diff --git a/recipes/gatk4/meta.yaml b/recipes/gatk4/meta.yaml
index 58db10549b6d6..d46bac201453d 100644
--- a/recipes/gatk4/meta.yaml
+++ b/recipes/gatk4/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "4.0.12.0" %}
-{% set sha256 = "733134303f4961dec589247ff006612b7a94171fab8913c5d44c836aa086865f" %}
+{% set version = "4.1.0.0" %}
+{% set sha256 = "148aa061328d922a570d0120d88f27e61e5da877f542206f4d77f2d788b7d21d" %}
 
 package:
   name: gatk4