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Building with Python 3.11 fails #297

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dstansby opened this issue Jul 11, 2022 · 3 comments
Closed

Building with Python 3.11 fails #297

dstansby opened this issue Jul 11, 2022 · 3 comments

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@dstansby
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dstansby commented Jul 11, 2022 •
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On the sunpy CI (sunpy/sunpy#6330) the reproject bulid with Python 3.11 failed with:

2022-07-11T20:46:52.2642007Z   Building wheel for reproject (pyproject.toml): started
2022-07-11T20:46:52.2642242Z   Building wheel for reproject (pyproject.toml): finished with status 'error'
2022-07-11T20:46:52.2642406Z   error: subprocess-exited-with-error
2022-07-11T20:46:52.2642470Z   
2022-07-11T20:46:52.2642706Z   × Building wheel for reproject (pyproject.toml) did not run successfully.
2022-07-11T20:46:52.2642818Z   │ exit code: 1
2022-07-11T20:46:52.2642952Z   ╰─> [111 lines of output]
2022-07-11T20:46:52.2643443Z       /tmp/pip-build-env-fjgf1s6_/overlay/lib/python3.11/site-packages/setuptools/config/setupcfg.py:463: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead.
2022-07-11T20:46:52.2643591Z         warnings.warn(msg, warning_class)
2022-07-11T20:46:52.2643717Z       running bdist_wheel
2022-07-11T20:46:52.2643793Z       running build
2022-07-11T20:46:52.2643873Z       running build_py
2022-07-11T20:46:52.2643949Z       creating build
2022-07-11T20:46:52.2644130Z       creating build/lib.linux-x86_64-cpython-311
2022-07-11T20:46:52.2644328Z       creating build/lib.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2644569Z       copying reproject/_astropy_init.py -> build/lib.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2644805Z       copying reproject/utils.py -> build/lib.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2645054Z       copying reproject/array_utils.py -> build/lib.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2645296Z       copying reproject/conftest.py -> build/lib.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2645544Z       copying reproject/wcs_utils.py -> build/lib.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2645782Z       copying reproject/version.py -> build/lib.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2646016Z       copying reproject/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2646230Z       creating build/lib.linux-x86_64-cpython-311/reproject/adaptive
2022-07-11T20:46:52.2646488Z       copying reproject/adaptive/core.py -> build/lib.linux-x86_64-cpython-311/reproject/adaptive
2022-07-11T20:46:52.2646771Z       copying reproject/adaptive/high_level.py -> build/lib.linux-x86_64-cpython-311/reproject/adaptive
2022-07-11T20:46:52.2647048Z       copying reproject/adaptive/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/adaptive
2022-07-11T20:46:52.2647283Z       creating build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2647606Z       copying reproject/spherical_intersect/core.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2647932Z       copying reproject/spherical_intersect/overlap.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2648258Z       copying reproject/spherical_intersect/high_level.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2648591Z       copying reproject/spherical_intersect/setup_package.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2648912Z       copying reproject/spherical_intersect/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2649130Z       creating build/lib.linux-x86_64-cpython-311/reproject/mosaicking
2022-07-11T20:46:52.2649409Z       copying reproject/mosaicking/background.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking
2022-07-11T20:46:52.2649693Z       copying reproject/mosaicking/coadd.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking
2022-07-11T20:46:52.2649984Z       copying reproject/mosaicking/subset_array.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking
2022-07-11T20:46:52.2650279Z       copying reproject/mosaicking/wcs_helpers.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking
2022-07-11T20:46:52.2650562Z       copying reproject/mosaicking/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking
2022-07-11T20:46:52.2650769Z       creating build/lib.linux-x86_64-cpython-311/reproject/tests
2022-07-11T20:46:52.2651046Z       copying reproject/tests/test_high_level.py -> build/lib.linux-x86_64-cpython-311/reproject/tests
2022-07-11T20:46:52.2651312Z       copying reproject/tests/test_utils.py -> build/lib.linux-x86_64-cpython-311/reproject/tests
2022-07-11T20:46:52.2651575Z       copying reproject/tests/helpers.py -> build/lib.linux-x86_64-cpython-311/reproject/tests
2022-07-11T20:46:52.2651887Z       copying reproject/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/tests
2022-07-11T20:46:52.2652111Z       creating build/lib.linux-x86_64-cpython-311/reproject/interpolation
2022-07-11T20:46:52.2652445Z       copying reproject/interpolation/core.py -> build/lib.linux-x86_64-cpython-311/reproject/interpolation
2022-07-11T20:46:52.2652755Z       copying reproject/interpolation/high_level.py -> build/lib.linux-x86_64-cpython-311/reproject/interpolation
2022-07-11T20:46:52.2653053Z       copying reproject/interpolation/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/interpolation
2022-07-11T20:46:52.2653263Z       creating build/lib.linux-x86_64-cpython-311/reproject/healpix
2022-07-11T20:46:52.2653531Z       copying reproject/healpix/core.py -> build/lib.linux-x86_64-cpython-311/reproject/healpix
2022-07-11T20:46:52.2653797Z       copying reproject/healpix/utils.py -> build/lib.linux-x86_64-cpython-311/reproject/healpix
2022-07-11T20:46:52.2654074Z       copying reproject/healpix/high_level.py -> build/lib.linux-x86_64-cpython-311/reproject/healpix
2022-07-11T20:46:52.2654334Z       copying reproject/healpix/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/healpix
2022-07-11T20:46:52.2654563Z       creating build/lib.linux-x86_64-cpython-311/reproject/adaptive/tests
2022-07-11T20:46:52.2654866Z       copying reproject/adaptive/tests/test_core.py -> build/lib.linux-x86_64-cpython-311/reproject/adaptive/tests
2022-07-11T20:46:52.2655159Z       copying reproject/adaptive/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/adaptive/tests
2022-07-11T20:46:52.2655407Z       creating build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect/tests
2022-07-11T20:46:52.2655763Z       copying reproject/spherical_intersect/tests/test_high_level.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect/tests
2022-07-11T20:46:52.2656120Z       copying reproject/spherical_intersect/tests/test_reproject.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect/tests
2022-07-11T20:46:52.2656477Z       copying reproject/spherical_intersect/tests/test_overlap.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect/tests
2022-07-11T20:46:52.2656818Z       copying reproject/spherical_intersect/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect/tests
2022-07-11T20:46:52.2657054Z       creating build/lib.linux-x86_64-cpython-311/reproject/mosaicking/tests
2022-07-11T20:46:52.2657745Z       copying reproject/mosaicking/tests/test_background.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking/tests
2022-07-11T20:46:52.2658072Z       copying reproject/mosaicking/tests/test_subset_array.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking/tests
2022-07-11T20:46:52.2658393Z       copying reproject/mosaicking/tests/test_wcs_helpers.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking/tests
2022-07-11T20:46:52.2658695Z       copying reproject/mosaicking/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking/tests
2022-07-11T20:46:52.2659007Z       copying reproject/mosaicking/tests/test_coadd.py -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking/tests
2022-07-11T20:46:52.2659247Z       creating build/lib.linux-x86_64-cpython-311/reproject/interpolation/tests
2022-07-11T20:46:52.2659570Z       copying reproject/interpolation/tests/test_core.py -> build/lib.linux-x86_64-cpython-311/reproject/interpolation/tests
2022-07-11T20:46:52.2659889Z       copying reproject/interpolation/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/interpolation/tests
2022-07-11T20:46:52.2660115Z       creating build/lib.linux-x86_64-cpython-311/reproject/healpix/tests
2022-07-11T20:46:52.2660402Z       copying reproject/healpix/tests/test_utils.py -> build/lib.linux-x86_64-cpython-311/reproject/healpix/tests
2022-07-11T20:46:52.2660706Z       copying reproject/healpix/tests/test_healpix.py -> build/lib.linux-x86_64-cpython-311/reproject/healpix/tests
2022-07-11T20:46:52.2661069Z       copying reproject/healpix/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/reproject/healpix/tests
2022-07-11T20:46:52.2661440Z       copying reproject/spherical_intersect/overlapArea.h -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2661785Z       copying reproject/spherical_intersect/reproject_slice_c.h -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2662096Z       copying reproject/spherical_intersect/mNaN.h -> build/lib.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2662312Z       creating build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2662604Z       copying reproject/tests/data/galactic_2d.fits -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2662885Z       copying reproject/tests/data/cube.hdr -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2663166Z       copying reproject/tests/data/gc_ga.hdr -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2663453Z       copying reproject/tests/data/equatorial_3d.fits -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2663746Z       copying reproject/tests/data/secchi_l0_a.fits -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2664037Z       copying reproject/tests/data/mwpan2_RGB_3600.hdr -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2664325Z       copying reproject/tests/data/secchi_l0_b.fits -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2664619Z       copying reproject/tests/data/aia_171_level1.fits -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2664898Z       copying reproject/tests/data/gc_eq.hdr -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2665189Z       copying reproject/tests/data/aia_171_level1.asdf -> build/lib.linux-x86_64-cpython-311/reproject/tests/data
2022-07-11T20:46:52.2665438Z       creating build/lib.linux-x86_64-cpython-311/reproject/adaptive/tests/reference
2022-07-11T20:46:52.2665832Z       copying reproject/adaptive/tests/reference/test_reproject_adaptive_roundtrip.fits -> build/lib.linux-x86_64-cpython-311/reproject/adaptive/tests/reference
2022-07-11T20:46:52.2666225Z       copying reproject/adaptive/tests/reference/test_reproject_adaptive_2d_rotated.fits -> build/lib.linux-x86_64-cpython-311/reproject/adaptive/tests/reference
2022-07-11T20:46:52.2666590Z       copying reproject/adaptive/tests/reference/test_reproject_adaptive_2d.fits -> build/lib.linux-x86_64-cpython-311/reproject/adaptive/tests/reference
2022-07-11T20:46:52.2666839Z       creating build/lib.linux-x86_64-cpython-311/reproject/mosaicking/tests/reference
2022-07-11T20:46:52.2667207Z       copying reproject/mosaicking/tests/reference/test_coadd_solar_map.fits -> build/lib.linux-x86_64-cpython-311/reproject/mosaicking/tests/reference
2022-07-11T20:46:52.2667469Z       creating build/lib.linux-x86_64-cpython-311/reproject/interpolation/tests/reference
2022-07-11T20:46:52.2667886Z       copying reproject/interpolation/tests/reference/test_reproject_celestial_3d_equ2gal.fits -> build/lib.linux-x86_64-cpython-311/reproject/interpolation/tests/reference
2022-07-11T20:46:52.2668278Z       copying reproject/interpolation/tests/reference/test_reproject_roundtrip.fits -> build/lib.linux-x86_64-cpython-311/reproject/interpolation/tests/reference
2022-07-11T20:46:52.2668690Z       copying reproject/interpolation/tests/reference/test_reproject_celestial_2d_gal2equ.fits -> build/lib.linux-x86_64-cpython-311/reproject/interpolation/tests/reference
2022-07-11T20:46:52.2669065Z       copying reproject/interpolation/tests/reference/test_small_cutout.fits -> build/lib.linux-x86_64-cpython-311/reproject/interpolation/tests/reference
2022-07-11T20:46:52.2669299Z       creating build/lib.linux-x86_64-cpython-311/reproject/healpix/tests/data
2022-07-11T20:46:52.2669633Z       copying reproject/healpix/tests/data/reference_result.fits -> build/lib.linux-x86_64-cpython-311/reproject/healpix/tests/data
2022-07-11T20:46:52.2670047Z       copying reproject/healpix/tests/data/bayestar.fits.gz -> build/lib.linux-x86_64-cpython-311/reproject/healpix/tests/data
2022-07-11T20:46:52.2670122Z       running build_ext
2022-07-11T20:46:52.2670310Z       cythoning reproject/spherical_intersect/_overlap.pyx to reproject/spherical_intersect/_overlap.c
2022-07-11T20:46:52.2671028Z       /tmp/pip-build-env-fjgf1s6_/overlay/lib/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-install-46twd571/reproject_476971c7fb6149ed9a8320692a2eb052/reproject/spherical_intersect/_overlap.pyx
2022-07-11T20:46:52.2671159Z         tree = Parsing.p_module(s, pxd, full_module_name)
2022-07-11T20:46:52.2671327Z       cythoning ./reproject/adaptive/deforest.pyx to ./reproject/adaptive/deforest.c
2022-07-11T20:46:52.2672024Z       /tmp/pip-build-env-fjgf1s6_/overlay/lib/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-install-46twd571/reproject_476971c7fb6149ed9a8320692a2eb052/reproject/adaptive/deforest.pyx
2022-07-11T20:46:52.2672150Z         tree = Parsing.p_module(s, pxd, full_module_name)
2022-07-11T20:46:52.2672367Z       building 'reproject.spherical_intersect._overlap' extension
2022-07-11T20:46:52.2672550Z       creating build/temp.linux-x86_64-cpython-311
2022-07-11T20:46:52.2672749Z       creating build/temp.linux-x86_64-cpython-311/reproject
2022-07-11T20:46:52.2672975Z       creating build/temp.linux-x86_64-cpython-311/reproject/spherical_intersect
2022-07-11T20:46:52.2673891Z       gcc -pthread -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/tmp/pip-build-env-fjgf1s6_/overlay/lib/python3.11/site-packages/numpy/core/include -Ireproject/spherical_intersect -I/home/runner/work/sunpy/sunpy/.tox/py311/include -I/opt/hostedtoolcache/Python/3.11.0-beta.3/x64/include/python3.11 -c reproject/spherical_intersect/_overlap.c -o build/temp.linux-x86_64-cpython-311/reproject/spherical_intersect/_overlap.o -O2
2022-07-11T20:46:52.2674087Z       reproject/spherical_intersect/_overlap.c:196:12: fatal error: longintrepr.h: No such file or directory
2022-07-11T20:46:52.2674190Z         196 |   #include "longintrepr.h"
2022-07-11T20:46:52.2674281Z             |            ^~~~~~~~~~~~~~~
2022-07-11T20:46:52.2674372Z       compilation terminated.
2022-07-11T20:46:52.2674565Z       error: command '/usr/bin/gcc' failed with exit code 1
2022-07-11T20:46:52.2674645Z       [end of output]
2022-07-11T20:46:52.2674709Z   
2022-07-11T20:46:52.2674865Z   note: This error originates from a subprocess, and is likely not a problem with pip.
2022-07-11T20:46:52.2674978Z   ERROR: Failed building wheel for reproject
This was referenced Jul 11, 2022
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@ConorMacBride
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ConorMacBride commented Jul 11, 2022 •
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I think this issue may be resolved by cython/cython#4428

@ConorMacBride
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Maybe removing or updating the cython pin in pyproject.toml will make the build pass.

@pllim
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pllim commented Jan 26, 2023

CI now runs Python 3.11

@pllim pllim closed this as completed Jan 26, 2023
@dstansby dstansby mentioned this issue May 6, 2023
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