diff --git a/recipes/ensembl-vep/build.sh b/recipes/ensembl-vep/build.sh index 86ed4b9e6d31a..29013913cd1e3 100644 --- a/recipes/ensembl-vep/build.sh +++ b/recipes/ensembl-vep/build.sh @@ -1,7 +1,7 @@ #!/bin/bash export C_INCLUDE_PATH=$PREFIX/include target=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM -version=93 +version=94 mkdir -p $target mkdir -p $PREFIX/bin @@ -36,13 +36,14 @@ vep_install -a a --NO_HTSLIB --NO_TEST --NO_BIOPERL --NO_UPDATE rm -rf t/ # Install plugins -curl -ks -o CADD.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/CADD.pm -curl -ks -o dbNSFP.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/dbNSFP.pm -curl -ks -o MaxEntScan.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/MaxEntScan.pm -curl -ks -o SpliceRegion.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/SpliceRegion.pm -curl -ks -o GeneSplicer.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/GeneSplicer.pm -curl -ks -o dbscSNV.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/dbscSNV.pm -curl -L -ks -o loftee.tar.gz https://github.com/konradjk/loftee/archive/f6789b9.tar.gz +curl -L -ks -o VEP_plugins.tar.gz https://github.com/Ensembl/VEP_plugins/archive/release/$version.tar.gz +tar -xzvpf VEP_plugins.tar.gz +mv VEP_plugins*/*.pm . +mv VEP_plugins*/config . +rm -rf VEP_plugins* + +# Install loftee +curl -L -ks -o loftee.tar.gz https://github.com/konradjk/loftee/archive/df3d29e.tar.gz tar -xzvpf loftee.tar.gz mv loftee-*/*.pl . mv loftee-*/*.pm . diff --git a/recipes/ensembl-vep/meta.yaml b/recipes/ensembl-vep/meta.yaml index e00d2f07c88c8..57e0e3b1a63a2 100644 --- a/recipes/ensembl-vep/meta.yaml +++ b/recipes/ensembl-vep/meta.yaml @@ -1,4 +1,4 @@ -{% set version="93.4" %} +{% set version="94.0" %} package: name: ensembl-vep @@ -6,7 +6,7 @@ package: source: url: https://github.com/Ensembl/ensembl-vep/archive/release/{{ version }}.tar.gz - sha256: a760567264f1e7df50639cc8e6f736d9509531c2bf281877a9d28dd6410d4507 + sha256: 194a3b6bd963758513c68fea019f937c6ee3572e4d36309905a930d60673e425 build: number: 0