diff --git a/recipes/mosdepth/build.sh b/recipes/mosdepth/build.sh index 5e0205924990f..096b6217fae55 100644 --- a/recipes/mosdepth/build.sh +++ b/recipes/mosdepth/build.sh @@ -1,6 +1,6 @@ #!/bin/sh -export BRANCH=v0.17.2 +export BRANCH=v0.19.0 export PATH="nim-$BRANCH/bin/nim/bin:${PATH:+:$PATH}" bash ./scripts/install.sh export PATH="nim-$BRANCH/bin:${PATH:+:$PATH}" diff --git a/recipes/mosdepth/install.diff b/recipes/mosdepth/install.diff index 85bc8506aa60e..fc5860bfffd66 100644 --- a/recipes/mosdepth/install.diff +++ b/recipes/mosdepth/install.diff @@ -1,33 +1,29 @@ -diff --git a/scripts/install.sh b/scripts/install.sh --- a/scripts/install.sh +++ b/scripts/install.sh -@@ -1,8 +1,5 @@ - #!/bin/bash +@@ -6,25 +6,11 @@ + set -euo pipefail + export base=$(pwd) +-BRANCH=devel +- +-sudo apt-get update -sudo apt-get -qy install bwa make build-essential cmake libncurses-dev ncurses-dev libbz2-dev lzma-dev liblzma-dev \ - curl libssl-dev libtool autoconf automake libcurl4-openssl-dev - - export base=$(pwd) - if [ ! -x nim-$BRANCH/bin/nim ]; then - git clone -b $BRANCH --depth 1 git://github.com/nim-lang/nim nim-$BRANCH/ -@@ -23,7 +20,7 @@ - fi - fi + git clone -b $BRANCH --depth 1 git://github.com/nim-lang/nim nim-$BRANCH/ + cd nim-$BRANCH + sh build_all.sh --export PATH=$PATH:$base/nim-$BRANCH/bin/:$PATH:$base/nimble/src -+export PATH=$base/nim-$BRANCH/bin/:$PATH:$base/nimble/src:$PATH +-export PATH=$PATH:$base/nim-$BRANCH/bin/ ++export PATH=$base/nim-$BRANCH/bin/:$PATH cd $base - echo $PATH - -@@ -45,11 +42,3 @@ - set -x - cd $base - nimble install -y + nimble refresh + $base/nim-$BRANCH/bin/nimble install -y +- -git clone --recursive https://github.com/samtools/htslib.git - --cd htslib && git checkout 1.5 && autoheader && autoconf && ./configure --enable-libcurl +-cd htslib && git checkout 1.9 && autoheader && autoconf && ./configure --enable-libcurl -cd .. -make -j 4 -C htslib -export LD_LIBRARY_PATH=$base/htslib -ls -lh $base/htslib/*.so --echo $base diff --git a/recipes/mosdepth/meta.yaml b/recipes/mosdepth/meta.yaml index 8e460eb037389..5d40687e517fc 100644 --- a/recipes/mosdepth/meta.yaml +++ b/recipes/mosdepth/meta.yaml @@ -1,7 +1,7 @@ {% set name = "mosdepth" %} -{% set version = "0.2.3" %} +{% set version = "0.2.4" %} #{% set revision = "9a9ef85" %} -{% set sha256hash = "a05b3ef3c779c2155816954322adca2d7c06b3e19a409993020b9ad4bbd28dd4" %} +{% set sha256hash = "e49f1e2973f0016aa1f93fffa2b050a2f320faf552f790f6edd60c9e86edfe18" %} package: name: {{ name|lower }} @@ -14,7 +14,7 @@ source: - install.diff build: - number: 1 + number: 0 skip: True # [osx] requirements: