-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathmnist.c
441 lines (390 loc) · 11.8 KB
/
mnist.c
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <assert.h>
#include <float.h>
#include "MnistPreProcess.h"
#define TRAIN_NUM 60000
#define TEST_NUM 10000
#define FEATURE 784
#define NUMBER_OF_CLASSES 10
#define FEAT_KEY 0
#define CUT_KEY 1
#define LEFT_KEY 2
#define RIGHT_KEY 3
#define PRED_KEY 4
#define DEPTH_KEY 5
#define NUM_FIELDS 6
#define index(i, j, N) ((i)*(N)) + (j)
void readData(float* dataset,float*labels,const char* dataPath,const char*labelPath)
{
FILE* dataFile=fopen(dataPath,"rb");
FILE* labelFile=fopen(labelPath,"rb");
int mbs=0,number=0,col=0,row=0;
fread(&mbs,4,1,dataFile);
fread(&number,4,1,dataFile);
fread(&row,4,1,dataFile);
fread(&col,4,1,dataFile);
revertInt(&mbs);
revertInt(&number);
revertInt(&row);
revertInt(&col);
fread(&mbs,4,1,labelFile);
fread(&number,4,1,labelFile);
revertInt(&mbs);
revertInt(&number);
unsigned char temp;
for(int i=0;i<number;++i)
{
for(int j=0;j<row*col;++j)
{
fread(&temp,1,1,dataFile);
//dataset[i][j]=static_cast<float>(temp);
dataset[(i*row*col) + j] = (float)temp;
}
fread(&temp,1,1,labelFile);
//printf("%s\n",*temp );
//labels[i]=static_cast<float>(temp);
labels[i] = (float)temp;
//printf("%f\n", labels[i]);
}
fclose(dataFile);
fclose(labelFile);
};
float* expand(float* tree, int* tree_arr_length, int new_tree_arr_length){
float *new_tree;
int i;
assert(new_tree_arr_length >= *tree_arr_length);
new_tree = (float *)malloc(NUM_FIELDS * new_tree_arr_length *sizeof(float));
for(i=0; i<NUM_FIELDS * (*tree_arr_length); i++){
new_tree[i] = tree[i];
}
return new_tree;
}
float* maybe_expand(float* tree, int* tree_arr_length, int tree_length){
int new_tree_arr_length;
float *new_tree;
// Buffer of 2 => up to 2 additions at a time
if(tree_length <= *tree_arr_length-2){
return tree;
}else{
new_tree_arr_length = (*tree_arr_length) * 2;
while(tree_length > new_tree_arr_length-2){
new_tree_arr_length *= 2;
}
printf("Expanding to %d\n", new_tree_arr_length);
new_tree = expand(tree, tree_arr_length, new_tree_arr_length);
*tree_arr_length = new_tree_arr_length;
return new_tree;
}
}
void batch_traverse_tree(float *tree, float *x, int x_length, int *batch_pos){
int pos, new_pos, x_i;
for(x_i=0; x_i < x_length; x_i++){
pos = 0;
while(1){
if(x[index(x_i, (int) tree[index(pos, FEAT_KEY, NUM_FIELDS)], FEATURE)] < tree[index(pos, CUT_KEY, NUM_FIELDS)]){
new_pos = (int) tree[index(pos, LEFT_KEY, NUM_FIELDS)];
}else{
new_pos = (int) tree[index(pos, RIGHT_KEY, NUM_FIELDS)];
}
if(new_pos == pos){
// Leaf nodes are set up to be idempotent
break;
}
pos = new_pos;
}
batch_pos[x_i] = pos;
}
}
void collect_min_max(float* x, int* batch_pos, int desired_pos, float* min_max_buffer){
float minimum, maximum, value;
int x_i, feat_i;
for(feat_i=0; feat_i < FEATURE; feat_i++){
minimum = FLT_MAX;
maximum = -FLT_MAX;
for(x_i=0; x_i<TRAIN_NUM; x_i++){
if(batch_pos[x_i] != desired_pos){
continue;
}
value = x[index(x_i, feat_i, FEATURE)];
if(value < minimum){
minimum = value;
}
if(value > maximum){
maximum = value;
}
}
min_max_buffer[index(feat_i, 0, 2)] = minimum;
min_max_buffer[index(feat_i, 1, 2)] = maximum;
}
}
int int_unif(int low, int high){
return low + ((int) rand()) % (high - low);
}
float float_unif(float low, float high){
return (high - low) * ((float)rand() / RAND_MAX) + low;
}
int int_cmp(const void *a, const void *b)
{
const int *ia = (const int *)a; // casting pointer types
const int *ib = (const int *)b;
return *ia - *ib;
/* integer comparison: returns negative if b > a
and positive if a > b */
}
int get_num_valid_feats(float* min_max_buffer){
int num_valid_feats;
int feat_i;
num_valid_feats = 0;
for(feat_i=0; feat_i<FEATURE; feat_i++){
if(min_max_buffer[index(feat_i, 0, 2)] != min_max_buffer[index(feat_i, 1, 2)]){
num_valid_feats++;
}
}
return num_valid_feats;
}
void populate_random_feat_cuts(float* min_max_buffer, int num_valid_feats, int feat_per_node, int* random_feats, float* random_cuts){
int valid_seen, curr_idx;
int i, feat_i;
for(i=0; i<feat_per_node; i++){
// Overloading. First using random_cuts to store indices.
random_feats[i] = int_unif(0, num_valid_feats);
}
qsort(random_feats, feat_per_node, sizeof(int), int_cmp);
valid_seen = 0;
feat_i = 0;
for(i=0; i<feat_per_node; i++){
curr_idx = random_feats[i];
while(valid_seen < curr_idx){
feat_i++;
if(min_max_buffer[index(feat_i, 0, 2)] != min_max_buffer[index(feat_i, 1, 2)]){
valid_seen++;
}
}
random_feats[i] = feat_i;
random_cuts[i] = float_unif(
min_max_buffer[index(feat_i, 0, 2)], min_max_buffer[index(feat_i, 1, 2)]
);
}
}
void place_best_feat_cuts(
float* x, float* y, int* random_feats, float* random_cuts,
int* class_counts_a, int* class_counts_b,
int feat_per_node, int* batch_pos, int tree_pos, float* tree
){
int feat_i, i;
float best_improvement, best_cut, proxy_improvement;
int best_feat;
int total_a, total_b;
float impurity_a, impurity_b;
best_improvement = -FLT_MAX;
best_feat = -1;
best_cut = 0;
for(feat_i=0; feat_i<feat_per_node; feat_i++){
total_a = 0;
total_b = 0;
for(i=0; i<NUMBER_OF_CLASSES; i++){
class_counts_a[i] = 0;
class_counts_b[i] = 0;
}
for(i=0; i<TRAIN_NUM; i++){
if(batch_pos[i] != tree_pos){
continue;
}
if(x[index(i, random_feats[feat_i], FEATURE)] < random_cuts[feat_i]){
class_counts_a[(int) y[i]]++;
total_a++;
}else{
class_counts_b[(int) y[i]]++;
total_b++;
}
}
impurity_a = 1;
impurity_b = 1;
for(i=0; i<NUMBER_OF_CLASSES; i++){
impurity_a -= pow(((float) class_counts_a[i]) / total_a, 2);
impurity_b -= pow(((float) class_counts_b[i]) / total_b, 2);
}
proxy_improvement = - total_a * impurity_a - total_b * impurity_b;
if(proxy_improvement > best_improvement){
best_feat = random_feats[feat_i];
best_cut = random_cuts[feat_i];
best_improvement = proxy_improvement;
}
}
tree[index(tree_pos, FEAT_KEY, NUM_FIELDS)] = best_feat;
tree[index(tree_pos, CUT_KEY, NUM_FIELDS)] = best_cut;
}
float terminate_node(float* y, int* batch_pos, int pos){
/*
If all y's are the same return class
else return -1
*/
int i;
float y_token;
y_token = -1;
for(i=0; i<TRAIN_NUM; i++){
if(batch_pos[i] == pos){
if(y_token == -1){
y_token = y[i];
}else if(y_token != y[i]){
return -1;
}
}
}
return y_token;
}
float get_mode(int* batch_pos, int tree_pos, float* y, int* class_counts){
int i, maximum_count, maximum_class;
for(i=0; i<NUMBER_OF_CLASSES; i++){
class_counts[i] = 0;
}
for(i=0; i<TRAIN_NUM; i++){
if(batch_pos[i] == tree_pos){
class_counts[(int) y[i]]++;
}
}
maximum_count = -1;
maximum_class = -1;
for(i=0; i<NUMBER_OF_CLASSES; i++){
if(class_counts[i] > maximum_count){
maximum_count = class_counts[i];
maximum_class = i;
}
}
return maximum_class;
}
int grow_tree(
float* x, float* y,
int tree_pos, float* tree, int* tree_length,
int* batch_pos, float* min_max_buffer,
int feat_per_node, int* random_feats, float* random_cuts,
int* class_counts_a, int* class_counts_b,
int max_depth
){
float early_termination;
int num_valid_feats;
if(tree[index(tree_pos, DEPTH_KEY, NUM_FIELDS)] == max_depth){
tree[index(tree_pos, PRED_KEY, NUM_FIELDS)] = get_mode(
batch_pos, tree_pos, y, class_counts_a
);
return 0;
}
early_termination = terminate_node(y, batch_pos, tree_pos);
if(early_termination != -1){
tree[index(tree_pos, PRED_KEY, NUM_FIELDS)] = early_termination;
return 0;
}
collect_min_max(x, batch_pos, tree_pos, min_max_buffer);
num_valid_feats = get_num_valid_feats(min_max_buffer);
populate_random_feat_cuts(min_max_buffer, num_valid_feats, feat_per_node, random_feats, random_cuts);
place_best_feat_cuts(
x, y, random_feats, random_cuts,
class_counts_a, class_counts_b,
feat_per_node, batch_pos, tree_pos, tree
);
int left_tree_pos;
int right_tree_pos;
left_tree_pos = *tree_length;
right_tree_pos = *tree_length + 1;
*tree_length += 2;
// Update tree nodes
tree[index(tree_pos, LEFT_KEY, NUM_FIELDS)] = left_tree_pos;
tree[index(tree_pos, RIGHT_KEY, NUM_FIELDS)] = right_tree_pos;
// Prefill child nodes
tree[index(left_tree_pos, LEFT_KEY, NUM_FIELDS)] = left_tree_pos;
tree[index(left_tree_pos, RIGHT_KEY, NUM_FIELDS)] = left_tree_pos;
tree[index(left_tree_pos, DEPTH_KEY, NUM_FIELDS)] = tree[index(tree_pos, DEPTH_KEY, NUM_FIELDS)] + 1;
tree[index(left_tree_pos, FEAT_KEY, NUM_FIELDS)] = -1;
tree[index(left_tree_pos, CUT_KEY, NUM_FIELDS)] = -1;
tree[index(right_tree_pos, LEFT_KEY, NUM_FIELDS)] = right_tree_pos;
tree[index(right_tree_pos, RIGHT_KEY, NUM_FIELDS)] = right_tree_pos;
tree[index(right_tree_pos, DEPTH_KEY, NUM_FIELDS)] = tree[index(tree_pos, DEPTH_KEY, NUM_FIELDS)] + 1;
tree[index(right_tree_pos, FEAT_KEY, NUM_FIELDS)] = -1;
tree[index(right_tree_pos, CUT_KEY, NUM_FIELDS)] = -1;
return 2;
}
float calc_accuracy(float* tree, float* x, float* y, int x_length, int* batch_pos){
int i, pred, correct;
batch_traverse_tree(tree, x, x_length, batch_pos);
correct = 0;
for(i=0; i<x_length; i++){
pred = (int) tree[index(batch_pos[i], PRED_KEY, NUM_FIELDS)];
if(pred == (int) y[i]){
correct++;
}
}
return ((float) correct) / x_length;
}
int main(int argc, char * argv[])
{
float *dataset_train,*dataset_test;
float *labels_train,*labels_test;
dataset_train = (float *)malloc(FEATURE * TRAIN_NUM*sizeof(float));
labels_train = (float *)malloc(TRAIN_NUM*sizeof(float));
dataset_test = (float *)malloc(FEATURE * TEST_NUM*sizeof(float));
labels_test = (float *)malloc(TEST_NUM*sizeof(float));
char file_train_set[] = "data/train-images-idx3-ubyte";
char file_train_label[] = "data/train-labels-idx1-ubyte";
char file_test_set[] = "data/t10k-images-idx3-ubyte";
char file_test_label[] = "data/t10k-labels-idx1-ubyte";
readData(dataset_train,labels_train,file_train_set,file_train_label);
readData(dataset_test,labels_test,file_test_set,file_test_label);
float *tree;
int *tree_arr_length;
int *tree_length;
int feat_per_node;
int tree_pos;
int *batch_pos;
float *min_max_buffer;
int *random_feats;
float *random_cuts;
int *class_counts_a, *class_counts_b;
int prev_depth, max_depth;
srand(1);
tree_arr_length = (int *)malloc(sizeof(int));
tree_length = (int *)malloc(sizeof(int));
*tree_arr_length = 1024;
*tree_length = 1;
feat_per_node = (int) ceil(sqrt(FEATURE));
tree = (float *)malloc(NUM_FIELDS * (*tree_arr_length) *sizeof(float));
batch_pos = (int *)malloc(TRAIN_NUM *sizeof(float));
min_max_buffer = (float *)malloc(FEATURE * 2 *sizeof(float));
random_feats = (int *)malloc(FEATURE * sizeof(int));
random_cuts = (float *)malloc(FEATURE * sizeof(float));
class_counts_a = (int *)malloc(NUMBER_OF_CLASSES *sizeof(int));
class_counts_b = (int *)malloc(NUMBER_OF_CLASSES *sizeof(int));
tree_pos = 0;
tree[index(0, LEFT_KEY, NUM_FIELDS)] = 0;
tree[index(0, RIGHT_KEY, NUM_FIELDS)] = 0;
tree[index(0, DEPTH_KEY, NUM_FIELDS)] = 0;
max_depth = 1000;
prev_depth = -1;
for(tree_pos=0; tree_pos<*tree_length; tree_pos++){
printf("%d (depth=%f)\n", tree_pos, tree[index(tree_pos, DEPTH_KEY, NUM_FIELDS)]);
if(tree[index(tree_pos, DEPTH_KEY, NUM_FIELDS)] > max_depth){
break;
}
if(prev_depth!=tree[index(tree_pos, DEPTH_KEY, NUM_FIELDS)]){
prev_depth = tree[index(tree_pos, DEPTH_KEY, NUM_FIELDS)];
batch_traverse_tree(tree, dataset_train, TRAIN_NUM, batch_pos);
}
grow_tree(
dataset_train, labels_train,
tree_pos, tree, tree_length,
batch_pos, min_max_buffer,
feat_per_node, random_feats, random_cuts,
class_counts_a, class_counts_b,
max_depth
);
tree = maybe_expand(tree, tree_arr_length, *tree_length);
}
printf("Train Accuracy %f\n", calc_accuracy(
tree, dataset_train, labels_train, TRAIN_NUM, batch_pos
));
printf("Test Accuracy %f\n", calc_accuracy(
tree, dataset_test, labels_test, TEST_NUM, batch_pos
));
return 0;
}