From a3cd38a7d71048bf514c074bc42eb8a838953fbc Mon Sep 17 00:00:00 2001 From: Christopher Dunn Date: Sat, 2 Feb 2019 11:17:55 -0800 Subject: [PATCH] samtools w/ openssl-1.1.1 (#13448) Another attempt to deal with python2.7.15/openssl issues. E.g. https://github.com/PacificBiosciences/pbbioconda/issues/85 Note: samtools-1.9 was built against opensll-1.0.2, which conflicts with the latest python2.7.15 build. openssl-1.1.1a and openssl-1.0.2p are not ABI-compatible, so we need to specify that. I do not see a way to pin the old opensll (since there is ambiguity between 1.0.2o and 1.0.2p), so I am taking the suggestion from kylebeauchamp and rebuilding with openssl-1.1.1. That might break some people until they upgrade python, etc. but I do not see a better solution without actually bumping the version of samtools. --- recipes/samtools/meta.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/recipes/samtools/meta.yaml b/recipes/samtools/meta.yaml index dda98b5755603..0350e91d8e32d 100644 --- a/recipes/samtools/meta.yaml +++ b/recipes/samtools/meta.yaml @@ -5,10 +5,10 @@ package: version: {{ version }} build: - number: 2 + number: 3 source: - url: https://github.com/samtools/samtools/releases/download/{{ version }}/samtools-{{ version }}.tar.bz2 + url: https://github.com/samtools/samtools/releases/download/{{ version }}/samtools-1.9.tar.bz2 sha256: 083f688d7070082411c72c27372104ed472ed7a620591d06f928e653ebc23482 requirements: