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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(plot,bafMatrix)
export(alleleCounts)
export(bafMatrix)
export(barcodes)
export(binommix)
export(callMajor)
export(coverageBySNP)
export(coverageBySample)
export(dtbeta)
export(dtexp)
export(extractBarcode)
export(extractPED)
export(generateWindows)
export(getBarcodeVariants)
export(getCoordinates)
export(getDosage)
export(getFws)
export(getGATKInfo)
export(getHeterozygosity)
export(getHeterozygosityBySample)
export(getMAF)
export(getMSE)
export(getTheta)
export(infomat)
export(lltexp)
export(mleTexp)
export(mse)
export(perSiteAlleleCoverage)
export(perSiteCoverageBySNP)
export(perSiteCoverageBySample)
export(readEstMOI)
export(rtexp)
export(seMM)
export(simulateMOI)
import(graphics)
import(methods)
import(stats)
import(utils)
importFrom(BiocParallel,bplapply)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(IRanges,findOverlaps)
importFrom(MCMCpack,rdirichlet)
importFrom(RColorBrewer,brewer.pal)
importFrom(S4Vectors,subjectHits)
importFrom(SeqArray,alt)
importFrom(SeqArray,granges)
importFrom(SeqArray,ref)
importFrom(SeqArray,seqApply)
importFrom(SeqArray,seqGetData)
importFrom(SeqArray,seqGetFilter)
importFrom(SeqArray,seqResetFilter)
importFrom(SeqArray,seqSetFilter)
importFrom(SeqArray,seqSummary)
importFrom(SeqVarTools,getGenotypeAlleles)
importFrom(flexmix,FLXMRglm)
importFrom(flexmix,getModel)
importFrom(flexmix,initFlexmix)
importFrom(flexmix,parameters)
importFrom(flexmix,prior)
importFrom(scales,alpha)
importMethodsFrom(flexmix,parameters)
importMethodsFrom(flexmix,prior)