --- a/recipes/bioconductor-rnaseqpower/meta.yaml +++ b/recipes/bioconductor-rnaseqpower/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 128398a48bdc1d1cb763643a72e4725d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaseqr/meta.yaml b/recipes/bioconductor-rnaseqr/meta.yaml index 9a1664e5d1ecf..26f1a087a5137 100644 --- a/recipes/bioconductor-rnaseqr/meta.yaml +++ b/recipes/bioconductor-rnaseqr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.1" %} {% set name = "RNASeqR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: e502bb689c1b44c013987e29600a0424 + md5: f22237e57f8ee4dd44d961f5a8b55f2f build: number: 0 rpaths: @@ -45,7 +45,6 @@ requirements: - r-reshape2 - r-reticulate - r-stringr - - python 2.7 run: - 'bioconductor-ballgown >=2.16.0,<2.17.0' - 'bioconductor-biostrings >=2.52.0,<2.53.0' @@ -71,7 +70,6 @@ requirements: - r-reshape2 - r-reticulate - r-stringr - - python 2.7 test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-rnaseqrdata/meta.yaml b/recipes/bioconductor-rnaseqrdata/meta.yaml index 0fe5dd550f870..0a3014d8dfae6 100644 --- a/recipes/bioconductor-rnaseqrdata/meta.yaml +++ b/recipes/bioconductor-rnaseqrdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 48362fed1dbde122a713bc0c238b85ce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaseqrdata/post-link.sh b/recipes/bioconductor-rnaseqrdata/post-link.sh index af25880cf6f64..c914a2be8e3cf 100644 --- a/recipes/bioconductor-rnaseqrdata/post-link.sh +++ b/recipes/bioconductor-rnaseqrdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RNASeqRData_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/RNASeqRData_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnaseqrdata/bioconductor-rnaseqrdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnaseqrdata/bioconductor-rnaseqrdata_1.2.0_src_all.tar.gz" ) MD5="48362fed1dbde122a713bc0c238b85ce" diff --git a/recipes/bioconductor-rnaseqsamplesize/meta.yaml b/recipes/bioconductor-rnaseqsamplesize/meta.yaml index c0595cce21938..5a23a23ef3f86 100644 --- a/recipes/bioconductor-rnaseqsamplesize/meta.yaml +++ b/recipes/bioconductor-rnaseqsamplesize/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 58a066d152246ca13c8436c1be1a17d9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaseqsamplesizedata/meta.yaml b/recipes/bioconductor-rnaseqsamplesizedata/meta.yaml index 931ccdfe9eef7..67c68d5522bf2 100644 --- a/recipes/bioconductor-rnaseqsamplesizedata/meta.yaml +++ b/recipes/bioconductor-rnaseqsamplesizedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b5807095357790233a3b0901e093d4e2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnaseqsamplesizedata/post-link.sh b/recipes/bioconductor-rnaseqsamplesizedata/post-link.sh index b78fac6dcc5fa..612d3b9caa2c4 100644 --- a/recipes/bioconductor-rnaseqsamplesizedata/post-link.sh +++ b/recipes/bioconductor-rnaseqsamplesizedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RnaSeqSampleSizeData_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/RnaSeqSampleSizeData_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnaseqsamplesizedata/bioconductor-rnaseqsamplesizedata_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnaseqsamplesizedata/bioconductor-rnaseqsamplesizedata_1.16.0_src_all.tar.gz" ) MD5="b5807095357790233a3b0901e093d4e2" diff --git a/recipes/bioconductor-rnbeads.hg19/meta.yaml b/recipes/bioconductor-rnbeads.hg19/meta.yaml index 5531a68efe66a..0d36c9b2e62d9 100644 --- a/recipes/bioconductor-rnbeads.hg19/meta.yaml +++ b/recipes/bioconductor-rnbeads.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 49124fe698070ac641edccd84738a403 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnbeads.hg19/post-link.sh b/recipes/bioconductor-rnbeads.hg19/post-link.sh index 63f038624a4bf..9c145d79fa5f3 100644 --- a/recipes/bioconductor-rnbeads.hg19/post-link.sh +++ b/recipes/bioconductor-rnbeads.hg19/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RnBeads.hg19_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/RnBeads.hg19_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnbeads.hg19/bioconductor-rnbeads.hg19_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnbeads.hg19/bioconductor-rnbeads.hg19_1.16.0_src_all.tar.gz" ) MD5="49124fe698070ac641edccd84738a403" diff --git a/recipes/bioconductor-rnbeads.hg38/meta.yaml b/recipes/bioconductor-rnbeads.hg38/meta.yaml index 49de3a4ed0e79..fed329e23f5d6 100644 --- a/recipes/bioconductor-rnbeads.hg38/meta.yaml +++ b/recipes/bioconductor-rnbeads.hg38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1f69ca76421c139e33d51cd6257d61ec build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnbeads.hg38/post-link.sh b/recipes/bioconductor-rnbeads.hg38/post-link.sh index feff49ce74fab..d786bf278e814 100644 --- a/recipes/bioconductor-rnbeads.hg38/post-link.sh +++ b/recipes/bioconductor-rnbeads.hg38/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RnBeads.hg38_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/RnBeads.hg38_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnbeads.hg38/bioconductor-rnbeads.hg38_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnbeads.hg38/bioconductor-rnbeads.hg38_1.16.0_src_all.tar.gz" ) MD5="1f69ca76421c139e33d51cd6257d61ec" diff --git a/recipes/bioconductor-rnbeads.mm10/meta.yaml b/recipes/bioconductor-rnbeads.mm10/meta.yaml index fb885f5e188b7..7043a63365d1c 100644 --- a/recipes/bioconductor-rnbeads.mm10/meta.yaml +++ b/recipes/bioconductor-rnbeads.mm10/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bc59c0c33a16831ea8b9b55e17a9b3dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnbeads.mm10/post-link.sh b/recipes/bioconductor-rnbeads.mm10/post-link.sh index 6c533dc6626d4..8f98fd251e654 100644 --- a/recipes/bioconductor-rnbeads.mm10/post-link.sh +++ b/recipes/bioconductor-rnbeads.mm10/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RnBeads.mm10_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/RnBeads.mm10_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnbeads.mm10/bioconductor-rnbeads.mm10_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnbeads.mm10/bioconductor-rnbeads.mm10_1.16.0_src_all.tar.gz" ) MD5="bc59c0c33a16831ea8b9b55e17a9b3dc" diff --git a/recipes/bioconductor-rnbeads.mm9/meta.yaml b/recipes/bioconductor-rnbeads.mm9/meta.yaml index 10d1b0f01d35b..1dcb724cbc07a 100644 --- a/recipes/bioconductor-rnbeads.mm9/meta.yaml +++ b/recipes/bioconductor-rnbeads.mm9/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bf09e958b0bbf362715e29f29f1f9089 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnbeads.mm9/post-link.sh b/recipes/bioconductor-rnbeads.mm9/post-link.sh index 3c2fe052fa492..5e056fcae1d13 100644 --- a/recipes/bioconductor-rnbeads.mm9/post-link.sh +++ b/recipes/bioconductor-rnbeads.mm9/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RnBeads.mm9_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/RnBeads.mm9_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnbeads.mm9/bioconductor-rnbeads.mm9_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnbeads.mm9/bioconductor-rnbeads.mm9_1.16.0_src_all.tar.gz" ) MD5="bf09e958b0bbf362715e29f29f1f9089" diff --git a/recipes/bioconductor-rnbeads.rn5/meta.yaml b/recipes/bioconductor-rnbeads.rn5/meta.yaml index 442240fd51523..7a35aa1e8f88c 100644 --- a/recipes/bioconductor-rnbeads.rn5/meta.yaml +++ b/recipes/bioconductor-rnbeads.rn5/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1fa4dc52e604abd00c95bf29702eb9f2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnbeads.rn5/post-link.sh b/recipes/bioconductor-rnbeads.rn5/post-link.sh index 89a610bcc5fd6..fa01cf25f9808 100644 --- a/recipes/bioconductor-rnbeads.rn5/post-link.sh +++ b/recipes/bioconductor-rnbeads.rn5/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RnBeads.rn5_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/RnBeads.rn5_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rnbeads.rn5/bioconductor-rnbeads.rn5_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rnbeads.rn5/bioconductor-rnbeads.rn5_1.16.0_src_all.tar.gz" ) MD5="1fa4dc52e604abd00c95bf29702eb9f2" diff --git a/recipes/bioconductor-rnbeads/meta.yaml b/recipes/bioconductor-rnbeads/meta.yaml index 2cc73ac9916fb..47925d931ede8 100644 --- a/recipes/bioconductor-rnbeads/meta.yaml +++ b/recipes/bioconductor-rnbeads/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bbf902d71dbc1ff3140b69786eec53a8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnits/meta.yaml b/recipes/bioconductor-rnits/meta.yaml index 1d1ccf2114879..eae5454b591a4 100644 --- a/recipes/bioconductor-rnits/meta.yaml +++ b/recipes/bioconductor-rnits/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f2dc9da60be5b567aa10ee868f420f76 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnu34.db/meta.yaml b/recipes/bioconductor-rnu34.db/meta.yaml index 279c3d11627db..df390badd340e 100644 --- a/recipes/bioconductor-rnu34.db/meta.yaml +++ b/recipes/bioconductor-rnu34.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a95920bb41a2f78da82f419b245ad1a9 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnu34cdf/meta.yaml b/recipes/bioconductor-rnu34cdf/meta.yaml index 25931a8ed44a7..6fb67e34879fd 100644 --- a/recipes/bioconductor-rnu34cdf/meta.yaml +++ b/recipes/bioconductor-rnu34cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0f2564fc6ac89de4d779faf253f23ce3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rnu34probe/meta.yaml b/recipes/bioconductor-rnu34probe/meta.yaml index 9a63669cf7c47..13c7d266e2ec0 100644 --- a/recipes/bioconductor-rnu34probe/meta.yaml +++ b/recipes/bioconductor-rnu34probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c5ef9793a437f2bf990f6e84d31da0de build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-roar/meta.yaml b/recipes/bioconductor-roar/meta.yaml index 770c6f0069185..86588259855d2 100644 --- a/recipes/bioconductor-roar/meta.yaml +++ b/recipes/bioconductor-roar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 92ef146820e62dc15b03d47103b7b842 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-roberts2005annotation.db/meta.yaml b/recipes/bioconductor-roberts2005annotation.db/meta.yaml index 1417c28073d30..9aa0e86ec267b 100644 --- a/recipes/bioconductor-roberts2005annotation.db/meta.yaml +++ b/recipes/bioconductor-roberts2005annotation.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fb28aaf1a1e0c81cf936badc674b754a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-roc/meta.yaml b/recipes/bioconductor-roc/meta.yaml index b6fb58192083b..fe042405a2b10 100644 --- a/recipes/bioconductor-roc/meta.yaml +++ b/recipes/bioconductor-roc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e8b0381abdb97b4e05462c5aa9cb1b40 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-roleswitch/meta.yaml b/recipes/bioconductor-roleswitch/meta.yaml index 0c2027001e2d8..fcae1de4f44b6 100644 --- a/recipes/bioconductor-roleswitch/meta.yaml +++ b/recipes/bioconductor-roleswitch/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e5b8341739aaa57153f976065382980c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rols/meta.yaml b/recipes/bioconductor-rols/meta.yaml index 9f083d4be2ef9..78568c8b215ff 100644 --- a/recipes/bioconductor-rols/meta.yaml +++ b/recipes/bioconductor-rols/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 43920a7e240b734d4e4d16375cdae87f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rontotools/meta.yaml b/recipes/bioconductor-rontotools/meta.yaml index b19fc97ee9b39..4ca09898fc1bc 100644 --- a/recipes/bioconductor-rontotools/meta.yaml +++ b/recipes/bioconductor-rontotools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fbd173389451d2dba4d9cab0d6d0aa43 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ropls/meta.yaml b/recipes/bioconductor-ropls/meta.yaml index 8d13824ffc080..600e1b2fa96ae 100644 --- a/recipes/bioconductor-ropls/meta.yaml +++ b/recipes/bioconductor-ropls/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6f400551a42309cdab9516e3a3699310 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rots/meta.yaml b/recipes/bioconductor-rots/meta.yaml index 9adcb4eaa3d11..7b59fe2b58db2 100644 --- a/recipes/bioconductor-rots/meta.yaml +++ b/recipes/bioconductor-rots/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 855cd21624ca96a2d869308321c15455 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rpa/meta.yaml b/recipes/bioconductor-rpa/meta.yaml index ab6210c9cfe01..085f58c94518a 100644 --- a/recipes/bioconductor-rpa/meta.yaml +++ b/recipes/bioconductor-rpa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cdf4f68b4db2f44027ab8a2b64cd6fbc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rprotobuflib/meta.yaml b/recipes/bioconductor-rprotobuflib/meta.yaml index b776b0fe1551b..368003874d018 100644 --- a/recipes/bioconductor-rprotobuflib/meta.yaml +++ b/recipes/bioconductor-rprotobuflib/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 051dff736a8a9472967af4ab7592eb75 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rpsixml/meta.yaml b/recipes/bioconductor-rpsixml/meta.yaml index 6079a0dc8cdac..c3b19dc151546 100644 --- a/recipes/bioconductor-rpsixml/meta.yaml +++ b/recipes/bioconductor-rpsixml/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d1e54d5af83439601aa072ed9cd9813a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rpx/meta.yaml b/recipes/bioconductor-rpx/meta.yaml index 5e29d59f2ddf4..f82be7f6007f0 100644 --- a/recipes/bioconductor-rpx/meta.yaml +++ b/recipes/bioconductor-rpx/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 97d1e71c49b3cd2afeea2dd82b6cdfb8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rqc/meta.yaml b/recipes/bioconductor-rqc/meta.yaml index 343c1369f9b61..8c98cdb866335 100644 --- a/recipes/bioconductor-rqc/meta.yaml +++ b/recipes/bioconductor-rqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8179a6fd97cb7e253b3e9b0b4930213c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rqt/meta.yaml b/recipes/bioconductor-rqt/meta.yaml index 089e8a79be38e..1aba4b1b387cb 100644 --- a/recipes/bioconductor-rqt/meta.yaml +++ b/recipes/bioconductor-rqt/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: be2f07e3861cacc72175b7211849ba08 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rqubic/meta.yaml b/recipes/bioconductor-rqubic/meta.yaml index 3ae0c93775eb9..827be756d3fcc 100644 --- a/recipes/bioconductor-rqubic/meta.yaml +++ b/recipes/bioconductor-rqubic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d76444400bdf99e353f4ff3ef6ce3597 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rrbsdata/meta.yaml b/recipes/bioconductor-rrbsdata/meta.yaml index 3b041debc526c..961ac4aa75891 100644 --- a/recipes/bioconductor-rrbsdata/meta.yaml +++ b/recipes/bioconductor-rrbsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 53ac77ef644a80ac96da8a6b8ff1ae80 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rrbsdata/post-link.sh b/recipes/bioconductor-rrbsdata/post-link.sh index 7e5229c7549b0..508aa159557f5 100644 --- a/recipes/bioconductor-rrbsdata/post-link.sh +++ b/recipes/bioconductor-rrbsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RRBSdata_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/RRBSdata_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rrbsdata/bioconductor-rrbsdata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rrbsdata/bioconductor-rrbsdata_1.4.0_src_all.tar.gz" ) MD5="53ac77ef644a80ac96da8a6b8ff1ae80" diff --git a/recipes/bioconductor-rrdp/meta.yaml b/recipes/bioconductor-rrdp/meta.yaml index bd8cf3399f553..e803fd202dbb3 100644 --- a/recipes/bioconductor-rrdp/meta.yaml +++ b/recipes/bioconductor-rrdp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 943c2acf0f62f3132d9e6a3f4c0301e5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -23,11 +23,9 @@ requirements: host: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - r-base - - openjdk 8.* run: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - r-base - - openjdk 8.* test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-rrdpdata/meta.yaml b/recipes/bioconductor-rrdpdata/meta.yaml index bfc5bcc09404c..995e7bfef6ce3 100644 --- a/recipes/bioconductor-rrdpdata/meta.yaml +++ b/recipes/bioconductor-rrdpdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c86d4a780bd0a4c15addf5654bda6fc9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rrdpdata/post-link.sh b/recipes/bioconductor-rrdpdata/post-link.sh index 1569c0f9b34d6..1639565930c8f 100644 --- a/recipes/bioconductor-rrdpdata/post-link.sh +++ b/recipes/bioconductor-rrdpdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/rRDPData_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/rRDPData_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rrdpdata/bioconductor-rrdpdata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rrdpdata/bioconductor-rrdpdata_1.4.0_src_all.tar.gz" ) MD5="c86d4a780bd0a4c15addf5654bda6fc9" diff --git a/recipes/bioconductor-rrho/meta.yaml b/recipes/bioconductor-rrho/meta.yaml index 7b7cf2a5bccd2..5cba50415e378 100644 --- a/recipes/bioconductor-rrho/meta.yaml +++ b/recipes/bioconductor-rrho/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7da61e5969e445ef71938c8e1f627276 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rsamtools/meta.yaml b/recipes/bioconductor-rsamtools/meta.yaml index f8551b4ecf249..ea7c316969237 100644 --- a/recipes/bioconductor-rsamtools/meta.yaml +++ b/recipes/bioconductor-rsamtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e6bda2a7bdb2250ec991dd2966c31f3b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rsbml/meta.yaml b/recipes/bioconductor-rsbml/meta.yaml index de44afd1bc1ac..7e1d4d3319ef1 100644 --- a/recipes/bioconductor-rsbml/meta.yaml +++ b/recipes/bioconductor-rsbml/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8a1462618926a032d37ad539386304bf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,12 +22,10 @@ requirements: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-graph >=1.62.0,<1.63.0' - r-base - - libsbml 5.10.2 run: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-graph >=1.62.0,<1.63.0' - r-base - - libsbml 5.10.2 build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-rscudo/meta.yaml b/recipes/bioconductor-rscudo/meta.yaml index 25d2f5ebd0b05..b6d8ae46a069a 100644 --- a/recipes/bioconductor-rscudo/meta.yaml +++ b/recipes/bioconductor-rscudo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 12e0c91e5d423a7ec438ac459ded02b3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rseqan/meta.yaml b/recipes/bioconductor-rseqan/meta.yaml index b7310fb356221..a8d963a4ffe26 100644 --- a/recipes/bioconductor-rseqan/meta.yaml +++ b/recipes/bioconductor-rseqan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a758f8f9fd49a40baab1a0e875a0b33f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rsffreader/meta.yaml b/recipes/bioconductor-rsffreader/meta.yaml index 6b0c4770283a7..c1cc63b0c8cd5 100644 --- a/recipes/bioconductor-rsffreader/meta.yaml +++ b/recipes/bioconductor-rsffreader/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3358439570e653a0993554a493c46025 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rsubread/meta.yaml b/recipes/bioconductor-rsubread/meta.yaml index f6f3ae1165307..c0b26a667b340 100644 --- a/recipes/bioconductor-rsubread/meta.yaml +++ b/recipes/bioconductor-rsubread/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.34.0" %} +{% set version = "1.34.6" %} {% set name = "Rsubread" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 76783b46d5fabf661ac19f853fedec57 + md5: 0150285fa8b22e9a05d7d706e6d23fc4 build: number: 0 rpaths: diff --git a/recipes/bioconductor-rsvsim/meta.yaml b/recipes/bioconductor-rsvsim/meta.yaml index feb0d3b9fd43c..336c496e4c42d 100644 --- a/recipes/bioconductor-rsvsim/meta.yaml +++ b/recipes/bioconductor-rsvsim/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6e49fea17a802712a961c19759ad5426 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rta10probeset.db/meta.yaml b/recipes/bioconductor-rta10probeset.db/meta.yaml index c000e8033b13d..858ffe3913048 100644 --- a/recipes/bioconductor-rta10probeset.db/meta.yaml +++ b/recipes/bioconductor-rta10probeset.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 62d35f5ac75a51c2ac91730fd681d031 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rta10transcriptcluster.db/meta.yaml b/recipes/bioconductor-rta10transcriptcluster.db/meta.yaml index 7b8e27bd58c42..9a651924784c7 100644 --- a/recipes/bioconductor-rta10transcriptcluster.db/meta.yaml +++ b/recipes/bioconductor-rta10transcriptcluster.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c6a854395aec7296ffb7d98534b112f7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtandem/meta.yaml b/recipes/bioconductor-rtandem/meta.yaml index 3b51d2a0839b5..fa4a0e4813e14 100644 --- a/recipes/bioconductor-rtandem/meta.yaml +++ b/recipes/bioconductor-rtandem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 44208a1e3fa4519631026eaaca1c6f06 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -24,13 +24,11 @@ requirements: - 'r-data.table >=1.8.8' - r-rcpp - r-xml - - expat run: - r-base - 'r-data.table >=1.8.8' - r-rcpp - r-xml - - expat build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-rtca/meta.yaml b/recipes/bioconductor-rtca/meta.yaml index dbb5b884c9ddb..6280ea19ed494 100644 --- a/recipes/bioconductor-rtca/meta.yaml +++ b/recipes/bioconductor-rtca/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fd9e6aa7833069a60b2bfeddf8071d19 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.clinical/meta.yaml b/recipes/bioconductor-rtcga.clinical/meta.yaml index 6666c319f49cd..63dae33606a3e 100644 --- a/recipes/bioconductor-rtcga.clinical/meta.yaml +++ b/recipes/bioconductor-rtcga.clinical/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d65d00fe077a509138e6234d9195cd3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.clinical/post-link.sh b/recipes/bioconductor-rtcga.clinical/post-link.sh index 0ef2e456a01ff..5a7e2d4098894 100644 --- a/recipes/bioconductor-rtcga.clinical/post-link.sh +++ b/recipes/bioconductor-rtcga.clinical/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.clinical_20151101.14.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.clinical_20151101.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.clinical/bioconductor-rtcga.clinical_20151101.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.clinical/bioconductor-rtcga.clinical_20151101.14.0_src_all.tar.gz" ) MD5="7d65d00fe077a509138e6234d9195cd3" diff --git a/recipes/bioconductor-rtcga.cnv/meta.yaml b/recipes/bioconductor-rtcga.cnv/meta.yaml index 6b05b9a0aa904..ee93c410c7b3c 100644 --- a/recipes/bioconductor-rtcga.cnv/meta.yaml +++ b/recipes/bioconductor-rtcga.cnv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 45de80778e2b1ff9334485bf4b86d268 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.cnv/post-link.sh b/recipes/bioconductor-rtcga.cnv/post-link.sh index 7f73c514104ae..e95aa5d8ee573 100644 --- a/recipes/bioconductor-rtcga.cnv/post-link.sh +++ b/recipes/bioconductor-rtcga.cnv/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.CNV_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.CNV_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.cnv/bioconductor-rtcga.cnv_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.cnv/bioconductor-rtcga.cnv_1.12.0_src_all.tar.gz" ) MD5="45de80778e2b1ff9334485bf4b86d268" diff --git a/recipes/bioconductor-rtcga.methylation/meta.yaml b/recipes/bioconductor-rtcga.methylation/meta.yaml index f521e3dcf1e64..e0b8cfc92fe6c 100644 --- a/recipes/bioconductor-rtcga.methylation/meta.yaml +++ b/recipes/bioconductor-rtcga.methylation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 39f7bae6e164ffe53315ddbf7ed3b168 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.methylation/post-link.sh b/recipes/bioconductor-rtcga.methylation/post-link.sh index 1bf2cf3231a76..0162ee0c4b4df 100644 --- a/recipes/bioconductor-rtcga.methylation/post-link.sh +++ b/recipes/bioconductor-rtcga.methylation/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.methylation_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.methylation_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.methylation/bioconductor-rtcga.methylation_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.methylation/bioconductor-rtcga.methylation_1.12.0_src_all.tar.gz" ) MD5="39f7bae6e164ffe53315ddbf7ed3b168" diff --git a/recipes/bioconductor-rtcga.mirnaseq/meta.yaml b/recipes/bioconductor-rtcga.mirnaseq/meta.yaml index 1e341188a8fb2..b9491f5e3343c 100644 --- a/recipes/bioconductor-rtcga.mirnaseq/meta.yaml +++ b/recipes/bioconductor-rtcga.mirnaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8b0c9b1c5fb35170ec999dc1875194a9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.mirnaseq/post-link.sh b/recipes/bioconductor-rtcga.mirnaseq/post-link.sh index 4d1de560e53a6..fc30311f81031 100644 --- a/recipes/bioconductor-rtcga.mirnaseq/post-link.sh +++ b/recipes/bioconductor-rtcga.mirnaseq/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.miRNASeq_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.miRNASeq_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.mirnaseq/bioconductor-rtcga.mirnaseq_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.mirnaseq/bioconductor-rtcga.mirnaseq_1.12.0_src_all.tar.gz" ) MD5="8b0c9b1c5fb35170ec999dc1875194a9" diff --git a/recipes/bioconductor-rtcga.mrna/meta.yaml b/recipes/bioconductor-rtcga.mrna/meta.yaml index 6c9496bfff40c..6adbf0ba9deed 100644 --- a/recipes/bioconductor-rtcga.mrna/meta.yaml +++ b/recipes/bioconductor-rtcga.mrna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 87f5ceb10640bc62bf465e6d0137fd0e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.mrna/post-link.sh b/recipes/bioconductor-rtcga.mrna/post-link.sh index ec12aea5260ec..66e30b1564f30 100644 --- a/recipes/bioconductor-rtcga.mrna/post-link.sh +++ b/recipes/bioconductor-rtcga.mrna/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.mRNA_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.mRNA_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.mrna/bioconductor-rtcga.mrna_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.mrna/bioconductor-rtcga.mrna_1.12.0_src_all.tar.gz" ) MD5="87f5ceb10640bc62bf465e6d0137fd0e" diff --git a/recipes/bioconductor-rtcga.mutations/meta.yaml b/recipes/bioconductor-rtcga.mutations/meta.yaml index 0c4f6f021a702..948e7d4826748 100644 --- a/recipes/bioconductor-rtcga.mutations/meta.yaml +++ b/recipes/bioconductor-rtcga.mutations/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cf3d79748430e6c9afc08dc1d28aa8a9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.mutations/post-link.sh b/recipes/bioconductor-rtcga.mutations/post-link.sh index 81b4eefb93d4e..7094d2f314ef3 100644 --- a/recipes/bioconductor-rtcga.mutations/post-link.sh +++ b/recipes/bioconductor-rtcga.mutations/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.mutations_20151101.14.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.mutations_20151101.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.mutations/bioconductor-rtcga.mutations_20151101.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.mutations/bioconductor-rtcga.mutations_20151101.14.0_src_all.tar.gz" ) MD5="cf3d79748430e6c9afc08dc1d28aa8a9" diff --git a/recipes/bioconductor-rtcga.pancan12/meta.yaml b/recipes/bioconductor-rtcga.pancan12/meta.yaml index a256c85c8ea54..a57398307f488 100644 --- a/recipes/bioconductor-rtcga.pancan12/meta.yaml +++ b/recipes/bioconductor-rtcga.pancan12/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d245828f779b7cf0ca7cf3263d700b15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.pancan12/post-link.sh b/recipes/bioconductor-rtcga.pancan12/post-link.sh index bd77c1ca30e2a..2791816144b18 100644 --- a/recipes/bioconductor-rtcga.pancan12/post-link.sh +++ b/recipes/bioconductor-rtcga.pancan12/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.PANCAN12_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.PANCAN12_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.pancan12/bioconductor-rtcga.pancan12_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.pancan12/bioconductor-rtcga.pancan12_1.12.0_src_all.tar.gz" ) MD5="d245828f779b7cf0ca7cf3263d700b15" diff --git a/recipes/bioconductor-rtcga.rnaseq/meta.yaml b/recipes/bioconductor-rtcga.rnaseq/meta.yaml index eb22adb0c0458..2c3df44bd9a8e 100644 --- a/recipes/bioconductor-rtcga.rnaseq/meta.yaml +++ b/recipes/bioconductor-rtcga.rnaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2a388fc3928cbbd967a5a7a742574a16 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.rnaseq/post-link.sh b/recipes/bioconductor-rtcga.rnaseq/post-link.sh index bc2f3c52a176e..79f9c9051faaf 100644 --- a/recipes/bioconductor-rtcga.rnaseq/post-link.sh +++ b/recipes/bioconductor-rtcga.rnaseq/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.rnaseq_20151101.14.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.rnaseq_20151101.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.rnaseq/bioconductor-rtcga.rnaseq_20151101.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.rnaseq/bioconductor-rtcga.rnaseq_20151101.14.0_src_all.tar.gz" ) MD5="2a388fc3928cbbd967a5a7a742574a16" diff --git a/recipes/bioconductor-rtcga.rppa/meta.yaml b/recipes/bioconductor-rtcga.rppa/meta.yaml index 2d405b1ea76b9..01f92747fd6bd 100644 --- a/recipes/bioconductor-rtcga.rppa/meta.yaml +++ b/recipes/bioconductor-rtcga.rppa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0e74a091c00ddaabd10c8ccab0e38248 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcga.rppa/post-link.sh b/recipes/bioconductor-rtcga.rppa/post-link.sh index 110dc6131a189..52ece890b7751 100644 --- a/recipes/bioconductor-rtcga.rppa/post-link.sh +++ b/recipes/bioconductor-rtcga.rppa/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RTCGA.RPPA_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/RTCGA.RPPA_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-rtcga.rppa/bioconductor-rtcga.rppa_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-rtcga.rppa/bioconductor-rtcga.rppa_1.12.0_src_all.tar.gz" ) MD5="0e74a091c00ddaabd10c8ccab0e38248" diff --git a/recipes/bioconductor-rtcga/meta.yaml b/recipes/bioconductor-rtcga/meta.yaml index 1855cb7a47d38..2dae10b9fffc9 100644 --- a/recipes/bioconductor-rtcga/meta.yaml +++ b/recipes/bioconductor-rtcga/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 197a319790d242d89d7c2a70eec3f209 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtcgatoolbox/meta.yaml b/recipes/bioconductor-rtcgatoolbox/meta.yaml index 152e1eda3847a..bfaebd22a89e1 100644 --- a/recipes/bioconductor-rtcgatoolbox/meta.yaml +++ b/recipes/bioconductor-rtcgatoolbox/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 012e8a4cbfb4a00a4828f81d516adf97 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtn/meta.yaml b/recipes/bioconductor-rtn/meta.yaml index 8c80073a41b79..2ab4107e05b15 100644 --- a/recipes/bioconductor-rtn/meta.yaml +++ b/recipes/bioconductor-rtn/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.8.0" %} +{% set version = "2.8.1" %} {% set name = "RTN" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: ea763ba5e52bcf40fa29f0fd40cdc470 + md5: 69e33a10d3404727a55d26a7f04808e3 build: number: 0 rpaths: diff --git a/recipes/bioconductor-rtnduals/meta.yaml b/recipes/bioconductor-rtnduals/meta.yaml index a88e608b39a8a..a6a45154df318 100644 --- a/recipes/bioconductor-rtnduals/meta.yaml +++ b/recipes/bioconductor-rtnduals/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} {% set name = "RTNduals" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: ddab05a413891707fc1277364d51f842 + md5: 95e3fc614fa1fa4521640041e48d9736 build: number: 0 rpaths: diff --git a/recipes/bioconductor-rtnsurvival/meta.yaml b/recipes/bioconductor-rtnsurvival/meta.yaml index e033598bea54f..d32265afb3050 100644 --- a/recipes/bioconductor-rtnsurvival/meta.yaml +++ b/recipes/bioconductor-rtnsurvival/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} {% set name = "RTNsurvival" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: d39d0d714083d758d2e1391e6f22bac8 + md5: f6abd01a211e0abcf01961e87959f187 build: number: 0 rpaths: diff --git a/recipes/bioconductor-rtopper/meta.yaml b/recipes/bioconductor-rtopper/meta.yaml index 1f955e67b8595..48c20d3176a01 100644 --- a/recipes/bioconductor-rtopper/meta.yaml +++ b/recipes/bioconductor-rtopper/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e1c2eb8d873ba6524793846bae561bca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtracklayer/meta.yaml b/recipes/bioconductor-rtracklayer/meta.yaml index 394e5b3619b5c..4c95fe8c87713 100644 --- a/recipes/bioconductor-rtracklayer/meta.yaml +++ b/recipes/bioconductor-rtracklayer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' sha256: 1aad755140d98eeece16967d97d3dfece90c119e674bcdfa2c4ecabfb4cb640d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtreemix/meta.yaml b/recipes/bioconductor-rtreemix/meta.yaml index ff0aab65ee8a8..6ef24492c69a6 100644 --- a/recipes/bioconductor-rtreemix/meta.yaml +++ b/recipes/bioconductor-rtreemix/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8fd53d3b038779d64d0c79e458073794 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtrm/meta.yaml b/recipes/bioconductor-rtrm/meta.yaml index b8b6cfcb16e59..0419561a8ed1c 100644 --- a/recipes/bioconductor-rtrm/meta.yaml +++ b/recipes/bioconductor-rtrm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e58e2df0a7aa36fef947ec613787e6ff build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtrmui/meta.yaml b/recipes/bioconductor-rtrmui/meta.yaml index 18c2dd602a21e..ea7bf7621153a 100644 --- a/recipes/bioconductor-rtrmui/meta.yaml +++ b/recipes/bioconductor-rtrmui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b68c48722a81e8e7538326a8d620bdb0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtu34.db/meta.yaml b/recipes/bioconductor-rtu34.db/meta.yaml index c8fa9a229e8f6..8f0eeda51e564 100644 --- a/recipes/bioconductor-rtu34.db/meta.yaml +++ b/recipes/bioconductor-rtu34.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c598b5caedc421e104e2e541f396d213 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtu34cdf/meta.yaml b/recipes/bioconductor-rtu34cdf/meta.yaml index d0d244927500c..e5fb346ba3883 100644 --- a/recipes/bioconductor-rtu34cdf/meta.yaml +++ b/recipes/bioconductor-rtu34cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 317abfcca319d01eb14f16efa6d91da1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rtu34probe/meta.yaml b/recipes/bioconductor-rtu34probe/meta.yaml index 361831409cf57..c745856599113 100644 --- a/recipes/bioconductor-rtu34probe/meta.yaml +++ b/recipes/bioconductor-rtu34probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1778d857a61bf181b80b9fcf46ebd2c3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-runibic/meta.yaml b/recipes/bioconductor-runibic/meta.yaml index 9cb3bdf66036b..331686c8154b9 100644 --- a/recipes/bioconductor-runibic/meta.yaml +++ b/recipes/bioconductor-runibic/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c8f01e6c053657c2965534977c011fd3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ruvcorr/meta.yaml b/recipes/bioconductor-ruvcorr/meta.yaml index a779e23c272cb..1e4fa19251d6a 100644 --- a/recipes/bioconductor-ruvcorr/meta.yaml +++ b/recipes/bioconductor-ruvcorr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f6531125e9cdbe8b059809cca024282f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ruvnormalize/meta.yaml b/recipes/bioconductor-ruvnormalize/meta.yaml index 1ec93a0381276..d4313c3329b9c 100644 --- a/recipes/bioconductor-ruvnormalize/meta.yaml +++ b/recipes/bioconductor-ruvnormalize/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6dbb367a168bc1afdd02500678511afe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ruvnormalizedata/meta.yaml b/recipes/bioconductor-ruvnormalizedata/meta.yaml index bc8c0a7cc63a7..ce86db40f7a50 100644 --- a/recipes/bioconductor-ruvnormalizedata/meta.yaml +++ b/recipes/bioconductor-ruvnormalizedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cf46437c54508c46e43c5679bdedf2b0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ruvnormalizedata/post-link.sh b/recipes/bioconductor-ruvnormalizedata/post-link.sh index eed2d16d5a9f7..8ba188999e09d 100644 --- a/recipes/bioconductor-ruvnormalizedata/post-link.sh +++ b/recipes/bioconductor-ruvnormalizedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/RUVnormalizeData_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/RUVnormalizeData_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-ruvnormalizedata/bioconductor-ruvnormalizedata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-ruvnormalizedata/bioconductor-ruvnormalizedata_1.4.0_src_all.tar.gz" ) MD5="cf46437c54508c46e43c5679bdedf2b0" diff --git a/recipes/bioconductor-ruvseq/meta.yaml b/recipes/bioconductor-ruvseq/meta.yaml index a0e75e548e844..ea7d4f096f635 100644 --- a/recipes/bioconductor-ruvseq/meta.yaml +++ b/recipes/bioconductor-ruvseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bacf3b82eb0dfaf71deedde3f134197e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rvs/meta.yaml b/recipes/bioconductor-rvs/meta.yaml index 05d3ecb510de9..8e7fc3e04d906 100644 --- a/recipes/bioconductor-rvs/meta.yaml +++ b/recipes/bioconductor-rvs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f291c45d810295d1c0807c8c15b04fab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rwgcod.db/meta.yaml b/recipes/bioconductor-rwgcod.db/meta.yaml index 873ce92e949b5..21d8a46a748a9 100644 --- a/recipes/bioconductor-rwgcod.db/meta.yaml +++ b/recipes/bioconductor-rwgcod.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c8d2fa81b6f03c4ee629a0883431e5fd build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rwikipathways/meta.yaml b/recipes/bioconductor-rwikipathways/meta.yaml index 9a0306f03ae5e..2f03fd3672ced 100644 --- a/recipes/bioconductor-rwikipathways/meta.yaml +++ b/recipes/bioconductor-rwikipathways/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bab46f1a1f44222d92153de25d80308f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-s4vectors/meta.yaml b/recipes/bioconductor-s4vectors/meta.yaml index 5826c1a1e47f8..4e2314cd84daa 100644 --- a/recipes/bioconductor-s4vectors/meta.yaml +++ b/recipes/bioconductor-s4vectors/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 95ceabaa2d81b1d5e3fdc1238789210e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-safe/meta.yaml b/recipes/bioconductor-safe/meta.yaml index 2529efb2fa29b..aeb295306ba71 100644 --- a/recipes/bioconductor-safe/meta.yaml +++ b/recipes/bioconductor-safe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 25aa7f520ac63c8278502724744081a5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sagenhaft/meta.yaml b/recipes/bioconductor-sagenhaft/meta.yaml index 062008d79ecca..3eaf71ac37e48 100644 --- a/recipes/bioconductor-sagenhaft/meta.yaml +++ b/recipes/bioconductor-sagenhaft/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c7bc38a2be0fbefcaa1574b9eabc4e37 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sagx/meta.yaml b/recipes/bioconductor-sagx/meta.yaml index da5b8505a9cdc..1a193efe66539 100644 --- a/recipes/bioconductor-sagx/meta.yaml +++ b/recipes/bioconductor-sagx/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 492ec5dae06e1ee6efd1727720220d18 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-samexplorer/meta.yaml b/recipes/bioconductor-samexplorer/meta.yaml index 7a89e5f179ab2..3ff5c80c51b7d 100644 --- a/recipes/bioconductor-samexplorer/meta.yaml +++ b/recipes/bioconductor-samexplorer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b474822f7c070af3860e1d6099963b91 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sampleclassifier/meta.yaml b/recipes/bioconductor-sampleclassifier/meta.yaml index 0be3a3dd64b68..5b00c8c4131ca 100644 --- a/recipes/bioconductor-sampleclassifier/meta.yaml +++ b/recipes/bioconductor-sampleclassifier/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 62a530a8913a194cd3d1ef7f597c0c30 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sampleclassifierdata/meta.yaml b/recipes/bioconductor-sampleclassifierdata/meta.yaml index 26aacb0a666f3..f5d0975fb5c24 100644 --- a/recipes/bioconductor-sampleclassifierdata/meta.yaml +++ b/recipes/bioconductor-sampleclassifierdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6fcc9c1340d095ffb07ab865540dbe72 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sampleclassifierdata/post-link.sh b/recipes/bioconductor-sampleclassifierdata/post-link.sh index b1822e1c104d7..fc6f49eb114d3 100644 --- a/recipes/bioconductor-sampleclassifierdata/post-link.sh +++ b/recipes/bioconductor-sampleclassifierdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/sampleClassifierData_1.8.0.tar.gz" "https://bioarchive.galaxyproject.org/sampleClassifierData_1.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-sampleclassifierdata/bioconductor-sampleclassifierdata_1.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-sampleclassifierdata/bioconductor-sampleclassifierdata_1.8.0_src_all.tar.gz" ) MD5="6fcc9c1340d095ffb07ab865540dbe72" diff --git a/recipes/bioconductor-samspectral/meta.yaml b/recipes/bioconductor-samspectral/meta.yaml index 3ebbf7205f2e5..b66ecfe9efb25 100644 --- a/recipes/bioconductor-samspectral/meta.yaml +++ b/recipes/bioconductor-samspectral/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 57b8e4af80ec16503f640076e448df6a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sangerseqr/meta.yaml b/recipes/bioconductor-sangerseqr/meta.yaml index f73180e8e1e4b..947738fce070e 100644 --- a/recipes/bioconductor-sangerseqr/meta.yaml +++ b/recipes/bioconductor-sangerseqr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 31264d633b121298f642ed7e79e366d1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-santa/meta.yaml b/recipes/bioconductor-santa/meta.yaml index 2801b5aaf5ffe..40df237b75ac7 100644 --- a/recipes/bioconductor-santa/meta.yaml +++ b/recipes/bioconductor-santa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6ba9ce317557ad49c1147be11dc9024b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sapfinder/meta.yaml b/recipes/bioconductor-sapfinder/meta.yaml index b3af2d38bb153..2a9f2f2c72110 100644 --- a/recipes/bioconductor-sapfinder/meta.yaml +++ b/recipes/bioconductor-sapfinder/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6d6a661040edbe9d0adb12390988e71e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-saureuscdf/meta.yaml b/recipes/bioconductor-saureuscdf/meta.yaml index 1d193eb6bdb7c..b344878bc9781 100644 --- a/recipes/bioconductor-saureuscdf/meta.yaml +++ b/recipes/bioconductor-saureuscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d01883e4c3dd99f32012e6dbab8cdb8b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-saureusprobe/meta.yaml b/recipes/bioconductor-saureusprobe/meta.yaml index 743e9badd7aed..89b524875185c 100644 --- a/recipes/bioconductor-saureusprobe/meta.yaml +++ b/recipes/bioconductor-saureusprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eb4e91b10a536cbde4ecc08951ddf4d3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-savr/meta.yaml b/recipes/bioconductor-savr/meta.yaml index 6806fc07225bf..a753e8719fe4e 100644 --- a/recipes/bioconductor-savr/meta.yaml +++ b/recipes/bioconductor-savr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7baac100f53958464842eb9cd31d4759 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sbmlr/meta.yaml b/recipes/bioconductor-sbmlr/meta.yaml index 700e3ffc8556e..573deccba11e7 100644 --- a/recipes/bioconductor-sbmlr/meta.yaml +++ b/recipes/bioconductor-sbmlr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ff571f4e83243d39124016025836e7a3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sc3/meta.yaml b/recipes/bioconductor-sc3/meta.yaml index 1979651e0f840..53bcef2fbc91e 100644 --- a/recipes/bioconductor-sc3/meta.yaml +++ b/recipes/bioconductor-sc3/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 198efa24f98a1c941fa8ad793d582e12 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scale4c/meta.yaml b/recipes/bioconductor-scale4c/meta.yaml index 3cd14c07af0fe..9647564ed88d3 100644 --- a/recipes/bioconductor-scale4c/meta.yaml +++ b/recipes/bioconductor-scale4c/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 12361c8ea9c3d72f3560fac83015a116 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scalign/meta.yaml b/recipes/bioconductor-scalign/meta.yaml index 37af6719f14ea..44fa851d895f1 100644 --- a/recipes/bioconductor-scalign/meta.yaml +++ b/recipes/bioconductor-scalign/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 08d737df935ad85a6b65cba882bf18f5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -30,8 +30,6 @@ requirements: - r-rtsne - 'r-seurat >=2.3.4' - r-tensorflow - - python <3.7 - - tensorflow run: - 'bioconductor-singlecellexperiment >=1.6.0,<1.7.0' - r-base @@ -42,8 +40,6 @@ requirements: - r-rtsne - 'r-seurat >=2.3.4' - r-tensorflow - - python <3.7 - - tensorflow test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-scan.upc/meta.yaml b/recipes/bioconductor-scan.upc/meta.yaml index 1fec7a7b739c4..43a3dfc4bd2dc 100644 --- a/recipes/bioconductor-scan.upc/meta.yaml +++ b/recipes/bioconductor-scan.upc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 60fdbafce89a0c2eea88316bab3d2f4b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scater/meta.yaml b/recipes/bioconductor-scater/meta.yaml index bb86e65d2e8b2..ef6000bacd21b 100644 --- a/recipes/bioconductor-scater/meta.yaml +++ b/recipes/bioconductor-scater/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.0" %} +{% set version = "1.12.2" %} {% set name = "scater" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: de59145813bb9cf3668d6b8113413bbd + md5: 851f38f58e1f9b1e1f6112d273d5ddbe build: number: 0 rpaths: diff --git a/recipes/bioconductor-scbn/meta.yaml b/recipes/bioconductor-scbn/meta.yaml index 0aa975e88b550..8e3408d8ea3ba 100644 --- a/recipes/bioconductor-scbn/meta.yaml +++ b/recipes/bioconductor-scbn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 70393c9f4b1630bf8d79e103c06bc43c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scdd/meta.yaml b/recipes/bioconductor-scdd/meta.yaml index 7c8d5706f11b2..d7bdc5cb3c288 100644 --- a/recipes/bioconductor-scdd/meta.yaml +++ b/recipes/bioconductor-scdd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 68b1fb9761657eb28f9b90e796d2e92b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scde/meta.yaml b/recipes/bioconductor-scde/meta.yaml index 0c708eb847a4b..7aa892a2a68f2 100644 --- a/recipes/bioconductor-scde/meta.yaml +++ b/recipes/bioconductor-scde/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1bc7fdc7e95e1fe2c34684111e503668 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scds/meta.yaml b/recipes/bioconductor-scds/meta.yaml index f34be70d6ec07..35c3d215dfd23 100644 --- a/recipes/bioconductor-scds/meta.yaml +++ b/recipes/bioconductor-scds/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3cbb33a493bb7e80601d4517d097571f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scfeaturefilter/meta.yaml b/recipes/bioconductor-scfeaturefilter/meta.yaml index 7c937930638d7..336bebe40d3c5 100644 --- a/recipes/bioconductor-scfeaturefilter/meta.yaml +++ b/recipes/bioconductor-scfeaturefilter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 24ca2e4e62ed8d14aac28b73efe1c449 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scfind/meta.yaml b/recipes/bioconductor-scfind/meta.yaml index 89d51985d58c5..f2561c1df4914 100644 --- a/recipes/bioconductor-scfind/meta.yaml +++ b/recipes/bioconductor-scfind/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e258b0f73b91921b7c068431b09fa3db build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scisi/meta.yaml b/recipes/bioconductor-scisi/meta.yaml index 2cab1f9f9a8e7..0a82d3876377b 100644 --- a/recipes/bioconductor-scisi/meta.yaml +++ b/recipes/bioconductor-scisi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 08db1fc90b15828040a6c7a997052f24 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sclcbam/meta.yaml b/recipes/bioconductor-sclcbam/meta.yaml index 64d731b8a16c5..9b11568072e7d 100644 --- a/recipes/bioconductor-sclcbam/meta.yaml +++ b/recipes/bioconductor-sclcbam/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e3a0df322f55197c0f2edf05cb00e655 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sclcbam/post-link.sh b/recipes/bioconductor-sclcbam/post-link.sh index e81fd049a731c..d587a6f386657 100644 --- a/recipes/bioconductor-sclcbam/post-link.sh +++ b/recipes/bioconductor-sclcbam/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SCLCBam_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/SCLCBam_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-sclcbam/bioconductor-sclcbam_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-sclcbam/bioconductor-sclcbam_1.16.0_src_all.tar.gz" ) MD5="e3a0df322f55197c0f2edf05cb00e655" diff --git a/recipes/bioconductor-scmap/meta.yaml b/recipes/bioconductor-scmap/meta.yaml index 50b4b168f5c88..375939c223f53 100644 --- a/recipes/bioconductor-scmap/meta.yaml +++ b/recipes/bioconductor-scmap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fbfc24aaeecf65952e59e18f2c598db7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scmerge/meta.yaml b/recipes/bioconductor-scmerge/meta.yaml index 4c61b31b37a98..2c47ab6535eaa 100644 --- a/recipes/bioconductor-scmerge/meta.yaml +++ b/recipes/bioconductor-scmerge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 38fc29f95339fe69c968234be33ac4ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scmeth/meta.yaml b/recipes/bioconductor-scmeth/meta.yaml index bc245262dfdf0..b99862b42babb 100644 --- a/recipes/bioconductor-scmeth/meta.yaml +++ b/recipes/bioconductor-scmeth/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3842b6dbd7a08a3f2e2d780ac1278cdd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scnorm/meta.yaml b/recipes/bioconductor-scnorm/meta.yaml index 8ec942be08db9..0739404c10330 100644 --- a/recipes/bioconductor-scnorm/meta.yaml +++ b/recipes/bioconductor-scnorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 03654c349ec319e48ba68c201858730e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scone/meta.yaml b/recipes/bioconductor-scone/meta.yaml index ad67626188ddf..4ca99de33e3ef 100644 --- a/recipes/bioconductor-scone/meta.yaml +++ b/recipes/bioconductor-scone/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0320a55f3d8bfedec227455ea94625e8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sconify/meta.yaml b/recipes/bioconductor-sconify/meta.yaml index 3d0e62cda6b8d..ba908ad4a37ad 100644 --- a/recipes/bioconductor-sconify/meta.yaml +++ b/recipes/bioconductor-sconify/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e47d764c109c9805e7353c11958afe6e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scoreinvhap/meta.yaml b/recipes/bioconductor-scoreinvhap/meta.yaml index 34581155423bb..c1cbff7c1fdcf 100644 --- a/recipes/bioconductor-scoreinvhap/meta.yaml +++ b/recipes/bioconductor-scoreinvhap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a2613081ec201c27e63afac172d80fa9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scpipe/meta.yaml b/recipes/bioconductor-scpipe/meta.yaml index 5d53100957d03..9baa0bb29f998 100644 --- a/recipes/bioconductor-scpipe/meta.yaml +++ b/recipes/bioconductor-scpipe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7b3a3482d6610048fcdc9156f44610dd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scran/meta.yaml b/recipes/bioconductor-scran/meta.yaml index 623f6ceee9483..38922fab88696 100644 --- a/recipes/bioconductor-scran/meta.yaml +++ b/recipes/bioconductor-scran/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.0" %} +{% set version = "1.12.1" %} {% set name = "scran" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: f41053591a02f6e35c902b9af6cc5efd + md5: 47c6eecbb45043814ee27edbb48be092 build: number: 0 rpaths: diff --git a/recipes/bioconductor-screcover/meta.yaml b/recipes/bioconductor-screcover/meta.yaml index 70640d9f4a943..d56e8936c0b13 100644 --- a/recipes/bioconductor-screcover/meta.yaml +++ b/recipes/bioconductor-screcover/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8cbf4391ae6493e1a8cfd34f7f585592 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scrnaseq/meta.yaml b/recipes/bioconductor-scrnaseq/meta.yaml index 28d51e2cf0724..8a59ec014319c 100644 --- a/recipes/bioconductor-scrnaseq/meta.yaml +++ b/recipes/bioconductor-scrnaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e9aded444d5781911c8678274f7abbbe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-scrnaseq/post-link.sh b/recipes/bioconductor-scrnaseq/post-link.sh index 4af1a7213e309..97f2ba89e7c3e 100644 --- a/recipes/bioconductor-scrnaseq/post-link.sh +++ b/recipes/bioconductor-scrnaseq/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/scRNAseq_1.10.0.tar.gz" "https://bioarchive.galaxyproject.org/scRNAseq_1.10.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-scrnaseq/bioconductor-scrnaseq_1.10.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-scrnaseq/bioconductor-scrnaseq_1.10.0_src_all.tar.gz" ) MD5="e9aded444d5781911c8678274f7abbbe" diff --git a/recipes/bioconductor-scruff/meta.yaml b/recipes/bioconductor-scruff/meta.yaml index 936ca5fe236e8..af8a15e65ddc6 100644 --- a/recipes/bioconductor-scruff/meta.yaml +++ b/recipes/bioconductor-scruff/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.4" %} {% set name = "scruff" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 3733ec635baad765a1e5f05a07b4b918 + md5: 5d02f55a5d578241ff2653488992d4fa build: number: 0 rpaths: diff --git a/recipes/bioconductor-scsr/meta.yaml b/recipes/bioconductor-scsr/meta.yaml index c4c7f81db79d1..b48ad14cef206 100644 --- a/recipes/bioconductor-scsr/meta.yaml +++ b/recipes/bioconductor-scsr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b6aa1d18d3ba19c7cf6b77052a550aad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sctensor/meta.yaml b/recipes/bioconductor-sctensor/meta.yaml index 444d2451bfe8c..9c3c2fb6206c6 100644 --- a/recipes/bioconductor-sctensor/meta.yaml +++ b/recipes/bioconductor-sctensor/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.12" %} {% set name = "scTensor" %} {% set bioc = "3.9" %} @@ -10,19 +10,19 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: e98fa149d49c2befcbc5d1b6be575041 + md5: 97983c2aa65ebf760990057ec8567dac build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: testthat, LRBase.Hsa.eg.db, MeSH.Hsa.eg.db, LRBase.Mmu.eg.db, MeSH.Mmu.eg.db, LRBaseDbi +# Suggests: testthat, LRBase.Hsa.eg.db, MeSH.Hsa.eg.db, LRBase.Mmu.eg.db, MeSH.Mmu.eg.db, LRBaseDbi, Seurat, Homo.sapiens requirements: host: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' + - 'bioconductor-annotationhub >=2.16.0,<2.17.0' - 'bioconductor-biocstyle >=2.12.0,<2.13.0' - - 'bioconductor-biomart >=2.40.0,<2.41.0' - 'bioconductor-category >=2.50.0,<2.51.0' - 'bioconductor-dose >=3.10.0,<3.11.0' - 'bioconductor-gostats >=2.50.0,<2.51.0' @@ -35,6 +35,7 @@ requirements: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - r-abind - r-base + - r-biocmanager - r-checkmate - r-crayon - r-heatmaply @@ -50,8 +51,8 @@ requirements: - r-tagcloud run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' + - 'bioconductor-annotationhub >=2.16.0,<2.17.0' - 'bioconductor-biocstyle >=2.12.0,<2.13.0' - - 'bioconductor-biomart >=2.40.0,<2.41.0' - 'bioconductor-category >=2.50.0,<2.51.0' - 'bioconductor-dose >=3.10.0,<3.11.0' - 'bioconductor-gostats >=2.50.0,<2.51.0' @@ -64,6 +65,7 @@ requirements: - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - r-abind - r-base + - r-biocmanager - r-checkmate - r-crayon - r-heatmaply diff --git a/recipes/bioconductor-sdams/meta.yaml b/recipes/bioconductor-sdams/meta.yaml index a81ce766a0032..2b70f535e7db8 100644 --- a/recipes/bioconductor-sdams/meta.yaml +++ b/recipes/bioconductor-sdams/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5d90e928e0187ec8d9f8f3a0013302f1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-segmentseq/meta.yaml b/recipes/bioconductor-segmentseq/meta.yaml index 4b7ef231f4e13..2583e994b3936 100644 --- a/recipes/bioconductor-segmentseq/meta.yaml +++ b/recipes/bioconductor-segmentseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f02009d37d365688285d7ca6106e7d27 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-selex/meta.yaml b/recipes/bioconductor-selex/meta.yaml index 02076b6cfcd1d..ae36162e23ac8 100644 --- a/recipes/bioconductor-selex/meta.yaml +++ b/recipes/bioconductor-selex/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 94bd0e2afdff212e8f350f096e67b3c8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-semdist/meta.yaml b/recipes/bioconductor-semdist/meta.yaml index 320172cdad122..65c166e7556b3 100644 --- a/recipes/bioconductor-semdist/meta.yaml +++ b/recipes/bioconductor-semdist/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9a7024a94ff4b88d11879bce11a2aaf3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-semisup/meta.yaml b/recipes/bioconductor-semisup/meta.yaml index 31c5ae0cf68db..5eff0434fbb2c 100644 --- a/recipes/bioconductor-semisup/meta.yaml +++ b/recipes/bioconductor-semisup/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 57a8dfe6011f2f46f1ca0960bd4309e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sepa/meta.yaml b/recipes/bioconductor-sepa/meta.yaml index 80bca946a3881..0b5f9be3cd5f2 100644 --- a/recipes/bioconductor-sepa/meta.yaml +++ b/recipes/bioconductor-sepa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ad3202957761df88df45c4485fa1bfe8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sepira/meta.yaml b/recipes/bioconductor-sepira/meta.yaml index f2db7e7f3e998..00a1ff286ef46 100644 --- a/recipes/bioconductor-sepira/meta.yaml +++ b/recipes/bioconductor-sepira/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.1" %} {% set name = "SEPIRA" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: fc977e6b55303e47f0ff69b5ea8a85fa + md5: 5be9f7efd63a01f6b0d29a743a7b6ab4 build: number: 0 rpaths: diff --git a/recipes/bioconductor-seq2pathway.data/meta.yaml b/recipes/bioconductor-seq2pathway.data/meta.yaml index 751bcd7e55da4..4c560f129be2a 100644 --- a/recipes/bioconductor-seq2pathway.data/meta.yaml +++ b/recipes/bioconductor-seq2pathway.data/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a41f1f988fee568e2437562bfca8703c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seq2pathway.data/post-link.sh b/recipes/bioconductor-seq2pathway.data/post-link.sh index d647ab9fa7543..6e3ed8f1c1294 100644 --- a/recipes/bioconductor-seq2pathway.data/post-link.sh +++ b/recipes/bioconductor-seq2pathway.data/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/seq2pathway.data_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/seq2pathway.data_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-seq2pathway.data/bioconductor-seq2pathway.data_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-seq2pathway.data/bioconductor-seq2pathway.data_1.16.0_src_all.tar.gz" ) MD5="a41f1f988fee568e2437562bfca8703c" diff --git a/recipes/bioconductor-seq2pathway/meta.yaml b/recipes/bioconductor-seq2pathway/meta.yaml index a1dad3f206ecb..a0db719bdba1b 100644 --- a/recipes/bioconductor-seq2pathway/meta.yaml +++ b/recipes/bioconductor-seq2pathway/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 37e014a88787011d7643a594a538b159 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqarray/meta.yaml b/recipes/bioconductor-seqarray/meta.yaml index c354dc11d3631..e3f20074b2878 100644 --- a/recipes/bioconductor-seqarray/meta.yaml +++ b/recipes/bioconductor-seqarray/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.24.0" %} +{% set version = "1.24.2" %} {% set name = "SeqArray" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 3ea2191e494c1722c1e0ae62d521478f + md5: ad853ee096353334f3870d7a7e38d510 build: number: 0 rpaths: diff --git a/recipes/bioconductor-seqbias/meta.yaml b/recipes/bioconductor-seqbias/meta.yaml index 903030aa833a9..998a9089eb2b7 100644 --- a/recipes/bioconductor-seqbias/meta.yaml +++ b/recipes/bioconductor-seqbias/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c4c6f16f1dffca33016753a4ed70d8b3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqc/meta.yaml b/recipes/bioconductor-seqc/meta.yaml index b88ce8cc50b87..2e5bc786f252b 100644 --- a/recipes/bioconductor-seqc/meta.yaml +++ b/recipes/bioconductor-seqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8ed0537e3d25d12ed357d0e570e30049 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqc/post-link.sh b/recipes/bioconductor-seqc/post-link.sh index 08a61c008fc86..c8dfada227939 100644 --- a/recipes/bioconductor-seqc/post-link.sh +++ b/recipes/bioconductor-seqc/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/seqc_1.18.0.tar.gz" "https://bioarchive.galaxyproject.org/seqc_1.18.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-seqc/bioconductor-seqc_1.18.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-seqc/bioconductor-seqc_1.18.0_src_all.tar.gz" ) MD5="8ed0537e3d25d12ed357d0e570e30049" diff --git a/recipes/bioconductor-seqcat/meta.yaml b/recipes/bioconductor-seqcat/meta.yaml index 0267d88edb2c1..85b189adb0e10 100644 --- a/recipes/bioconductor-seqcat/meta.yaml +++ b/recipes/bioconductor-seqcat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 95bbbd1158c0c8429095eeba482f6a76 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -50,5 +50,6 @@ test: - '$R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' - license: 'MIT' + license: 'MIT + file LICENCE' summary: 'The seqCAT package uses variant calling data (in the form of VCF files) from high throughput sequencing technologies to authenticate and validate the source, function and characteristics of biological samples used in scientific endeavours.' + diff --git a/recipes/bioconductor-seqcna.annot/meta.yaml b/recipes/bioconductor-seqcna.annot/meta.yaml index 7d6b57ce5eb49..50fe48416cd99 100644 --- a/recipes/bioconductor-seqcna.annot/meta.yaml +++ b/recipes/bioconductor-seqcna.annot/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4a10eacbb147f709e82af786f2566def build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqcna.annot/post-link.sh b/recipes/bioconductor-seqcna.annot/post-link.sh index 82190348650f3..a2bfc45312154 100644 --- a/recipes/bioconductor-seqcna.annot/post-link.sh +++ b/recipes/bioconductor-seqcna.annot/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/seqCNA.annot_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/seqCNA.annot_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-seqcna.annot/bioconductor-seqcna.annot_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-seqcna.annot/bioconductor-seqcna.annot_1.20.0_src_all.tar.gz" ) MD5="4a10eacbb147f709e82af786f2566def" diff --git a/recipes/bioconductor-seqcna/meta.yaml b/recipes/bioconductor-seqcna/meta.yaml index 6608e0c0ceeb9..20aadb1c9427a 100644 --- a/recipes/bioconductor-seqcna/meta.yaml +++ b/recipes/bioconductor-seqcna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4940c184d6dea7e54e8f31a025d39034 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -24,14 +24,12 @@ requirements: - 'r-adehabitatlt >=0.3.4' - r-base - 'r-dosnow >=1.0.5' - - samtools run: - 'bioconductor-glad >=2.48.0,<2.49.0' - 'bioconductor-seqcna.annot >=1.20.0,<1.21.0' - 'r-adehabitatlt >=0.3.4' - r-base - 'r-dosnow >=1.0.5' - - samtools build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-seqcombo/meta.yaml b/recipes/bioconductor-seqcombo/meta.yaml index b9b2680c4db2e..3b3c09204d9d7 100644 --- a/recipes/bioconductor-seqcombo/meta.yaml +++ b/recipes/bioconductor-seqcombo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ebf450a509b8bbd98589d6103a2b038b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqgsea/meta.yaml b/recipes/bioconductor-seqgsea/meta.yaml index dde4e832fe025..094eb442984e0 100644 --- a/recipes/bioconductor-seqgsea/meta.yaml +++ b/recipes/bioconductor-seqgsea/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 99baf889467af15810cf88111873c40f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqlogo/meta.yaml b/recipes/bioconductor-seqlogo/meta.yaml index 2b89916c93d2f..ee792593307a5 100644 --- a/recipes/bioconductor-seqlogo/meta.yaml +++ b/recipes/bioconductor-seqlogo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7d245f94e0c48b23022ad3b692187cb7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqpattern/meta.yaml b/recipes/bioconductor-seqpattern/meta.yaml index cc90f243dadb8..ab16dbef63009 100644 --- a/recipes/bioconductor-seqpattern/meta.yaml +++ b/recipes/bioconductor-seqpattern/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 44e22955071d0a0964000501a064f5ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqplots/meta.yaml b/recipes/bioconductor-seqplots/meta.yaml index 564f0bb54f3f6..9a4ef06f9c4af 100644 --- a/recipes/bioconductor-seqplots/meta.yaml +++ b/recipes/bioconductor-seqplots/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.21.1" %} +{% set version = "1.22.2" %} {% set name = "seqplots" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: d299aca2f3a5ef7673379d9f74195459 + md5: 69ef1cddcbe0454e1daa3cfaeae6491d build: number: 0 rpaths: diff --git a/recipes/bioconductor-seqsetvis/meta.yaml b/recipes/bioconductor-seqsetvis/meta.yaml index ff3ec54e96f05..b238e479dfba4 100644 --- a/recipes/bioconductor-seqsetvis/meta.yaml +++ b/recipes/bioconductor-seqsetvis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6fbe4689032ce83b38ffb48b78bb60bf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqsqc/meta.yaml b/recipes/bioconductor-seqsqc/meta.yaml index 07e49e52ea18b..af1bd616b44ba 100644 --- a/recipes/bioconductor-seqsqc/meta.yaml +++ b/recipes/bioconductor-seqsqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 612ddfb4d761b1e6cd4cce005f087c1a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqtools/meta.yaml b/recipes/bioconductor-seqtools/meta.yaml index c2d6276f723d9..735341e839916 100644 --- a/recipes/bioconductor-seqtools/meta.yaml +++ b/recipes/bioconductor-seqtools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 904b4952c0d23d19c87d8602bceeb870 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seqvartools/meta.yaml b/recipes/bioconductor-seqvartools/meta.yaml index 0baf672f583fb..4bd126c902675 100644 --- a/recipes/bioconductor-seqvartools/meta.yaml +++ b/recipes/bioconductor-seqvartools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 59346cf539f2ccb4f4a793895400071c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-serumstimulation/meta.yaml b/recipes/bioconductor-serumstimulation/meta.yaml index 203b2f2f31db9..f1edfd6532871 100644 --- a/recipes/bioconductor-serumstimulation/meta.yaml +++ b/recipes/bioconductor-serumstimulation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7fabd88ad4038ffd70bb9b8b27738947 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-serumstimulation/post-link.sh b/recipes/bioconductor-serumstimulation/post-link.sh index 2ee855fdea84a..5d515ebb9ac7a 100644 --- a/recipes/bioconductor-serumstimulation/post-link.sh +++ b/recipes/bioconductor-serumstimulation/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/serumStimulation_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/serumStimulation_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-serumstimulation/bioconductor-serumstimulation_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-serumstimulation/bioconductor-serumstimulation_1.20.0_src_all.tar.gz" ) MD5="7fabd88ad4038ffd70bb9b8b27738947" diff --git a/recipes/bioconductor-sesame/meta.yaml b/recipes/bioconductor-sesame/meta.yaml index b5e479095ac38..b6543b1783899 100644 --- a/recipes/bioconductor-sesame/meta.yaml +++ b/recipes/bioconductor-sesame/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c9e4ba0dc614dc3c0f55849a40b2535d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sesamedata/meta.yaml b/recipes/bioconductor-sesamedata/meta.yaml index 059ff9ca9ca18..815691363b652 100644 --- a/recipes/bioconductor-sesamedata/meta.yaml +++ b/recipes/bioconductor-sesamedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1be0375bcd00351ee53e3ea7b812bfab build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sesamedata/post-link.sh b/recipes/bioconductor-sesamedata/post-link.sh index f811aa678ad8d..a1a4bdc587f0a 100644 --- a/recipes/bioconductor-sesamedata/post-link.sh +++ b/recipes/bioconductor-sesamedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/sesameData_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/sesameData_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-sesamedata/bioconductor-sesamedata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-sesamedata/bioconductor-sesamedata_1.2.0_src_all.tar.gz" ) MD5="1be0375bcd00351ee53e3ea7b812bfab" diff --git a/recipes/bioconductor-sevenbridges/meta.yaml b/recipes/bioconductor-sevenbridges/meta.yaml index 0b7364df05681..f97f7b5a3153a 100644 --- a/recipes/bioconductor-sevenbridges/meta.yaml +++ b/recipes/bioconductor-sevenbridges/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.14.0" %} +{% set version = "1.14.1" %} {% set name = "sevenbridges" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 1b618e2203f2178101f52ccce203e42c + md5: efcacb4f31d0e0698fa3aae9266adf48 build: number: 0 rpaths: diff --git a/recipes/bioconductor-sevenc/meta.yaml b/recipes/bioconductor-sevenc/meta.yaml index 2bbe67533bf66..798c239f6c39a 100644 --- a/recipes/bioconductor-sevenc/meta.yaml +++ b/recipes/bioconductor-sevenc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 81ac097106bad8243943bcca8cc969c7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seventygenedata/meta.yaml b/recipes/bioconductor-seventygenedata/meta.yaml index 2e7d14c8db406..afb4bd171b7f8 100644 --- a/recipes/bioconductor-seventygenedata/meta.yaml +++ b/recipes/bioconductor-seventygenedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8a2c6bc5c05bb81a31f58667cde3018d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-seventygenedata/post-link.sh b/recipes/bioconductor-seventygenedata/post-link.sh index 88bd216ea71b7..cc5c12bfd678e 100644 --- a/recipes/bioconductor-seventygenedata/post-link.sh +++ b/recipes/bioconductor-seventygenedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/seventyGeneData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/seventyGeneData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-seventygenedata/bioconductor-seventygenedata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-seventygenedata/bioconductor-seventygenedata_1.20.0_src_all.tar.gz" ) MD5="8a2c6bc5c05bb81a31f58667cde3018d" diff --git a/recipes/bioconductor-sgseq/meta.yaml b/recipes/bioconductor-sgseq/meta.yaml index dd155352152dc..84d1c17ebcf2d 100644 --- a/recipes/bioconductor-sgseq/meta.yaml +++ b/recipes/bioconductor-sgseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d9a682543d590316afbaacd1391433cf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-shdz.db/meta.yaml b/recipes/bioconductor-shdz.db/meta.yaml index fa5dd41646d39..041647b700897 100644 --- a/recipes/bioconductor-shdz.db/meta.yaml +++ b/recipes/bioconductor-shdz.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 63c4439a272a5cd0c4746e9e53a7bdc7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-shinymethyl/meta.yaml b/recipes/bioconductor-shinymethyl/meta.yaml index aab70afb7dc1e..a7bd287f941b1 100644 --- a/recipes/bioconductor-shinymethyl/meta.yaml +++ b/recipes/bioconductor-shinymethyl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4ce2a8ab4a4cd25c1d9d222ff8aa4147 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-shinymethyldata/meta.yaml b/recipes/bioconductor-shinymethyldata/meta.yaml index d58f86f6c2ff8..5580c0e11632f 100644 --- a/recipes/bioconductor-shinymethyldata/meta.yaml +++ b/recipes/bioconductor-shinymethyldata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f646ba21155e7392c9b00814e56e6967 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-shinymethyldata/post-link.sh b/recipes/bioconductor-shinymethyldata/post-link.sh index b82be8a7c4c4b..c84f2f27187f2 100644 --- a/recipes/bioconductor-shinymethyldata/post-link.sh +++ b/recipes/bioconductor-shinymethyldata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/shinyMethylData_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/shinyMethylData_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-shinymethyldata/bioconductor-shinymethyldata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-shinymethyldata/bioconductor-shinymethyldata_1.4.0_src_all.tar.gz" ) MD5="f646ba21155e7392c9b00814e56e6967" diff --git a/recipes/bioconductor-shinytandem/meta.yaml b/recipes/bioconductor-shinytandem/meta.yaml index e3c04d2a21ed7..1d4f44b863766 100644 --- a/recipes/bioconductor-shinytandem/meta.yaml +++ b/recipes/bioconductor-shinytandem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9d5e6eaa09ab0512d77bcb5c0821d759 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-shortread/meta.yaml b/recipes/bioconductor-shortread/meta.yaml index 41a7f8fdf7a09..e1706fc45343e 100644 --- a/recipes/bioconductor-shortread/meta.yaml +++ b/recipes/bioconductor-shortread/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2acf79d7db1b63a807cc4a3e597b80bc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-siamcat/meta.yaml b/recipes/bioconductor-siamcat/meta.yaml index a2530695ddfa0..e411ce3215cc1 100644 --- a/recipes/bioconductor-siamcat/meta.yaml +++ b/recipes/bioconductor-siamcat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2966081b0a9da9d2182c528d48b5f065 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sictools/meta.yaml b/recipes/bioconductor-sictools/meta.yaml index 36af15e5b3775..941af74f81139 100644 --- a/recipes/bioconductor-sictools/meta.yaml +++ b/recipes/bioconductor-sictools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a83288a7b568a23fb4e341d02898c93f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sift.hsapiens.dbsnp132/meta.yaml b/recipes/bioconductor-sift.hsapiens.dbsnp132/meta.yaml index 2d35208887d32..c2c2967f7dd4d 100644 --- a/recipes/bioconductor-sift.hsapiens.dbsnp132/meta.yaml +++ b/recipes/bioconductor-sift.hsapiens.dbsnp132/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c374f0bf4c99357cfe99e0b192c00d75 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sift.hsapiens.dbsnp137/meta.yaml b/recipes/bioconductor-sift.hsapiens.dbsnp137/meta.yaml index 1ce5e64678494..52023084aac58 100644 --- a/recipes/bioconductor-sift.hsapiens.dbsnp137/meta.yaml +++ b/recipes/bioconductor-sift.hsapiens.dbsnp137/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3c3e73f826399af5ff368d1aab12cfd1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sigar/meta.yaml b/recipes/bioconductor-sigar/meta.yaml index eaf3811e5bcdd..bde11f4bcd8c9 100644 --- a/recipes/bioconductor-sigar/meta.yaml +++ b/recipes/bioconductor-sigar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 593f28de781124788a38acc25e3e95ea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sigcheck/meta.yaml b/recipes/bioconductor-sigcheck/meta.yaml index 707674f8884e8..78398a4b385e3 100644 --- a/recipes/bioconductor-sigcheck/meta.yaml +++ b/recipes/bioconductor-sigcheck/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c976fbe0fc31ae7bfdbee833ba2a1af8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sigfeature/meta.yaml b/recipes/bioconductor-sigfeature/meta.yaml index bdb1fd5130901..ba354ea132ec3 100644 --- a/recipes/bioconductor-sigfeature/meta.yaml +++ b/recipes/bioconductor-sigfeature/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8fdee0fdd11816dea036a8bcc43f714b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sigfuge/meta.yaml b/recipes/bioconductor-sigfuge/meta.yaml index 35abcd2189ef8..11362e6b6d1b1 100644 --- a/recipes/bioconductor-sigfuge/meta.yaml +++ b/recipes/bioconductor-sigfuge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 630ba0ad1edb05c6c3f19b8d612e8163 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-siggenes/meta.yaml b/recipes/bioconductor-siggenes/meta.yaml index cc4eb8095d905..fd6d461b5b293 100644 --- a/recipes/bioconductor-siggenes/meta.yaml +++ b/recipes/bioconductor-siggenes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c94454bf57390fbc699c3b02144177d6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sights/meta.yaml b/recipes/bioconductor-sights/meta.yaml index bb1057304eba6..5520fccc1785e 100644 --- a/recipes/bioconductor-sights/meta.yaml +++ b/recipes/bioconductor-sights/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 114674c0f24aeacc971a581bb3f50cd3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-signer/meta.yaml b/recipes/bioconductor-signer/meta.yaml index 2a98235ba68bc..c0926b3249650 100644 --- a/recipes/bioconductor-signer/meta.yaml +++ b/recipes/bioconductor-signer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eb18254515946efe1641254d1e3bd639 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-signet/meta.yaml b/recipes/bioconductor-signet/meta.yaml index 12f08f87742d5..1d12a25c61d5e 100644 --- a/recipes/bioconductor-signet/meta.yaml +++ b/recipes/bioconductor-signet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e1799bca498f155881e1eadfc9934cd5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sigpathway/meta.yaml b/recipes/bioconductor-sigpathway/meta.yaml index 2d6a5379e13c4..c03894fcfa04a 100644 --- a/recipes/bioconductor-sigpathway/meta.yaml +++ b/recipes/bioconductor-sigpathway/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e6b44d4bb6be64e4b25ac5a1682aa9f2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sigsquared/meta.yaml b/recipes/bioconductor-sigsquared/meta.yaml index 4cfd532699543..b33e90a8ea6ca 100644 --- a/recipes/bioconductor-sigsquared/meta.yaml +++ b/recipes/bioconductor-sigsquared/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c2a6ab23b6c6df437e2164bd22741a06 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-silva128.1mgdb/meta.yaml b/recipes/bioconductor-silva128.1mgdb/meta.yaml index 854acda9df15b..b94c407024ef3 100644 --- a/recipes/bioconductor-silva128.1mgdb/meta.yaml +++ b/recipes/bioconductor-silva128.1mgdb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f73cc038441a0a166c07582eec9a77b4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sim/meta.yaml b/recipes/bioconductor-sim/meta.yaml index 3666c0789d963..54b9234ad428f 100644 --- a/recipes/bioconductor-sim/meta.yaml +++ b/recipes/bioconductor-sim/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 889785353c57a16d34e19c3c62652cea build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-simat/meta.yaml b/recipes/bioconductor-simat/meta.yaml index 1f6396320cf91..fa85a11f91ef3 100644 --- a/recipes/bioconductor-simat/meta.yaml +++ b/recipes/bioconductor-simat/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 205568831e77d3ad2c948c59897a98ac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-simbindprofiles/meta.yaml b/recipes/bioconductor-simbindprofiles/meta.yaml index 159f26482608e..38c0efe6a657a 100644 --- a/recipes/bioconductor-simbindprofiles/meta.yaml +++ b/recipes/bioconductor-simbindprofiles/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a8a894ca754170d902be58c782e9644b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-simd/meta.yaml b/recipes/bioconductor-simd/meta.yaml index b11e234382077..33713ea3083a7 100644 --- a/recipes/bioconductor-simd/meta.yaml +++ b/recipes/bioconductor-simd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f16d1032aca332c206c4f96d1eb967cf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-similarpeak/meta.yaml b/recipes/bioconductor-similarpeak/meta.yaml index 24c648a4f9f3e..cab203de2692f 100644 --- a/recipes/bioconductor-similarpeak/meta.yaml +++ b/recipes/bioconductor-similarpeak/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cbe863e05270e59cb80abd239fbd1182 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-simlr/meta.yaml b/recipes/bioconductor-simlr/meta.yaml index 3b068c318d991..c672a1612f6c5 100644 --- a/recipes/bioconductor-simlr/meta.yaml +++ b/recipes/bioconductor-simlr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e4b3f7ebe8ef92491f009efc463ccd2c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-simpintlists/meta.yaml b/recipes/bioconductor-simpintlists/meta.yaml index efba566824c23..a7421c368378a 100644 --- a/recipes/bioconductor-simpintlists/meta.yaml +++ b/recipes/bioconductor-simpintlists/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 27879fea1d9ddd0404829b7de8eaae77 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-simpintlists/post-link.sh b/recipes/bioconductor-simpintlists/post-link.sh index fcc0f07d1d99d..2d9ba0beebf25 100644 --- a/recipes/bioconductor-simpintlists/post-link.sh +++ b/recipes/bioconductor-simpintlists/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/simpIntLists_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/simpIntLists_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-simpintlists/bioconductor-simpintlists_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-simpintlists/bioconductor-simpintlists_1.20.0_src_all.tar.gz" ) MD5="27879fea1d9ddd0404829b7de8eaae77" diff --git a/recipes/bioconductor-simpleaffy/meta.yaml b/recipes/bioconductor-simpleaffy/meta.yaml index 213d051ae998f..0a3c8d004edfc 100644 --- a/recipes/bioconductor-simpleaffy/meta.yaml +++ b/recipes/bioconductor-simpleaffy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: cdc3ec6c91a8a9495b4bf5af62a5b1c8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-simulatorz/meta.yaml b/recipes/bioconductor-simulatorz/meta.yaml index 52e7da0e8c095..1be0f19d04255 100644 --- a/recipes/bioconductor-simulatorz/meta.yaml +++ b/recipes/bioconductor-simulatorz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c4e86e7faa46af6795bc943eb311384e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sincell/meta.yaml b/recipes/bioconductor-sincell/meta.yaml index 05b65b3bb27c6..5e8030c8ea2d7 100644 --- a/recipes/bioconductor-sincell/meta.yaml +++ b/recipes/bioconductor-sincell/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e5fe14dc73fdf0a8acc9e2cd85558d33 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-single.mtec.transcriptomes/meta.yaml b/recipes/bioconductor-single.mtec.transcriptomes/meta.yaml index daafd3efa2df9..741253baf07c0 100644 --- a/recipes/bioconductor-single.mtec.transcriptomes/meta.yaml +++ b/recipes/bioconductor-single.mtec.transcriptomes/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8d1e883b5ca8e20ba358a4988827fb6c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-single.mtec.transcriptomes/post-link.sh b/recipes/bioconductor-single.mtec.transcriptomes/post-link.sh index 5ee1b29efa6de..f748ff213b68a 100644 --- a/recipes/bioconductor-single.mtec.transcriptomes/post-link.sh +++ b/recipes/bioconductor-single.mtec.transcriptomes/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Single.mTEC.Transcriptomes_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/Single.mTEC.Transcriptomes_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-single.mtec.transcriptomes/bioconductor-single.mtec.transcriptomes_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-single.mtec.transcriptomes/bioconductor-single.mtec.transcriptomes_1.12.0_src_all.tar.gz" ) MD5="8d1e883b5ca8e20ba358a4988827fb6c" diff --git a/recipes/bioconductor-singlecellexperiment/meta.yaml b/recipes/bioconductor-singlecellexperiment/meta.yaml index 6ab39aae522e1..4899496b3a26c 100644 --- a/recipes/bioconductor-singlecellexperiment/meta.yaml +++ b/recipes/bioconductor-singlecellexperiment/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e100bdfc9835d03ae02111994ec5e4d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-singlecelltk/meta.yaml b/recipes/bioconductor-singlecelltk/meta.yaml index 81fb92506f815..dfd8135dfb4f2 100644 --- a/recipes/bioconductor-singlecelltk/meta.yaml +++ b/recipes/bioconductor-singlecelltk/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 27a03a7ff4f1da68d92660342e6f74d7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-singscore/meta.yaml b/recipes/bioconductor-singscore/meta.yaml index ef7a178d7ef3b..0f21be5df1640 100644 --- a/recipes/bioconductor-singscore/meta.yaml +++ b/recipes/bioconductor-singscore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 22d04aef20157eb31727850d14d61ef8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sispa/meta.yaml b/recipes/bioconductor-sispa/meta.yaml index 4007cdd8f3248..3be0e23b850cb 100644 --- a/recipes/bioconductor-sispa/meta.yaml +++ b/recipes/bioconductor-sispa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9055444742c1fce2978063c887f3b2d1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sitepath/meta.yaml b/recipes/bioconductor-sitepath/meta.yaml index 500fc46a2a634..998e507ffc872 100644 --- a/recipes/bioconductor-sitepath/meta.yaml +++ b/recipes/bioconductor-sitepath/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.1" %} +{% set version = "1.0.2" %} {% set name = "sitePath" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: db52a84101a3b28cfea53c10edb2301b + md5: 073eafc2b9f8ef7c0b77b736bb224172 build: number: 0 rpaths: diff --git a/recipes/bioconductor-sizepower/meta.yaml b/recipes/bioconductor-sizepower/meta.yaml index eba354f2e247e..ff6d67fafd5e7 100644 --- a/recipes/bioconductor-sizepower/meta.yaml +++ b/recipes/bioconductor-sizepower/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: aa63d5cfb52739ea3c771254418d12a9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-skewr/meta.yaml b/recipes/bioconductor-skewr/meta.yaml index 00b64fc3287c4..00fc91f7a9e3c 100644 --- a/recipes/bioconductor-skewr/meta.yaml +++ b/recipes/bioconductor-skewr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0e217f39aa6dbe285584453fa6e5e710 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-slalom/meta.yaml b/recipes/bioconductor-slalom/meta.yaml index b1a37df2c5450..d7c4983e39183 100644 --- a/recipes/bioconductor-slalom/meta.yaml +++ b/recipes/bioconductor-slalom/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 76c07e6bd25335b1c7ddd97569ee927b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-slgi/meta.yaml b/recipes/bioconductor-slgi/meta.yaml index 86125e96dc062..674b00f50a717 100644 --- a/recipes/bioconductor-slgi/meta.yaml +++ b/recipes/bioconductor-slgi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dfff03ee3b9f7397bd81b0fa38743465 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-slingshot/build.sh b/recipes/bioconductor-slingshot/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-slingshot/build.sh +++ b/recipes/bioconductor-slingshot/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-slingshot/meta.yaml b/recipes/bioconductor-slingshot/meta.yaml index 052ed518bc760..dc1215ab37511 100644 --- a/recipes/bioconductor-slingshot/meta.yaml +++ b/recipes/bioconductor-slingshot/meta.yaml @@ -12,13 +12,20 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f7080eedc58ac571193933bc5808dbcf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic # Suggests: BiocGenerics, BiocStyle, destiny, gam, knitr, mclust, RColorBrewer, rmarkdown, testthat, covr requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-clusterexperiment >=2.4.0,<2.5.0' - 'bioconductor-singlecellexperiment >=1.6.0,<1.7.0' @@ -41,7 +48,7 @@ requirements: - r-rgl test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 diff --git a/recipes/bioconductor-slinky/meta.yaml b/recipes/bioconductor-slinky/meta.yaml index dacae076c149b..c3525cf9f66fb 100644 --- a/recipes/bioconductor-slinky/meta.yaml +++ b/recipes/bioconductor-slinky/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5bbd1b1b668790473b668873db8c57c0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-slqpcr/meta.yaml b/recipes/bioconductor-slqpcr/meta.yaml index 0a21da9804f16..ffd693a453e65 100644 --- a/recipes/bioconductor-slqpcr/meta.yaml +++ b/recipes/bioconductor-slqpcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9bc228a165da0ae0713484af9968369f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-smad/meta.yaml b/recipes/bioconductor-smad/meta.yaml index b7d2676e5c2e7..c21ba8b177128 100644 --- a/recipes/bioconductor-smad/meta.yaml +++ b/recipes/bioconductor-smad/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "SMAD" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 9178636a8c2ce9b6541b26e16744b2e6 + md5: 93fb674a64c0702e64b0cd69b128f36b build: number: 0 rpaths: @@ -42,5 +42,5 @@ test: about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'MIT + file LICENSE' - summary: 'Assigning probability scores to prey proteins captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein- protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.' + summary: 'Assigning probability scores to prey proteins captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.' diff --git a/recipes/bioconductor-smap/meta.yaml b/recipes/bioconductor-smap/meta.yaml index c7e884f716b6c..7dbe7f6b522b7 100644 --- a/recipes/bioconductor-smap/meta.yaml +++ b/recipes/bioconductor-smap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e7f7c7e177651e2116ee07d18352404e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-smite/meta.yaml b/recipes/bioconductor-smite/meta.yaml index 5d3ee1c11e3d1..09adcd1c37eb4 100644 --- a/recipes/bioconductor-smite/meta.yaml +++ b/recipes/bioconductor-smite/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 958783774ed22e06691609c65a2bf1fb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snadata/meta.yaml b/recipes/bioconductor-snadata/meta.yaml index 286852b06918b..ed65f2f590012 100644 --- a/recipes/bioconductor-snadata/meta.yaml +++ b/recipes/bioconductor-snadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aebebfd31a60cb7878138c1aadea000d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snadata/post-link.sh b/recipes/bioconductor-snadata/post-link.sh index 1c2da43e5e77b..16daa970d8ab4 100644 --- a/recipes/bioconductor-snadata/post-link.sh +++ b/recipes/bioconductor-snadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SNAData_1.30.0.tar.gz" "https://bioarchive.galaxyproject.org/SNAData_1.30.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-snadata/bioconductor-snadata_1.30.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-snadata/bioconductor-snadata_1.30.0_src_all.tar.gz" ) MD5="aebebfd31a60cb7878138c1aadea000d" diff --git a/recipes/bioconductor-snagee/meta.yaml b/recipes/bioconductor-snagee/meta.yaml index b8fb45b172b67..66a22d9246342 100644 --- a/recipes/bioconductor-snagee/meta.yaml +++ b/recipes/bioconductor-snagee/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fea3ccc1b2941228ac53614c78d42f5e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snageedata/meta.yaml b/recipes/bioconductor-snageedata/meta.yaml index f980f1791d628..e254b626dd0e3 100644 --- a/recipes/bioconductor-snageedata/meta.yaml +++ b/recipes/bioconductor-snageedata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f95756e911a82831c37171ed8192d7a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snageedata/post-link.sh b/recipes/bioconductor-snageedata/post-link.sh index 5fba28e15a7e7..8c9b9169ba214 100644 --- a/recipes/bioconductor-snageedata/post-link.sh +++ b/recipes/bioconductor-snageedata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SNAGEEdata_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/SNAGEEdata_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-snageedata/bioconductor-snageedata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-snageedata/bioconductor-snageedata_1.20.0_src_all.tar.gz" ) MD5="6f95756e911a82831c37171ed8192d7a" diff --git a/recipes/bioconductor-snapcgh/meta.yaml b/recipes/bioconductor-snapcgh/meta.yaml index 78be7d68881fd..457fd12860e2d 100644 --- a/recipes/bioconductor-snapcgh/meta.yaml +++ b/recipes/bioconductor-snapcgh/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 421d82a4d75f4c064f215b77e2bf7d23 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snm/meta.yaml b/recipes/bioconductor-snm/meta.yaml index 1e5ce73283106..831c3ea259bf1 100644 --- a/recipes/bioconductor-snm/meta.yaml +++ b/recipes/bioconductor-snm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 582f0ede18333be9c56f09fb59898af6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snpchip/meta.yaml b/recipes/bioconductor-snpchip/meta.yaml index eb1c1b723254f..bcf4dc88146e4 100644 --- a/recipes/bioconductor-snpchip/meta.yaml +++ b/recipes/bioconductor-snpchip/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7f754e0adc04950c72bdf08c4944374b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snpediar/meta.yaml b/recipes/bioconductor-snpediar/meta.yaml index ef2a28b978dac..22de505f752ac 100644 --- a/recipes/bioconductor-snpediar/meta.yaml +++ b/recipes/bioconductor-snpediar/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9b5250e8021dc88cd29b37c1c1a5db03 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snphood/meta.yaml b/recipes/bioconductor-snphood/meta.yaml index 72456edbb5ef5..2d83742321948 100644 --- a/recipes/bioconductor-snphood/meta.yaml +++ b/recipes/bioconductor-snphood/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3dcba58f2b36e47a0624d150b80e2bd7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snphooddata/meta.yaml b/recipes/bioconductor-snphooddata/meta.yaml index 05f119f385cde..ca5eed6264801 100644 --- a/recipes/bioconductor-snphooddata/meta.yaml +++ b/recipes/bioconductor-snphooddata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 932f101b78576f7a6407704d3031fdbf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snphooddata/post-link.sh b/recipes/bioconductor-snphooddata/post-link.sh index 6d7168385166e..c395d5a6c38be 100644 --- a/recipes/bioconductor-snphooddata/post-link.sh +++ b/recipes/bioconductor-snphooddata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SNPhoodData_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/SNPhoodData_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-snphooddata/bioconductor-snphooddata_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-snphooddata/bioconductor-snphooddata_1.14.0_src_all.tar.gz" ) MD5="932f101b78576f7a6407704d3031fdbf" diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp.20101109/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp.20101109/meta.yaml index c184535ee776e..c1603083532af 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp.20101109/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp.20101109/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d18cef7792978f5827025671b1866230 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp.20120608/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp.20120608/meta.yaml index 3aea380c3a629..9798609ee881f 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp.20120608/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp.20120608/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f06b9f619994b2a9b0fd780ead2f0cc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp141.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp141.grch38/meta.yaml index 951423aa2659a..fb39d0e04071f 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp141.grch38/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp141.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 40b55447c33e9d72c2ae8e8fe7f484be build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp142.grch37/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp142.grch37/meta.yaml index 5cdbbedfbd748..b873f7d18e7bd 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp142.grch37/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp142.grch37/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3038e4f766d3e24f5b7286961a03ba35 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37/meta.yaml index 686465503a808..a7b8d396534cb 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bd338bb583cacc18f210e871dac79ebf build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38/meta.yaml index c4373c4b856dd..ff659c58181fc 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 128c95e327adf72ae137fb5ae58270fc build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/meta.yaml index deabef06c2794..2734ee2eae7bb 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8cf749a8649a53449066b54160a3745c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml index e41ce30beb132..e6bbf722893fe 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 575a7aaa9125d52ca0634b3ac586c9a7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp151.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp151.grch38/meta.yaml index 80c25d654628a..7c8a2793ba5d9 100644 --- a/recipes/bioconductor-snplocs.hsapiens.dbsnp151.grch38/meta.yaml +++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp151.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0c1637530d42b10d3e6b8dead09454e7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-snprelate/meta.yaml b/recipes/bioconductor-snprelate/meta.yaml index 325eabf773512..b8f385aac18d3 100644 --- a/recipes/bioconductor-snprelate/meta.yaml +++ b/recipes/bioconductor-snprelate/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.1" %} {% set name = "SNPRelate" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: c6c8469a3a7672844c59d5069400d09b + md5: ef88d834b860e46d7ec53d6c3bdd3383 build: number: 0 rpaths: diff --git a/recipes/bioconductor-snpstats/meta.yaml b/recipes/bioconductor-snpstats/meta.yaml index 64a22119cd13e..973219506d0d1 100644 --- a/recipes/bioconductor-snpstats/meta.yaml +++ b/recipes/bioconductor-snpstats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b4a3c967936226141b748b94b9d8e008 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-soggi/meta.yaml b/recipes/bioconductor-soggi/meta.yaml index 80f8dbd97a71f..1b256135ed923 100644 --- a/recipes/bioconductor-soggi/meta.yaml +++ b/recipes/bioconductor-soggi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 099cf8703b747d9c23f391267c3d035c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-somaticadata/meta.yaml b/recipes/bioconductor-somaticadata/meta.yaml index 26af8df15b155..5afb64a94fcce 100644 --- a/recipes/bioconductor-somaticadata/meta.yaml +++ b/recipes/bioconductor-somaticadata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 59d6519327a11557942dceb5765787bb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-somaticadata/post-link.sh b/recipes/bioconductor-somaticadata/post-link.sh index ffa62651608aa..1eba424112b59 100644 --- a/recipes/bioconductor-somaticadata/post-link.sh +++ b/recipes/bioconductor-somaticadata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SomatiCAData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/SomatiCAData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-somaticadata/bioconductor-somaticadata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-somaticadata/bioconductor-somaticadata_1.22.0_src_all.tar.gz" ) MD5="59d6519327a11557942dceb5765787bb" diff --git a/recipes/bioconductor-somaticcanceralterations/meta.yaml b/recipes/bioconductor-somaticcanceralterations/meta.yaml index 321712ff06515..2f453eb702e6b 100644 --- a/recipes/bioconductor-somaticcanceralterations/meta.yaml +++ b/recipes/bioconductor-somaticcanceralterations/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aaf2b8c5ef006b545d1c383fefa35dca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-somaticcanceralterations/post-link.sh b/recipes/bioconductor-somaticcanceralterations/post-link.sh index 6ac21f0a46920..dc2670c99c333 100644 --- a/recipes/bioconductor-somaticcanceralterations/post-link.sh +++ b/recipes/bioconductor-somaticcanceralterations/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SomaticCancerAlterations_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/SomaticCancerAlterations_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-somaticcanceralterations/bioconductor-somaticcanceralterations_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-somaticcanceralterations/bioconductor-somaticcanceralterations_1.20.0_src_all.tar.gz" ) MD5="aaf2b8c5ef006b545d1c383fefa35dca" diff --git a/recipes/bioconductor-somaticsignatures/meta.yaml b/recipes/bioconductor-somaticsignatures/meta.yaml index 0c0a4a9995d13..b835febd0c984 100644 --- a/recipes/bioconductor-somaticsignatures/meta.yaml +++ b/recipes/bioconductor-somaticsignatures/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e58cba6da7933d68912454b2b628bcad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-soybeancdf/meta.yaml b/recipes/bioconductor-soybeancdf/meta.yaml index 72f4329aa3591..ddee4c4b25879 100644 --- a/recipes/bioconductor-soybeancdf/meta.yaml +++ b/recipes/bioconductor-soybeancdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a18e0ba5dbcf2291bdec91091dc528e6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-soybeanprobe/meta.yaml b/recipes/bioconductor-soybeanprobe/meta.yaml index 5b276f3f7c6c9..55a16edbd2ebd 100644 --- a/recipes/bioconductor-soybeanprobe/meta.yaml +++ b/recipes/bioconductor-soybeanprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3057a5c387ff35b6c647c4db27041a13 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-spacepac/meta.yaml b/recipes/bioconductor-spacepac/meta.yaml index 26950243624d2..9f74896e0e72a 100644 --- a/recipes/bioconductor-spacepac/meta.yaml +++ b/recipes/bioconductor-spacepac/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 95329db0a49f8763beb15579fd6c86cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sparsedossa/meta.yaml b/recipes/bioconductor-sparsedossa/meta.yaml index ab95156ab4e99..6e31353884d70 100644 --- a/recipes/bioconductor-sparsedossa/meta.yaml +++ b/recipes/bioconductor-sparsedossa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1ba9d3c5f2a18a6e5885a628f8e805ef build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sparsenetgls/meta.yaml b/recipes/bioconductor-sparsenetgls/meta.yaml index c5234f4608fe4..96ebee30aa1fd 100644 --- a/recipes/bioconductor-sparsenetgls/meta.yaml +++ b/recipes/bioconductor-sparsenetgls/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eb62a6fdb54d805ca4e657806b5e1d2f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sparsesignatures/meta.yaml b/recipes/bioconductor-sparsesignatures/meta.yaml index 26734bd5dd472..8c53981aa6133 100644 --- a/recipes/bioconductor-sparsesignatures/meta.yaml +++ b/recipes/bioconductor-sparsesignatures/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ef3f68da832a955cea902fe55e383334 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,7 +22,7 @@ requirements: host: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - 'bioconductor-bsgenome >=1.52.0,<1.53.0' - - 'bioconductor-bsgenome.hsapiens.1000genomes.hs37d5 >=1.0.0,<1.1.0' + - 'bioconductor-bsgenome.hsapiens.1000genomes.hs37d5 >=0.99.0,<0.100.0' - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' @@ -36,7 +36,7 @@ requirements: run: - 'bioconductor-biostrings >=2.52.0,<2.53.0' - 'bioconductor-bsgenome >=1.52.0,<1.53.0' - - 'bioconductor-bsgenome.hsapiens.1000genomes.hs37d5 >=1.0.0,<1.1.0' + - 'bioconductor-bsgenome.hsapiens.1000genomes.hs37d5 >=0.99.0,<0.100.0' - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' diff --git a/recipes/bioconductor-spatialcpie/meta.yaml b/recipes/bioconductor-spatialcpie/meta.yaml index 5552cd088ca78..9582b2d490a44 100644 --- a/recipes/bioconductor-spatialcpie/meta.yaml +++ b/recipes/bioconductor-spatialcpie/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4f03a2bb6e955655a7d760f494379e9d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-specl/meta.yaml b/recipes/bioconductor-specl/meta.yaml index 378f36f136d6b..58fad28f68225 100644 --- a/recipes/bioconductor-specl/meta.yaml +++ b/recipes/bioconductor-specl/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4a1307fb9987edd64375397ee5c88b40 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-specond/meta.yaml b/recipes/bioconductor-specond/meta.yaml index d1b8e2233b2f3..2512af696dbcf 100644 --- a/recipes/bioconductor-specond/meta.yaml +++ b/recipes/bioconductor-specond/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 249bc80969357bdfbc83be3ab304ce47 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-spectraltad/meta.yaml b/recipes/bioconductor-spectraltad/meta.yaml index a9e6336fb646e..b9d25d705d929 100644 --- a/recipes/bioconductor-spectraltad/meta.yaml +++ b/recipes/bioconductor-spectraltad/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1323e09936b7b05ce36f348196042062 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-spem/meta.yaml b/recipes/bioconductor-spem/meta.yaml index 8b6f048a70f35..c07803c769d42 100644 --- a/recipes/bioconductor-spem/meta.yaml +++ b/recipes/bioconductor-spem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c13851d7ae3e607c65b7c5803953bd4e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-spia/meta.yaml b/recipes/bioconductor-spia/meta.yaml index af03c3e8182c6..80ea0581a8698 100644 --- a/recipes/bioconductor-spia/meta.yaml +++ b/recipes/bioconductor-spia/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 05858d5358afe0cb844469f5241fb2d8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-spidermir/meta.yaml b/recipes/bioconductor-spidermir/meta.yaml index 7bcb454a18634..08075b686a5ee 100644 --- a/recipes/bioconductor-spidermir/meta.yaml +++ b/recipes/bioconductor-spidermir/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6103a9e30ea7b6bcad2351ebb4ed754f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,7 +22,7 @@ requirements: host: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-mirnatap >=1.18.0,<1.19.0' - - 'bioconductor-mirnatap.db >=1.0.0,<1.1.0' + - 'bioconductor-mirnatap.db >=0.99.0,<0.100.0' - 'bioconductor-org.hs.eg.db >=3.8.0,<3.9.0' - 'bioconductor-tcgabiolinks >=2.12.0,<2.13.0' - r-base @@ -39,7 +39,7 @@ requirements: run: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' - 'bioconductor-mirnatap >=1.18.0,<1.19.0' - - 'bioconductor-mirnatap.db >=1.0.0,<1.1.0' + - 'bioconductor-mirnatap.db >=0.99.0,<0.100.0' - 'bioconductor-org.hs.eg.db >=3.8.0,<3.9.0' - 'bioconductor-tcgabiolinks >=2.12.0,<2.13.0' - r-base diff --git a/recipes/bioconductor-spikein/meta.yaml b/recipes/bioconductor-spikein/meta.yaml index 91be218f2d032..70a50a4b43082 100644 --- a/recipes/bioconductor-spikein/meta.yaml +++ b/recipes/bioconductor-spikein/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3c7f3d87c555ee68feafd95a518caf1d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-spikein/post-link.sh b/recipes/bioconductor-spikein/post-link.sh index 95d6042c4cf06..923f2a4433e9d 100644 --- a/recipes/bioconductor-spikein/post-link.sh +++ b/recipes/bioconductor-spikein/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SpikeIn_1.26.0.tar.gz" "https://bioarchive.galaxyproject.org/SpikeIn_1.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-spikein/bioconductor-spikein_1.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-spikein/bioconductor-spikein_1.26.0_src_all.tar.gz" ) MD5="3c7f3d87c555ee68feafd95a518caf1d" diff --git a/recipes/bioconductor-spikeinsubset/meta.yaml b/recipes/bioconductor-spikeinsubset/meta.yaml index 0851272f9cdad..67cc6f4da8ddb 100644 --- a/recipes/bioconductor-spikeinsubset/meta.yaml +++ b/recipes/bioconductor-spikeinsubset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5b7cc17fe60a8c139f555c9ddd25eada build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-spikeinsubset/post-link.sh b/recipes/bioconductor-spikeinsubset/post-link.sh index 0c18c863499ea..9ee5d5f697fda 100644 --- a/recipes/bioconductor-spikeinsubset/post-link.sh +++ b/recipes/bioconductor-spikeinsubset/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SpikeInSubset_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/SpikeInSubset_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-spikeinsubset/bioconductor-spikeinsubset_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-spikeinsubset/bioconductor-spikeinsubset_1.24.0_src_all.tar.gz" ) MD5="5b7cc17fe60a8c139f555c9ddd25eada" diff --git a/recipes/bioconductor-spikeli/meta.yaml b/recipes/bioconductor-spikeli/meta.yaml index 469a7b5cd3cb1..2d520f8c9e95c 100644 --- a/recipes/bioconductor-spikeli/meta.yaml +++ b/recipes/bioconductor-spikeli/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e798132e48ea94e6d4b72adf02168053 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-spktools/meta.yaml b/recipes/bioconductor-spktools/meta.yaml index faccc8963c223..70e24da33cf53 100644 --- a/recipes/bioconductor-spktools/meta.yaml +++ b/recipes/bioconductor-spktools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e32f80e2fed6f1f564a83289c806d9dd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-splatter/meta.yaml b/recipes/bioconductor-splatter/meta.yaml index 9058d01d57545..1f313084c969d 100644 --- a/recipes/bioconductor-splatter/meta.yaml +++ b/recipes/bioconductor-splatter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2b0f09cff1c1378eb497050c8bf87fd6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-splicegear/meta.yaml b/recipes/bioconductor-splicegear/meta.yaml index 7d14c22b8154e..55328fc555893 100644 --- a/recipes/bioconductor-splicegear/meta.yaml +++ b/recipes/bioconductor-splicegear/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: da2235139f269f64a9d7ffbc7ef13888 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-splicesites/meta.yaml b/recipes/bioconductor-splicesites/meta.yaml index d41554ac01d74..5f40469563ea9 100644 --- a/recipes/bioconductor-splicesites/meta.yaml +++ b/recipes/bioconductor-splicesites/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 78ba99a8c7758e468e27e4d8657b5ec8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-splicinggraphs/meta.yaml b/recipes/bioconductor-splicinggraphs/meta.yaml index bfa68f0c5f7d0..3bf6729e9b7b0 100644 --- a/recipes/bioconductor-splicinggraphs/meta.yaml +++ b/recipes/bioconductor-splicinggraphs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e5aa51b3ab50aa58556e05559f6fee1e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-splinetimer/meta.yaml b/recipes/bioconductor-splinetimer/meta.yaml index 1ade160751271..c5d18f02cfca7 100644 --- a/recipes/bioconductor-splinetimer/meta.yaml +++ b/recipes/bioconductor-splinetimer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 087bdcfe5bd324e43166561b5cccae72 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-splinter/meta.yaml b/recipes/bioconductor-splinter/meta.yaml index dcda8c7552769..343202709a645 100644 --- a/recipes/bioconductor-splinter/meta.yaml +++ b/recipes/bioconductor-splinter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5c17e4a4d35dbb15fd8210289957752d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-splots/meta.yaml b/recipes/bioconductor-splots/meta.yaml index d811d908b173d..8d5be1ffc25d9 100644 --- a/recipes/bioconductor-splots/meta.yaml +++ b/recipes/bioconductor-splots/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2c8f3ef1599114a9a9dfc9827b5d72fe build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sponge/meta.yaml b/recipes/bioconductor-sponge/meta.yaml index e9b922167e6cf..9d01585886128 100644 --- a/recipes/bioconductor-sponge/meta.yaml +++ b/recipes/bioconductor-sponge/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.6.0" %} +{% set version = "1.6.1" %} {% set name = "SPONGE" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 39b24c15dcd3585f26cb43bb873f2cf5 + md5: 2b11ae03345b96eb189f7b8ea0431f71 build: number: 0 rpaths: diff --git a/recipes/bioconductor-spotsegmentation/meta.yaml b/recipes/bioconductor-spotsegmentation/meta.yaml index 735d550e87b1d..02514a8e38846 100644 --- a/recipes/bioconductor-spotsegmentation/meta.yaml +++ b/recipes/bioconductor-spotsegmentation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 893e935858ac11b3273ec21bd6906553 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-squadd/meta.yaml b/recipes/bioconductor-squadd/meta.yaml index 2570c80b177bc..08be562c84a13 100644 --- a/recipes/bioconductor-squadd/meta.yaml +++ b/recipes/bioconductor-squadd/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e285eaeca7faf352ae6240b30dff480b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sracipe/meta.yaml b/recipes/bioconductor-sracipe/meta.yaml index 9ee7cde00f2e2..875a3bdfe8bd1 100644 --- a/recipes/bioconductor-sracipe/meta.yaml +++ b/recipes/bioconductor-sracipe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4fff473e90b2561fc312ee61a5ea4423 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sradb/meta.yaml b/recipes/bioconductor-sradb/meta.yaml index 4a5d632c40644..c9d00907273fe 100644 --- a/recipes/bioconductor-sradb/meta.yaml +++ b/recipes/bioconductor-sradb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 227f399b7b8f1c93a2bd8e374da80c89 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-srap/meta.yaml b/recipes/bioconductor-srap/meta.yaml index 70cb4bb23e2fc..68b200f9410dd 100644 --- a/recipes/bioconductor-srap/meta.yaml +++ b/recipes/bioconductor-srap/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 32f1b0383bfa5e1961a3cd7550c9d7de build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-srgnet/meta.yaml b/recipes/bioconductor-srgnet/meta.yaml index 5c9d9ccfacb15..3a6386a5c3243 100644 --- a/recipes/bioconductor-srgnet/meta.yaml +++ b/recipes/bioconductor-srgnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5f5d012b47227cdcce9fb96c2afe7516 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-srnadiff/meta.yaml b/recipes/bioconductor-srnadiff/meta.yaml index 5452f1b2c17ff..20ed2e47a48ef 100644 --- a/recipes/bioconductor-srnadiff/meta.yaml +++ b/recipes/bioconductor-srnadiff/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1930356d9b2cdcb4f1ec5d7903dac725 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sscore/meta.yaml b/recipes/bioconductor-sscore/meta.yaml index 137c72dfdea56..8520c7b4ccf74 100644 --- a/recipes/bioconductor-sscore/meta.yaml +++ b/recipes/bioconductor-sscore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 254afef6aa7ebccfbfa5e8eee9bb51ed build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sscu/meta.yaml b/recipes/bioconductor-sscu/meta.yaml index f94780ce7ecf7..304c8788ef8a1 100644 --- a/recipes/bioconductor-sscu/meta.yaml +++ b/recipes/bioconductor-sscu/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8364ac315f1ff2d0a9ef8ae5d34e6660 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sseq/meta.yaml b/recipes/bioconductor-sseq/meta.yaml index 992c595c2f248..56864bce667dd 100644 --- a/recipes/bioconductor-sseq/meta.yaml +++ b/recipes/bioconductor-sseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a0cf6cbf0c4553d99b106c4024fec9cf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ssize/meta.yaml b/recipes/bioconductor-ssize/meta.yaml index 748b5ed912a1d..4bd0ce6539ce9 100644 --- a/recipes/bioconductor-ssize/meta.yaml +++ b/recipes/bioconductor-ssize/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7d17f1fdee61e0f0c017a2a2d8533404 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sspa/meta.yaml b/recipes/bioconductor-sspa/meta.yaml index c16afd873391a..b78262c0d5f7b 100644 --- a/recipes/bioconductor-sspa/meta.yaml +++ b/recipes/bioconductor-sspa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ec400994bc750810cb5652358de4d38d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ssrch/meta.yaml b/recipes/bioconductor-ssrch/meta.yaml index e70eb76423d93..4d4bfecb41b82 100644 --- a/recipes/bioconductor-ssrch/meta.yaml +++ b/recipes/bioconductor-ssrch/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 078f631b72a285cc9900365f94c53e88 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ssviz/meta.yaml b/recipes/bioconductor-ssviz/meta.yaml index db7239cf20e44..d8973786f2357 100644 --- a/recipes/bioconductor-ssviz/meta.yaml +++ b/recipes/bioconductor-ssviz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0291740010847bf4370419650591367d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stager/meta.yaml b/recipes/bioconductor-stager/meta.yaml index ca8e0d2b7f61f..852a9309cf4f3 100644 --- a/recipes/bioconductor-stager/meta.yaml +++ b/recipes/bioconductor-stager/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1b9cf571fb3a6b3853fa6ede1dcbe631 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stan/meta.yaml b/recipes/bioconductor-stan/meta.yaml index f4a807d26bbfc..2b0a197e80629 100644 --- a/recipes/bioconductor-stan/meta.yaml +++ b/recipes/bioconductor-stan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 09bb714458ce2996b7cebdd743bb78d6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-starank/meta.yaml b/recipes/bioconductor-starank/meta.yaml index 26abefcf30dda..b2aaa660490b9 100644 --- a/recipes/bioconductor-starank/meta.yaml +++ b/recipes/bioconductor-starank/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9cf9bea816f7bf9b14eb6633e685c42a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-starbiotrek/meta.yaml b/recipes/bioconductor-starbiotrek/meta.yaml index d43fbd8aa42ba..b4d7ef5f866bd 100644 --- a/recipes/bioconductor-starbiotrek/meta.yaml +++ b/recipes/bioconductor-starbiotrek/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: aad2f6de9be8593284c27883bbb0f54d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-starr/meta.yaml b/recipes/bioconductor-starr/meta.yaml index e28e49e24ce37..14a49c1ae8ac4 100644 --- a/recipes/bioconductor-starr/meta.yaml +++ b/recipes/bioconductor-starr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4ebd6e35c4fbd774b229d172c6aec891 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stategra/meta.yaml b/recipes/bioconductor-stategra/meta.yaml index e4112ed2058cd..1ecd1d90e6aa5 100644 --- a/recipes/bioconductor-stategra/meta.yaml +++ b/recipes/bioconductor-stategra/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 791f82ccec2a724a053db16fdf0de4ee build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stattarget/meta.yaml b/recipes/bioconductor-stattarget/meta.yaml index accb1bd413928..097f70b27b38b 100644 --- a/recipes/bioconductor-stattarget/meta.yaml +++ b/recipes/bioconductor-stattarget/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a1cd757f8125fb68893927e63977b32f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stemhypoxia/meta.yaml b/recipes/bioconductor-stemhypoxia/meta.yaml index 0bee4c0b5e6ab..b878f3193ab39 100644 --- a/recipes/bioconductor-stemhypoxia/meta.yaml +++ b/recipes/bioconductor-stemhypoxia/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a70572433e20a5cc9cdbac997ab05728 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stemhypoxia/post-link.sh b/recipes/bioconductor-stemhypoxia/post-link.sh index ffb6f7c0a96eb..199408ba55248 100644 --- a/recipes/bioconductor-stemhypoxia/post-link.sh +++ b/recipes/bioconductor-stemhypoxia/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/stemHypoxia_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/stemHypoxia_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-stemhypoxia/bioconductor-stemhypoxia_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-stemhypoxia/bioconductor-stemhypoxia_1.20.0_src_all.tar.gz" ) MD5="a70572433e20a5cc9cdbac997ab05728" diff --git a/recipes/bioconductor-stepnorm/meta.yaml b/recipes/bioconductor-stepnorm/meta.yaml index 796159262c615..dcecd879714bc 100644 --- a/recipes/bioconductor-stepnorm/meta.yaml +++ b/recipes/bioconductor-stepnorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 43370d0d5c7c251b3443035533114e4c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stjudem/meta.yaml b/recipes/bioconductor-stjudem/meta.yaml index b13d70861847d..1dc5077b51cf7 100644 --- a/recipes/bioconductor-stjudem/meta.yaml +++ b/recipes/bioconductor-stjudem/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 35358ac2317e7d083d373b6db1d0cbd9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stjudem/post-link.sh b/recipes/bioconductor-stjudem/post-link.sh index b80d90b9cd207..4bedd19ca12ab 100644 --- a/recipes/bioconductor-stjudem/post-link.sh +++ b/recipes/bioconductor-stjudem/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/stjudem_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/stjudem_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-stjudem/bioconductor-stjudem_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-stjudem/bioconductor-stjudem_1.24.0_src_all.tar.gz" ) MD5="35358ac2317e7d083d373b6db1d0cbd9" diff --git a/recipes/bioconductor-strandcheckr/meta.yaml b/recipes/bioconductor-strandcheckr/meta.yaml index 359ed102e5cc4..8d66d4720c0cd 100644 --- a/recipes/bioconductor-strandcheckr/meta.yaml +++ b/recipes/bioconductor-strandcheckr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e91277aa868d4dcadcab553ba630f229 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-streamer/meta.yaml b/recipes/bioconductor-streamer/meta.yaml index 88d0786602c36..7a7dce774eb43 100644 --- a/recipes/bioconductor-streamer/meta.yaml +++ b/recipes/bioconductor-streamer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 07e0a31b38c7d1bac26b07d7715800d8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stringdb/meta.yaml b/recipes/bioconductor-stringdb/meta.yaml index 81853791b5a24..4c49227858800 100644 --- a/recipes/bioconductor-stringdb/meta.yaml +++ b/recipes/bioconductor-stringdb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 852af459f0bf6827166b50f9e4c78387 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-stroma4/meta.yaml b/recipes/bioconductor-stroma4/meta.yaml index cbbfc2b40ded0..da6f935a0d79b 100644 --- a/recipes/bioconductor-stroma4/meta.yaml +++ b/recipes/bioconductor-stroma4/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d867e3054739383929d535c47366114b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-structstrings/meta.yaml b/recipes/bioconductor-structstrings/meta.yaml index b745f962cd9ae..ef05023c2332a 100644 --- a/recipes/bioconductor-structstrings/meta.yaml +++ b/recipes/bioconductor-structstrings/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.3" %} {% set name = "Structstrings" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: aa07cf516ac94026a516e03dbbe6b9b9 + md5: 9fb1eb0dcd8ee8cf8048ae23bdec79f2 build: number: 0 rpaths: diff --git a/recipes/bioconductor-structuralvariantannotation/meta.yaml b/recipes/bioconductor-structuralvariantannotation/meta.yaml index c4f0ed56ce6d4..1eb5b1c578f05 100644 --- a/recipes/bioconductor-structuralvariantannotation/meta.yaml +++ b/recipes/bioconductor-structuralvariantannotation/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c6694f42d008a2308d1cc670a12df37d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-subcellbarcode/meta.yaml b/recipes/bioconductor-subcellbarcode/meta.yaml index eece5eec2c853..e282d0f641766 100644 --- a/recipes/bioconductor-subcellbarcode/meta.yaml +++ b/recipes/bioconductor-subcellbarcode/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fbc0ec18e594e7bbaaeded98aa0a8794 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-subseq/meta.yaml b/recipes/bioconductor-subseq/meta.yaml index 1375878e66f77..a932f33c376b6 100644 --- a/recipes/bioconductor-subseq/meta.yaml +++ b/recipes/bioconductor-subseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7c8e235019360f80bfb607b98a7d95ca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sugarcanecdf/meta.yaml b/recipes/bioconductor-sugarcanecdf/meta.yaml index bad33d6440856..f5338bfe4858f 100644 --- a/recipes/bioconductor-sugarcanecdf/meta.yaml +++ b/recipes/bioconductor-sugarcanecdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f66d51868068f83d3693d3cb05be418a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sugarcaneprobe/meta.yaml b/recipes/bioconductor-sugarcaneprobe/meta.yaml index 29b4757bcae04..2d70cca647e4e 100644 --- a/recipes/bioconductor-sugarcaneprobe/meta.yaml +++ b/recipes/bioconductor-sugarcaneprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 66c101ac73e9235d258b9f996c42778e build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-summarizedbenchmark/meta.yaml b/recipes/bioconductor-summarizedbenchmark/meta.yaml index 85c44833dc147..20275976c6c90 100644 --- a/recipes/bioconductor-summarizedbenchmark/meta.yaml +++ b/recipes/bioconductor-summarizedbenchmark/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.2.0" %} +{% set version = "2.2.2" %} {% set name = "SummarizedBenchmark" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 1f582086c51cb47983e411ab5b16c139 + md5: 6960ffbe06c2b6c8c3e10e05f6f62611 build: number: 0 rpaths: diff --git a/recipes/bioconductor-summarizedexperiment/meta.yaml b/recipes/bioconductor-summarizedexperiment/meta.yaml index 29b6919489f1c..36e21de3eab95 100644 --- a/recipes/bioconductor-summarizedexperiment/meta.yaml +++ b/recipes/bioconductor-summarizedexperiment/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8bf661a8b12b424da64db8dd6e487beb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-suprahex/meta.yaml b/recipes/bioconductor-suprahex/meta.yaml index c6c4d4ed702f7..41867da03645e 100644 --- a/recipes/bioconductor-suprahex/meta.yaml +++ b/recipes/bioconductor-suprahex/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3240782128afb1c78fdc29275638d33c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-survcomp/meta.yaml b/recipes/bioconductor-survcomp/meta.yaml index aefb7875a6065..3206c7a81fe9c 100644 --- a/recipes/bioconductor-survcomp/meta.yaml +++ b/recipes/bioconductor-survcomp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 691520534d33eba80a1a36a6099d3354 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-survtype/meta.yaml b/recipes/bioconductor-survtype/meta.yaml index e12bbed1efad6..54aef232c0b40 100644 --- a/recipes/bioconductor-survtype/meta.yaml +++ b/recipes/bioconductor-survtype/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 71412d425518d026431e1e2815910a68 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sushi/meta.yaml b/recipes/bioconductor-sushi/meta.yaml index 54c536aa8d58c..654223ce84648 100644 --- a/recipes/bioconductor-sushi/meta.yaml +++ b/recipes/bioconductor-sushi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5e1d6b719a627e5376aeb07b0e59074d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-sva/meta.yaml b/recipes/bioconductor-sva/meta.yaml index bd0a270ff316e..665fda4792f83 100644 --- a/recipes/bioconductor-sva/meta.yaml +++ b/recipes/bioconductor-sva/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "3.32.0" %} +{% set version = "3.32.1" %} {% set name = "sva" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 63a2a6b9e63399130daf914f7be63edf + md5: 2386dbf4d32da63cdf95d680322b74b8 build: number: 0 rpaths: diff --git a/recipes/bioconductor-svaplsseq/meta.yaml b/recipes/bioconductor-svaplsseq/meta.yaml index 2f97ab1ed0520..808fa2f979d43 100644 --- a/recipes/bioconductor-svaplsseq/meta.yaml +++ b/recipes/bioconductor-svaplsseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 081e1b03e8e5e7cfbab31ed3e4e5e408 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-svm2crm/meta.yaml b/recipes/bioconductor-svm2crm/meta.yaml index 7afb861c5d0fa..5a4d3ba6fdf0a 100644 --- a/recipes/bioconductor-svm2crm/meta.yaml +++ b/recipes/bioconductor-svm2crm/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.15.1" %} +{% set version = "1.16.0" %} {% set name = "SVM2CRM" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 3de82245555cc7713269fbcc6a1b4de8 + md5: d1db763b5ee8b6b2c9ff611723a84725 build: number: 0 rpaths: diff --git a/recipes/bioconductor-svm2crmdata/meta.yaml b/recipes/bioconductor-svm2crmdata/meta.yaml index 2d2998662fe03..87bbaa32b3625 100644 --- a/recipes/bioconductor-svm2crmdata/meta.yaml +++ b/recipes/bioconductor-svm2crmdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 205df5b059ee9465b8d95c0ed1f6d4dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-svm2crmdata/post-link.sh b/recipes/bioconductor-svm2crmdata/post-link.sh index e3c45b1ca8abe..4b013368382f2 100644 --- a/recipes/bioconductor-svm2crmdata/post-link.sh +++ b/recipes/bioconductor-svm2crmdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/SVM2CRMdata_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/SVM2CRMdata_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-svm2crmdata/bioconductor-svm2crmdata_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-svm2crmdata/bioconductor-svm2crmdata_1.16.0_src_all.tar.gz" ) MD5="205df5b059ee9465b8d95c0ed1f6d4dc" diff --git a/recipes/bioconductor-swath2stats/meta.yaml b/recipes/bioconductor-swath2stats/meta.yaml index 7b722ade91e2a..ba2d3905e89b1 100644 --- a/recipes/bioconductor-swath2stats/meta.yaml +++ b/recipes/bioconductor-swath2stats/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 33a9b321934d71a2ea7911d029b02c38 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-swathxtend/meta.yaml b/recipes/bioconductor-swathxtend/meta.yaml index 9994fb598f731..49a48fc8d61c5 100644 --- a/recipes/bioconductor-swathxtend/meta.yaml +++ b/recipes/bioconductor-swathxtend/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4064834ca97a9aaab22e43c7c107b19a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-swfdr/meta.yaml b/recipes/bioconductor-swfdr/meta.yaml index 420f8e7459256..446d35354fa09 100644 --- a/recipes/bioconductor-swfdr/meta.yaml +++ b/recipes/bioconductor-swfdr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4e27c02e3839b79035a2c963b69e2cc3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-swimr/meta.yaml b/recipes/bioconductor-swimr/meta.yaml index c260017a1829e..b33e749482bde 100644 --- a/recipes/bioconductor-swimr/meta.yaml +++ b/recipes/bioconductor-swimr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f6e8d33f09e824b7dd8cfbac70d70245 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-switchbox/meta.yaml b/recipes/bioconductor-switchbox/meta.yaml index 69ef504566303..8a26a1e1fba30 100644 --- a/recipes/bioconductor-switchbox/meta.yaml +++ b/recipes/bioconductor-switchbox/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9485b5713f5dd142fb2fa58cb698cdae build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-switchde/meta.yaml b/recipes/bioconductor-switchde/meta.yaml index a4146d84601b5..380b275efdb2c 100644 --- a/recipes/bioconductor-switchde/meta.yaml +++ b/recipes/bioconductor-switchde/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 352c860f4f9d8494214110aedf58b29e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-synapter/meta.yaml b/recipes/bioconductor-synapter/meta.yaml index 6d18882c32f61..cedf67c2a5fe1 100644 --- a/recipes/bioconductor-synapter/meta.yaml +++ b/recipes/bioconductor-synapter/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2b64d567dd67bdcf3bdf64bac0a0e2ef build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-synapterdata/meta.yaml b/recipes/bioconductor-synapterdata/meta.yaml index 3614195823978..44f16d97cbe6e 100644 --- a/recipes/bioconductor-synapterdata/meta.yaml +++ b/recipes/bioconductor-synapterdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 65584fbc942c508d5dd722f1eebc73d7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-synapterdata/post-link.sh b/recipes/bioconductor-synapterdata/post-link.sh index a319f6c51ba11..419091b459405 100644 --- a/recipes/bioconductor-synapterdata/post-link.sh +++ b/recipes/bioconductor-synapterdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/synapterdata_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/synapterdata_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-synapterdata/bioconductor-synapterdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-synapterdata/bioconductor-synapterdata_1.22.0_src_all.tar.gz" ) MD5="65584fbc942c508d5dd722f1eebc73d7" diff --git a/recipes/bioconductor-synergyfinder/meta.yaml b/recipes/bioconductor-synergyfinder/meta.yaml index b135827e54700..342daeeb658a2 100644 --- a/recipes/bioconductor-synergyfinder/meta.yaml +++ b/recipes/bioconductor-synergyfinder/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.10.0" %} +{% set version = "1.10.2" %} {% set name = "synergyfinder" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 60dd49ac4eac7837fe54a7ec859a80ec + md5: 992f8467068362404e15d3a3c13e37c7 build: number: 0 rpaths: @@ -23,8 +23,6 @@ requirements: - r-base - 'r-drc >=2.5-12' - 'r-ggplot2 >=2.1.0' - - 'r-gplots >=3.0.0' - - 'r-gridbase >=0.4-7' - 'r-lattice >=0.20-33' - 'r-nleqslv >=3.0' - 'r-reshape2 >=1.4.1' @@ -33,8 +31,6 @@ requirements: - r-base - 'r-drc >=2.5-12' - 'r-ggplot2 >=2.1.0' - - 'r-gplots >=3.0.0' - - 'r-gridbase >=0.4-7' - 'r-lattice >=0.20-33' - 'r-nleqslv >=3.0' - 'r-reshape2 >=1.4.1' @@ -44,7 +40,7 @@ test: - '$R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' - license: 'Mozilla Public License 2.0 + file LICENSE' + license: 'Mozilla Public License 2.0' summary: 'Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.' extra: identifiers: diff --git a/recipes/bioconductor-synlet/meta.yaml b/recipes/bioconductor-synlet/meta.yaml index cefed6fe7a265..06ecff51cc2c8 100644 --- a/recipes/bioconductor-synlet/meta.yaml +++ b/recipes/bioconductor-synlet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 048ac0523519b6ae3d9ab94f22c50371 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-synmut/meta.yaml b/recipes/bioconductor-synmut/meta.yaml index 6641e9bd052e2..fe3d1333e9d75 100644 --- a/recipes/bioconductor-synmut/meta.yaml +++ b/recipes/bioconductor-synmut/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "SynMut" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 3e8d1d7acf16f8f17ee1b58df9b52e01 + md5: ee9801d0acc3ef8650a7cb8b81b9f09c build: number: 0 rpaths: diff --git a/recipes/bioconductor-systempiper/meta.yaml b/recipes/bioconductor-systempiper/meta.yaml index c399020da500e..b0992c003efad 100644 --- a/recipes/bioconductor-systempiper/meta.yaml +++ b/recipes/bioconductor-systempiper/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.2" %} {% set name = "systemPipeR" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 05db55dab25ac53beef5ed2b81c55932 + md5: a9e21a5a9f835b67175107fe6036a8b5 build: number: 0 rpaths: diff --git a/recipes/bioconductor-systempiperdata/meta.yaml b/recipes/bioconductor-systempiperdata/meta.yaml index 866a2f04a74e9..1786f6d502432 100644 --- a/recipes/bioconductor-systempiperdata/meta.yaml +++ b/recipes/bioconductor-systempiperdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c8d11c0e23f871eea5f073d749b26be0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-systempiperdata/post-link.sh b/recipes/bioconductor-systempiperdata/post-link.sh index 7872d13ebef88..9d95f54a9e597 100644 --- a/recipes/bioconductor-systempiperdata/post-link.sh +++ b/recipes/bioconductor-systempiperdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/systemPipeRdata_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/systemPipeRdata_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-systempiperdata/bioconductor-systempiperdata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-systempiperdata/bioconductor-systempiperdata_1.12.0_src_all.tar.gz" ) MD5="c8d11c0e23f871eea5f073d749b26be0" diff --git a/recipes/bioconductor-tabulamurisdata/meta.yaml b/recipes/bioconductor-tabulamurisdata/meta.yaml index 7bf514210c2d6..3ae1cabffd33a 100644 --- a/recipes/bioconductor-tabulamurisdata/meta.yaml +++ b/recipes/bioconductor-tabulamurisdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ba5ccbb99aed729f12a3805313f53cd3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tabulamurisdata/post-link.sh b/recipes/bioconductor-tabulamurisdata/post-link.sh index 00d6ddac4498a..4a33bf2c34575 100644 --- a/recipes/bioconductor-tabulamurisdata/post-link.sh +++ b/recipes/bioconductor-tabulamurisdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TabulaMurisData_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/TabulaMurisData_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tabulamurisdata/bioconductor-tabulamurisdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tabulamurisdata/bioconductor-tabulamurisdata_1.2.0_src_all.tar.gz" ) MD5="ba5ccbb99aed729f12a3805313f53cd3" diff --git a/recipes/bioconductor-targetscan.hs.eg.db/meta.yaml b/recipes/bioconductor-targetscan.hs.eg.db/meta.yaml index 3675d37c2aab1..5f2a83bda70a1 100644 --- a/recipes/bioconductor-targetscan.hs.eg.db/meta.yaml +++ b/recipes/bioconductor-targetscan.hs.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d10569315400f6c1b95ad2688632b6de build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-targetscan.mm.eg.db/meta.yaml b/recipes/bioconductor-targetscan.mm.eg.db/meta.yaml index bb2723c67a94f..41ba33eede5d5 100644 --- a/recipes/bioconductor-targetscan.mm.eg.db/meta.yaml +++ b/recipes/bioconductor-targetscan.mm.eg.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1830815c9d1383739f1ff152da0508c5 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-targetscore/meta.yaml b/recipes/bioconductor-targetscore/meta.yaml index 20d844266301a..e2b8b9a59c13a 100644 --- a/recipes/bioconductor-targetscore/meta.yaml +++ b/recipes/bioconductor-targetscore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 713b143fd0c2cfeecf59d93d412ab509 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-targetscoredata/meta.yaml b/recipes/bioconductor-targetscoredata/meta.yaml index bc0b35020e015..4aa24493729dc 100644 --- a/recipes/bioconductor-targetscoredata/meta.yaml +++ b/recipes/bioconductor-targetscoredata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: efd1b3db6b4f1ed8c3ac1ddb159a811e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-targetscoredata/post-link.sh b/recipes/bioconductor-targetscoredata/post-link.sh index efb0a22090818..c15cd87bde035 100644 --- a/recipes/bioconductor-targetscoredata/post-link.sh +++ b/recipes/bioconductor-targetscoredata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TargetScoreData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/TargetScoreData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-targetscoredata/bioconductor-targetscoredata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-targetscoredata/bioconductor-targetscoredata_1.20.0_src_all.tar.gz" ) MD5="efd1b3db6b4f1ed8c3ac1ddb159a811e" diff --git a/recipes/bioconductor-targetsearch/meta.yaml b/recipes/bioconductor-targetsearch/meta.yaml index 442552a896286..508cf78260193 100644 --- a/recipes/bioconductor-targetsearch/meta.yaml +++ b/recipes/bioconductor-targetsearch/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.40.0" %} +{% set version = "1.40.2" %} {% set name = "TargetSearch" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: c6a1de576712f6fac0b7aa82d5a85194 + md5: f93ab835d0f2cef702ae009d391f131d build: number: 0 rpaths: diff --git a/recipes/bioconductor-targetsearchdata/meta.yaml b/recipes/bioconductor-targetsearchdata/meta.yaml index d5e8fbe1fcfd4..f65b61abf8e37 100644 --- a/recipes/bioconductor-targetsearchdata/meta.yaml +++ b/recipes/bioconductor-targetsearchdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5930865598f2ac84a58a11111f3ba7ac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-targetsearchdata/post-link.sh b/recipes/bioconductor-targetsearchdata/post-link.sh index 8c2e1a951e2af..46e6c1c99f0c8 100644 --- a/recipes/bioconductor-targetsearchdata/post-link.sh +++ b/recipes/bioconductor-targetsearchdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TargetSearchData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/TargetSearchData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-targetsearchdata/bioconductor-targetsearchdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-targetsearchdata/bioconductor-targetsearchdata_1.22.0_src_all.tar.gz" ) MD5="5930865598f2ac84a58a11111f3ba7ac" diff --git a/recipes/bioconductor-tarseqqc/meta.yaml b/recipes/bioconductor-tarseqqc/meta.yaml index d488e5eb027fe..efa470ae0bf54 100644 --- a/recipes/bioconductor-tarseqqc/meta.yaml +++ b/recipes/bioconductor-tarseqqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 64224f22c12b68e8a610213a6983f260 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tbx20bamsubset/meta.yaml b/recipes/bioconductor-tbx20bamsubset/meta.yaml index d9d0b2ace403b..21db5bcbf14bc 100644 --- a/recipes/bioconductor-tbx20bamsubset/meta.yaml +++ b/recipes/bioconductor-tbx20bamsubset/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bb066042b00d5950e90ce73215301c43 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tbx20bamsubset/post-link.sh b/recipes/bioconductor-tbx20bamsubset/post-link.sh index 4f6b45092c4ce..728f1041f4773 100644 --- a/recipes/bioconductor-tbx20bamsubset/post-link.sh +++ b/recipes/bioconductor-tbx20bamsubset/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TBX20BamSubset_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/TBX20BamSubset_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tbx20bamsubset/bioconductor-tbx20bamsubset_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tbx20bamsubset/bioconductor-tbx20bamsubset_1.20.0_src_all.tar.gz" ) MD5="bb066042b00d5950e90ce73215301c43" diff --git a/recipes/bioconductor-tcc/meta.yaml b/recipes/bioconductor-tcc/meta.yaml index db3597e1806bc..dfcbd4c4d7ecb 100644 --- a/recipes/bioconductor-tcc/meta.yaml +++ b/recipes/bioconductor-tcc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fca8112eea20197cfefa1b0c2e35eb7c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgabiolinks/meta.yaml b/recipes/bioconductor-tcgabiolinks/meta.yaml index 3b6ad4e8df706..6121c7ae050fc 100644 --- a/recipes/bioconductor-tcgabiolinks/meta.yaml +++ b/recipes/bioconductor-tcgabiolinks/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.12.0" %} +{% set version = "2.12.3" %} {% set name = "TCGAbiolinks" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 75a4a5577c4bf184f71631f42eded653 + md5: 454b42e2a7021b8ee5a4c06f6487b2b2 build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: png, BiocStyle, rmarkdown, devtools, maftools, parmigene, c3net, minet, dnet, Biobase, affy, testthat, pathview, clusterProfiler, igraph, supraHex +# Suggests: jpeg, png, BiocStyle, rmarkdown, devtools, maftools, parmigene, c3net, minet, dnet, Biobase, affy, testthat, sesame, pathview, clusterProfiler, igraph, supraHex requirements: host: - 'bioconductor-biomart >=2.40.0,<2.41.0' @@ -32,7 +32,6 @@ requirements: - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - - 'bioconductor-sesame >=1.2.0,<1.3.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-sva >=3.32.0,<3.33.0' - r-base @@ -77,7 +76,6 @@ requirements: - 'bioconductor-iranges >=2.18.0,<2.19.0' - 'bioconductor-limma >=3.40.0,<3.41.0' - 'bioconductor-s4vectors >=0.22.0,<0.23.0' - - 'bioconductor-sesame >=1.2.0,<1.3.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-sva >=3.32.0,<3.33.0' - r-base diff --git a/recipes/bioconductor-tcgabiolinksgui.data/meta.yaml b/recipes/bioconductor-tcgabiolinksgui.data/meta.yaml index d78476b79667d..4980d9acde8b9 100644 --- a/recipes/bioconductor-tcgabiolinksgui.data/meta.yaml +++ b/recipes/bioconductor-tcgabiolinksgui.data/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 919f2748bfd2dab5e1b95969a4a212ae build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgabiolinksgui.data/post-link.sh b/recipes/bioconductor-tcgabiolinksgui.data/post-link.sh index 761dd81c6565d..1edc272010f69 100644 --- a/recipes/bioconductor-tcgabiolinksgui.data/post-link.sh +++ b/recipes/bioconductor-tcgabiolinksgui.data/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TCGAbiolinksGUI.data_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/TCGAbiolinksGUI.data_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tcgabiolinksgui.data/bioconductor-tcgabiolinksgui.data_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tcgabiolinksgui.data/bioconductor-tcgabiolinksgui.data_1.4.0_src_all.tar.gz" ) MD5="919f2748bfd2dab5e1b95969a4a212ae" diff --git a/recipes/bioconductor-tcgabiolinksgui/meta.yaml b/recipes/bioconductor-tcgabiolinksgui/meta.yaml index 556f8cac9aace..2dd5b307e9f09 100644 --- a/recipes/bioconductor-tcgabiolinksgui/meta.yaml +++ b/recipes/bioconductor-tcgabiolinksgui/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5659ea97fe997bdd4013460c59513a39 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgacrcmirna/meta.yaml b/recipes/bioconductor-tcgacrcmirna/meta.yaml index ef7d2aa12fbe4..b5d1b08e59d03 100644 --- a/recipes/bioconductor-tcgacrcmirna/meta.yaml +++ b/recipes/bioconductor-tcgacrcmirna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9fb98232249dc4c36f0b455b4bcbfb36 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgacrcmirna/post-link.sh b/recipes/bioconductor-tcgacrcmirna/post-link.sh index 8f3e5ef4ee95a..365bcdfe30cd6 100644 --- a/recipes/bioconductor-tcgacrcmirna/post-link.sh +++ b/recipes/bioconductor-tcgacrcmirna/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TCGAcrcmiRNA_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/TCGAcrcmiRNA_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tcgacrcmirna/bioconductor-tcgacrcmirna_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tcgacrcmirna/bioconductor-tcgacrcmirna_1.4.0_src_all.tar.gz" ) MD5="9fb98232249dc4c36f0b455b4bcbfb36" diff --git a/recipes/bioconductor-tcgacrcmrna/meta.yaml b/recipes/bioconductor-tcgacrcmrna/meta.yaml index 35d0b3449e5c5..8bbde78ae1167 100644 --- a/recipes/bioconductor-tcgacrcmrna/meta.yaml +++ b/recipes/bioconductor-tcgacrcmrna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 210ae0298467a9daaf342873ee1a9504 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgacrcmrna/post-link.sh b/recipes/bioconductor-tcgacrcmrna/post-link.sh index f7692709c430a..96c1012c76077 100644 --- a/recipes/bioconductor-tcgacrcmrna/post-link.sh +++ b/recipes/bioconductor-tcgacrcmrna/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TCGAcrcmRNA_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/TCGAcrcmRNA_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tcgacrcmrna/bioconductor-tcgacrcmrna_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tcgacrcmrna/bioconductor-tcgacrcmrna_1.4.0_src_all.tar.gz" ) MD5="210ae0298467a9daaf342873ee1a9504" diff --git a/recipes/bioconductor-tcgamethylation450k/meta.yaml b/recipes/bioconductor-tcgamethylation450k/meta.yaml index 29523916210d7..52311efa2efd9 100644 --- a/recipes/bioconductor-tcgamethylation450k/meta.yaml +++ b/recipes/bioconductor-tcgamethylation450k/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 84b02ffc29f555bdb04e40476fd86fff build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgamethylation450k/post-link.sh b/recipes/bioconductor-tcgamethylation450k/post-link.sh index 6f920df35db92..4e01875c43488 100644 --- a/recipes/bioconductor-tcgamethylation450k/post-link.sh +++ b/recipes/bioconductor-tcgamethylation450k/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TCGAMethylation450k_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/TCGAMethylation450k_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tcgamethylation450k/bioconductor-tcgamethylation450k_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tcgamethylation450k/bioconductor-tcgamethylation450k_1.20.0_src_all.tar.gz" ) MD5="84b02ffc29f555bdb04e40476fd86fff" diff --git a/recipes/bioconductor-tcgautils/meta.yaml b/recipes/bioconductor-tcgautils/meta.yaml index 4b9964a726926..7cbe4e0cd9c2e 100644 --- a/recipes/bioconductor-tcgautils/meta.yaml +++ b/recipes/bioconductor-tcgautils/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 259096a77cd358b89971bd9806f25413 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgawgbsdata.hg19/meta.yaml b/recipes/bioconductor-tcgawgbsdata.hg19/meta.yaml index e44136a9891ef..ab7d7ad5f630a 100644 --- a/recipes/bioconductor-tcgawgbsdata.hg19/meta.yaml +++ b/recipes/bioconductor-tcgawgbsdata.hg19/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0016ac6074b918439dac0a52151c4ffa build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgawgbsdata.hg19/post-link.sh b/recipes/bioconductor-tcgawgbsdata.hg19/post-link.sh index 400a7f24fa889..68f01780f6951 100644 --- a/recipes/bioconductor-tcgawgbsdata.hg19/post-link.sh +++ b/recipes/bioconductor-tcgawgbsdata.hg19/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/tcgaWGBSData.hg19_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/tcgaWGBSData.hg19_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tcgawgbsdata.hg19/bioconductor-tcgawgbsdata.hg19_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tcgawgbsdata.hg19/bioconductor-tcgawgbsdata.hg19_1.2.0_src_all.tar.gz" ) MD5="0016ac6074b918439dac0a52151c4ffa" diff --git a/recipes/bioconductor-tcgaworkflowdata/meta.yaml b/recipes/bioconductor-tcgaworkflowdata/meta.yaml index 73f6309951b3c..73b037490ee88 100644 --- a/recipes/bioconductor-tcgaworkflowdata/meta.yaml +++ b/recipes/bioconductor-tcgaworkflowdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 90d52109bd55f983c51da4ae7bc8a63c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tcgaworkflowdata/post-link.sh b/recipes/bioconductor-tcgaworkflowdata/post-link.sh index 48c0b82db795b..f29c7ba089f0c 100644 --- a/recipes/bioconductor-tcgaworkflowdata/post-link.sh +++ b/recipes/bioconductor-tcgaworkflowdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TCGAWorkflowData_1.8.0.tar.gz" "https://bioarchive.galaxyproject.org/TCGAWorkflowData_1.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tcgaworkflowdata/bioconductor-tcgaworkflowdata_1.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tcgaworkflowdata/bioconductor-tcgaworkflowdata_1.8.0_src_all.tar.gz" ) MD5="90d52109bd55f983c51da4ae7bc8a63c" diff --git a/recipes/bioconductor-tcseq/meta.yaml b/recipes/bioconductor-tcseq/meta.yaml index 88b1b1c96d873..9ae855cee8362 100644 --- a/recipes/bioconductor-tcseq/meta.yaml +++ b/recipes/bioconductor-tcseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 238ceb170a9261e3a3e8c0dcca57f072 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tdaracne/meta.yaml b/recipes/bioconductor-tdaracne/meta.yaml index dd041c2540ef5..574b97c898e23 100644 --- a/recipes/bioconductor-tdaracne/meta.yaml +++ b/recipes/bioconductor-tdaracne/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 45e12f3cf2d2301ac0e5ad0eaacb41db build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tenxbraindata/meta.yaml b/recipes/bioconductor-tenxbraindata/meta.yaml index fb0b736d027b6..b78593bf55769 100644 --- a/recipes/bioconductor-tenxbraindata/meta.yaml +++ b/recipes/bioconductor-tenxbraindata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7e6d88a566de22896659fada4fd8192b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tenxbraindata/post-link.sh b/recipes/bioconductor-tenxbraindata/post-link.sh index f568ac500c7f3..b48020af53c93 100644 --- a/recipes/bioconductor-tenxbraindata/post-link.sh +++ b/recipes/bioconductor-tenxbraindata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TENxBrainData_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/TENxBrainData_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tenxbraindata/bioconductor-tenxbraindata_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tenxbraindata/bioconductor-tenxbraindata_1.4.0_src_all.tar.gz" ) MD5="7e6d88a566de22896659fada4fd8192b" diff --git a/recipes/bioconductor-tenxpbmcdata/meta.yaml b/recipes/bioconductor-tenxpbmcdata/meta.yaml index 619c600ce9444..109415666cd78 100644 --- a/recipes/bioconductor-tenxpbmcdata/meta.yaml +++ b/recipes/bioconductor-tenxpbmcdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ffe941067700fd429028dda58bf5fc3e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tenxpbmcdata/post-link.sh b/recipes/bioconductor-tenxpbmcdata/post-link.sh index 701756a4dafad..316ba64c10cc7 100644 --- a/recipes/bioconductor-tenxpbmcdata/post-link.sh +++ b/recipes/bioconductor-tenxpbmcdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TENxPBMCData_1.2.0.tar.gz" "https://bioarchive.galaxyproject.org/TENxPBMCData_1.2.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tenxpbmcdata/bioconductor-tenxpbmcdata_1.2.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tenxpbmcdata/bioconductor-tenxpbmcdata_1.2.0_src_all.tar.gz" ) MD5="ffe941067700fd429028dda58bf5fc3e" diff --git a/recipes/bioconductor-tenxplore/meta.yaml b/recipes/bioconductor-tenxplore/meta.yaml index a867ce79953af..e2ab01dd47a32 100644 --- a/recipes/bioconductor-tenxplore/meta.yaml +++ b/recipes/bioconductor-tenxplore/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7f5c9cc74049ba207a634e77e69a785a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-teqc/meta.yaml b/recipes/bioconductor-teqc/meta.yaml index ee68b775b58ec..ea5fcc1bbccc9 100644 --- a/recipes/bioconductor-teqc/meta.yaml +++ b/recipes/bioconductor-teqc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fe0e50b70cff7c55f8f0efb0f878d168 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ternarynet/meta.yaml b/recipes/bioconductor-ternarynet/meta.yaml index ef0cba25a5339..a06e90217f779 100644 --- a/recipes/bioconductor-ternarynet/meta.yaml +++ b/recipes/bioconductor-ternarynet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ca477fd797c3c2e465d68beea471b776 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-test1cdf/meta.yaml b/recipes/bioconductor-test1cdf/meta.yaml index dee4ce899d569..e00aa6c98e891 100644 --- a/recipes/bioconductor-test1cdf/meta.yaml +++ b/recipes/bioconductor-test1cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8c94708b49ccc7bbf127485155970b9b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-test2cdf/meta.yaml b/recipes/bioconductor-test2cdf/meta.yaml index 14b9d03de6c65..2bc8629ee1c0b 100644 --- a/recipes/bioconductor-test2cdf/meta.yaml +++ b/recipes/bioconductor-test2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0d1c20d6450dfc83d62214be9dc46b5f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-test3cdf/meta.yaml b/recipes/bioconductor-test3cdf/meta.yaml index 723e28aec26ae..658d0b552ff0b 100644 --- a/recipes/bioconductor-test3cdf/meta.yaml +++ b/recipes/bioconductor-test3cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9904e7fa6599f68400a9b77d0caa159a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-test3probe/meta.yaml b/recipes/bioconductor-test3probe/meta.yaml index fc91f0f0b090c..282a1744dd176 100644 --- a/recipes/bioconductor-test3probe/meta.yaml +++ b/recipes/bioconductor-test3probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ffcbfee4e5c486fd03b2b9b64820340c build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tfarm/meta.yaml b/recipes/bioconductor-tfarm/meta.yaml index b0421afa31968..aef1bb5250efa 100644 --- a/recipes/bioconductor-tfarm/meta.yaml +++ b/recipes/bioconductor-tfarm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6f91d5a29a0274ee1344694c44f9ce21 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tfbstools/meta.yaml b/recipes/bioconductor-tfbstools/meta.yaml index eadf2ce33024d..d6087463efba1 100644 --- a/recipes/bioconductor-tfbstools/meta.yaml +++ b/recipes/bioconductor-tfbstools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 86c488ad257f26c6dfbe116bb981100f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tfea.chip/meta.yaml b/recipes/bioconductor-tfea.chip/meta.yaml index bb705469c2b94..b0380bef3bb8e 100644 --- a/recipes/bioconductor-tfea.chip/meta.yaml +++ b/recipes/bioconductor-tfea.chip/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.2" %} {% set name = "TFEA.ChIP" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: f7ece8887d78ab79c064ffeb560ad2fa + md5: 36e6d7a75937c363443e83247c428681 build: number: 0 rpaths: diff --git a/recipes/bioconductor-tfhaz/meta.yaml b/recipes/bioconductor-tfhaz/meta.yaml index 0adfb4f787caa..a941715fa6b35 100644 --- a/recipes/bioconductor-tfhaz/meta.yaml +++ b/recipes/bioconductor-tfhaz/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1d737554beb95e3dcbcf1d78a2ee6f19 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tfutils/meta.yaml b/recipes/bioconductor-tfutils/meta.yaml index 291839ae79fda..159fa14718a10 100644 --- a/recipes/bioconductor-tfutils/meta.yaml +++ b/recipes/bioconductor-tfutils/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cdde742d1336acd93fb1a2f0ed74a1d4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tigre/meta.yaml b/recipes/bioconductor-tigre/meta.yaml index 305c7bbdd43d3..a7f9fd0c3eaa3 100644 --- a/recipes/bioconductor-tigre/meta.yaml +++ b/recipes/bioconductor-tigre/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: af4ce4d96d3000ecaa64b6f65c77c023 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tilingarray/meta.yaml b/recipes/bioconductor-tilingarray/meta.yaml index f9729ca76c5a7..5d3f8cdd3dde0 100644 --- a/recipes/bioconductor-tilingarray/meta.yaml +++ b/recipes/bioconductor-tilingarray/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 963b2f24edfea1b4c6351745fdb4c697 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-timecourse/meta.yaml b/recipes/bioconductor-timecourse/meta.yaml index 152379ae6790a..d167740b47915 100644 --- a/recipes/bioconductor-timecourse/meta.yaml +++ b/recipes/bioconductor-timecourse/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3e05749c495fb39c49af5be361e4e16f build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-timerquant/meta.yaml b/recipes/bioconductor-timerquant/meta.yaml index 9ce8ec175effa..61e0ffb6347e7 100644 --- a/recipes/bioconductor-timerquant/meta.yaml +++ b/recipes/bioconductor-timerquant/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3e09837187e65aa1b4f59165a35c7df4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-timerquant/post-link.sh b/recipes/bioconductor-timerquant/post-link.sh index 6d3ea37127b10..46e7e45e2dac7 100644 --- a/recipes/bioconductor-timerquant/post-link.sh +++ b/recipes/bioconductor-timerquant/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/TimerQuant_1.14.0.tar.gz" "https://bioarchive.galaxyproject.org/TimerQuant_1.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-timerquant/bioconductor-timerquant_1.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-timerquant/bioconductor-timerquant_1.14.0_src_all.tar.gz" ) MD5="3e09837187e65aa1b4f59165a35c7df4" diff --git a/recipes/bioconductor-timescape/meta.yaml b/recipes/bioconductor-timescape/meta.yaml index 1c72c57f6d683..bc1817190a79b 100644 --- a/recipes/bioconductor-timescape/meta.yaml +++ b/recipes/bioconductor-timescape/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5ef9863c6b75dc7cab6e337e3dd8f611 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-timeseriesexperiment/meta.yaml b/recipes/bioconductor-timeseriesexperiment/meta.yaml index 9d7a94c602ecb..b27738c3a953c 100644 --- a/recipes/bioconductor-timeseriesexperiment/meta.yaml +++ b/recipes/bioconductor-timeseriesexperiment/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ff6f8001e8dbed206a226c83489b948e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tin/meta.yaml b/recipes/bioconductor-tin/meta.yaml index 29d45a6ad9ba6..dc4cb05dad1a9 100644 --- a/recipes/bioconductor-tin/meta.yaml +++ b/recipes/bioconductor-tin/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7e16046e63dfdf805d974e4d65aa2c88 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tinesath1cdf/meta.yaml b/recipes/bioconductor-tinesath1cdf/meta.yaml index 96ce1227dc458..bd2201b03714a 100644 --- a/recipes/bioconductor-tinesath1cdf/meta.yaml +++ b/recipes/bioconductor-tinesath1cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c75413e9dc533ceb727d576dfbbdac49 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tinesath1cdf/post-link.sh b/recipes/bioconductor-tinesath1cdf/post-link.sh index e6094fb752ba1..fb4b66a1d980b 100644 --- a/recipes/bioconductor-tinesath1cdf/post-link.sh +++ b/recipes/bioconductor-tinesath1cdf/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/tinesath1cdf_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/tinesath1cdf_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tinesath1cdf/bioconductor-tinesath1cdf_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tinesath1cdf/bioconductor-tinesath1cdf_1.22.0_src_all.tar.gz" ) MD5="c75413e9dc533ceb727d576dfbbdac49" diff --git a/recipes/bioconductor-tinesath1probe/meta.yaml b/recipes/bioconductor-tinesath1probe/meta.yaml index 02a3d1d29a89e..774fa3a4096ba 100644 --- a/recipes/bioconductor-tinesath1probe/meta.yaml +++ b/recipes/bioconductor-tinesath1probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6fe2994d1ed55ca9ef93b47721ea464c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tinesath1probe/post-link.sh b/recipes/bioconductor-tinesath1probe/post-link.sh index fcacaab3c785c..3f5478eb6ede5 100644 --- a/recipes/bioconductor-tinesath1probe/post-link.sh +++ b/recipes/bioconductor-tinesath1probe/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/tinesath1probe_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/tinesath1probe_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tinesath1probe/bioconductor-tinesath1probe_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tinesath1probe/bioconductor-tinesath1probe_1.22.0_src_all.tar.gz" ) MD5="6fe2994d1ed55ca9ef93b47721ea464c" diff --git a/recipes/bioconductor-tissueenrich/meta.yaml b/recipes/bioconductor-tissueenrich/meta.yaml index f7c138d6cdd59..fd4e428c568f2 100644 --- a/recipes/bioconductor-tissueenrich/meta.yaml +++ b/recipes/bioconductor-tissueenrich/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: abe2e3bea8d122818d70045a90d00ad2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tissuetreg/meta.yaml b/recipes/bioconductor-tissuetreg/meta.yaml index d3e97185d0316..8dabcd07d5f39 100644 --- a/recipes/bioconductor-tissuetreg/meta.yaml +++ b/recipes/bioconductor-tissuetreg/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3aecd23a2936c42a2abc0f292bfc4615 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tissuetreg/post-link.sh b/recipes/bioconductor-tissuetreg/post-link.sh index b6934b77a10c3..841d20687f1a5 100644 --- a/recipes/bioconductor-tissuetreg/post-link.sh +++ b/recipes/bioconductor-tissuetreg/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/tissueTreg_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/tissueTreg_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tissuetreg/bioconductor-tissuetreg_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tissuetreg/bioconductor-tissuetreg_1.4.0_src_all.tar.gz" ) MD5="3aecd23a2936c42a2abc0f292bfc4615" diff --git a/recipes/bioconductor-titancna/meta.yaml b/recipes/bioconductor-titancna/meta.yaml index 33eaad77a7eb8..fde292ecbe980 100644 --- a/recipes/bioconductor-titancna/meta.yaml +++ b/recipes/bioconductor-titancna/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cd6bd09f869c39c044d50b873d8f5dd9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tkwidgets/meta.yaml b/recipes/bioconductor-tkwidgets/meta.yaml index f6ba119806095..2b3d44f6f40ad 100644 --- a/recipes/bioconductor-tkwidgets/meta.yaml +++ b/recipes/bioconductor-tkwidgets/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 63a82dadcb462d25e62fc608eb1f9a44 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tmixclust/meta.yaml b/recipes/bioconductor-tmixclust/meta.yaml index 81ae3ec30570d..a6576510e56c0 100644 --- a/recipes/bioconductor-tmixclust/meta.yaml +++ b/recipes/bioconductor-tmixclust/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7633db1f9553d931f0efd03a8cdeeea9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tnbc.cms/meta.yaml b/recipes/bioconductor-tnbc.cms/meta.yaml index d61e36e3faebf..5d3ba1b985fc5 100644 --- a/recipes/bioconductor-tnbc.cms/meta.yaml +++ b/recipes/bioconductor-tnbc.cms/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 334ca8992244973ec79711cc248de7a6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tnt/meta.yaml b/recipes/bioconductor-tnt/meta.yaml index e6a62326dd6fe..7dea8ccb41a08 100644 --- a/recipes/bioconductor-tnt/meta.yaml +++ b/recipes/bioconductor-tnt/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 675d363f8421f4123ed82a93a774a6f7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tofsims/meta.yaml b/recipes/bioconductor-tofsims/meta.yaml index 34aef1e2aa3f8..ca40f555c1846 100644 --- a/recipes/bioconductor-tofsims/meta.yaml +++ b/recipes/bioconductor-tofsims/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c755f0f4521b6d0d6ea6e8f113be7e14 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,7 +27,6 @@ requirements: - 'r-rcpp >=0.11.2' - r-rcpparmadillo - r-signal - - openblas run: - 'bioconductor-protgenerics >=1.16.0,<1.17.0' - r-als @@ -37,7 +36,6 @@ requirements: - 'r-rcpp >=0.11.2' - r-rcpparmadillo - r-signal - - openblas build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-tofsimsdata/meta.yaml b/recipes/bioconductor-tofsimsdata/meta.yaml index c60d60d7a9ce2..4a1946c6fdab4 100644 --- a/recipes/bioconductor-tofsimsdata/meta.yaml +++ b/recipes/bioconductor-tofsimsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5d746a53346a01cbf016e711cc70bdd9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tofsimsdata/post-link.sh b/recipes/bioconductor-tofsimsdata/post-link.sh index 96523d3e21630..75ee0299ad4f9 100644 --- a/recipes/bioconductor-tofsimsdata/post-link.sh +++ b/recipes/bioconductor-tofsimsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/tofsimsData_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/tofsimsData_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tofsimsdata/bioconductor-tofsimsdata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tofsimsdata/bioconductor-tofsimsdata_1.12.0_src_all.tar.gz" ) MD5="5d746a53346a01cbf016e711cc70bdd9" diff --git a/recipes/bioconductor-tomatocdf/meta.yaml b/recipes/bioconductor-tomatocdf/meta.yaml index 8ff0fc5f157a8..0c250104501e6 100644 --- a/recipes/bioconductor-tomatocdf/meta.yaml +++ b/recipes/bioconductor-tomatocdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 200efc0637788d4bd3263fc9183c1aa6 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tomatoprobe/meta.yaml b/recipes/bioconductor-tomatoprobe/meta.yaml index 6bab60ac466d6..21e29ffa705f2 100644 --- a/recipes/bioconductor-tomatoprobe/meta.yaml +++ b/recipes/bioconductor-tomatoprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 72020469f35c19399fd0be9eaffd8e77 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-topaseq/meta.yaml b/recipes/bioconductor-topaseq/meta.yaml index 85052ce84015c..57763f471208a 100644 --- a/recipes/bioconductor-topaseq/meta.yaml +++ b/recipes/bioconductor-topaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d415cab01425acafa7e6fa5a6d04544d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-topconfects/meta.yaml b/recipes/bioconductor-topconfects/meta.yaml index abf687e732c3c..f2b23fa97802c 100644 --- a/recipes/bioconductor-topconfects/meta.yaml +++ b/recipes/bioconductor-topconfects/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ea5b0562970d893074b3f14aaf3d6275 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-topdownr/meta.yaml b/recipes/bioconductor-topdownr/meta.yaml index 45fa7d1523a59..6d8b00752b2cc 100644 --- a/recipes/bioconductor-topdownr/meta.yaml +++ b/recipes/bioconductor-topdownr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 66c9aecc5aeda8dc3ba496326e1bf899 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-topdownrdata/meta.yaml b/recipes/bioconductor-topdownrdata/meta.yaml index 51048c308e845..34456498ee2dc 100644 --- a/recipes/bioconductor-topdownrdata/meta.yaml +++ b/recipes/bioconductor-topdownrdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 4d7e386274b91c3c71ab578ee607b393 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-topdownrdata/post-link.sh b/recipes/bioconductor-topdownrdata/post-link.sh index 3fe92c61c802a..845156a32a24f 100644 --- a/recipes/bioconductor-topdownrdata/post-link.sh +++ b/recipes/bioconductor-topdownrdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/topdownrdata_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/topdownrdata_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-topdownrdata/bioconductor-topdownrdata_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-topdownrdata/bioconductor-topdownrdata_1.6.0_src_all.tar.gz" ) MD5="4d7e386274b91c3c71ab578ee607b393" diff --git a/recipes/bioconductor-topgo/meta.yaml b/recipes/bioconductor-topgo/meta.yaml index 4927e2e8bc3c9..491126159bf97 100644 --- a/recipes/bioconductor-topgo/meta.yaml +++ b/recipes/bioconductor-topgo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1f8b5fde4b87b14b275958ec40712a79 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tpp/meta.yaml b/recipes/bioconductor-tpp/meta.yaml index 0b442bfe2312a..be98e1a3cfa34 100644 --- a/recipes/bioconductor-tpp/meta.yaml +++ b/recipes/bioconductor-tpp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 79841b7f3c13fccd119c8d6d53961859 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tpp2d/meta.yaml b/recipes/bioconductor-tpp2d/meta.yaml index 5c3824132bf58..93c6bbf68ecfd 100644 --- a/recipes/bioconductor-tpp2d/meta.yaml +++ b/recipes/bioconductor-tpp2d/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 247c693ff556cb10fdd97ec017becfd0 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tracktables/meta.yaml b/recipes/bioconductor-tracktables/meta.yaml index 21f7e41412422..922e44f9ca330 100644 --- a/recipes/bioconductor-tracktables/meta.yaml +++ b/recipes/bioconductor-tracktables/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 27834eb1c38a78d2b4a18110bc8c89cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-trackviewer/meta.yaml b/recipes/bioconductor-trackviewer/meta.yaml index 6f162bb963fd6..45894fcfb8c21 100644 --- a/recipes/bioconductor-trackviewer/meta.yaml +++ b/recipes/bioconductor-trackviewer/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.20.0" %} +{% set version = "1.20.5" %} {% set name = "trackViewer" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 6d3b3a677e7eb18db075666246bad4b4 + md5: 63e812543098e53249e46415074b25b6 build: number: 0 rpaths: diff --git a/recipes/bioconductor-transcriptogramer/meta.yaml b/recipes/bioconductor-transcriptogramer/meta.yaml index 6fb355a5d160b..6c31d329f5be2 100644 --- a/recipes/bioconductor-transcriptogramer/meta.yaml +++ b/recipes/bioconductor-transcriptogramer/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a41827768111c0fd7ef4e0345d7dbd11 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -34,7 +34,6 @@ requirements: - r-progress - r-snow - r-tidyr - - openjdk 8.* run: - 'bioconductor-biomart >=2.40.0,<2.41.0' - 'bioconductor-limma >=3.40.0,<3.41.0' @@ -49,7 +48,6 @@ requirements: - r-progress - r-snow - r-tidyr - - openjdk 8.* test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-transcriptr/meta.yaml b/recipes/bioconductor-transcriptr/meta.yaml index 6bf3c5b9eb5a2..00a32fc5ba352 100644 --- a/recipes/bioconductor-transcriptr/meta.yaml +++ b/recipes/bioconductor-transcriptr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2e6fb8d3922b8fa74f382f35027e0ad5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-transite/meta.yaml b/recipes/bioconductor-transite/meta.yaml index 6a00111654221..5a9c08bc7102e 100644 --- a/recipes/bioconductor-transite/meta.yaml +++ b/recipes/bioconductor-transite/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: a639bc024ae0cbb702b2863c7825a948 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-translatome/meta.yaml b/recipes/bioconductor-translatome/meta.yaml index a1d2f5fed005d..4fb4bad53b365 100644 --- a/recipes/bioconductor-translatome/meta.yaml +++ b/recipes/bioconductor-translatome/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a134a291903997bd6feeb71756a0164b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-transview/meta.yaml b/recipes/bioconductor-transview/meta.yaml index 47a904f809754..d860e527f567b 100644 --- a/recipes/bioconductor-transview/meta.yaml +++ b/recipes/bioconductor-transview/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c572af7e22e6181d79bf7d59c3a8fe56 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-traser/meta.yaml b/recipes/bioconductor-traser/meta.yaml index ebe688a991764..53c69a3133aab 100644 --- a/recipes/bioconductor-traser/meta.yaml +++ b/recipes/bioconductor-traser/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8e936f90626d084548bd4e448de29c8a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-treeio/meta.yaml b/recipes/bioconductor-treeio/meta.yaml index dd64f21ec0cf9..2b6d20c63e2f4 100644 --- a/recipes/bioconductor-treeio/meta.yaml +++ b/recipes/bioconductor-treeio/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} {% set name = "treeio" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 5e3a23b2ce89217a8ce5a1b1ff6a13b1 + md5: b7b37244daef327a50f199209c161a1b build: number: 0 rpaths: diff --git a/recipes/bioconductor-treesummarizedexperiment/meta.yaml b/recipes/bioconductor-treesummarizedexperiment/meta.yaml index 8e2092071895b..bc93dcbe83017 100644 --- a/recipes/bioconductor-treesummarizedexperiment/meta.yaml +++ b/recipes/bioconductor-treesummarizedexperiment/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.3" %} {% set name = "TreeSummarizedExperiment" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 494e83b65a63c0d6e989ef41c36c87a6 + md5: d062e2f9f383b7bc2f17f1e69f5d79be build: number: 0 rpaths: diff --git a/recipes/bioconductor-trena/meta.yaml b/recipes/bioconductor-trena/meta.yaml index 57b76af8db6f5..e0ad889460e80 100644 --- a/recipes/bioconductor-trena/meta.yaml +++ b/recipes/bioconductor-trena/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.6.0" %} +{% set version = "1.6.1" %} {% set name = "trena" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 389c9ee53787c760bddf50a2ca5e75c4 + md5: 6693f2d6ae895070843c1a4d0547ac35 build: number: 0 rpaths: @@ -31,7 +31,7 @@ requirements: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-motifdb >=1.26.0,<1.27.0' - 'bioconductor-org.hs.eg.db >=3.8.0,<3.9.0' - - 'bioconductor-snplocs.hsapiens.dbsnp150.grch38 >=1.0.0,<1.1.0' + - 'bioconductor-snplocs.hsapiens.dbsnp150.grch38 >=0.99.0,<0.100.0' - r-base - r-dbi - r-flare @@ -54,7 +54,7 @@ requirements: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-motifdb >=1.26.0,<1.27.0' - 'bioconductor-org.hs.eg.db >=3.8.0,<3.9.0' - - 'bioconductor-snplocs.hsapiens.dbsnp150.grch38 >=1.0.0,<1.1.0' + - 'bioconductor-snplocs.hsapiens.dbsnp150.grch38 >=0.99.0,<0.100.0' - r-base - r-dbi - r-flare diff --git a/recipes/bioconductor-trendy/meta.yaml b/recipes/bioconductor-trendy/meta.yaml index 509a7b670655f..910307c8027b0 100644 --- a/recipes/bioconductor-trendy/meta.yaml +++ b/recipes/bioconductor-trendy/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.6.0" %} +{% set version = "1.6.1" %} {% set name = "Trendy" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: a19522e1b2b5bd88ab336d11d6c763ab + md5: 8eec8622b4266b00d236a80f03bbe544 build: number: 0 rpaths: diff --git a/recipes/bioconductor-triform/meta.yaml b/recipes/bioconductor-triform/meta.yaml index 63237e161a186..aa8577427d44e 100644 --- a/recipes/bioconductor-triform/meta.yaml +++ b/recipes/bioconductor-triform/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 61db5830197b876cd9d640bcd7a03f40 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-trigger/meta.yaml b/recipes/bioconductor-trigger/meta.yaml index 247441588e653..dd67e393ce0f7 100644 --- a/recipes/bioconductor-trigger/meta.yaml +++ b/recipes/bioconductor-trigger/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e9d1aef5130094557987635cbe0e2a63 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-trio/meta.yaml b/recipes/bioconductor-trio/meta.yaml index 366d1c53f224d..ebbfcba713a4d 100644 --- a/recipes/bioconductor-trio/meta.yaml +++ b/recipes/bioconductor-trio/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 05513e6f64ed404eba923616608254ff build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-triplex/meta.yaml b/recipes/bioconductor-triplex/meta.yaml index 9b595aacdac0d..71d5bd0f2a48f 100644 --- a/recipes/bioconductor-triplex/meta.yaml +++ b/recipes/bioconductor-triplex/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 28768817386594eb3fc15f0d055b8fb5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-trna/meta.yaml b/recipes/bioconductor-trna/meta.yaml index f0753549967c2..3a3c282366086 100644 --- a/recipes/bioconductor-trna/meta.yaml +++ b/recipes/bioconductor-trna/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.2" %} {% set name = "tRNA" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 83a45ddc9ece500570d3b741fa40bbe8 + md5: 89e8000afeaf7be107abbe282e7ded21 build: number: 0 rpaths: diff --git a/recipes/bioconductor-trnadbimport/meta.yaml b/recipes/bioconductor-trnadbimport/meta.yaml index 493b264810a5c..ae4dca1492b1e 100644 --- a/recipes/bioconductor-trnadbimport/meta.yaml +++ b/recipes/bioconductor-trnadbimport/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.2" %} {% set name = "tRNAdbImport" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 09d4f816f77a431b6b2e55472715751b + md5: cbc255789f5c36a6569ac0eb91f4d58f build: number: 0 rpaths: @@ -20,6 +20,7 @@ build: # Suggests: knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer requirements: host: + - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-biostrings >=2.52.0,<2.53.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' @@ -33,6 +34,7 @@ requirements: - r-stringr - r-xml2 run: + - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - 'bioconductor-biostrings >=2.52.0,<2.53.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-iranges >=2.18.0,<2.19.0' diff --git a/recipes/bioconductor-trnascanimport/meta.yaml b/recipes/bioconductor-trnascanimport/meta.yaml index 9f6f0432737ae..6c5c37788b48c 100644 --- a/recipes/bioconductor-trnascanimport/meta.yaml +++ b/recipes/bioconductor-trnascanimport/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.4.0" %} +{% set version = "1.4.2" %} {% set name = "tRNAscanImport" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: edbd752cae1ef48fe8bc58978d0654c6 + md5: 2c80878b14bdc42ddbdb2e252af1a672 build: number: 0 rpaths: diff --git a/recipes/bioconductor-tronco/meta.yaml b/recipes/bioconductor-tronco/meta.yaml index 0a8dbc02a8881..20c2e4bf9fe17 100644 --- a/recipes/bioconductor-tronco/meta.yaml +++ b/recipes/bioconductor-tronco/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.16.0" %} +{% set version = "2.16.2" %} {% set name = "TRONCO" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 9b19fee1d9d9ab3192f33f298381b57f + md5: 0a7f378f33f1d7ceec2f80b95b40e10b build: number: 0 rpaths: @@ -58,6 +58,6 @@ test: - '$R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' - license: 'file LICENSE' + license: GPL-3 summary: 'The TRONCO (TRanslational ONCOlogy) R package collects algorithms to infer progression models via the approach of Suppes-Bayes Causal Network, both from an ensemble of tumors (cross-sectional samples) and within an individual patient (multi-region or single-cell samples). The package provides parallel implementation of algorithms that process binary matrices where each row represents a tumor sample and each column a single-nucleotide or a structural variant driving the progression; a 0/1 value models the absence/presence of that alteration in the sample. The tool can import data from plain, MAF or GISTIC format files, and can fetch it from the cBioPortal for cancer genomics. Functions for data manipulation and visualization are provided, as well as functions to import/export such data to other bioinformatics tools for, e.g, clustering or detection of mutually exclusive alterations. Inferred models can be visualized and tested for their confidence via bootstrap and cross-validation. TRONCO is used for the implementation of the Pipeline for Cancer Inference (PICNIC).' diff --git a/recipes/bioconductor-tscan/meta.yaml b/recipes/bioconductor-tscan/meta.yaml index e88e54cb07335..6a8ef7a7499cb 100644 --- a/recipes/bioconductor-tscan/meta.yaml +++ b/recipes/bioconductor-tscan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 491016115994ed83297b07684af897e2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tspair/meta.yaml b/recipes/bioconductor-tspair/meta.yaml index 5c0bdbee369fa..e137742cef21f 100644 --- a/recipes/bioconductor-tspair/meta.yaml +++ b/recipes/bioconductor-tspair/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0fe6764ba9edb91989fc0d238b12dde5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tsrchitect/meta.yaml b/recipes/bioconductor-tsrchitect/meta.yaml index 55e8eccb5f7b1..9738c30fbb85c 100644 --- a/recipes/bioconductor-tsrchitect/meta.yaml +++ b/recipes/bioconductor-tsrchitect/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: f7000c0086b78c4af6366a820a25d261 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tssi/meta.yaml b/recipes/bioconductor-tssi/meta.yaml index 8cb112dc02d6d..d3a3ecd1e5140 100644 --- a/recipes/bioconductor-tssi/meta.yaml +++ b/recipes/bioconductor-tssi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e73802f58fd8a5199b7f11ec187658f4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ttmap/build.sh b/recipes/bioconductor-ttmap/build.sh index c1d13421f5f1e..d87a754453352 100644 --- a/recipes/bioconductor-ttmap/build.sh +++ b/recipes/bioconductor-ttmap/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-ttmap/meta.yaml b/recipes/bioconductor-ttmap/meta.yaml index d9efc1c0cc5c3..a2603f351dc4d 100644 --- a/recipes/bioconductor-ttmap/meta.yaml +++ b/recipes/bioconductor-ttmap/meta.yaml @@ -12,13 +12,20 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 94912c9b54264cb232dba0980ffe4c10 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ noarch: generic # Suggests: BiocStyle, airway requirements: + build: + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' @@ -33,7 +40,7 @@ requirements: - r-rgl test: commands: - - '$R -e "library(''{{ name }}'')"' + - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64" $R -e "library(''{{ name }}'')"' about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-2 diff --git a/recipes/bioconductor-turbonorm/meta.yaml b/recipes/bioconductor-turbonorm/meta.yaml index dbca347c50d16..0e653e7d34fa3 100644 --- a/recipes/bioconductor-turbonorm/meta.yaml +++ b/recipes/bioconductor-turbonorm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d06683056c54c3b734e7877a3e11f49d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tvtb/meta.yaml b/recipes/bioconductor-tvtb/meta.yaml index 17800b3b875ad..86a058742d2a1 100644 --- a/recipes/bioconductor-tvtb/meta.yaml +++ b/recipes/bioconductor-tvtb/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0de5a74af139bcc9791d456a3952c739 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tweedeseq/meta.yaml b/recipes/bioconductor-tweedeseq/meta.yaml index 130eb887c5a53..6fc90612623ea 100644 --- a/recipes/bioconductor-tweedeseq/meta.yaml +++ b/recipes/bioconductor-tweedeseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 328bd849d5545d4448815eda8d57bc55 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tweedeseqcountdata/meta.yaml b/recipes/bioconductor-tweedeseqcountdata/meta.yaml index c621e027067ae..02bad84e2b428 100644 --- a/recipes/bioconductor-tweedeseqcountdata/meta.yaml +++ b/recipes/bioconductor-tweedeseqcountdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7da122e4ba4097fa0742d460abc0b6b1 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tweedeseqcountdata/post-link.sh b/recipes/bioconductor-tweedeseqcountdata/post-link.sh index b546268bbc7e0..f8144fa65cbb7 100644 --- a/recipes/bioconductor-tweedeseqcountdata/post-link.sh +++ b/recipes/bioconductor-tweedeseqcountdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/tweeDEseqCountData_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/tweeDEseqCountData_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tweedeseqcountdata/bioconductor-tweedeseqcountdata_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tweedeseqcountdata/bioconductor-tweedeseqcountdata_1.22.0_src_all.tar.gz" ) MD5="7da122e4ba4097fa0742d460abc0b6b1" diff --git a/recipes/bioconductor-twilight/meta.yaml b/recipes/bioconductor-twilight/meta.yaml index 3052912b9d0a3..e33baf0eae4eb 100644 --- a/recipes/bioconductor-twilight/meta.yaml +++ b/recipes/bioconductor-twilight/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6d152a6e78dbd5b054dcd1a492d585c9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-twoddpcr/meta.yaml b/recipes/bioconductor-twoddpcr/meta.yaml index 826af49051ace..0c9cf5177d639 100644 --- a/recipes/bioconductor-twoddpcr/meta.yaml +++ b/recipes/bioconductor-twoddpcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 6d28c4a0a1965a0630e5a4382d97c0c8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart22/meta.yaml b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart22/meta.yaml index 1a8ecba775e76..7253536f47099 100644 --- a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart22/meta.yaml +++ b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart22/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3bab54295e300fedba99eef521220e50 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart25/meta.yaml b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart25/meta.yaml index aa1a1c6e5725b..c15dadb74a38d 100644 --- a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart25/meta.yaml +++ b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart25/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eb007c07317b9717c76949e5ed999978 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart28/meta.yaml b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart28/meta.yaml index f7bf7e8bd564d..404e3f69a0217 100644 --- a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart28/meta.yaml +++ b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart28/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 9ed52284f01e08fc382db179b544bb17 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/meta.yaml b/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/meta.yaml index 7b03fc40f3e19..39f89e4c83750 100644 --- a/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3ae01e38e8965b61a3e25ed9085718c4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/post-link.sh b/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/post-link.sh index 30c09fb867ca0..20e2b08e42894 100644 --- a/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Btaurus.UCSC.bosTau8.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Btaurus.UCSC.bosTau8.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/bioconductor-txdb.btaurus.ucsc.bostau8.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/bioconductor-txdb.btaurus.ucsc.bostau8.refgene_3.4.6_src_all.tar.gz" ) MD5="3ae01e38e8965b61a3e25ed9085718c4" diff --git a/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/meta.yaml b/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/meta.yaml index 43518e0bf5c91..32b10cea602b8 100644 --- a/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/meta.yaml +++ b/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e33a9206a35200e71aac67252fd87e02 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/post-link.sh b/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/post-link.sh index bcd4951fc882b..55ba04c49f3a6 100644 --- a/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/post-link.sh +++ b/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Celegans.UCSC.ce11.ensGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Celegans.UCSC.ce11.ensGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.celegans.ucsc.ce11.ensgene/bioconductor-txdb.celegans.ucsc.ce11.ensgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.celegans.ucsc.ce11.ensgene/bioconductor-txdb.celegans.ucsc.ce11.ensgene_3.4.6_src_all.tar.gz" ) MD5="e33a9206a35200e71aac67252fd87e02" diff --git a/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/meta.yaml b/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/meta.yaml index a6fc9e6b6c4d6..39346b8821ac3 100644 --- a/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3765169432e745aff5e85afd239066ca build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/post-link.sh b/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/post-link.sh index 322139e1533cf..78704976a2e16 100644 --- a/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Celegans.UCSC.ce11.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Celegans.UCSC.ce11.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.celegans.ucsc.ce11.refgene/bioconductor-txdb.celegans.ucsc.ce11.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.celegans.ucsc.ce11.refgene/bioconductor-txdb.celegans.ucsc.ce11.refgene_3.4.6_src_all.tar.gz" ) MD5="3765169432e745aff5e85afd239066ca" diff --git a/recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene/meta.yaml b/recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene/meta.yaml index ba29cfe5ff725..a5c48a8c18b5b 100644 --- a/recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene/meta.yaml +++ b/recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 215c2edd440a3df8229fe6a75b431aa8 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/meta.yaml b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/meta.yaml index 901dade0477ef..d5c1d0067659b 100644 --- a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 23c07a83a974b72a78871e41111def3e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/post-link.sh b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/post-link.sh index 2df5112a79fdd..8e10bbe45e9ec 100644 --- a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Cfamiliaris.UCSC.canFam3.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Cfamiliaris.UCSC.canFam3.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene_3.4.6_src_all.tar.gz" ) MD5="23c07a83a974b72a78871e41111def3e" diff --git a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene/meta.yaml b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene/meta.yaml index 98c2b105c850c..06c25a5dc9475 100644 --- a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene/meta.yaml +++ b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 46b7ffe0c516edf8a2a3b5d78e0d8b67 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/meta.yaml b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/meta.yaml index 276d5bff0381c..6d4424b98cee1 100644 --- a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/meta.yaml +++ b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3f44aee6ed70de5594d80262674c0e15 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/post-link.sh b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/post-link.sh index 70ac51af4666c..a804ec9626860 100644 --- a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/post-link.sh +++ b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene_3.4.6_src_all.tar.gz" ) MD5="3f44aee6ed70de5594d80262674c0e15" diff --git a/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/meta.yaml b/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/meta.yaml index b8ec2cee53e11..7f4a9eeac3dc1 100644 --- a/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fef9bbec3809e1b69991516988f146fb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/post-link.sh b/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/post-link.sh index a581a96d2b7e9..00441e7c88483 100644 --- a/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Drerio.UCSC.danRer10.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Drerio.UCSC.danRer10.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.drerio.ucsc.danrer10.refgene/bioconductor-txdb.drerio.ucsc.danrer10.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.drerio.ucsc.danrer10.refgene/bioconductor-txdb.drerio.ucsc.danrer10.refgene_3.4.6_src_all.tar.gz" ) MD5="fef9bbec3809e1b69991516988f146fb" diff --git a/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/meta.yaml b/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/meta.yaml index bbbc789af1f49..fa40b61b33f05 100644 --- a/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 3d4ded4cec068a807b8b86b31389b677 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/post-link.sh b/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/post-link.sh index 34e3033e66ee3..a4328dee379fb 100644 --- a/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Drerio.UCSC.danRer11.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Drerio.UCSC.danRer11.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.drerio.ucsc.danrer11.refgene/bioconductor-txdb.drerio.ucsc.danrer11.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.drerio.ucsc.danrer11.refgene/bioconductor-txdb.drerio.ucsc.danrer11.refgene_3.4.6_src_all.tar.gz" ) MD5="3d4ded4cec068a807b8b86b31389b677" diff --git a/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/meta.yaml b/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/meta.yaml index 0062802040f7b..1b3ed988e4fae 100644 --- a/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: fa3014553b93c5d97f97b5a7e2969a05 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/post-link.sh b/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/post-link.sh index 9b082b8cadd8a..1752867460079 100644 --- a/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Ggallus.UCSC.galGal4.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Ggallus.UCSC.galGal4.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/bioconductor-txdb.ggallus.ucsc.galgal4.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/bioconductor-txdb.ggallus.ucsc.galgal4.refgene_3.4.6_src_all.tar.gz" ) MD5="fa3014553b93c5d97f97b5a7e2969a05" diff --git a/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/meta.yaml b/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/meta.yaml index 2087135a8914f..98dbaf9167f82 100644 --- a/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7a232a5afd00f6dd1313f36878a1f773 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/post-link.sh b/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/post-link.sh index 53abb3e437818..a8785b74f5b99 100644 --- a/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Ggallus.UCSC.galGal5.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Ggallus.UCSC.galGal5.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/bioconductor-txdb.ggallus.ucsc.galgal5.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/bioconductor-txdb.ggallus.ucsc.galgal5.refgene_3.4.6_src_all.tar.gz" ) MD5="7a232a5afd00f6dd1313f36878a1f773" diff --git a/recipes/bioconductor-txdb.hsapiens.biomart.igis/meta.yaml b/recipes/bioconductor-txdb.hsapiens.biomart.igis/meta.yaml index 403f0f5bbe7e3..b1eb11a8bebfc 100644 --- a/recipes/bioconductor-txdb.hsapiens.biomart.igis/meta.yaml +++ b/recipes/bioconductor-txdb.hsapiens.biomart.igis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 75b793928d29bcd3f069b5986bc2cfae build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene/meta.yaml index 214ae585211e5..fe51c138904f8 100644 --- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene/meta.yaml +++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e8b32a672e87345c72bb30be73d1e2d6 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml index b0f3641ca8a45..92752e02c69c6 100644 --- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml +++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 61be88a81433958571b57d0952be48a0 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts/meta.yaml index cb0b498160b4d..c494e2689f87e 100644 --- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts/meta.yaml +++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a0d61cd90639c40b3d0bb6bdb043cf12 build: - number: 7 + number: 8 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/meta.yaml index 1de518ea0fe4a..5f2bfdd36868a 100644 --- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/meta.yaml +++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 322952c40c9ef5d9a440c8e88e8fd5bf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/post-link.sh b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/post-link.sh index 0f66a1671e046..74a3d92f3db17 100644 --- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/post-link.sh +++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg38.knownGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Hsapiens.UCSC.hg38.knownGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene_3.4.6_src_all.tar.gz" ) MD5="322952c40c9ef5d9a440c8e88e8fd5bf" diff --git a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/meta.yaml b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/meta.yaml index 6dd31348ca8ab..266534e0d2901 100644 --- a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2983fa866d080962334f200709809bce build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/post-link.sh b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/post-link.sh index 06459e0bc5ca4..328245128a3e4 100644 --- a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Mmulatta.UCSC.rheMac3.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Mmulatta.UCSC.rheMac3.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene_3.4.6_src_all.tar.gz" ) MD5="2983fa866d080962334f200709809bce" diff --git a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/meta.yaml b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/meta.yaml index 3d38101a795c2..c9e8e8cf1b647 100644 --- a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 01904f7252aab56c92e86a364a9a3fc2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/post-link.sh b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/post-link.sh index ffe5762e7ac18..32c31fe716ff2 100644 --- a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Mmulatta.UCSC.rheMac8.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Mmulatta.UCSC.rheMac8.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene_3.4.6_src_all.tar.gz" ) MD5="01904f7252aab56c92e86a364a9a3fc2" diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene/meta.yaml b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene/meta.yaml index 879c78b3a5f83..1ead06f1915b1 100644 --- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene/meta.yaml +++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 88d65b714d1f86b456aee2b8524e9d84 build: - number: 6 + number: 7 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml index eac8c168fb7b9..f37254534d6a8 100644 --- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml +++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 48ca12361578a95864fc4c59524b61e9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/post-link.sh b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/post-link.sh index 3dfd40e8c0949..6f0a1dcbc6747 100644 --- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/post-link.sh +++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Mmusculus.UCSC.mm10.knownGene_3.4.7.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Mmusculus.UCSC.mm10.knownGene_3.4.7.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene_3.4.7_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene_3.4.7_src_all.tar.gz" ) MD5="48ca12361578a95864fc4c59524b61e9" diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene/meta.yaml b/recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene/meta.yaml index 843eabcb9dc40..1fe5c1b10ab77 100644 --- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene/meta.yaml +++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cb72af039b011033477363bda8ed9104 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/meta.yaml b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/meta.yaml index fd6b4f08ff697..a23bc95083435 100644 --- a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4cc70fea8cd33576909f8729af2e9a51 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/post-link.sh b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/post-link.sh index 3d5c29db0f211..a216e0186cb51 100644 --- a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene_3.4.6_src_all.tar.gz" ) MD5="4cc70fea8cd33576909f8729af2e9a51" diff --git a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/meta.yaml b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/meta.yaml index b9b3e164647cd..cfdae1100cdc9 100644 --- a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7a56692007154b6a83b70a4c6e5a9ebb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/post-link.sh b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/post-link.sh index 540d99cab4891..bb91eaa10e431 100644 --- a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene_3.4.6_src_all.tar.gz" ) MD5="7a56692007154b6a83b70a4c6e5a9ebb" diff --git a/recipes/bioconductor-txdb.rnorvegicus.biomart.igis/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.biomart.igis/meta.yaml index fdeb3b0f869d3..d07e010a0530f 100644 --- a/recipes/bioconductor-txdb.rnorvegicus.biomart.igis/meta.yaml +++ b/recipes/bioconductor-txdb.rnorvegicus.biomart.igis/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: eaf695f63cd021074d68c76d148cdfb7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene/meta.yaml index e39b74e785ea7..b13d54e2a0ab3 100644 --- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene/meta.yaml +++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6bf2ebc522c2828c036e52b2028792c1 build: - number: 5 + number: 6 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml index 20ddcfa3e7494..bd5e2d1c4335e 100644 --- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: e525b207eab3a82450104e7349ccf5cc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/post-link.sh b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/post-link.sh index 0213ae9491fc3..dd45732365584 100644 --- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Rnorvegicus.UCSC.rn5.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Rnorvegicus.UCSC.rn5.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene_3.4.6_src_all.tar.gz" ) MD5="e525b207eab3a82450104e7349ccf5cc" diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/meta.yaml index 546bd97185a59..a716a1fd9dabb 100644 --- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ea525daa75bcf165eb24f6e93f4dbf6c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/post-link.sh b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/post-link.sh index 2f4dc5ad764f9..65fc0af34b5f9 100644 --- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Rnorvegicus.UCSC.rn6.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Rnorvegicus.UCSC.rn6.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene_3.4.6_src_all.tar.gz" ) MD5="ea525daa75bcf165eb24f6e93f4dbf6c" diff --git a/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene/meta.yaml b/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene/meta.yaml index 482690b692dac..10d27a515305b 100644 --- a/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene/meta.yaml +++ b/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ce83ef2ba6cfc69f9b4435a0a047819 build: - number: 8 + number: 9 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene/meta.yaml b/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene/meta.yaml index fcac44a69f560..d2e7941f21db1 100644 --- a/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene/meta.yaml +++ b/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: afb23b3265730b9e59c2f07ab37cc3a0 build: - number: 11 + number: 12 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/meta.yaml b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/meta.yaml index c93debdc76fd8..37421e8fbf526 100644 --- a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 21086add466ed6fff7ee756927614bb3 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/post-link.sh b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/post-link.sh index 42a041ed89e28..3d1fc0e4a1ece 100644 --- a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Sscrofa.UCSC.susScr11.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Sscrofa.UCSC.susScr11.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene_3.4.6_src_all.tar.gz" ) MD5="21086add466ed6fff7ee756927614bb3" diff --git a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/meta.yaml b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/meta.yaml index aa910773509b9..b05e7f225d276 100644 --- a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/meta.yaml +++ b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 17a9e1a37e5f3fd23f6cfb753d1ad8f2 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/post-link.sh b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/post-link.sh index ee309188b2123..664c1c69c71ff 100644 --- a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/post-link.sh +++ b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/TxDb.Sscrofa.UCSC.susScr3.refGene_3.4.6.tar.gz" "https://bioarchive.galaxyproject.org/TxDb.Sscrofa.UCSC.susScr3.refGene_3.4.6.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene_3.4.6_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene_3.4.6_src_all.tar.gz" ) MD5="17a9e1a37e5f3fd23f6cfb753d1ad8f2" diff --git a/recipes/bioconductor-tximeta/meta.yaml b/recipes/bioconductor-tximeta/meta.yaml index 5ea2d5958d0a2..7d182a87911f7 100644 --- a/recipes/bioconductor-tximeta/meta.yaml +++ b/recipes/bioconductor-tximeta/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.2" %} {% set name = "tximeta" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 446e0910bcaf29af9958373787337982 + md5: 4e8b25da25dce9808a3a324254b05928 build: number: 0 rpaths: diff --git a/recipes/bioconductor-tximport/meta.yaml b/recipes/bioconductor-tximport/meta.yaml index 6d7289473dd69..e8214cd6a9478 100644 --- a/recipes/bioconductor-tximport/meta.yaml +++ b/recipes/bioconductor-tximport/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.1" %} +{% set version = "1.12.3" %} {% set name = "tximport" %} {% set bioc = "3.9" %} @@ -10,9 +10,9 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - sha256: ba606c07c4f24e87b4abe195b47e03fe9fa93fe0787c9177d55ad4f974d808db + md5: 86fc088b3fd004d82484cd602637ea9e build: - number: 1 + number: 0 rpaths: - lib/R/lib/ - lib/ @@ -29,8 +29,7 @@ test: about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'GPL (>=2)' - license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3' - summary: 'Import and summarize transcript-level estimates for transcript and gene-level analysis' + summary: 'Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.' extra: identifiers: - biotools:tximport @@ -40,3 +39,4 @@ extra: version: 1.8.0 recipe-maintainers: - roryk + diff --git a/recipes/bioconductor-tximportdata/meta.yaml b/recipes/bioconductor-tximportdata/meta.yaml index b2fec498df164..57ca3349155bd 100644 --- a/recipes/bioconductor-tximportdata/meta.yaml +++ b/recipes/bioconductor-tximportdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 8ac5ace87e64a47a3b4c68acfd5ae976 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-tximportdata/post-link.sh b/recipes/bioconductor-tximportdata/post-link.sh index 8b553778615ce..b3a939c459d5b 100644 --- a/recipes/bioconductor-tximportdata/post-link.sh +++ b/recipes/bioconductor-tximportdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/tximportData_1.12.0.tar.gz" "https://bioarchive.galaxyproject.org/tximportData_1.12.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-tximportdata/bioconductor-tximportdata_1.12.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-tximportdata/bioconductor-tximportdata_1.12.0_src_all.tar.gz" ) MD5="8ac5ace87e64a47a3b4c68acfd5ae976" diff --git a/recipes/bioconductor-txreginfra/meta.yaml b/recipes/bioconductor-txreginfra/meta.yaml index d169337ce8366..adb0ab11b7782 100644 --- a/recipes/bioconductor-txreginfra/meta.yaml +++ b/recipes/bioconductor-txreginfra/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0a98c2779acd1d29ecd084e85045555e build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-typeinfo/meta.yaml b/recipes/bioconductor-typeinfo/meta.yaml index b2fb4029a42b2..d7c2637f40ce2 100644 --- a/recipes/bioconductor-typeinfo/meta.yaml +++ b/recipes/bioconductor-typeinfo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5bf254f161ba0b8610042a08c62c9abf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-u133aaofav2cdf/meta.yaml b/recipes/bioconductor-u133aaofav2cdf/meta.yaml index 35af78527498b..719f7af8f0b53 100644 --- a/recipes/bioconductor-u133aaofav2cdf/meta.yaml +++ b/recipes/bioconductor-u133aaofav2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 716483ddb6664b8b7f0c58cd21136e8b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-u133x3p.db/meta.yaml b/recipes/bioconductor-u133x3p.db/meta.yaml index 0fd78c18f75cc..940db383aae7f 100644 --- a/recipes/bioconductor-u133x3p.db/meta.yaml +++ b/recipes/bioconductor-u133x3p.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 1a36a09dc64b94728bf6ac75600b40c6 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-u133x3pcdf/meta.yaml b/recipes/bioconductor-u133x3pcdf/meta.yaml index d62f9b5729642..ccce35618c444 100644 --- a/recipes/bioconductor-u133x3pcdf/meta.yaml +++ b/recipes/bioconductor-u133x3pcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ee4e62041bc8c63813e8cf8400ece2f3 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-u133x3pprobe/meta.yaml b/recipes/bioconductor-u133x3pprobe/meta.yaml index 0a6add33b920f..dd0b4371e07f0 100644 --- a/recipes/bioconductor-u133x3pprobe/meta.yaml +++ b/recipes/bioconductor-u133x3pprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 81e2b00985688160805147bef0c638be build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ularcirc/meta.yaml b/recipes/bioconductor-ularcirc/meta.yaml index 6623c7949afc7..70accbcd9d599 100644 --- a/recipes/bioconductor-ularcirc/meta.yaml +++ b/recipes/bioconductor-ularcirc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: cac7eed2dd251ed7ed2ae5a9eefe40e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-undo/meta.yaml b/recipes/bioconductor-undo/meta.yaml index ccdae2e6cbfc6..aa3e176c87063 100644 --- a/recipes/bioconductor-undo/meta.yaml +++ b/recipes/bioconductor-undo/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 67d97af911e0fbcf1966e80baf739023 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-unifiedwmwqpcr/meta.yaml b/recipes/bioconductor-unifiedwmwqpcr/meta.yaml index 7b81299ecb129..73bfb8270cba0 100644 --- a/recipes/bioconductor-unifiedwmwqpcr/meta.yaml +++ b/recipes/bioconductor-unifiedwmwqpcr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a875b0d414ebd3efb3a98188424b72ad build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-uniprot.ws/meta.yaml b/recipes/bioconductor-uniprot.ws/meta.yaml index 108667800a0b2..f691fc6564b23 100644 --- a/recipes/bioconductor-uniprot.ws/meta.yaml +++ b/recipes/bioconductor-uniprot.ws/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.24.0" %} +{% set version = "2.24.1" %} {% set name = "UniProt.ws" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 665f3c1634b3d2c19375fe869d309ef2 + md5: c5617e285c45fd257e3b122afa3cc59b build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: RUnit +# Suggests: RUnit, BiocStyle, knitr requirements: host: - 'bioconductor-annotationdbi >=1.46.0,<1.47.0' diff --git a/recipes/bioconductor-uniquorn/meta.yaml b/recipes/bioconductor-uniquorn/meta.yaml index ec9d1686d5ac4..640ef96e34104 100644 --- a/recipes/bioconductor-uniquorn/meta.yaml +++ b/recipes/bioconductor-uniquorn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 5aa74d4ee015b2618a9caef436b09852 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-universalmotif/meta.yaml b/recipes/bioconductor-universalmotif/meta.yaml index bd58c97613538..1f260eb9a901b 100644 --- a/recipes/bioconductor-universalmotif/meta.yaml +++ b/recipes/bioconductor-universalmotif/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.0" %} +{% set version = "1.2.1" %} {% set name = "universalmotif" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 62377460cf3837d20a9b12e745820cb8 + md5: fba207c245cdbf2a7f4e5d76521f856c build: number: 0 rpaths: diff --git a/recipes/bioconductor-usort/meta.yaml b/recipes/bioconductor-usort/meta.yaml index 86b248e19c32b..7a4bbb137a840 100644 --- a/recipes/bioconductor-usort/meta.yaml +++ b/recipes/bioconductor-usort/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: ef09d8818585ffdd4003c1914c68e7a6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vanillaice/meta.yaml b/recipes/bioconductor-vanillaice/meta.yaml index 25a4263613daa..1ea6ad9a1e28a 100644 --- a/recipes/bioconductor-vanillaice/meta.yaml +++ b/recipes/bioconductor-vanillaice/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 696d4f2c8aae09dc6a28456bab72f843 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,7 +21,7 @@ requirements: host: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.4.0,<1.5.0' + - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0' - 'bioconductor-crlmm >=1.42.0,<1.43.0' - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' @@ -37,7 +37,7 @@ requirements: run: - 'bioconductor-biobase >=2.44.0,<2.45.0' - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' - - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.4.0,<1.5.0' + - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0' - 'bioconductor-crlmm >=1.42.0,<1.43.0' - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0' - 'bioconductor-genomicranges >=1.36.0,<1.37.0' diff --git a/recipes/bioconductor-variancepartition/meta.yaml b/recipes/bioconductor-variancepartition/meta.yaml index 164c043c3c0d1..da80a2fd50e7e 100644 --- a/recipes/bioconductor-variancepartition/meta.yaml +++ b/recipes/bioconductor-variancepartition/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: a17c9b8546466091a009e16ab7f365e4 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-variantannotation/meta.yaml b/recipes/bioconductor-variantannotation/meta.yaml index 9599f367ee80d..07840564a6cbf 100644 --- a/recipes/bioconductor-variantannotation/meta.yaml +++ b/recipes/bioconductor-variantannotation/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.30.0" %} +{% set version = "1.30.1" %} {% set name = "VariantAnnotation" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 1914705cedb8080c17960935bdb696fe + md5: f0cecd295453bba90ffede4585a6a7a7 build: number: 0 rpaths: diff --git a/recipes/bioconductor-variantfiltering/meta.yaml b/recipes/bioconductor-variantfiltering/meta.yaml index 68680da32eb04..d8b6a9447526e 100644 --- a/recipes/bioconductor-variantfiltering/meta.yaml +++ b/recipes/bioconductor-variantfiltering/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 4efa6821bd6877fc2320cbf3a6d22226 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-varianttools/meta.yaml b/recipes/bioconductor-varianttools/meta.yaml index 62f7092fc66a3..c165eb0910cfe 100644 --- a/recipes/bioconductor-varianttools/meta.yaml +++ b/recipes/bioconductor-varianttools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 85a1a309d99c466cbdc3c60748994bcc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-varianttoolsdata/meta.yaml b/recipes/bioconductor-varianttoolsdata/meta.yaml index eee43972737ee..14a3d4f14f0cd 100644 --- a/recipes/bioconductor-varianttoolsdata/meta.yaml +++ b/recipes/bioconductor-varianttoolsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: dd2739d2dc782b7ff7778010799037f9 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-varianttoolsdata/post-link.sh b/recipes/bioconductor-varianttoolsdata/post-link.sh index bf84675d1b9e7..c78acfa22efba 100644 --- a/recipes/bioconductor-varianttoolsdata/post-link.sh +++ b/recipes/bioconductor-varianttoolsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/VariantToolsData_1.8.0.tar.gz" "https://bioarchive.galaxyproject.org/VariantToolsData_1.8.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-varianttoolsdata/bioconductor-varianttoolsdata_1.8.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-varianttoolsdata/bioconductor-varianttoolsdata_1.8.0_src_all.tar.gz" ) MD5="dd2739d2dc782b7ff7778010799037f9" diff --git a/recipes/bioconductor-vbmp/meta.yaml b/recipes/bioconductor-vbmp/meta.yaml index 0c9f0f86537ed..97093f7d0867c 100644 --- a/recipes/bioconductor-vbmp/meta.yaml +++ b/recipes/bioconductor-vbmp/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 21ab3d751b86edfdda86f27a23cd01d6 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vcfarray/meta.yaml b/recipes/bioconductor-vcfarray/meta.yaml index 2af7483020c03..2ae9f539c0097 100644 --- a/recipes/bioconductor-vcfarray/meta.yaml +++ b/recipes/bioconductor-vcfarray/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.3" %} {% set name = "VCFArray" %} {% set bioc = "3.9" %} @@ -10,14 +10,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 3ad451f6746ffa7b7805da7bbbfffb7b + md5: beb3d98d0012a3f4e62050d24056263c build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: BiocStyle, BiocManager, testthat, knitr, rmarkdown +# Suggests: SeqArray, BiocStyle, BiocManager, testthat, knitr, rmarkdown requirements: host: - 'bioconductor-biocgenerics >=0.30.0,<0.31.0' diff --git a/recipes/bioconductor-vega/meta.yaml b/recipes/bioconductor-vega/meta.yaml index 1dbd4d0cad860..f3f8112f6ed7f 100644 --- a/recipes/bioconductor-vega/meta.yaml +++ b/recipes/bioconductor-vega/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d17f38e24edcd024c6650bf651fb2c13 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vegamc/meta.yaml b/recipes/bioconductor-vegamc/meta.yaml index f5b1158cd92e0..2c44f6e0d65c2 100644 --- a/recipes/bioconductor-vegamc/meta.yaml +++ b/recipes/bioconductor-vegamc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 38314360580b97f46f7cb17fc46e15a8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-venndetail/meta.yaml b/recipes/bioconductor-venndetail/meta.yaml index 7b1d4b8cb4dbe..d8d285d27bb6c 100644 --- a/recipes/bioconductor-venndetail/meta.yaml +++ b/recipes/bioconductor-venndetail/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "VennDetail" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: d24d8074ee336afe8681eb2de65b485c + md5: c794f0585849506aa4b8b2c472875fe0 build: number: 0 rpaths: @@ -22,6 +22,7 @@ requirements: host: - r-base - r-dplyr + - r-futile.logger - r-ggplot2 - r-magrittr - r-purrr @@ -31,6 +32,7 @@ requirements: run: - r-base - r-dplyr + - r-futile.logger - r-ggplot2 - r-magrittr - r-purrr diff --git a/recipes/bioconductor-vidger/meta.yaml b/recipes/bioconductor-vidger/meta.yaml index 4a955e921015d..b9aa5c6944a9d 100644 --- a/recipes/bioconductor-vidger/meta.yaml +++ b/recipes/bioconductor-vidger/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: dfcf52a1cd622ac1622d2eb2c2d34305 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-viper/meta.yaml b/recipes/bioconductor-viper/meta.yaml index f9c0007fa39dc..2460bc132590d 100644 --- a/recipes/bioconductor-viper/meta.yaml +++ b/recipes/bioconductor-viper/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.17.0" %} +{% set version = "1.18.1" %} {% set name = "viper" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: a419781099c2560cfe24b5c702e5cf0a + md5: af2670f7833502314104569352bd73b1 build: number: 0 rpaths: diff --git a/recipes/bioconductor-vitisviniferacdf/meta.yaml b/recipes/bioconductor-vitisviniferacdf/meta.yaml index 0c6447f344b34..6c9aaf25940dc 100644 --- a/recipes/bioconductor-vitisviniferacdf/meta.yaml +++ b/recipes/bioconductor-vitisviniferacdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8eb491f3ffa3ff0814f5c155787ae160 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vitisviniferaprobe/meta.yaml b/recipes/bioconductor-vitisviniferaprobe/meta.yaml index 4c817ee702f81..a86335ecb8f3a 100644 --- a/recipes/bioconductor-vitisviniferaprobe/meta.yaml +++ b/recipes/bioconductor-vitisviniferaprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 386c0d5e37896d073ac20970e88b3160 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vsn/meta.yaml b/recipes/bioconductor-vsn/meta.yaml index 1d00eb0c691b3..a751b3fe5c8b5 100644 --- a/recipes/bioconductor-vsn/meta.yaml +++ b/recipes/bioconductor-vsn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b6164fe0b1b5f91991abd9e948e2bb69 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vtpnet/meta.yaml b/recipes/bioconductor-vtpnet/meta.yaml index 441bfc95c7d97..f86087de6888c 100644 --- a/recipes/bioconductor-vtpnet/meta.yaml +++ b/recipes/bioconductor-vtpnet/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 51681bfcca401ee6ebb659675afd5773 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vulcan/meta.yaml b/recipes/bioconductor-vulcan/meta.yaml index f4f6c9e1438b5..7f103aab0bb96 100644 --- a/recipes/bioconductor-vulcan/meta.yaml +++ b/recipes/bioconductor-vulcan/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 291cee1c7a3f49263fa5d52a788e5ddf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vulcandata/meta.yaml b/recipes/bioconductor-vulcandata/meta.yaml index f9867dc8d8bc2..f62903876f6a1 100644 --- a/recipes/bioconductor-vulcandata/meta.yaml +++ b/recipes/bioconductor-vulcandata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f4b88fcd71e15eaa28291dfa423b90b5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-vulcandata/post-link.sh b/recipes/bioconductor-vulcandata/post-link.sh index 5724ba77b6095..ec2c8fa3a6b6a 100644 --- a/recipes/bioconductor-vulcandata/post-link.sh +++ b/recipes/bioconductor-vulcandata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/vulcandata_1.6.0.tar.gz" "https://bioarchive.galaxyproject.org/vulcandata_1.6.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-vulcandata/bioconductor-vulcandata_1.6.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-vulcandata/bioconductor-vulcandata_1.6.0_src_all.tar.gz" ) MD5="f4b88fcd71e15eaa28291dfa423b90b5" diff --git a/recipes/bioconductor-watermelon/meta.yaml b/recipes/bioconductor-watermelon/meta.yaml index 0d8b5a9bf99c4..306d910cd2eea 100644 --- a/recipes/bioconductor-watermelon/meta.yaml +++ b/recipes/bioconductor-watermelon/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 23f2dd01b0492239c6050e8483f3f007 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-wavcluster/meta.yaml b/recipes/bioconductor-wavcluster/meta.yaml index 16b10a3c5a482..e1985caaa73bf 100644 --- a/recipes/bioconductor-wavcluster/meta.yaml +++ b/recipes/bioconductor-wavcluster/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b592350ba78ab24461ef82372e07f26d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-wavetiling/meta.yaml b/recipes/bioconductor-wavetiling/meta.yaml index d174e59e8d335..a255b1976b042 100644 --- a/recipes/bioconductor-wavetiling/meta.yaml +++ b/recipes/bioconductor-wavetiling/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 414c7fe83b3ad0b3aca89070936e1d4c build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-wavetilingdata/meta.yaml b/recipes/bioconductor-wavetilingdata/meta.yaml index 0823919d3a7a7..1a138731784d7 100644 --- a/recipes/bioconductor-wavetilingdata/meta.yaml +++ b/recipes/bioconductor-wavetilingdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: b6a9a41570c55fa3057b879f72817f6d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-wavetilingdata/post-link.sh b/recipes/bioconductor-wavetilingdata/post-link.sh index c628435f6fa4d..25bfe32775126 100644 --- a/recipes/bioconductor-wavetilingdata/post-link.sh +++ b/recipes/bioconductor-wavetilingdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/waveTilingData_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/waveTilingData_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-wavetilingdata/bioconductor-wavetilingdata_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-wavetilingdata/bioconductor-wavetilingdata_1.20.0_src_all.tar.gz" ) MD5="b6a9a41570c55fa3057b879f72817f6d" diff --git a/recipes/bioconductor-weaver/meta.yaml b/recipes/bioconductor-weaver/meta.yaml index abf20502693a1..bde88124e9a26 100644 --- a/recipes/bioconductor-weaver/meta.yaml +++ b/recipes/bioconductor-weaver/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 50bde89ae215d49e504f77727c84af60 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-webbioc/meta.yaml b/recipes/bioconductor-webbioc/meta.yaml index b630553c953d9..904b39da46759 100644 --- a/recipes/bioconductor-webbioc/meta.yaml +++ b/recipes/bioconductor-webbioc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: c0e717b515a7a27f4371fbabd72f5147 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -29,8 +29,6 @@ requirements: - 'bioconductor-vsn >=3.52.0,<3.53.0' - r-base - r-biocmanager - - perl - - netpbm run: - 'bioconductor-affy >=1.62.0,<1.63.0' - 'bioconductor-annaffy >=1.56.0,<1.57.0' @@ -41,8 +39,6 @@ requirements: - 'bioconductor-vsn >=3.52.0,<3.53.0' - r-base - r-biocmanager - - perl - - netpbm test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-wes.1kg.wugsc/meta.yaml b/recipes/bioconductor-wes.1kg.wugsc/meta.yaml index 56e7a748e1bd6..0ac0e7a70df68 100644 --- a/recipes/bioconductor-wes.1kg.wugsc/meta.yaml +++ b/recipes/bioconductor-wes.1kg.wugsc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 6d660e6f8bddd1aa81e578e887a8712b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-wes.1kg.wugsc/post-link.sh b/recipes/bioconductor-wes.1kg.wugsc/post-link.sh index 42fbf6c6f4441..2364f60ebd8f7 100644 --- a/recipes/bioconductor-wes.1kg.wugsc/post-link.sh +++ b/recipes/bioconductor-wes.1kg.wugsc/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/WES.1KG.WUGSC_1.16.0.tar.gz" "https://bioarchive.galaxyproject.org/WES.1KG.WUGSC_1.16.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-wes.1kg.wugsc/bioconductor-wes.1kg.wugsc_1.16.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-wes.1kg.wugsc/bioconductor-wes.1kg.wugsc_1.16.0_src_all.tar.gz" ) MD5="6d660e6f8bddd1aa81e578e887a8712b" diff --git a/recipes/bioconductor-wheatcdf/meta.yaml b/recipes/bioconductor-wheatcdf/meta.yaml index fe38322cade42..9c482bf6f62b9 100644 --- a/recipes/bioconductor-wheatcdf/meta.yaml +++ b/recipes/bioconductor-wheatcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0abeeeb9700b8d93a1a83769bdd8480f build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-wheatprobe/meta.yaml b/recipes/bioconductor-wheatprobe/meta.yaml index 5f302ad851c56..023d8414da6f8 100644 --- a/recipes/bioconductor-wheatprobe/meta.yaml +++ b/recipes/bioconductor-wheatprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: b602d5050239850515be9dce12286360 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-widgettools/meta.yaml b/recipes/bioconductor-widgettools/meta.yaml index 211194bf1ea7b..9b4e99d29197c 100644 --- a/recipes/bioconductor-widgettools/meta.yaml +++ b/recipes/bioconductor-widgettools/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: bd26f959ba3f6851cb0d1ea2346bf0dd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-wiggleplotr/meta.yaml b/recipes/bioconductor-wiggleplotr/meta.yaml index 79599929bf3a8..5725a14d84767 100644 --- a/recipes/bioconductor-wiggleplotr/meta.yaml +++ b/recipes/bioconductor-wiggleplotr/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e8a1ac4ab6c1eed1878c34273ae48c02 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-worm.db0/meta.yaml b/recipes/bioconductor-worm.db0/meta.yaml index b5781827985c7..685beb5625b0f 100644 --- a/recipes/bioconductor-worm.db0/meta.yaml +++ b/recipes/bioconductor-worm.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 5975ea35d6c925bf2bfd0cdeb9b16667 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-worm.db0/post-link.sh b/recipes/bioconductor-worm.db0/post-link.sh index fd4def158606a..8926e78a4e1ec 100644 --- a/recipes/bioconductor-worm.db0/post-link.sh +++ b/recipes/bioconductor-worm.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/worm.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/worm.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-worm.db0/bioconductor-worm.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-worm.db0/bioconductor-worm.db0_3.8.2_src_all.tar.gz" ) MD5="5975ea35d6c925bf2bfd0cdeb9b16667" diff --git a/recipes/bioconductor-wrench/meta.yaml b/recipes/bioconductor-wrench/meta.yaml index cee6448ac4c0c..d55c0db14269a 100644 --- a/recipes/bioconductor-wrench/meta.yaml +++ b/recipes/bioconductor-wrench/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 088707f696c3854c4c4631811ab83130 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xbseq/meta.yaml b/recipes/bioconductor-xbseq/meta.yaml index 0770b46fb2519..b9703a5bb539a 100644 --- a/recipes/bioconductor-xbseq/meta.yaml +++ b/recipes/bioconductor-xbseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 48b45d27904653568eb5f44f98fed19a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xcms/meta.yaml b/recipes/bioconductor-xcms/meta.yaml index 2457244d08ea6..edf4e29ed823c 100644 --- a/recipes/bioconductor-xcms/meta.yaml +++ b/recipes/bioconductor-xcms/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "3.6.0" %} +{% set version = "3.6.1" %} {% set name = "xcms" %} {% set bioc = "3.9" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - md5: 38083e74761278cc928f8519d1f53f80 + md5: dd6f1b0360681874b28a612755d07518 build: number: 0 rpaths: diff --git a/recipes/bioconductor-xde/meta.yaml b/recipes/bioconductor-xde/meta.yaml index c99d102c658ed..951f044c4d37d 100644 --- a/recipes/bioconductor-xde/meta.yaml +++ b/recipes/bioconductor-xde/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1edf40b637ab430bbb22f79a1d35d1d8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xenopus.db0/meta.yaml b/recipes/bioconductor-xenopus.db0/meta.yaml index 1b1fbfdd8e2d8..9b65a8fce3b0c 100644 --- a/recipes/bioconductor-xenopus.db0/meta.yaml +++ b/recipes/bioconductor-xenopus.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 199efa5f20b5dd8fc16aaeac9f0d9eeb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xenopus.db0/post-link.sh b/recipes/bioconductor-xenopus.db0/post-link.sh index cc52ce3858b73..b6187952bc750 100644 --- a/recipes/bioconductor-xenopus.db0/post-link.sh +++ b/recipes/bioconductor-xenopus.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/xenopus.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/xenopus.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-xenopus.db0/bioconductor-xenopus.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-xenopus.db0/bioconductor-xenopus.db0_3.8.2_src_all.tar.gz" ) MD5="199efa5f20b5dd8fc16aaeac9f0d9eeb" diff --git a/recipes/bioconductor-xenopuslaeviscdf/meta.yaml b/recipes/bioconductor-xenopuslaeviscdf/meta.yaml index 59bdcac073273..52acb5fac82a9 100644 --- a/recipes/bioconductor-xenopuslaeviscdf/meta.yaml +++ b/recipes/bioconductor-xenopuslaeviscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9d09ff76471ae60faf71090e0638f240 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xenopuslaevisprobe/meta.yaml b/recipes/bioconductor-xenopuslaevisprobe/meta.yaml index 92f7b480cbad5..7d1ed9b912d60 100644 --- a/recipes/bioconductor-xenopuslaevisprobe/meta.yaml +++ b/recipes/bioconductor-xenopuslaevisprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 06a25268a5ab57bddf28bbb364ea977b build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xeva/meta.yaml b/recipes/bioconductor-xeva/meta.yaml index ea45bb985225d..583f1927c6aa1 100644 --- a/recipes/bioconductor-xeva/meta.yaml +++ b/recipes/bioconductor-xeva/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 709b12e8a7638bd2fc04e4efe5a49da7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xhybcasneuf/meta.yaml b/recipes/bioconductor-xhybcasneuf/meta.yaml index 022f39bb5692c..07d2af26e8801 100644 --- a/recipes/bioconductor-xhybcasneuf/meta.yaml +++ b/recipes/bioconductor-xhybcasneuf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 0d53ee29e521d6b33cb3dc9073970b58 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xhybcasneuf/post-link.sh b/recipes/bioconductor-xhybcasneuf/post-link.sh index d46efb248fde7..1e532aff0ab57 100644 --- a/recipes/bioconductor-xhybcasneuf/post-link.sh +++ b/recipes/bioconductor-xhybcasneuf/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/XhybCasneuf_1.22.0.tar.gz" "https://bioarchive.galaxyproject.org/XhybCasneuf_1.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-xhybcasneuf/bioconductor-xhybcasneuf_1.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-xhybcasneuf/bioconductor-xhybcasneuf_1.22.0_src_all.tar.gz" ) MD5="0d53ee29e521d6b33cb3dc9073970b58" diff --git a/recipes/bioconductor-xina/meta.yaml b/recipes/bioconductor-xina/meta.yaml index 2c499653db545..1ff99ad7150cf 100644 --- a/recipes/bioconductor-xina/meta.yaml +++ b/recipes/bioconductor-xina/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 11a837fef20ddc8e6355771f1a8b00af build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xlaevis.db/meta.yaml b/recipes/bioconductor-xlaevis.db/meta.yaml index c42d3a6b22527..09f9f130f6aad 100644 --- a/recipes/bioconductor-xlaevis.db/meta.yaml +++ b/recipes/bioconductor-xlaevis.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: deaffe47b4ee48a7edb159d8104dc241 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xlaevis2cdf/meta.yaml b/recipes/bioconductor-xlaevis2cdf/meta.yaml index 5f3336ebae204..6dce41f5d3746 100644 --- a/recipes/bioconductor-xlaevis2cdf/meta.yaml +++ b/recipes/bioconductor-xlaevis2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 9e4a80d66397299b4e66a8d6715ca4aa build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xlaevis2probe/meta.yaml b/recipes/bioconductor-xlaevis2probe/meta.yaml index c021fba5f82c6..561958342e19c 100644 --- a/recipes/bioconductor-xlaevis2probe/meta.yaml +++ b/recipes/bioconductor-xlaevis2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d86f8a05e106eb3123435da233ff851d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xmapbridge/meta.yaml b/recipes/bioconductor-xmapbridge/meta.yaml index 901c6f254020b..2b4ef86898297 100644 --- a/recipes/bioconductor-xmapbridge/meta.yaml +++ b/recipes/bioconductor-xmapbridge/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 2189c4291651059f7c79c3f563427579 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xps/build.sh b/recipes/bioconductor-xps/build.sh index c1d13421f5f1e..0b09490e290ae 100644 --- a/recipes/bioconductor-xps/build.sh +++ b/recipes/bioconductor-xps/build.sh @@ -8,4 +8,5 @@ CXX=$CXX CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars -$R CMD INSTALL --build . \ No newline at end of file +export ROOTSYS=${PREFIX} +$R CMD INSTALL --build . diff --git a/recipes/bioconductor-xps/meta.yaml b/recipes/bioconductor-xps/meta.yaml index 98073214ec76d..d64c2e3b71c8e 100644 --- a/recipes/bioconductor-xps/meta.yaml +++ b/recipes/bioconductor-xps/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 878e84b32b583d4957a8585a22adb0eb build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,10 +21,10 @@ build: requirements: host: - r-base - - root5 5.34.36 + - root5 run: - r-base - - root5 5.34.36 + - root5 build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp141.grch38/meta.yaml b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp141.grch38/meta.yaml index 562fed1fb6a46..1ccd9c2aeb5a3 100644 --- a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp141.grch38/meta.yaml +++ b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp141.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 2b9d4036b9baff400a811fd69c910cff build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml index f51801d4d2bcf..c3b4a16ab5558 100644 --- a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml +++ b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 758d024c50d2349036dc27cc689b4e5a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml index 83302f4ad1cf1..93c63532efcb2 100644 --- a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml +++ b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: c617aa805c7ecf60ee9283eb3c51b1c7 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xtropicaliscdf/meta.yaml b/recipes/bioconductor-xtropicaliscdf/meta.yaml index 534f6e0d88e35..37ecf5e25d655 100644 --- a/recipes/bioconductor-xtropicaliscdf/meta.yaml +++ b/recipes/bioconductor-xtropicaliscdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 253e3cde76a393789e124f395820e947 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xtropicalisprobe/meta.yaml b/recipes/bioconductor-xtropicalisprobe/meta.yaml index e817b02612156..8cd7c2166850f 100644 --- a/recipes/bioconductor-xtropicalisprobe/meta.yaml +++ b/recipes/bioconductor-xtropicalisprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 43d15a7e12edaec1bb5f24b87498b599 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-xvector/meta.yaml b/recipes/bioconductor-xvector/meta.yaml index dfd17df38af6e..6ebf7ccb455f1 100644 --- a/recipes/bioconductor-xvector/meta.yaml +++ b/recipes/bioconductor-xvector/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 044b4a98817641e21cf73a754f3220dc build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yamss/meta.yaml b/recipes/bioconductor-yamss/meta.yaml index 4ef2de9a01fee..380784b41e836 100644 --- a/recipes/bioconductor-yamss/meta.yaml +++ b/recipes/bioconductor-yamss/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 35ad2405c4a91122902b1e7678c11b99 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yapsa/meta.yaml b/recipes/bioconductor-yapsa/meta.yaml index 8e6a88302ed99..f40986b570536 100644 --- a/recipes/bioconductor-yapsa/meta.yaml +++ b/recipes/bioconductor-yapsa/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d87bbdd5a4d435c4ba8892bfb3d731bf build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yaqcaffy/meta.yaml b/recipes/bioconductor-yaqcaffy/meta.yaml index 1d51b5d5828a8..f55fd73d68247 100644 --- a/recipes/bioconductor-yaqcaffy/meta.yaml +++ b/recipes/bioconductor-yaqcaffy/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 13ea77a9822e21b130a92bc5ecab266b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yarn/meta.yaml b/recipes/bioconductor-yarn/meta.yaml index 48db3ba9e1ad8..012233e4a065b 100644 --- a/recipes/bioconductor-yarn/meta.yaml +++ b/recipes/bioconductor-yarn/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: d4cd04eecea5405c57a9c7d79763de11 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ye6100subacdf/meta.yaml b/recipes/bioconductor-ye6100subacdf/meta.yaml index 3fbbda573641b..50e951ce3f128 100644 --- a/recipes/bioconductor-ye6100subacdf/meta.yaml +++ b/recipes/bioconductor-ye6100subacdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 27bd71410956bfe8bffc8de14b85bdb0 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ye6100subbcdf/meta.yaml b/recipes/bioconductor-ye6100subbcdf/meta.yaml index 1696f9abbf49f..857230a7830f6 100644 --- a/recipes/bioconductor-ye6100subbcdf/meta.yaml +++ b/recipes/bioconductor-ye6100subbcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ee9ec4bd941940745bad538d79bfeab4 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ye6100subccdf/meta.yaml b/recipes/bioconductor-ye6100subccdf/meta.yaml index 488356b67c9fb..a03d4af8da7de 100644 --- a/recipes/bioconductor-ye6100subccdf/meta.yaml +++ b/recipes/bioconductor-ye6100subccdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: fcdfed29a695fe53b62bacfe13dfe0c1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ye6100subdcdf/meta.yaml b/recipes/bioconductor-ye6100subdcdf/meta.yaml index 7ccad6e8382e2..24d05763e1488 100644 --- a/recipes/bioconductor-ye6100subdcdf/meta.yaml +++ b/recipes/bioconductor-ye6100subdcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 521b501ddbcdc680c3d27b5b201029b1 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeast.db0/meta.yaml b/recipes/bioconductor-yeast.db0/meta.yaml index fc002f6000cfc..b9686cf22b3a4 100644 --- a/recipes/bioconductor-yeast.db0/meta.yaml +++ b/recipes/bioconductor-yeast.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 550cd8cf56dd2a399588a06e8dfe6677 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeast.db0/post-link.sh b/recipes/bioconductor-yeast.db0/post-link.sh index ac839cbbe4d0e..cd9d240ae2a06 100644 --- a/recipes/bioconductor-yeast.db0/post-link.sh +++ b/recipes/bioconductor-yeast.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/yeast.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/yeast.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-yeast.db0/bioconductor-yeast.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-yeast.db0/bioconductor-yeast.db0_3.8.2_src_all.tar.gz" ) MD5="550cd8cf56dd2a399588a06e8dfe6677" diff --git a/recipes/bioconductor-yeast2.db/meta.yaml b/recipes/bioconductor-yeast2.db/meta.yaml index 56201dc3b92ec..fb4396000306e 100644 --- a/recipes/bioconductor-yeast2.db/meta.yaml +++ b/recipes/bioconductor-yeast2.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 818981b9562630e8a219dbe23a316e08 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeast2cdf/meta.yaml b/recipes/bioconductor-yeast2cdf/meta.yaml index 6b6c77f895710..e29b57517c5f2 100644 --- a/recipes/bioconductor-yeast2cdf/meta.yaml +++ b/recipes/bioconductor-yeast2cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0a718d78ae56bef9bad8168123038ac8 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeast2probe/meta.yaml b/recipes/bioconductor-yeast2probe/meta.yaml index fed961d0cd38a..ee3b2e72aa5a2 100644 --- a/recipes/bioconductor-yeast2probe/meta.yaml +++ b/recipes/bioconductor-yeast2probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 3f52a2b7bd379624bc2966ca28c9ddf9 build: - number: 2 + number: 3 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeastcc/meta.yaml b/recipes/bioconductor-yeastcc/meta.yaml index 0877c5699f589..a0ac7ffeb26d8 100644 --- a/recipes/bioconductor-yeastcc/meta.yaml +++ b/recipes/bioconductor-yeastcc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 55504ef44f97f3cf418c6817f9884538 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeastcc/post-link.sh b/recipes/bioconductor-yeastcc/post-link.sh index 86e54185cb9c5..8d46c7164bb21 100644 --- a/recipes/bioconductor-yeastcc/post-link.sh +++ b/recipes/bioconductor-yeastcc/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/yeastCC_1.24.0.tar.gz" "https://bioarchive.galaxyproject.org/yeastCC_1.24.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-yeastcc/bioconductor-yeastcc_1.24.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-yeastcc/bioconductor-yeastcc_1.24.0_src_all.tar.gz" ) MD5="55504ef44f97f3cf418c6817f9884538" diff --git a/recipes/bioconductor-yeastexpdata/meta.yaml b/recipes/bioconductor-yeastexpdata/meta.yaml index 36fc8525b9435..2b654a0ace34d 100644 --- a/recipes/bioconductor-yeastexpdata/meta.yaml +++ b/recipes/bioconductor-yeastexpdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 92da053cb8de00d3e1bbf897491b8177 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeastexpdata/post-link.sh b/recipes/bioconductor-yeastexpdata/post-link.sh index a4008dfac8468..deb64cd87a42d 100644 --- a/recipes/bioconductor-yeastexpdata/post-link.sh +++ b/recipes/bioconductor-yeastexpdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/yeastExpData_0.30.0.tar.gz" "https://bioarchive.galaxyproject.org/yeastExpData_0.30.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-yeastexpdata/bioconductor-yeastexpdata_0.30.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-yeastexpdata/bioconductor-yeastexpdata_0.30.0_src_all.tar.gz" ) MD5="92da053cb8de00d3e1bbf897491b8177" diff --git a/recipes/bioconductor-yeastgsdata/meta.yaml b/recipes/bioconductor-yeastgsdata/meta.yaml index e06707a1a0a61..dc81e06f0ed40 100644 --- a/recipes/bioconductor-yeastgsdata/meta.yaml +++ b/recipes/bioconductor-yeastgsdata/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 76b11f991c186a0141182b94668dfb70 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeastgsdata/post-link.sh b/recipes/bioconductor-yeastgsdata/post-link.sh index 608323e8e4c66..7bba39802f8cb 100644 --- a/recipes/bioconductor-yeastgsdata/post-link.sh +++ b/recipes/bioconductor-yeastgsdata/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/yeastGSData_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/yeastGSData_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-yeastgsdata/bioconductor-yeastgsdata_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-yeastgsdata/bioconductor-yeastgsdata_0.22.0_src_all.tar.gz" ) MD5="76b11f991c186a0141182b94668dfb70" diff --git a/recipes/bioconductor-yeastnagalakshmi/meta.yaml b/recipes/bioconductor-yeastnagalakshmi/meta.yaml index eba9d192f9af6..b23e22eee661c 100644 --- a/recipes/bioconductor-yeastnagalakshmi/meta.yaml +++ b/recipes/bioconductor-yeastnagalakshmi/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 756b38f28259e1a99dec46e80bd64646 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeastnagalakshmi/post-link.sh b/recipes/bioconductor-yeastnagalakshmi/post-link.sh index 4269f1355651c..eb14688851faa 100644 --- a/recipes/bioconductor-yeastnagalakshmi/post-link.sh +++ b/recipes/bioconductor-yeastnagalakshmi/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/yeastNagalakshmi_1.20.0.tar.gz" "https://bioarchive.galaxyproject.org/yeastNagalakshmi_1.20.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-yeastnagalakshmi/bioconductor-yeastnagalakshmi_1.20.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-yeastnagalakshmi/bioconductor-yeastnagalakshmi_1.20.0_src_all.tar.gz" ) MD5="756b38f28259e1a99dec46e80bd64646" diff --git a/recipes/bioconductor-yeastrnaseq/meta.yaml b/recipes/bioconductor-yeastrnaseq/meta.yaml index 5f461c76ffc67..d04765079698e 100644 --- a/recipes/bioconductor-yeastrnaseq/meta.yaml +++ b/recipes/bioconductor-yeastrnaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: d49325eb63e76bea71a4e26d08e877ac build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yeastrnaseq/post-link.sh b/recipes/bioconductor-yeastrnaseq/post-link.sh index 20a662cad151d..4f1db1d0937c5 100644 --- a/recipes/bioconductor-yeastrnaseq/post-link.sh +++ b/recipes/bioconductor-yeastrnaseq/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/yeastRNASeq_0.22.0.tar.gz" "https://bioarchive.galaxyproject.org/yeastRNASeq_0.22.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-yeastrnaseq/bioconductor-yeastrnaseq_0.22.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-yeastrnaseq/bioconductor-yeastrnaseq_0.22.0_src_all.tar.gz" ) MD5="d49325eb63e76bea71a4e26d08e877ac" diff --git a/recipes/bioconductor-ygs98.db/meta.yaml b/recipes/bioconductor-ygs98.db/meta.yaml index 52239101829be..c4ddc28602702 100644 --- a/recipes/bioconductor-ygs98.db/meta.yaml +++ b/recipes/bioconductor-ygs98.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ddbf44a3db85a114be4477f917f3a724 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ygs98cdf/meta.yaml b/recipes/bioconductor-ygs98cdf/meta.yaml index 26a4997f55420..8f9b259de18d1 100644 --- a/recipes/bioconductor-ygs98cdf/meta.yaml +++ b/recipes/bioconductor-ygs98cdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: ec7df7564cf28e093646325ec55baf1e build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ygs98frmavecs/meta.yaml b/recipes/bioconductor-ygs98frmavecs/meta.yaml index 0b3f9f4327dbe..8601c59f06be9 100644 --- a/recipes/bioconductor-ygs98frmavecs/meta.yaml +++ b/recipes/bioconductor-ygs98frmavecs/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: e78c8447eb381b91dafb2f9688da39dc build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-ygs98probe/meta.yaml b/recipes/bioconductor-ygs98probe/meta.yaml index 70b2ccac22041..a98cd7938fa47 100644 --- a/recipes/bioconductor-ygs98probe/meta.yaml +++ b/recipes/bioconductor-ygs98probe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: f40f21d7074818a4ee74a45b5533e89d build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yri1kgv/meta.yaml b/recipes/bioconductor-yri1kgv/meta.yaml index 8c4885f5a7686..bb0512e997ffa 100644 --- a/recipes/bioconductor-yri1kgv/meta.yaml +++ b/recipes/bioconductor-yri1kgv/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 323d8f0ad9c359b2acf16f7802c5efdd build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-yri1kgv/post-link.sh b/recipes/bioconductor-yri1kgv/post-link.sh index d7ab3eb0e8f61..64aa34be4896d 100644 --- a/recipes/bioconductor-yri1kgv/post-link.sh +++ b/recipes/bioconductor-yri1kgv/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/yri1kgv_0.26.0.tar.gz" "https://bioarchive.galaxyproject.org/yri1kgv_0.26.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-yri1kgv/bioconductor-yri1kgv_0.26.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-yri1kgv/bioconductor-yri1kgv_0.26.0_src_all.tar.gz" ) MD5="323d8f0ad9c359b2acf16f7802c5efdd" diff --git a/recipes/bioconductor-yrimulti/meta.yaml b/recipes/bioconductor-yrimulti/meta.yaml index 6e8c92b518b60..ac8c54d8cdf83 100644 --- a/recipes/bioconductor-yrimulti/meta.yaml +++ b/recipes/bioconductor-yrimulti/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 7701a6d945562afbfed3d9c4f620ef89 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -26,7 +26,7 @@ requirements: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-geuvpack >=1.16.0,<1.17.0' - 'bioconductor-gqtlbase >=1.16.0,<1.17.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-multiassayexperiment >=1.10.0,<1.11.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' @@ -38,7 +38,7 @@ requirements: - 'bioconductor-genomicranges >=1.36.0,<1.37.0' - 'bioconductor-geuvpack >=1.16.0,<1.17.0' - 'bioconductor-gqtlbase >=1.16.0,<1.17.0' - - 'bioconductor-homo.sapiens >=1.4.0,<1.5.0' + - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0' - 'bioconductor-multiassayexperiment >=1.10.0,<1.11.0' - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0' - 'bioconductor-variantannotation >=1.30.0,<1.31.0' diff --git a/recipes/bioconductor-yrimulti/post-link.sh b/recipes/bioconductor-yrimulti/post-link.sh index 1624a755a6c03..d40d521066351 100644 --- a/recipes/bioconductor-yrimulti/post-link.sh +++ b/recipes/bioconductor-yrimulti/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/yriMulti_0.14.0.tar.gz" "https://bioarchive.galaxyproject.org/yriMulti_0.14.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-yrimulti/bioconductor-yrimulti_0.14.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-yrimulti/bioconductor-yrimulti_0.14.0_src_all.tar.gz" ) MD5="7701a6d945562afbfed3d9c4f620ef89" diff --git a/recipes/bioconductor-zebrafish.db/meta.yaml b/recipes/bioconductor-zebrafish.db/meta.yaml index 343f1a10ecac0..13df8c9c8b322 100644 --- a/recipes/bioconductor-zebrafish.db/meta.yaml +++ b/recipes/bioconductor-zebrafish.db/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: bd3924751e782a01b08d82b0aae07579 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-zebrafish.db0/meta.yaml b/recipes/bioconductor-zebrafish.db0/meta.yaml index 403499b9e000f..deb01d5bfe08c 100644 --- a/recipes/bioconductor-zebrafish.db0/meta.yaml +++ b/recipes/bioconductor-zebrafish.db0/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 0fcbb88a589acd7b0ed8b07f6d455477 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-zebrafish.db0/post-link.sh b/recipes/bioconductor-zebrafish.db0/post-link.sh index 05bd7700943d8..81d5b3643d171 100644 --- a/recipes/bioconductor-zebrafish.db0/post-link.sh +++ b/recipes/bioconductor-zebrafish.db0/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/annotation/src/contrib/zebrafish.db0_3.8.2.tar.gz" "https://bioarchive.galaxyproject.org/zebrafish.db0_3.8.2.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-zebrafish.db0/bioconductor-zebrafish.db0_3.8.2_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-zebrafish.db0/bioconductor-zebrafish.db0_3.8.2_src_all.tar.gz" ) MD5="0fcbb88a589acd7b0ed8b07f6d455477" diff --git a/recipes/bioconductor-zebrafishcdf/meta.yaml b/recipes/bioconductor-zebrafishcdf/meta.yaml index 321c1eae1eb65..de83c3c6de52b 100644 --- a/recipes/bioconductor-zebrafishcdf/meta.yaml +++ b/recipes/bioconductor-zebrafishcdf/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 04edbb632600c97610b86423c2d850e7 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-zebrafishprobe/meta.yaml b/recipes/bioconductor-zebrafishprobe/meta.yaml index 20a0f305ac8d3..b14078131d571 100644 --- a/recipes/bioconductor-zebrafishprobe/meta.yaml +++ b/recipes/bioconductor-zebrafishprobe/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: eea2747859afa763addc7313ab0a2452 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-zebrafishrnaseq/meta.yaml b/recipes/bioconductor-zebrafishrnaseq/meta.yaml index 40e9f9ffa686f..8fd074d8458e3 100644 --- a/recipes/bioconductor-zebrafishrnaseq/meta.yaml +++ b/recipes/bioconductor-zebrafishrnaseq/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: de296bfd0e03bcb980519bb70371b65b build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-zebrafishrnaseq/post-link.sh b/recipes/bioconductor-zebrafishrnaseq/post-link.sh index 5c9269ba7c415..af9d0da8c3461 100644 --- a/recipes/bioconductor-zebrafishrnaseq/post-link.sh +++ b/recipes/bioconductor-zebrafishrnaseq/post-link.sh @@ -4,6 +4,7 @@ URLS=( "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/zebrafishRNASeq_1.4.0.tar.gz" "https://bioarchive.galaxyproject.org/zebrafishRNASeq_1.4.0.tar.gz" "https://depot.galaxyproject.org/software/bioconductor-zebrafishrnaseq/bioconductor-zebrafishrnaseq_1.4.0_src_all.tar.gz" + "https://depot.galaxyproject.org/software/bioconductor-zebrafishrnaseq/bioconductor-zebrafishrnaseq_1.4.0_src_all.tar.gz" ) MD5="de296bfd0e03bcb980519bb70371b65b" diff --git a/recipes/bioconductor-zfpkm/meta.yaml b/recipes/bioconductor-zfpkm/meta.yaml index 4724aaccb7408..8c03f92b5413d 100644 --- a/recipes/bioconductor-zfpkm/meta.yaml +++ b/recipes/bioconductor-zfpkm/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' md5: 1c309bf1b7bf6f1a32df581d3543b068 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-zinbwave/meta.yaml b/recipes/bioconductor-zinbwave/meta.yaml index a06caca0d9c65..71d642c3fc547 100644 --- a/recipes/bioconductor-zinbwave/meta.yaml +++ b/recipes/bioconductor-zinbwave/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 7031ddba832cffbed304c94c692c2d9d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-zlibbioc/meta.yaml b/recipes/bioconductor-zlibbioc/meta.yaml index 64ff4c399021c..86b2e38d732bc 100644 --- a/recipes/bioconductor-zlibbioc/meta.yaml +++ b/recipes/bioconductor-zlibbioc/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' md5: 8e2b5b596ee4d13aca3e195724d28209 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/cannoli/meta.yaml b/recipes/cannoli/meta.yaml index 9da1a2de4fea6..5890c0ddd7a19 100644 --- a/recipes/cannoli/meta.yaml +++ b/recipes/cannoli/meta.yaml @@ -12,6 +12,10 @@ build: number: 0 noarch: generic +build: + number: 1 + noarch: generic + requirements: run: - openjdk >=8,<9 diff --git a/recipes/dsh-bio/meta.yaml b/recipes/dsh-bio/meta.yaml index b55cee35128e1..01c5a6ca34fff 100644 --- a/recipes/dsh-bio/meta.yaml +++ b/recipes/dsh-bio/meta.yaml @@ -12,6 +12,10 @@ build: number: 0 noarch: generic +build: + number: 1 + noarch: generic + requirements: run: - openjdk >=8 diff --git a/recipes/ete3/build.sh b/recipes/ete3/build.sh deleted file mode 100644 index 89481145a5291..0000000000000 --- a/recipes/ete3/build.sh +++ /dev/null @@ -1,2 +0,0 @@ -#!/bin/bash -$PYTHON setup.py install --single-version-externally-managed --record=record.txt diff --git a/recipes/ete3/meta.yaml b/recipes/ete3/meta.yaml deleted file mode 100644 index 6b92585025e81..0000000000000 --- a/recipes/ete3/meta.yaml +++ /dev/null @@ -1,50 +0,0 @@ -package: - name: ete3 - version: '3.1.1' - -source: - url: https://pypi.python.org/packages/21/17/3c49b7fafe10ed63bb7904ebf9764b98db726aa5fd482fb006818854bc04/ete3-3.1.1.tar.gz - md5: 80728c3a4243c1b5da5839d70761c32f - -build: - noarch: python - number: 1 - - -requirements: - host: - - lxml - - numpy - - pyqt >=4.11.*,<5 - - python - - six - - run: - - lxml - - numpy - - pyqt >=4.11.* - - python - - scipy - - six - - xorg-libxext - - xorg-xextproto - - xorg-libxdmcp - - xorg-libsm - - xorg-libxrender - - xorg-libxau - -test: - imports: - - ete3 - - ete3.treeview - -about: - home: http://etetoolkit.org/ - license: GPLv3 - summary: A Python framework for the analysis and visualization of trees - -extra: - container: - # ggplot depends on libGL.so.1 from the system - extended-base: true - diff --git a/recipes/hicmatrix/meta.yaml b/recipes/hicmatrix/meta.yaml index f793446645d88..cd92cc7c7ebf4 100644 --- a/recipes/hicmatrix/meta.yaml +++ b/recipes/hicmatrix/meta.yaml @@ -4,7 +4,7 @@ package: source: url: https://github.com/deeptools/HiCMatrix/archive/11.tar.gz - sha256: a6c922a336b479f4514076e88dd833c5f9c5fa6c7f44ea9ca81a8ce6069fa485 + sha256: 22a8388b4bb810c53949c11c40f20ad48d2e326e64262c0c50299224bef6a7c1 build: number: 0 diff --git a/recipes/pathwaymatcher/meta.yaml b/recipes/pathwaymatcher/meta.yaml index e1f7def0967e1..ac6a160a683c0 100644 --- a/recipes/pathwaymatcher/meta.yaml +++ b/recipes/pathwaymatcher/meta.yaml @@ -31,6 +31,12 @@ about: summary: | PathwayMatcher is a software tool writen in Java to search for pathways related to a list of proteins in Reactome. +about: + home: https://github.com/PathwayAnalysisPlatform/PathwayMatcher + license: Apache License, Version 2.0 + summary: | + PathwayMatcher is a software tool writen in Java to search for pathways related to a list of proteins in Reactome. + extra: notes: | PathwayMatcher is Java program that comes with a custom wrapper shell script. diff --git a/recipes/r-bc3net/meta.yaml b/recipes/r-bc3net/meta.yaml index 468956295556c..c1ae2395145df 100644 --- a/recipes/r-bc3net/meta.yaml +++ b/recipes/r-bc3net/meta.yaml @@ -14,15 +14,13 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ - lib/ requirements: - build: - host: - r-base - r-matrix diff --git a/recipes/r-clvalid/meta.yaml b/recipes/r-clvalid/meta.yaml index 812b1877df1ff..cf351a2e7c9ab 100644 --- a/recipes/r-clvalid/meta.yaml +++ b/recipes/r-clvalid/meta.yaml @@ -13,7 +13,7 @@ source: sha256: c13ef1b6258e34ba53615b78f39dbe4d8ba47b976b3c24a3eedaecf5ffba19ed build: - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-cp4p/meta.yaml b/recipes/r-cp4p/meta.yaml index 5881efa3c9369..4c2c192ca568a 100644 --- a/recipes/r-cp4p/meta.yaml +++ b/recipes/r-cp4p/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-diffcorr/meta.yaml b/recipes/r-diffcorr/meta.yaml index a207f73aa9116..5f9e5235a75a1 100644 --- a/recipes/r-diffcorr/meta.yaml +++ b/recipes/r-diffcorr/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-dnet/meta.yaml b/recipes/r-dnet/meta.yaml index 2f58eb8131ac9..5dad4756bde37 100644 --- a/recipes/r-dnet/meta.yaml +++ b/recipes/r-dnet/meta.yaml @@ -13,7 +13,7 @@ source: sha256: a8d4f8541420fea78996633d4ca097ef433088eb5083e73a73a915a440598c75 build: - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-enrichr/meta.yaml b/recipes/r-enrichr/meta.yaml index 9ad19f86fe8f2..975faaeb65446 100644 --- a/recipes/r-enrichr/meta.yaml +++ b/recipes/r-enrichr/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-fmsb/meta.yaml b/recipes/r-fmsb/meta.yaml index da5cbaeb6783f..54f61c368a316 100644 --- a/recipes/r-fmsb/meta.yaml +++ b/recipes/r-fmsb/meta.yaml @@ -14,7 +14,7 @@ source: sha256: 4503998d2fd90f5ee62587594dc2adeaf022355d2e294dc5bcfb0271bd5d49d8 build: - number: 3 + number: 4 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-gap/meta.yaml b/recipes/r-gap/meta.yaml index 73598771b1585..7adb6bd00f012 100644 --- a/recipes/r-gap/meta.yaml +++ b/recipes/r-gap/meta.yaml @@ -13,7 +13,7 @@ source: sha256: 5a20adcc7e503b9a2123048510d56ce3ec9f00d5855629b4cbf0d7c7ad8c6fb5 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-grain/meta.yaml b/recipes/r-grain/meta.yaml index 555a46b6c461b..6d343ca657040 100644 --- a/recipes/r-grain/meta.yaml +++ b/recipes/r-grain/meta.yaml @@ -1,6 +1,4 @@ {% set version = '1.3-0' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-grain @@ -13,22 +11,16 @@ source: sha256: 5e1acec4fec41079242fb4e08619c8bd74ea5620ff7c8b54e06822e8af216775 build: - merge_build_host: True # [win] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ requirements: build: - - {{ compiler('c') }} # [not win] - - {{ compiler('cxx') }} # [not win] - - {{native}}toolchain # [win] - - {{posix}}filesystem # [win] - - {{posix}}make - - {{posix}}sed # [win] - - {{posix}}coreutils # [win] - - {{posix}}zip # [win] + - {{ compiler('c') }} + - {{ compiler('cxx') }} + - make host: - r-base - r-rcpp >=0.11.1 @@ -41,7 +33,6 @@ requirements: - r-magrittr run: - r-base - - {{native}}gcc-libs # [win] - r-rcpp >=0.11.1 - r-rcpparmadillo - r-rcppeigen @@ -53,8 +44,7 @@ requirements: test: commands: - - $R -e "library('gRain')" # [not win] - - "\"%R%\" -e \"library('gRain')\"" # [win] + - $R -e "library('gRain')" about: home: http://people.math.aau.dk/~sorenh/software/gR/ @@ -64,10 +54,6 @@ about: license_family: GPL3 license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2' -extra: - recipe-maintainers: - - conda-forge/r - # Package: gRain # Version: 1.3-0 # Title: Graphical Independence Networks diff --git a/recipes/r-grbase/meta.yaml b/recipes/r-grbase/meta.yaml index 9653e4de070c1..75c5df35a2ddb 100644 --- a/recipes/r-grbase/meta.yaml +++ b/recipes/r-grbase/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-gwasexacthw/meta.yaml b/recipes/r-gwasexacthw/meta.yaml index 2e50774a49bdb..c46670a9d70e2 100644 --- a/recipes/r-gwasexacthw/meta.yaml +++ b/recipes/r-gwasexacthw/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-hardyweinberg/meta.yaml b/recipes/r-hardyweinberg/meta.yaml index 315708ed0dda7..66fe0a945bf1f 100644 --- a/recipes/r-hardyweinberg/meta.yaml +++ b/recipes/r-hardyweinberg/meta.yaml @@ -1,6 +1,4 @@ {% set version = '1.6.3' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-hardyweinberg @@ -13,7 +11,7 @@ source: sha256: ae087dea740a70a75d3f41f0c79f1c9b4fa50e71c8a0adce8025396b30213fc7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -22,7 +20,7 @@ requirements: build: - {{ compiler('c') }} - {{ compiler('cxx') }} - - {{posix}}make + - make host: - r-base - r-rcpp diff --git a/recipes/r-htscluster/meta.yaml b/recipes/r-htscluster/meta.yaml index ad7ebbcd4d9eb..e9c7427209561 100644 --- a/recipes/r-htscluster/meta.yaml +++ b/recipes/r-htscluster/meta.yaml @@ -1,6 +1,4 @@ {% set version = '2.0.8' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-htscluster @@ -13,15 +11,13 @@ source: sha256: 6f82fa50bd95620fe5dea7c66a1876a6fea0bd46bb3e1aa54806f5060d74cb72 build: - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ - lib/ requirements: - build: - host: - r-base - r-capushe @@ -35,8 +31,7 @@ requirements: test: commands: - - $R -e "library('HTSCluster')" # [not win] - - "\"%R%\" -e \"library('HTSCluster')\"" # [win] + - $R -e "library('HTSCluster')" about: home: https://CRAN.R-project.org/package=HTSCluster diff --git a/recipes/r-ic10/meta.yaml b/recipes/r-ic10/meta.yaml index 0b52cefa57a5d..9ee280e89ce31 100644 --- a/recipes/r-ic10/meta.yaml +++ b/recipes/r-ic10/meta.yaml @@ -1,8 +1,5 @@ {% set version = '1.4.2' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} - package: name: r-ic10 version: {{ version|replace("-", "_") }} @@ -14,24 +11,16 @@ source: sha256: 86075b562b78d609f0ddf729f4d624f35e8fc2e907deadd51a15bbe5a1c6fd5c build: - merge_build_host: True # [win] - - number: 1 - skip: true # [win32] - + number: 2 rpaths: - lib/R/lib/ - lib/ requirements: - build: - - {{posix}}zip # [win] - host: - r-base - r-ic10trainingdata - r-pamr - run: - r-base - r-ic10trainingdata @@ -52,12 +41,3 @@ about: trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. license_family: GPL3 -extra: - recipe-maintainers: - - MathiasHaudgaard - - FrodePedersen - - ArneKr - - johanneskoester - - bgruening - - daler - - jdblischak diff --git a/recipes/r-imp4p/meta.yaml b/recipes/r-imp4p/meta.yaml index 6e7664e487bdd..82ebb3790a881 100644 --- a/recipes/r-imp4p/meta.yaml +++ b/recipes/r-imp4p/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-imputelcmd/meta.yaml b/recipes/r-imputelcmd/meta.yaml index 34bd365b378c9..8f70cfe966737 100644 --- a/recipes/r-imputelcmd/meta.yaml +++ b/recipes/r-imputelcmd/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-isogene/meta.yaml b/recipes/r-isogene/meta.yaml index ee0cf4e8699df..59860c42c5404 100644 --- a/recipes/r-isogene/meta.yaml +++ b/recipes/r-isogene/meta.yaml @@ -1,6 +1,4 @@ {% set version = '1.0-24' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-isogene @@ -13,16 +11,13 @@ source: sha256: 19049382c45c870cd8e51e47ec1ec9b38bbfa1ff4af31fd5a07b5af57505953a build: - merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ - lib/ requirements: - build: - host: - r-base - bioconductor-biobase @@ -40,8 +35,7 @@ requirements: test: commands: - - $R -e "library('IsoGene')" # [not win] - - "\"%R%\" -e \"library('IsoGene')\"" # [win] + - $R -e "library('IsoGene')" about: home: https://CRAN.R-project.org/package=IsoGene @@ -56,15 +50,6 @@ about: license_family: GPL3 license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3' -extra: - recipe-maintainers: - - johanneskoester - - bgruening - - daler - - jdblischak - - cbrueffer - - dbast - # Package: IsoGene # Type: Package # Title: Order-Restricted Inference for Microarray Experiments diff --git a/recipes/r-isva/meta.yaml b/recipes/r-isva/meta.yaml index cdaea0074dd2c..ba190d7396724 100644 --- a/recipes/r-isva/meta.yaml +++ b/recipes/r-isva/meta.yaml @@ -1,6 +1,4 @@ {% set version = '1.9' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-isva @@ -13,17 +11,13 @@ source: sha256: 9fd016e0b34034d271d45f8a0d0db62780bf0187112e45f610aa9237014e1d17 build: - merge_build_host: True # [win] - number: 0 - skip: true # [win32] + number: 1 noarch: generic rpaths: - lib/R/lib/ - lib/ requirements: - build: - host: - r-base - r-jade @@ -37,8 +31,7 @@ requirements: test: commands: - - $R -e "library('isva')" # [not win] - - "\"%R%\" -e \"library('isva')\"" # [win] + - $R -e "library('isva')" about: home: https://CRAN.R-project.org/package=isva @@ -47,19 +40,4 @@ about: the presence of potential confounding factors (see Teschendorff AE et al 2011, ).' license_family: GPL2 - license_file: '{{ environ["PREFIX"] }}\/lib\/R\/share\/licenses\/GPL-2' # [unix] - license_file: '{{ environ["PREFIX"] }}\R\share\licenses\GPL-2' # [win] license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2' - -extra: - recipe-maintainers: - - conda-forge/r -extra: - recipe-maintainers: - - MathiasHaudgaard - - FrodePedersen - - ArneKr - - johanneskoester - - bgruening - - daler - - jdblischak diff --git a/recipes/r-jackstraw/meta.yaml b/recipes/r-jackstraw/meta.yaml index 16f6808c1a796..64b84563167a1 100644 --- a/recipes/r-jackstraw/meta.yaml +++ b/recipes/r-jackstraw/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-loose.rock/meta.yaml b/recipes/r-loose.rock/meta.yaml index 4443a1791e33b..5ff4982c07143 100644 --- a/recipes/r-loose.rock/meta.yaml +++ b/recipes/r-loose.rock/meta.yaml @@ -1,6 +1,4 @@ {% set version = '1.0.13' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-loose.rock @@ -13,7 +11,7 @@ source: sha256: 13b81539dc15e6e7b5980b98eb62814170530477869c93acca4a48f2cd14456f build: - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-metama/meta.yaml b/recipes/r-metama/meta.yaml index 10ff0665aaa09..9d0dcae13b37a 100644 --- a/recipes/r-metama/meta.yaml +++ b/recipes/r-metama/meta.yaml @@ -1,8 +1,5 @@ {% set version = '3.1.2' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} - package: name: r-metama version: {{ version|replace("-", "_") }} @@ -15,14 +12,12 @@ source: build: noarch: generic - number: 3 + number: 4 rpaths: - lib/R/lib/ - lib/ requirements: - build: - host: - r-base - r-smvar @@ -34,9 +29,7 @@ requirements: test: commands: - - - $R -e "library('metaMA')" # [not win] - - "\"%R%\" -e \"library('metaMA')\"" # [win] + - $R -e "library('metaMA')" about: home: https://CRAN.R-project.org/package=metaMA diff --git a/recipes/r-nabor/meta.yaml b/recipes/r-nabor/meta.yaml index 67d1db389a8d6..624087a25b08f 100644 --- a/recipes/r-nabor/meta.yaml +++ b/recipes/r-nabor/meta.yaml @@ -10,7 +10,7 @@ source: sha256: 47938dcc987279281c13abfd667660bf1b3b76af116136a27eb066ee1a4b43da build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-nbpseq/meta.yaml b/recipes/r-nbpseq/meta.yaml index 6444394f61301..d467be7aea314 100644 --- a/recipes/r-nbpseq/meta.yaml +++ b/recipes/r-nbpseq/meta.yaml @@ -1,6 +1,4 @@ {% set version = '0.3.0' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-nbpseq @@ -13,32 +11,25 @@ source: sha256: 7e251fa017d91ffa7b0c5e740859db4aa4f9bc3b46632983e03c4da161a79e50 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ requirements: build: - - {{ compiler('c') }} # [not win] - - {{native}}toolchain # [win] - - {{posix}}filesystem # [win] - - {{posix}}make - - {{posix}}sed # [win] - - {{posix}}coreutils # [win] - - {{posix}}zip # [win] + - {{ compiler('c') }} + - make host: - r-base - bioconductor-qvalue run: - r-base - - {{native}}gcc-libs # [win] - bioconductor-qvalue test: commands: - - $R -e "library('NBPSeq')" # [not win] - - "\"%R%\" -e \"library('NBPSeq')\"" # [win] + - $R -e "library('NBPSeq')" about: home: https://CRAN.R-project.org/package=NBPSeq diff --git a/recipes/r-ontologyplot/build.sh b/recipes/r-ontologyplot/build.sh new file mode 100644 index 0000000000000..40ac034907a24 --- /dev/null +++ b/recipes/r-ontologyplot/build.sh @@ -0,0 +1,34 @@ +#!/bin/bash +if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then + export DISABLE_AUTOBREW=1 + $R CMD INSTALL --build . +else + mkdir -p $PREFIX/lib/R/library/ontologyPlot + mv * $PREFIX/lib/R/library/ontologyPlot + if [[ $target_platform == osx-64 ]]; then + pushd $PREFIX + for libdir in lib/R/lib lib/R/modules lib/R/library lib/R/bin/exec sysroot/usr/lib; do + pushd $libdir || exit 1 + for SHARED_LIB in $(find . -type f -iname "*.dylib" -or -iname "*.so" -or -iname "R"); do + echo "fixing SHARED_LIB $SHARED_LIB" + install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5.0-MRO/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true + install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true + install_name_tool -change /usr/local/clang4/lib/libomp.dylib "$PREFIX"/lib/libomp.dylib $SHARED_LIB || true + install_name_tool -change /usr/local/gfortran/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true + install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true + install_name_tool -change /usr/local/gfortran/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true + install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true + install_name_tool -change /usr/lib/libgcc_s.1.dylib "$PREFIX"/lib/libgcc_s.1.dylib $SHARED_LIB || true + install_name_tool -change /usr/lib/libiconv.2.dylib "$PREFIX"/sysroot/usr/lib/libiconv.2.dylib $SHARED_LIB || true + install_name_tool -change /usr/lib/libncurses.5.4.dylib "$PREFIX"/sysroot/usr/lib/libncurses.5.4.dylib $SHARED_LIB || true + install_name_tool -change /usr/lib/libicucore.A.dylib "$PREFIX"/sysroot/usr/lib/libicucore.A.dylib $SHARED_LIB || true + install_name_tool -change /usr/lib/libexpat.1.dylib "$PREFIX"/lib/libexpat.1.dylib $SHARED_LIB || true + install_name_tool -change /usr/lib/libcurl.4.dylib "$PREFIX"/lib/libcurl.4.dylib $SHARED_LIB || true + install_name_tool -change /usr/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true + install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true + done + popd + done + popd + fi +fi diff --git a/recipes/r-ontologyplot/meta.yaml b/recipes/r-ontologyplot/meta.yaml new file mode 100644 index 0000000000000..3cb399162844a --- /dev/null +++ b/recipes/r-ontologyplot/meta.yaml @@ -0,0 +1,41 @@ +{% set version = '1.4' %} + +package: + name: r-ontologyplot + version: {{ version|replace("-", "_") }} + +source: + url: + - {{ cran_mirror }}/src/contrib/ontologyPlot_{{ version }}.tar.gz + - {{ cran_mirror }}/src/contrib/Archive/ontologyPlot/ontologyPlot_{{ version }}.tar.gz + sha256: f64ebf92f4fcd90fc7c2118e0eb0256edb25ee3648bac33f5483874cd393416a + +build: + number: 0 + noarch: generic + rpaths: + - lib/R/lib/ + - lib/ + +requirements: + host: + - r-base + - bioconductor-rgraphviz + - r-ontologyindex + - r-paintmap + run: + - r-base + - bioconductor-rgraphviz + - r-ontologyindex + - r-paintmap + +test: + commands: + - $R -e "library('ontologyPlot')" + +about: + home: https://CRAN.R-project.org/package=ontologyPlot + license: GPL (>= 2) + summary: Functions for visualising sets of ontological terms using the 'graphviz' layout system. + license_family: GPL3 + license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2' diff --git a/recipes/r-orqa/meta.yaml b/recipes/r-orqa/meta.yaml index 63a08c8482274..4013dbca49700 100644 --- a/recipes/r-orqa/meta.yaml +++ b/recipes/r-orqa/meta.yaml @@ -1,6 +1,4 @@ {% set version = '0.2.1' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-orqa @@ -13,22 +11,16 @@ source: sha256: 18378f62fbfc7f751dda71ca21e438fb3677dd0c293e74801784e2c56e963b6e build: - merge_build_host: True # [win] - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ requirements: build: - - {{ compiler('c') }} # [not win] - - {{ compiler('cxx') }} # [not win] - - {{native}}toolchain # [win] - - {{posix}}filesystem # [win] - - {{posix}}make - - {{posix}}sed # [win] - - {{posix}}coreutils # [win] - - {{posix}}zip # [win] + - {{ compiler('c') }} + - {{ compiler('cxx') }} + - make host: - r-base - r-rcpp >=0.8.9 @@ -37,7 +29,6 @@ requirements: - r-nlme >=3.1_96 run: - r-base - - {{native}}gcc-libs # [win] - r-rcpp >=0.8.9 - bioconductor-genefilter >=1.24.3 - r-gtools >=2.6.1 @@ -56,15 +47,6 @@ about: license_family: GPL3 license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2' -extra: - recipe-maintainers: - - johanneskoester - - bgruening - - daler - - jdblischak - - cbrueffer - - dbast - # Package: orQA # Type: Package # Title: Order Restricted Assessment Of Microarray Titration Experiments diff --git a/recipes/r-pcalg/meta.yaml b/recipes/r-pcalg/meta.yaml index aa4ed3013f944..d8f8936ecda14 100644 --- a/recipes/r-pcalg/meta.yaml +++ b/recipes/r-pcalg/meta.yaml @@ -1,6 +1,4 @@ {% set version = '2.6-0' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-pcalg @@ -13,22 +11,16 @@ source: sha256: 2ed97698a0c5bdee7fa499504eb774b589067e03b27bb4ec18b49baf607cacf5 build: - merge_build_host: True # [win] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ requirements: build: - - {{ compiler('c') }} # [not win] - - {{ compiler('cxx') }} # [not win] - - {{native}}toolchain # [win] - - {{posix}}filesystem # [win] - - {{posix}}make - - {{posix}}sed # [win] - - {{posix}}coreutils # [win] - - {{posix}}zip # [win] + - {{ compiler('c') }} + - {{ compiler('cxx') }} + - make host: - r-base - r-bh @@ -49,7 +41,6 @@ requirements: - r-vcd run: - r-base - - {{native}}gcc-libs # [win] - r-bh - bioconductor-rbgl - r-rcpp @@ -86,10 +77,6 @@ about: license_family: GPL3 license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2' -extra: - recipe-maintainers: - - conda-forge/r - # Package: pcalg # Version: 2.6-0 # Date: 2018-05-14 diff --git a/recipes/r-phylobase/meta.yaml b/recipes/r-phylobase/meta.yaml index 654bf573115a6..ef207dbeeb02f 100644 --- a/recipes/r-phylobase/meta.yaml +++ b/recipes/r-phylobase/meta.yaml @@ -15,7 +15,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-plsgenomics/meta.yaml b/recipes/r-plsgenomics/meta.yaml index f948dd9fb81ad..56bd719d13010 100644 --- a/recipes/r-plsgenomics/meta.yaml +++ b/recipes/r-plsgenomics/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-pma/meta.yaml b/recipes/r-pma/meta.yaml index af0482451e129..1d7db8fde688f 100644 --- a/recipes/r-pma/meta.yaml +++ b/recipes/r-pma/meta.yaml @@ -1,8 +1,5 @@ {% set version = '1.1' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} - package: name: r-pma version: {{ version|replace("-", "_") }} @@ -14,36 +11,26 @@ source: sha256: fc6473b87ed8e6b71a3d014ad8b9070e4f6cd250fd3214f6655d960a73429f6e build: - merge_build_host: True # [win] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ requirements: build: - - {{ compiler('c') }} # [not win] - - {{ compiler('cxx') }} # [not win] - - {{native}}toolchain # [win] - - {{posix}}filesystem # [win] - - {{posix}}make - - {{posix}}sed # [win] - - {{posix}}coreutils # [win] - - {{posix}}zip # [win] - + - {{ compiler('c') }} + - {{ compiler('cxx') }} + - make host: - r-base - - 'bioconductor-impute >=1.56.0,<1.57.0' - + - bioconductor-impute run: - r-base - - 'bioconductor-impute >=1.54.0,<1.57.0' + - bioconductor-impute test: commands: - - - $R -e "library('PMA')" # [not win] - - "\"%R%\" -e \"library('PMA')\"" # [win] + - $R -e "library('PMA')" about: home: https://CRAN.R-project.org/package=PMA diff --git a/recipes/r-pscbs/meta.yaml b/recipes/r-pscbs/meta.yaml index e5f59c73b7eda..7b577fbdebc64 100644 --- a/recipes/r-pscbs/meta.yaml +++ b/recipes/r-pscbs/meta.yaml @@ -14,7 +14,7 @@ source: sha256: 3365065d5375c599eb024bfff12c5f6b10a6b1a4fe4ba6f200f7e83618dd399a build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-qpcr/build.sh b/recipes/r-qpcr/build.sh index 966f6fbae35b0..300e0f5f589a5 100644 --- a/recipes/r-qpcr/build.sh +++ b/recipes/r-qpcr/build.sh @@ -1,4 +1,5 @@ #!/bin/bash +export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then export DISABLE_AUTOBREW=1 $R CMD INSTALL --build . diff --git a/recipes/r-qpcr/meta.yaml b/recipes/r-qpcr/meta.yaml index ed92a68720460..75dd625c6e499 100644 --- a/recipes/r-qpcr/meta.yaml +++ b/recipes/r-qpcr/meta.yaml @@ -12,7 +12,7 @@ source: build: skip: True # [osx] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -20,7 +20,13 @@ build: requirements: build: - {{ compiler('c') }} - - {{posix}}make + - make + - {{ cdt('mesa-libgl-devel') }} # [linux] + - {{ cdt('mesa-dri-drivers') }} # [linux] + - {{ cdt('libselinux') }} # [linux] + - {{ cdt('libxdamage') }} # [linux] + - {{ cdt('libxxf86vm') }} # [linux] + - xorg-libxfixes # [linux] host: - r-base - r-mass @@ -38,7 +44,7 @@ requirements: test: commands: - - $R -e "library('qpcR')" + - LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib64 $R -e "library('qpcR')" about: home: https://CRAN.R-project.org/package=qpcR @@ -51,4 +57,4 @@ about: extra: container: # gl - extended-base: true + extended-base: true diff --git a/recipes/r-qqman/meta.yaml b/recipes/r-qqman/meta.yaml index cda71e829147b..8483dab49ba81 100644 --- a/recipes/r-qqman/meta.yaml +++ b/recipes/r-qqman/meta.yaml @@ -1,5 +1,4 @@ {% set version = '0.1.4' %} - {% set posix = 'm2-' if win else '' %} {% set native = 'm2w64-' if win else '' %} @@ -15,9 +14,7 @@ source: build: merge_build_host: True # [win] - - number: 3 - + number: 4 rpaths: - lib/R/lib/ - lib/ @@ -25,11 +22,9 @@ build: requirements: build: - {{posix}}zip # [win] - host: - r-base - r-calibrate - run: - r-base - r-calibrate @@ -45,12 +40,3 @@ about: license: GPL-3 summary: Create Q-Q and manhattan plots for GWAS data from PLINK results. license_family: GPL3 -extra: - recipe-maintainers: - - MathiasHaudgaard - - FrodePedersen - - ArneKr - - johanneskoester - - bgruening - - daler - - jdblischak diff --git a/recipes/r-rismed/meta.yaml b/recipes/r-rismed/meta.yaml index 0b86423a21eb4..3f3be51208eec 100644 --- a/recipes/r-rismed/meta.yaml +++ b/recipes/r-rismed/meta.yaml @@ -14,7 +14,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-rnexml/meta.yaml b/recipes/r-rnexml/meta.yaml index 68551a1d9326b..e7c642f9e8a3e 100644 --- a/recipes/r-rnexml/meta.yaml +++ b/recipes/r-rnexml/meta.yaml @@ -12,7 +12,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 skip: true # [win32] rpaths: diff --git a/recipes/r-rphast/meta.yaml b/recipes/r-rphast/meta.yaml index c5f2fcebd6049..be8c1bad79c5d 100644 --- a/recipes/r-rphast/meta.yaml +++ b/recipes/r-rphast/meta.yaml @@ -13,7 +13,7 @@ source: sha256: 2fc5fdd4dcf26ddf44427318925a69a743e97cb88ccc4964c314fcf389403584 build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-rsnps/meta.yaml b/recipes/r-rsnps/meta.yaml index 563d2368ae77e..59e9961286566 100644 --- a/recipes/r-rsnps/meta.yaml +++ b/recipes/r-rsnps/meta.yaml @@ -13,8 +13,7 @@ source: sha256: b26bab78807c34f57f56a0f2ce17300a18bae90c78ae8b8440e0d87df143a5fa build: - number: 0 - skip: true # [win32] + number: 1 noarch: generic rpaths: - lib/R/lib/ diff --git a/recipes/r-rtfbs/meta.yaml b/recipes/r-rtfbs/meta.yaml index 6995c8fbe6f82..ed5b25e388a8c 100644 --- a/recipes/r-rtfbs/meta.yaml +++ b/recipes/r-rtfbs/meta.yaml @@ -13,7 +13,7 @@ source: sha256: df6dcf42064e7ee6180bcd9c0ffaeb09c45bf282b5fdb2bc20f7397b9891390a build: - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-samr/meta.yaml b/recipes/r-samr/meta.yaml index 8e0b35a1e8609..7ddb7a1b85172 100644 --- a/recipes/r-samr/meta.yaml +++ b/recipes/r-samr/meta.yaml @@ -11,18 +11,17 @@ source: sha256: 25f88ac002c2adce8881a562241bc12d683810a05defb553e8e3d4878f037506 build: - number: 0 - + number: 1 rpaths: - lib/R/lib/ - lib/ + requirements: build: - {{ compiler('c') }} - host: - r-base - - 'bioconductor-impute >=1.56.0,<1.57.0' + - bioconductor-impute >=1.56.0 - r-matrixstats - r-gsa - r-openxlsx @@ -31,7 +30,7 @@ requirements: run: - r-base - - 'bioconductor-impute >=1.56.0,<1.57.0' + - bioconductor-impute >=1.56.0 - r-matrixstats - r-gsa - r-openxlsx @@ -47,12 +46,3 @@ about: license: LGPL summary: Significance Analysis of Microarrays license_family: LGPL -extra: - recipe-maintainers: - - MathiasHaudgaard - - FrodePedersen - - ArneKr - - johanneskoester - - bgruening - - daler - - jdblischak diff --git a/recipes/r-seurat/meta.yaml b/recipes/r-seurat/meta.yaml index e8853fdd43fac..830cf84b560f3 100644 --- a/recipes/r-seurat/meta.yaml +++ b/recipes/r-seurat/meta.yaml @@ -11,7 +11,7 @@ source: sha256: 16df5dec6b41d49320c5bf5ce30eb3b7dedeea69b054b55b77528f2f2b7bce04 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-smartsva/meta.yaml b/recipes/r-smartsva/meta.yaml index 13f0a74536215..346671f62f7d8 100644 --- a/recipes/r-smartsva/meta.yaml +++ b/recipes/r-smartsva/meta.yaml @@ -1,6 +1,4 @@ {% set version = '0.1.3' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-smartsva @@ -13,23 +11,16 @@ source: sha256: d7925743d04bd52dee575a477cc7e8395fedb08f5dbb8427e61e3d6dbfd04881 build: - merge_build_host: True # [win] - number: 0 - skip: true # [win32] + number: 1 rpaths: - lib/R/lib/ - lib/ requirements: build: - - {{ compiler('c') }} # [not win] - - {{ compiler('cxx') }} # [not win] - - {{native}}toolchain # [win] - - {{posix}}filesystem # [win] - - {{posix}}make - - {{posix}}sed # [win] - - {{posix}}coreutils # [win] - - {{posix}}zip # [win] + - {{ compiler('c') }} + - {{ compiler('cxx') }} + - make host: - r-base - r-rspectra @@ -39,7 +30,6 @@ requirements: - bioconductor-sva run: - r-base - - {{native}}gcc-libs # [win] - r-rspectra - r-rcpp - r-rcppeigen @@ -48,8 +38,7 @@ requirements: test: commands: - - $R -e "library('SmartSVA')" # [not win] - - "\"%R%\" -e \"library('SmartSVA')\"" # [win] + - $R -e "library('SmartSVA')" about: home: https://CRAN.R-project.org/package=SmartSVA @@ -60,19 +49,4 @@ about: a revision on it that achieves an order of magnitude faster running time while trading no accuracy loss in return. license_family: GPL3 - license_file: '{{ environ["PREFIX"] }}\/lib\/R\/share\/licenses\/GPL-3' # [unix] - license_file: '{{ environ["PREFIX"] }}\R\share\licenses\GPL-3' # [win] license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3' - -extra: - recipe-maintainers: - - conda-forge/r -extra: - recipe-maintainers: - - MathiasHaudgaard - - FrodePedersen - - ArneKr - - johanneskoester - - bgruening - - daler - - jdblischak diff --git a/recipes/r-spp/meta.yaml b/recipes/r-spp/meta.yaml index ef8618a415fee..a535e57f47de5 100644 --- a/recipes/r-spp/meta.yaml +++ b/recipes/r-spp/meta.yaml @@ -15,7 +15,7 @@ source: build: merge_build_host: True # [win] - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-tcr/meta.yaml b/recipes/r-tcr/meta.yaml index 6fb69489ad568..9382863f6f7c4 100644 --- a/recipes/r-tcr/meta.yaml +++ b/recipes/r-tcr/meta.yaml @@ -13,7 +13,7 @@ source: sha256: c2ee25d507ccffc68243f7a8ccd7e485d68afdce608bb1677a95dd6f3033e29d build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-vcfr/meta.yaml b/recipes/r-vcfr/meta.yaml index cfc4cc108e9d4..e7f6b2fbd56fd 100644 --- a/recipes/r-vcfr/meta.yaml +++ b/recipes/r-vcfr/meta.yaml @@ -15,7 +15,7 @@ source: build: merge_build_host: True # [win] - number: 1 + number: 2 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-wgcna/meta.yaml b/recipes/r-wgcna/meta.yaml index 20ddf83202c04..66d2b0a3d6765 100644 --- a/recipes/r-wgcna/meta.yaml +++ b/recipes/r-wgcna/meta.yaml @@ -11,7 +11,7 @@ source: sha256: 0a04f15a20817f9260ae1896eda3be83a7f4855a27a348df85c7f4d376f1efe8 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-workflowscriptscommon/meta.yaml b/recipes/r-workflowscriptscommon/meta.yaml index 05f5a7282b763..8f586370d8620 100644 --- a/recipes/r-workflowscriptscommon/meta.yaml +++ b/recipes/r-workflowscriptscommon/meta.yaml @@ -16,15 +16,15 @@ build: - lib/ requirements: - host: - - r-base - run: - - r-base - - r-optparse + host: + - r-base + run: + - r-base + - r-optparse test: - commands: - - $R -e "library('workflowscriptscommon')" + commands: + - $R -e "library('workflowscriptscommon')" about: home: https://github.com/ebi-gene-expression-group/workflowscriptscommon @@ -35,12 +35,3 @@ about: package is used by other packages (e.g. r-seurat-scripts) to add sets of simple wrappers with robust argument parsing. license_family: GPL -extra: - recipe-maintainers: - - MathiasHaudgaard - - FrodePedersen - - ArneKr - - johanneskoester - - bgruening - - daler - - jdblischak diff --git a/recipes/r-xcell/meta.yaml b/recipes/r-xcell/meta.yaml index f6a42697269e0..c135e8e4f7ba8 100755 --- a/recipes/r-xcell/meta.yaml +++ b/recipes/r-xcell/meta.yaml @@ -13,7 +13,7 @@ source: build: script: $R CMD INSTALL --build . - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -21,7 +21,6 @@ build: requirements: build: - {{ compiler('cxx') }} - host: - r-base - r-roxygen2 @@ -32,7 +31,6 @@ requirements: - r-digest - r-quadprog - r-curl - run: - r-base >=3.1.0 - r-roxygen2 @@ -58,7 +56,6 @@ about: license_family: GPL license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3' - extra: recipe-maintainers: - grst diff --git a/recipes/r-xgr/meta.yaml b/recipes/r-xgr/meta.yaml index b13708e57c0c6..e0165548d83a7 100644 --- a/recipes/r-xgr/meta.yaml +++ b/recipes/r-xgr/meta.yaml @@ -1,6 +1,4 @@ {% set version = '1.1.6' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} package: name: r-xgr @@ -13,15 +11,13 @@ source: sha256: fd72f3a17e3a092fa8eac01cb5d25ad53279ce672cf3b708fd3dee1681052ff8 build: - number: 0 + number: 1 noarch: generic rpaths: - lib/R/lib/ - lib/ requirements: - build: - host: - r-base - bioconductor-biocgenerics diff --git a/recipes/r-xmlrpc/meta.yaml b/recipes/r-xmlrpc/meta.yaml index 2fc30e4376fbf..dabb5a660af0e 100644 --- a/recipes/r-xmlrpc/meta.yaml +++ b/recipes/r-xmlrpc/meta.yaml @@ -1,6 +1,5 @@ package: name: r-xmlrpc - version: "0.2_4" source: @@ -8,8 +7,7 @@ source: - http://download.r-forge.r-project.org/src/contrib/XMLRPC_0.2-4.tar.gz build: - number: 1 - + number: 2 rpaths: - lib/R/lib/ - lib/ @@ -19,7 +17,6 @@ requirements: - r-base - r-rcurl - r-xml - run: - r-base - r-rcurl @@ -27,7 +24,6 @@ requirements: test: commands: - - $R -e "library('XMLRPC')" # [not win] - "\"%R%\" -e \"library('XMLRPC')\"" # [win] diff --git a/recipes/socru/meta.yaml b/recipes/socru/meta.yaml index 0503b04d545e6..011b42960e5d8 100644 --- a/recipes/socru/meta.yaml +++ b/recipes/socru/meta.yaml @@ -1,32 +1,27 @@ {% set name="socru" %} {% set version="2.1.7" %} -{% set sha256="6c8fa94167528851bbe9fe17f4e946023f38096386da2859343c17b7a68db65f" %} + +package: + name: {{ name }} + version: {{ version }} build: noarch: generic number: 0 script: python -m pip install --no-deps --ignore-installed . -package: - name: {{ name }} - version: {{ version }} - source: url: https://github.com/quadram-institute-bioscience/{{ name }}/archive/v{{ version }}.tar.gz - sha256: {{ sha256 }} + sha256: 6c8fa94167528851bbe9fe17f4e946023f38096386da2859343c17b7a68db65f +build: + number: 1 + script: python -m pip install --no-deps --ignore-installed . requirements: host: - python >=3 - pip - - biopython >=1.68 - - PyYAML - - numpy - - matplotlib - - barrnap - - blast - run: - python >=3 - biopython >=1.68 @@ -35,6 +30,7 @@ requirements: - matplotlib - barrnap - blast + test: commands: - socru --version