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@daichengxin when I disable the pmultiqc step, then the summary pipeline fails:
[43/caab3b] process > NFCORE_QUANTMS:QUANTMS:CUST... [100%] 1 of 1 ✔ [ef/92ac4c] process > NFCORE_QUANTMS:QUANTMS:SUMM... [100%] 1 of 1, failed: 1 ✘ Execution cancelled -- Finishing pending tasks before exit -[nf-core/quantms] Pipeline completed with errors- Error executing process > 'NFCORE_QUANTMS:QUANTMS:SUMMARYPIPELINE (1)' Caused by: Missing output file(s) `*.db` expected by process `NFCORE_QUANTMS:QUANTMS:SUMMARYPIPELINE (1)` Command executed: multiqc \ --exp_design experimental_design.tsv \ --mzMLs ./mzMLs \ --raw_ids ./raw_ids \ --config ./results/multiqc_config.yml \ ./results \ -o . cat <<-END_VERSIONS > versions.yml "NFCORE_QUANTMS:QUANTMS:SUMMARYPIPELINE": pmultiqc: $(multiqc --pmultiqc_version | sed -e "s/pmultiqc, version //g") END_VERSIONS Command exit status: 0 Command output: | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 4/4 Command error: /// MultiQC 🔍 | v1.12 | multiqc | Search path : results | custom_content | software_versions: Found 1 sample (html) | custom_content | nf-core-quantms-summary: Found 1 sample (html) | multiqc | Compressing plot data | multiqc | Report : multiqc_report.html | multiqc | Data : multiqc_data | multiqc | Plots : multiqc_plots | multiqc | MultiQC complete
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#152
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daichengxin
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Description of the bug
@daichengxin when I disable the pmultiqc step, then the summary pipeline fails:
Command used and terminal output
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Relevant files
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System information
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The text was updated successfully, but these errors were encountered: